Citrus Sinensis ID: 001452

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070-----
MAASVPPGAPRQQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHcccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEEccHHHHHHcHHHHHHHHHHHHHHccccccccEEEEEEEccEEEEEEcccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccccEEccEEEEEEccccccccHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEEEEcccccccccccccccccccEEEEEEEEcccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHcccccEEEccccccccccccccccccccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEEcHccccccHHHHHHccccEEEEEcccccccccccccccccccccccEEccccHHcEccHHHHHccccEEEEEcccccccccHHHcccccccccccccccccHHcccEEEEEccHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccEEEEEEcccccccccEEEEccccccccccccccEEcHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHcccEEEEEEEccccEEHEEHcccccccccEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEEEcccEEEEcccccEEEcccccccccccccccEEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHcccccEccccccccccccccccccccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHccccHccccccccccccccHHHHHHHHHHHHHHHHcccccc
maasvppgaprqqppppppnynpnlqqnpnslsdnfqnlnlnrpvsmpnsgprptpfaqspqfpvtapsppmsrpgppppgalsrpagtpqqsfppnvapvrpfgppvgqslpfgsrpppgsfpssmggggpvgvptsgvppssafpssgsltrpvgatpgarpfplasslpfssglnvapsgasdgvtsngpmafaasggprfppagsgaqqtrtppagppsmltsarspqqspsmrfppvqqspfsaapqnappfssappfsaapqsappfsaapqstppfsgapsfpapspqgppqvspfgahtwsaqpvgpsssipgsaqpsrmfgmppplqtqtmtnmppamgqtgapmpasskidpqqiprpvpsstvvlydtregnqanppppatseyivrdmgncsprymrctisqipctndlltTSGMQLALLvqplalphpseepiqivdfgdmgpvrcsrCKAYINPFMKFIDQGRRFICSlcgftdetprdyhcnlgpdgrrrdaddrpelcrgtvefvatkeymvrdpmpAVFFFLIDVSMNALQTGATAAACSAISQVIsdlpegprtmvgiatfdSTIHFYNLKRAlqqplmlivpdvedvytplqsdiivpvSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVlpsvgigalsareaegrsnissgekethkllqPADKTLKAMAIEFAEYQVCVDVFITTQtyvdiasisvipkttggqvyyyypfsalsdpaklyndlrwnitrpqgFEAVMRVRCSQGIQVQEYHGnfckriptdidlpaidcNKAIMVTLKhddklqdgsecaFQCALLYTTVygqrrirvttlslpctsnlsnlyrsadldTQFTCFMKQaaseipstplaNVREQMMNLCVNALVSYRKFCATvsssgqlilpealkllPLYTLALIKStglrtdgriddrsFWITYVSSvsipfavpfvyprmvaihdldkgedgsiippflplssehvsdegIYLLENGEDALIYIGssvdssilhqlfgissvdevptqfvlqqydnplskkLNDVVNEIRRQRCSYLR
maasvppgaprqqpppPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTregnqanppppatseYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCnlgpdgrrrdaddrpelCRGTVefvatkeymvrDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEgrsnissgekethkllQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIasisvipkttggQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTtlslpctsnlsNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKStglrtdgriDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQqydnplskklndvvNEIRRQRCSYLR
MAASVppgaprqqppppppnynpnlqqnpnSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTapsppmsrpgppppgalsrpagTPQQSFPPNVAPVRPFGPPVGQslpfgsrpppgsfpssmggggpvgvptsgvppssAFPSSGSLTRPVGATPGARpfplasslpfssGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVqqspfsaapqnappfssappfsaapqsappfsaapqstppfsgapsfpapspqgppqvspfgAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMqlallvqplalpHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLgpdgrrrdaddrpELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTaesafgaavkaaflalksTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQlilpealkllplytlalikSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNL*************ELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGAL***************************TLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAI**********************VSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNE**********
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************YDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGR*R*ADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGI**********************KLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYR**************PEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCS***
***************PPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPV***************************SFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGV************TRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRF***********************************************************************************************VSPFGAHTWSA*************QPSRMFGMPPPLQTQTMTNMPPAMG*************PQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA*************KETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR
*****************PPNY**************************************SP*****APSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTS***************************************************************************************************************************************************APSFP**********SPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTG******SKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA****************HKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQR*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAASVPPGAPRQQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTPFAQSPQFPVTAPSPPMSRPGPPPPGALSRPAGTPQQSFPPNVAPVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1075 2.2.26 [Sep-21-2011]
Q9M0811080 Protein transport protein yes no 0.936 0.932 0.654 0.0
Q9M2911096 Protein transport protein no no 0.733 0.719 0.724 0.0
P539921094 Protein transport protein yes no 0.904 0.888 0.348 1e-151
Q9SFU01038 Protein transport protein no no 0.620 0.642 0.372 1e-137
O954871268 Protein transport protein no no 0.609 0.516 0.359 1e-120
A6QNT81099 Protein transport protein no no 0.623 0.609 0.351 1e-120
Q3U2P11090 Protein transport protein no no 0.620 0.611 0.348 1e-119
O954861093 Protein transport protein no no 0.618 0.608 0.349 1e-119
A1CUC3919 Protein transport protein N/A no 0.708 0.829 0.328 1e-115
Q1E6U9932 Protein transport protein N/A no 0.613 0.708 0.343 1e-112
>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3 Back     alignment and function desciption
 Score = 1339 bits (3466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/1103 (65%), Positives = 821/1103 (74%), Gaps = 96/1103 (8%)

Query: 1    MAASVPPGAPR--QQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPN--------- 49
            M A VPPGAPR   Q    PPN+ P  Q N N+L+DN QNL+LNRP  M           
Sbjct: 1    MVAPVPPGAPRPNSQQNSGPPNFYPGSQGNSNALADNMQNLSLNRPPPMMPGSGPRPPPP 60

Query: 50   --SGPRPTPFAQSPQF--PVTAPSPPMSRPGPPPPGALSRPAGTPQQS----FPPNVAPV 101
                P+P P  QSP +  P   PSP MSRPGPP    ++RP G P  S    F  NV   
Sbjct: 61   FGQSPQPFP-QQSPSYGAPQRGPSP-MSRPGPP--AGMARPGGPPPVSQPAGFQSNVPLN 116

Query: 102  RPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFPSSG-SLTRPVGATP 160
            RP GPP  Q   FGSRP   S P     GGPV  P +    SS FP+ G S +   G  P
Sbjct: 117  RPTGPPSRQP-SFGSRP---SMP-----GGPVAQPAAS---SSGFPAFGPSGSVAAGPPP 164

Query: 161  GARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAASGGPR---FPPAGSGAQQTRTP 217
            G+RP    S  P  SG+++ PSG   G  SNG     + G PR   FP  G+     + P
Sbjct: 165  GSRPMAFGSPPPVGSGMSMPPSGMIGGPVSNGHQMVGSGGFPRGTQFP--GAAVTTPQAP 222

Query: 218  PAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAPPFS--AAPQSAPP--F 273
               PPS          +P  R PP         P  +   S  PP +   AP   PP  F
Sbjct: 223  YVRPPS----------APYARTPP--------QPLGSHSLSGNPPLTPFTAPSMPPPATF 264

Query: 274  SAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPP 333
              AP   P  SG P        GPP          SAQ V P    PG  QP R +GM P
Sbjct: 265  PGAPHGRPAVSGLP-------YGPP----------SAQ-VAPPLGFPGQMQPPR-YGMGP 305

Query: 334  PLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATS 393
             L  Q+MTN+P AMGQ GA +P  S+IDP QIPRP  SS+  +++TR+ NQANPPPPATS
Sbjct: 306  -LPNQSMTNIPTAMGQPGATVPGPSRIDPNQIPRPGSSSSPTVFETRQSNQANPPPPATS 364

Query: 394  EYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGD 453
            +Y+VRD GNCSPRYMRCTI+QIPCT DLL+TSGMQLAL+VQPLAL HPSEEPIQ+VDFG+
Sbjct: 365  DYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLALMVQPLALSHPSEEPIQVVDFGE 424

Query: 454  MGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL 513
             GPVRCSRCK YINPFMKFIDQGR+FIC+ CG+TDETPRDYHCNLGPDGRRRD D+RPEL
Sbjct: 425  GGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDETPRDYHCNLGPDGRRRDVDERPEL 484

Query: 514  CRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPEGPRTM 573
            CRGTVEFVATKEYMVRDPMPAV+FFLIDVSMNA+QTGATAAAC+AI QV+SDLPEGPRT 
Sbjct: 485  CRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQTGATAAACNAIQQVLSDLPEGPRTF 544

Query: 574  VGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIP 633
            VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPL++D++V +SECRQHLELLL+SIP
Sbjct: 545  VGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLETDVVVQLSECRQHLELLLDSIP 604

Query: 634  SMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSG 693
            +MFQ ++  ESAFGAAVKAAFLA+KS GGKL+VFQS+L SVG+GALS+REAEGR+N+S+G
Sbjct: 605  TMFQESKIPESAFGAAVKAAFLAMKSKGGKLMVFQSILCSVGVGALSSREAEGRANMSAG 664

Query: 694  EKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYP 753
            EKE HKLLQPADKTLK MAIEFAEYQVCVD+FITTQ YVD+ASISVIP+TTGGQVY YYP
Sbjct: 665  EKEAHKLLQPADKTLKTMAIEFAEYQVCVDIFITTQAYVDMASISVIPRTTGGQVYCYYP 724

Query: 754  FSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDC 813
            FSALSDP KLYNDL+WNITRPQGFEAVMRVRCSQGIQVQEY GNFCKRIPTDIDLPA   
Sbjct: 725  FSALSDPPKLYNDLKWNITRPQGFEAVMRVRCSQGIQVQEYSGNFCKRIPTDIDLPA--- 781

Query: 814  NKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLD 873
                     HDDKLQDG+ECAFQCALLYTT+YG+RRIRVTTLSL CT+ LSNL+R+ADLD
Sbjct: 782  ---------HDDKLQDGAECAFQCALLYTTIYGERRIRVTTLSLSCTNMLSNLFRAADLD 832

Query: 874  TQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSGQLILPEALKLLP 933
            +QF C +KQAA+EIPS  L  V+EQ  N C+NAL +YRKFCATV+SSGQLILPEALKL P
Sbjct: 833  SQFACMLKQAANEIPSKALPLVKEQATNSCINALYAYRKFCATVTSSGQLILPEALKLFP 892

Query: 934  LYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLD-KGEDGSII 992
            LYTLAL KS GLRTDGRIDDRSFWI YVSS+S P A+P VYPRM+++HDLD K  +GS++
Sbjct: 893  LYTLALTKSVGLRTDGRIDDRSFWINYVSSLSTPLAIPLVYPRMISVHDLDVKDTEGSVL 952

Query: 993  PPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPTQFVLQQYD 1052
            PP +PLSSEH+S+EG+Y LENGED L+++G SVDS IL +LF +SS  E+P QFVLQQYD
Sbjct: 953  PPPIPLSSEHISNEGVYFLENGEDGLLFVGESVDSDILQKLFAVSSAAEIPNQFVLQQYD 1012

Query: 1053 NPLSKKLNDVVNEIRRQRCSYLR 1075
            N LSKK ND VNEIRRQRCSYLR
Sbjct: 1013 NQLSKKFNDAVNEIRRQRCSYLR 1035
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3 Back     alignment and function description
>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3 Back     alignment and function description
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 Back     alignment and function description
>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 Back     alignment and function description
>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 Back     alignment and function description
>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 Back     alignment and function description
>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 Back     alignment and function description
>sp|A1CUC3|SEC24_ASPCL Protein transport protein sec24 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec24 PE=3 SV=1 Back     alignment and function description
>sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1075
3594937591124 PREDICTED: protein transport protein Sec 0.964 0.922 0.727 0.0
2555423721094 Protein transport protein Sec24C, putati 0.962 0.946 0.743 0.0
2241313421080 predicted protein [Populus trichocarpa] 0.949 0.945 0.720 0.0
2555453861056 Protein transport protein Sec24C, putati 0.944 0.961 0.691 0.0
2241233341103 predicted protein [Populus trichocarpa] 0.910 0.887 0.691 0.0
4494589181105 PREDICTED: protein transport protein Sec 0.951 0.925 0.685 0.0
4436094491092 Sec24-like transport protein [Arabidopsi 0.947 0.933 0.663 0.0
3565344161085 PREDICTED: protein transport protein Sec 0.734 0.728 0.808 0.0
72701681069 putative protein [Arabidopsis thaliana] 0.936 0.942 0.654 0.0
3341870941080 sec24-like transport protein [Arabidopsi 0.936 0.932 0.654 0.0
>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1531 bits (3965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/1117 (72%), Positives = 909/1117 (81%), Gaps = 80/1117 (7%)

Query: 1    MAASVPPGAPR-QQPPPPPPNYNPNLQQNPNSLSDNFQNLNLNRPVSMPNSGPRPTP-FA 58
            MAA VPPGAPR    PPPPPNYNPN Q+ P+SL++N QNL +NRP S+PNS PRP P + 
Sbjct: 1    MAAPVPPGAPRATNTPPPPPNYNPNYQRTPDSLAENMQNLQINRPPSVPNSTPRPPPSYI 60

Query: 59   QSP----QFPVTAP--------SPPMSRPGPPP---PGALSRP----AGTPQQSFPPNVA 99
            QSP      P +AP          P+SRPGP P    G L+RP    +G PQ +FPPN+A
Sbjct: 61   QSPPSHSSAPYSAPQHSAPFPRGAPVSRPGPSPGPQSGVLARPGMAPSGPPQSTFPPNMA 120

Query: 100  PVRPFGPPVGQSLPFGSRPPPGSFPSSMGGGGPVGVPTSGVPPSSAFP------------ 147
            P RP G P+ Q+LPFGSRP  GSFPS MGG     V TS   P SAF             
Sbjct: 121  PGRPSGYPISQALPFGSRPSTGSFPSPMGGQ----VTTSSGAPPSAFASSSAAPPSAFPA 176

Query: 148  ---SSGSLTRPVGATPGARPFPLASSLPFSSGLNVAPSGASDGVTSNGPMAFAAS---GG 201
               S+G +  PV A PG     + +S P S+G  + PS A  G TSNGP  FA++   GG
Sbjct: 177  SGFSAGPVIPPVAARPG-----VFASSPLSTGPIIPPSSAPGGPTSNGPPMFASAALQGG 231

Query: 202  PRFPPAGSGAQQTRTPPAGPPSMLTSARSPQQSPSMRFPPVQQSPFSAAPQNAPPFSSAP 261
            PR+P A +  Q   TP   PP+M+ S ++P Q P+MR      +   +   N PP    P
Sbjct: 232  PRYPSADNTMQ---TPVGHPPTMM-STQAPSQPPTMR------TLLGSTAPNVPP---GP 278

Query: 262  PFSAAPQSAPPFSAAPQSTPPFSGAPSFPAPSPQGPPQVSPFGAHTWSAQP--VGPSSSI 319
            P   AP +A PFSAAPQ  PP SG               SP+G  TW  QP  V P  +I
Sbjct: 279  PVQTAP-TAMPFSAAPQGVPPPSG---------------SPYGLQTWPMQPRQVAPPPTI 322

Query: 320  PGSAQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDT 379
            PGS QP RMFGMPPP   Q+M  MPPAM QTGAP+   SKIDP QIPRP+P+++V+L++T
Sbjct: 323  PGSVQPPRMFGMPPPPPNQSMAAMPPAMSQTGAPLAGPSKIDPNQIPRPIPNTSVILHET 382

Query: 380  REGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALP 439
            R+GNQANPPPPATS+YIVRD GNCSPRYMRCTI+QIPCT DLLTTSGMQLALLVQPLALP
Sbjct: 383  RQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQLALLVQPLALP 442

Query: 440  HPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLG 499
            HPSEEPIQ+VDFG+ GPVRCSRCK YINPFMKFIDQGRRFIC+LCGFTDETPRDYHCNLG
Sbjct: 443  HPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYHCNLG 502

Query: 500  PDGRRRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAI 559
            PDGRRRDA++RPELCRGTVEFVA+KEYMVR+PMPAVFFFLIDVSMNA+QTGATAAACSAI
Sbjct: 503  PDGRRRDAEERPELCRGTVEFVASKEYMVREPMPAVFFFLIDVSMNAIQTGATAAACSAI 562

Query: 560  SQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDIIVPVS 619
            +QVI+DLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTPLQ+D+IV +S
Sbjct: 563  TQVITDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVQLS 622

Query: 620  ECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGAL 679
            ECRQHLELLLE+IP+MFQNNRTAESAFGAA++AAFLA+KSTGGKLLVFQSVLPSVGIGAL
Sbjct: 623  ECRQHLELLLENIPTMFQNNRTAESAFGAAIQAAFLAMKSTGGKLLVFQSVLPSVGIGAL 682

Query: 680  SAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISV 739
            SAREAEGR+NI++GEKE HKLLQPADKTLK MAIEFAEYQVCVDVFITTQTYVDIASI+V
Sbjct: 683  SAREAEGRTNITAGEKEAHKLLQPADKTLKTMAIEFAEYQVCVDVFITTQTYVDIASIAV 742

Query: 740  IPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFC 799
            IP+TTGGQVYYYYPFSALSDPAKLYNDLRWNIT+PQGFEAVMRVRCSQG+QVQEY GNFC
Sbjct: 743  IPRTTGGQVYYYYPFSALSDPAKLYNDLRWNITKPQGFEAVMRVRCSQGLQVQEYSGNFC 802

Query: 800  KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859
            +RIPTD+DLP IDC+KAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC
Sbjct: 803  RRIPTDVDLPGIDCDKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 862

Query: 860  TSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSS 919
            TS LSNL+RSADLDTQF CF+KQAASEIPSTPL+ VREQ+ NLC+N L SYRKFCATVSS
Sbjct: 863  TSMLSNLFRSADLDTQFACFLKQAASEIPSTPLSQVREQVTNLCINILHSYRKFCATVSS 922

Query: 920  SGQLILPEALKLLPLYTLALIKSTGLRTDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVA 979
            SGQLILPEALKLLPLYTLALIKS GLRTDGRIDDRSFWI YVS +S P A+P VYPRM+A
Sbjct: 923  SGQLILPEALKLLPLYTLALIKSIGLRTDGRIDDRSFWINYVSPLSTPLAIPLVYPRMMA 982

Query: 980  IHDLDKGE-DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISS 1038
            IHDL+  E D  +IPP +PLSSEHVSD+GIYLLENG+D LIYIG+SV+  I+ QLFGISS
Sbjct: 983  IHDLNSHEGDRPLIPPTIPLSSEHVSDDGIYLLENGDDGLIYIGNSVNPDIMRQLFGISS 1042

Query: 1039 VDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR 1075
            VD +P+QFVLQQYDNPLSKKLN++VNEIRRQRCSYLR
Sbjct: 1043 VDVIPSQFVLQQYDNPLSKKLNELVNEIRRQRCSYLR 1079

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255545386|ref|XP_002513753.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223546839|gb|EEF48336.1| Protein transport protein Sec24C, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123334|ref|XP_002319053.1| predicted protein [Populus trichocarpa] gi|222857429|gb|EEE94976.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458918|ref|XP_004147193.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356534416|ref|XP_003535751.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max] Back     alignment and taxonomy information
>gi|7270168|emb|CAB79981.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1075
TAIR|locus:21002021096 CEF "AT3G44340" [Arabidopsis t 0.699 0.686 0.688 9.6e-306
ZFIN|ZDB-GENE-030131-44871241 sec24c "SEC24 family, member C 0.679 0.588 0.355 1.5e-134
UNIPROTKB|P539921094 SEC24C "Protein transport prot 0.670 0.659 0.345 1.4e-128
RGD|15977391027 Sec24c "SEC24 family, member C 0.693 0.726 0.346 1e-125
UNIPROTKB|E1BIU01094 SEC24C "Uncharacterized protei 0.696 0.684 0.342 2.2e-125
UNIPROTKB|E1BUD81119 SEC24C "Uncharacterized protei 0.693 0.666 0.336 1.5e-124
UNIPROTKB|E2RE901096 SEC24C "Uncharacterized protei 0.700 0.687 0.343 1.2e-122
UNIPROTKB|G5EA311042 SEC24C "SEC24 related gene fam 0.644 0.665 0.342 1.7e-122
FB|FBgn02621261193 gho "ghost" [Drosophila melano 0.691 0.622 0.317 2.8e-122
UNIPROTKB|J9JHK61119 SEC24C "Uncharacterized protei 0.693 0.666 0.338 1.1e-121
TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2753 (974.2 bits), Expect = 9.6e-306, Sum P(4) = 9.6e-306
 Identities = 528/767 (68%), Positives = 608/767 (79%)

Query:   312 PVG-PSSSIPGS-AQPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPV 369
             P G P   +P +   P  ++GM P +Q Q+MT++        +P    SKID  QIPRP 
Sbjct:   296 PYGAPPQQLPSAPGTPGSIYGMGP-MQNQSMTSV-------SSP----SKIDLNQIPRPG 343

Query:   370 PSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMXX 429
              SS+ ++Y+TR  N+ANPPPP T +YI RD GN SPRYMRCTI+QIPCT DLL+TSGM  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:   430 XXXXXXXXXXHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDE 489
                       HPSEEPIQ+VDFG+ GPVRCSRCK Y+NPFMKFIDQGR+FIC+LCG+TDE
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query:   490 TPRDYHCNLXXXXXXXXXXXXXELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQT 549
             TPRDY CNL             ELCRGTV+FVATKEYMVRDPMPAV+FFLIDVSMNA+QT
Sbjct:   464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 523

Query:   550 GATAAACSAISQVISDLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTP 609
             GATAAACSAI QV+SDLPEGPRT VGIATFDSTIHFYNLKRALQQPLMLIVPDV+DVYTP
Sbjct:   524 GATAAACSAIQQVLSDLPEGPRTFVGIATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTP 583

Query:   610 LQSDIIVPVSECRQHLELLLESIPSMFQNNRTXXXXXXXXXXXXXXXXXXTGGKLLVFQS 669
             L++D+IV +SECRQHLE+LLESIP+MFQ +++                  TGGKL+VFQS
Sbjct:   584 LETDVIVQLSECRQHLEILLESIPTMFQESKSPESAFGAAVKAAFLAMKSTGGKLMVFQS 643

Query:   670 VLPSVGIGALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQ 729
             VLPSVGIGALS+REA+GR+N S+GEKE HKLLQPADKTL+ MAIEFAEYQVCVD+FITTQ
Sbjct:   644 VLPSVGIGALSSREADGRANASAGEKEAHKLLQPADKTLRTMAIEFAEYQVCVDLFITTQ 703

Query:   730 TYVDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGI 789
              YVD+ASIS IP+TTGGQVY YYPFSALSDP KLYNDLRWNITRPQGFEAVMRVRCSQGI
Sbjct:   704 AYVDMASISEIPRTTGGQVYCYYPFSALSDPPKLYNDLRWNITRPQGFEAVMRVRCSQGI 763

Query:   790 QVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRR 849
             QVQEY GNFCKRIPTDIDLPAIDC+KAIMVTLKHDDKLQDG+EC FQCALLYTT+ G+RR
Sbjct:   764 QVQEYSGNFCKRIPTDIDLPAIDCDKAIMVTLKHDDKLQDGAECGFQCALLYTTISGERR 823

Query:   850 IRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVS 909
             IRV  LS+PCT+ LSNL+RSADLD+QF C +KQAA+EIPS  L  V+EQ  N C+  L S
Sbjct:   824 IRVLNLSIPCTNMLSNLFRSADLDSQFACMLKQAANEIPSKALPLVKEQATNDCITILHS 883

Query:   910 YRKFCATVSSSGQXXXXXXXXXXXXXXXXXXXSTGLRTDGRIDDRSFWITYVSSVSIPFA 969
             YRKFCATV+S+GQ                     GLR DGRIDDRSFWI +VSS+S P A
Sbjct:   884 YRKFCATVTSTGQLILPEALKLLPLYTLALTKGVGLRMDGRIDDRSFWINHVSSLSTPLA 943

Query:   970 VPFVYPRMVAIHDLDKGE-DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSS 1028
             +P VYPRM+A+HDLD  + + +++P  +PL SEH+SDEG+Y LENGED LIYIG SV+S 
Sbjct:   944 IPLVYPRMIAVHDLDANDNEENVVPCPIPLQSEHLSDEGVYFLENGEDGLIYIGESVNSD 1003

Query:  1029 ILHQLFGISSVDEVPTQFVLQQYDNPLSKKLNDVVNEIRRQRCSYLR 1075
             IL +LF + S  E+P+Q+VLQ+YDN LSKK NDVVNEIRRQR SYLR
Sbjct:  1004 ILQKLFNVRSAAELPSQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLR 1050
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0030127 "COPII vesicle coat" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1597739 Sec24c "SEC24 family, member C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G5EA31 SEC24C "SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0262126 gho "ghost" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P53992SC24C_HUMANNo assigned EC number0.34850.90410.8884yesno
Q9M081SC24B_ARATHNo assigned EC number0.65450.93670.9324yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.70.277.1
hypothetical protein (1076 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_XV0440
hypothetical protein (301 aa)
     •• 0.848
estExt_fgenesh4_pg.C_LG_X0913
SubName- Full=Putative uncharacterized protein; (301 aa)
     •• 0.847
estExt_fgenesh4_pg.C_LG_IX1026
hypothetical protein (1105 aa)
     •• 0.818
gw1.I.1579.1
hypothetical protein (1105 aa)
     •• 0.816

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1075
COG5028861 COG5028, COG5028, Vesicle coat complex COPII, subu 1e-157
cd01479244 cd01479, Sec24-like, Sec24-like: Protein and membr 1e-102
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 8e-93
cd01468239 cd01468, trunk_domain, trunk domain 1e-84
PTZ003951560 PTZ00395, PTZ00395, Sec24-related protein; Provisi 5e-45
pfam0803386 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom 1e-32
pfam04815103 pfam04815, Sec23_helical, Sec23/Sec24 helical doma 8e-22
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 6e-21
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 6e-20
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 2e-15
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 7e-15
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-13
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 4e-13
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 1e-12
PTZ00395 1560 PTZ00395, PTZ00395, Sec24-related protein; Provisi 2e-12
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 5e-12
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 1e-11
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-11
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-10
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 1e-09
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-08
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 1e-07
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 4e-07
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 5e-07
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 6e-07
cd01478267 cd01478, Sec23-like, Sec23-like: Protein and membr 6e-07
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 7e-07
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 8e-07
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 2e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 4e-06
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 5e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 5e-06
pfam0062676 pfam00626, Gelsolin, Gelsolin repeat 5e-06
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 7e-06
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 7e-06
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 8e-06
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 8e-06
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-05
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 1e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 1e-05
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 1e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-05
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 2e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 3e-05
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 4e-05
pfam04652315 pfam04652, DUF605, Vta1 like 4e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 5e-05
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 7e-05
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-04
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 1e-04
PRK14959624 PRK14959, PRK14959, DNA polymerase III subunits ga 1e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 2e-04
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 2e-04
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 2e-04
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 2e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 3e-04
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 3e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 4e-04
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 5e-04
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 5e-04
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 5e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 6e-04
pfam07271279 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 6e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 7e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 8e-04
PRK03427333 PRK03427, PRK03427, cell division protein ZipA; Pr 8e-04
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.001
pfam04652315 pfam04652, DUF605, Vta1 like 0.001
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 0.001
pfam0154176 pfam01541, GIY-YIG, GIY-YIG catalytic domain 0.001
PHA03379935 PHA03379, PHA03379, EBNA-3A; Provisional 0.001
pfam03154979 pfam03154, Atrophin-1, Atrophin-1 family 0.002
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.002
pfam04652315 pfam04652, DUF605, Vta1 like 0.002
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.002
PRK14959624 PRK14959, PRK14959, DNA polymerase III subunits ga 0.002
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 0.002
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.002
PRK14951618 PRK14951, PRK14951, DNA polymerase III subunits ga 0.003
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.003
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.004
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.004
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.004
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 0.004
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.004
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.004
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  487 bits (1256), Expect = e-157
 Identities = 278/818 (33%), Positives = 438/818 (53%), Gaps = 48/818 (5%)

Query: 268  QSAPPFSA-APQSTPPFSGAPSFPAPSPQGPPQVSPFGA---HTWSAQPVGPSSSIPGSA 323
            +SA P  A A  S       P    P  Q   +     A   H   A    PS   P + 
Sbjct: 25   KSARPHRAYANFSAGQMGMPPYTTPPLQQQSRRQIDQAATAMHNTGANNPAPSVMSP-AF 83

Query: 324  QPSRMFGMPPPLQTQTMTNMPPAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGN 383
            Q  + F  P        T   P       P+      + Q  P         + D     
Sbjct: 84   QSQQKFSSPYGGSMADGTAPKPTN-----PLVPVDLFEDQPPP---------ISDLFLPP 129

Query: 384  QANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSE 443
                PP  T+     +  NCSP+Y+R T+  IP TNDLL  S +   L+++P    +P E
Sbjct: 130  PPIVPPLTTNFVGS-EQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEE 188

Query: 444  EPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGR 503
            +P+ +V+  D   VRC RC++YINPF++FI+QGR++ C++C   ++ P  +    GP+  
Sbjct: 189  DPVPLVE--DGSIVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDP 246

Query: 504  RRDADDRPELCRGTVEFVATKEYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVI 563
            R D   RPEL  G V+F+A KEY +R P P V+ FLIDVS  A++ G   AA  AI + +
Sbjct: 247  RSDRYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENL 306

Query: 564  SDLPE-GPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQS-DIIVPVSEC 621
              +P   PRT + I  FDS++HF+ L   L +  MLIV D+++ + P  S   ++P+  C
Sbjct: 307  DQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQ-MLIVSDLDEPFLPFPSGLFVLPLKSC 365

Query: 622  RQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSA 681
            +Q +E LL+ +P +FQ+N++ ++A G A+KAA   +  TGGK++VF S LP++GIG L  
Sbjct: 366  KQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQL 425

Query: 682  REAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIP 741
            RE          +KE   LL   D   K  AIE ++  + VD+F+T++ Y+D+A++S + 
Sbjct: 426  RE----------DKE-SSLLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLC 474

Query: 742  KTTGGQVYYYYPFSA--LSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFC 799
            + TGGQ Y+Y  FSA   +D  KL NDL  +++   G+EAVMRVRCS G++V  ++GNF 
Sbjct: 475  RYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFF 534

Query: 800  KRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPC 859
             R         +  + +++V    D+KL   S+  FQ ALLYT   G+RRIRV  LSLP 
Sbjct: 535  NRSSDLCAFSTMPRDTSLLVEFSIDEKLM-TSDVYFQVALLYTLNDGERRIRVVNLSLPT 593

Query: 860  TSNLSNLYRSADLDTQFTCFM-KQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVS 918
            +S++  +Y SAD      C + K+A+++  ++ L   R  +    V+ L +Y+K     +
Sbjct: 594  SSSIREVYASADQLA-IACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSN 652

Query: 919  SSGQLILPEALKLLPLYTLALIKSTGLRTDG-RIDDRSFWITYVSSVSIPFAVPFVYPRM 977
            +S QL LP  LKLLPL  LAL+KS+  R+     D R   +  ++S+ +   +  +YP +
Sbjct: 653  TSTQLPLPANLKLLPLLMLALLKSSAFRSGSTPSDIRISALNRLTSLPLKQLMRNIYPTL 712

Query: 978  VAIHDL--DKG---EDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQ 1032
             A+HD+  + G   E   ++P  +  +S  +   G+YL++ G+   ++ G     S+L  
Sbjct: 713  YALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQD 772

Query: 1033 LFGISSVDEVPT-QFVLQQYDNPLSKKLNDVVNEIRRQ 1069
            LFG+ S+ ++P+ +F L    N  ++++ +++ E+R  
Sbjct: 773  LFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSV 810

Length = 861
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional Back     alignment and domain information
>gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain Back     alignment and domain information
>gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|216559 pfam01541, GIY-YIG, GIY-YIG catalytic domain Back     alignment and domain information
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1075
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
KOG1985887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
PTZ003951560 Sec24-related protein; Provisional 100.0
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
PLN00162761 transport protein sec23; Provisional 100.0
KOG1986745 consensus Vesicle coat complex COPII, subunit SEC2 100.0
COG5047755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 100.0
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 100.0
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
PF04815103 Sec23_helical: Sec23/Sec24 helical domain; InterPr 99.85
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 99.82
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.5
PRK13685326 hypothetical protein; Provisional 98.74
cd01453183 vWA_transcription_factor_IIH_type Transcription fa 98.63
cd01467180 vWA_BatA_type VWA BatA type: Von Willebrand factor 98.57
cd01451178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 98.51
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 98.46
cd01456206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 98.44
TIGR00868863 hCaCC calcium-activated chloride channel protein 1 98.44
cd01465170 vWA_subgroup VWA subgroup: Von Willebrand factor t 98.44
cd01463190 vWA_VGCC_like VWA Voltage gated Calcium channel li 98.43
PF13519172 VWA_2: von Willebrand factor type A domain; PDB: 3 98.4
TIGR03436296 acidobact_VWFA VWFA-related Acidobacterial domain. 98.27
cd01474185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 98.23
cd01472164 vWA_collagen von Willebrand factor (vWF) type A do 98.22
TIGR03788596 marine_srt_targ marine proteobacterial sortase tar 98.2
cd01461171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 98.19
cd01470198 vWA_complement_factors Complement factors B and C2 98.11
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 97.96
cd01452187 VWA_26S_proteasome_subunit 26S proteasome plays a 97.96
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 97.95
PTZ00441576 sporozoite surface protein 2 (SSP2); Provisional 97.93
cd01480186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 97.92
PF13768155 VWA_3: von Willebrand factor type A domain 97.92
cd01471186 vWA_micronemal_protein Micronemal proteins: The To 97.9
TIGR02031589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 97.82
TIGR02442633 Cob-chelat-sub cobaltochelatase subunit. A number 97.77
PF00092178 VWA: von Willebrand factor type A domain; InterPro 97.77
PRK13406584 bchD magnesium chelatase subunit D; Provisional 97.75
cd01469177 vWA_integrins_alpha_subunit Integrins are a class 97.74
cd01482164 vWA_collagen_alphaI-XII-like Collagen: The extrace 97.74
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 97.73
cd01477193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 97.7
smart00327177 VWA von Willebrand factor (vWF) type A domain. VWA 97.69
PHA032473151 large tegument protein UL36; Provisional 97.62
cd01473192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 97.57
COG1240261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 97.55
PHA032473151 large tegument protein UL36; Provisional 97.55
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 97.43
cd01481165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 97.42
cd01458218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 97.38
cd01476163 VWA_integrin_invertebrates VWA_integrin (invertebr 97.35
cd01464176 vWA_subfamily VWA subfamily: Von Willebrand factor 97.22
cd01454174 vWA_norD_type norD type: Denitrifying bacteria con 97.06
PF04056193 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro 97.05
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 96.7
COG4245207 TerY Uncharacterized protein encoded in toxicity p 96.33
KOG2884259 consensus 26S proteasome regulatory complex, subun 96.15
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 96.09
TIGR00578584 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit 95.78
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 95.69
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 95.36
cd01457199 vWA_ORF176_type VWA ORF176 type: Von Willebrand fa 94.97
cd01460266 vWA_midasin VWA_Midasin: Midasin is a member of th 93.91
KOG19841007 consensus Vesicle coat complex COPII, subunit SFB3 93.76
KOG0443 827 consensus Actin regulatory proteins (gelsolin/vill 93.74
PF03731224 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte 93.51
cd01455191 vWA_F11C1-5a_type Von Willebrand factor type A (vW 93.32
COG5148243 RPN10 26S proteasome regulatory complex, subunit R 92.86
smart00187423 INB Integrin beta subunits (N-terminal portion of 92.73
KOG2807378 consensus RNA polymerase II transcription initiati 92.58
TIGR00627279 tfb4 transcription factor tfb4. This family is bas 92.37
PF03850276 Tfb4: Transcription factor Tfb4; InterPro: IPR0046 91.15
COG2425437 Uncharacterized protein containing a von Willebran 90.57
PF00362426 Integrin_beta: Integrin, beta chain; InterPro: IPR 90.22
KOG0443 827 consensus Actin regulatory proteins (gelsolin/vill 89.05
PF06707205 DUF1194: Protein of unknown function (DUF1194); In 87.44
PRK10997487 yieM hypothetical protein; Provisional 86.71
KOG3768 888 consensus DEAD box RNA helicase [General function 81.95
KOG2353 1104 consensus L-type voltage-dependent Ca2+ channel, a 81.91
KOG2487314 consensus RNA polymerase II transcription initiati 80.05
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-193  Score=1670.46  Aligned_cols=717  Identities=53%  Similarity=0.917  Sum_probs=693.2

Q ss_pred             CCCCCCCCCCCCCCCccCCccccccCC-CCCCCCCCCCCCceeecCCCCCCCCceeeeccccCCCHHHhhhcCCceEEEE
Q 001452          355 PASSKIDPQQIPRPVPSSTVVLYDTRE-GNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMQLALLV  433 (1075)
Q Consensus       355 ~~~~~idp~~iP~P~~~~~~~~~~t~~-~~~~~~PP~~tt~~~~~D~gN~sP~yiR~T~~~iP~t~~ll~~~~LPlgivV  433 (1075)
                      ..++||||++||+|+++...+.+.++. +....+||++||+|++.|||||||||||||+|+||+|.|+++.++||||+||
T Consensus       236 ~~~~rldp~~iPs~~qv~~~d~~~~r~~~~~~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvI  315 (1007)
T KOG1984|consen  236 PPPQRLDPNAIPSPPQVSIEDDSSFRSTDTRAQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVI  315 (1007)
T ss_pred             CccccCChhhCCCchhcccchhhhhhcCCccCCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEe
Confidence            366899999999999985444444442 3445689999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCceeccCCCCCCcccCCCCceecCceEEEecCCeEEecCCCCCCCCCcccccCCCCCCCCCCCCCCCCc
Q 001452          434 QPLALPHPSEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPEL  513 (1075)
Q Consensus       434 ~Pfa~~~~~e~pvPvvd~g~~~pvRC~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~RPEL  513 (1075)
                      +|||.+++.|+++++||+++.+++||+||||||||||+|+++||+|+||||+.+|+++++||++|+++|||+|+++||||
T Consensus       316 qPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaYinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL  395 (1007)
T KOG1984|consen  316 QPFATLTPNEAPVPVVDLGESGPVRCNRCKAYINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPEL  395 (1007)
T ss_pred             cccccCCcccCCCceecCCCCCCcchhhhhhhcCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccEEEEeccccccC--CCCCcEEEEEEEcchhHHhhhHHHHHHHHHHHHHhcCC-CCCCcEEEEEEeCCeEEEEecCC
Q 001452          514 CRGTVEFVATKEYMVR--DPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNLKR  590 (1075)
Q Consensus       514 ~~gtVEfvap~eY~~r--~p~pp~yvFvIDvS~~av~sG~l~~v~~aI~~~L~~Lp-~~~rt~VGiITFDs~VhfYnl~~  590 (1075)
                      ++|+|||+|+++||++  +|++++|||+||||++|+++|++.++|++|+++|+.|+ ++++++|||||||++|||||+++
T Consensus       396 ~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s  475 (1007)
T KOG1984|consen  396 CLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSS  475 (1007)
T ss_pred             cccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCc
Confidence            9999999999999998  89999999999999999999999999999999999999 58899999999999999999999


Q ss_pred             CCCCceEeecCCccccccCCcccceeehHHhHHHHHHHHhhcCccccCCCCccchHHHHHHHHHHHHHhc-CCEEEEEec
Q 001452          591 ALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKST-GGKLLVFQS  669 (1075)
Q Consensus       591 ~l~qpqmlVvsDldd~FvPl~~~lLv~l~esr~~I~~lLd~Lp~~f~~~~~~~~~lG~AL~aA~~lL~~~-GGkIivF~s  669 (1075)
                      +++|++|+||+|++|+|+|+.++|||+..|++.+|+.|||+|+.||.+.+.+++|+|+||+||.++||.. ||||+||++
T Consensus       476 ~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~vF~s  555 (1007)
T KOG1984|consen  476 NLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAADGGKLFVFHS  555 (1007)
T ss_pred             cccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccCCceEEEEec
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987 999999999


Q ss_pred             CCCCcCcc-cccccccccCCCCCCCccccccccchhHHHHHHHHHHHHhcCcEEEEEEecCCccCccccccccccccceE
Q 001452          670 VLPSVGIG-ALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQV  748 (1075)
Q Consensus       670 g~Pt~GpG-~L~~re~~~r~~~~~gt~ke~~ll~pa~~FYk~LA~~~~~~gIsVDlFl~s~~~~DlatL~~La~~TGG~v  748 (1075)
                      .+||+|.| +|+.|+|.+    +++|+|||+|+.+++++|++||++|++.|||||||++++.|+|+|+|+.+++.|||+|
T Consensus       556 ~Lpt~g~g~kl~~r~D~~----l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~v  631 (1007)
T KOG1984|consen  556 VLPTAGAGGKLSNRDDRR----LIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLTPNAYVDVATLGVVPALTGGQV  631 (1007)
T ss_pred             ccccccCcccccccchhh----hhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEcccceeeeeeecccccccCcee
Confidence            99999987 999998866    8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccchHHHHHHHHHhccCCccccceEEEEeCCCceEEeeeCCcccCCCCceeecCCCCCCeEEEEEEecCCCC
Q 001452          749 YYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQ  828 (1075)
Q Consensus       749 ~~Y~~F~~~~d~~kL~~dL~r~Ltr~~g~~a~mrVR~S~GL~V~~~~Gnf~~rs~~~~~lp~id~dtSi~~el~~d~~L~  828 (1075)
                      |+|.+|..++|..+|.+||+|++++++||+|+||||||+||++.+|||||++++++|++|+.+|+||+++++|+||++|+
T Consensus       632 y~Y~~F~a~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq  711 (1007)
T KOG1984|consen  632 YKYYPFQALTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQDFYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQ  711 (1007)
T ss_pred             EEecchhhcccHHHHHHHHHHhcccceeeeeEEEEeecCceeeeeeechhhhcCCCCccccccccCceeEEEEecccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEEEEEecCCcEEEEEEecccCCCCCHHHHHhhcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 001452          829 DGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALV  908 (1075)
Q Consensus       829 ~~~~~~fQ~AlLYTt~~GeRrIRV~Tl~lpVts~l~~vf~~aD~dai~~~laK~a~~~~l~~~l~d~R~~L~~~lv~iL~  908 (1075)
                      ++.+++||+|||||+.+|+|||||||++++||++++|+||++|.|+++++|+|.|+..+.++.++++|+.|+++|++||+
T Consensus       712 ~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~  791 (1007)
T KOG1984|consen  712 DGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTDPLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILA  791 (1007)
T ss_pred             CCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCccHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCCCcccchhhcchHHHHHHHhhcccCCC-CCCCchHHHHHHHHHcCCChhhhcccccceEEEeccCCCCC
Q 001452          909 SYRKFCATVSSSGQLILPEALKLLPLYTLALIKSTGLR-TDGRIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDLDKGE  987 (1075)
Q Consensus       909 ~YRk~ca~~~s~gqLiLPesLklLPlyil~LlKS~~Lr-~~~s~DeR~~~~~~l~s~~v~~~~~~lYPrL~~lh~l~~~d  987 (1075)
                      +|||+|++..+++||||||+||+||+|++||+||.+|+ .+++.|+|+|++.++.++++++++.+|||||++||+++.+|
T Consensus       792 ~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~~~~~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~d  871 (1007)
T KOG1984|consen  792 SYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRPQEIRTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIED  871 (1007)
T ss_pred             HHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccccccccchhHHHHHHhhcccHHhhhhhhccceeeeecccccc
Confidence            99999999999999999999999999999999999999 89999999999999999999999999999999999997663


Q ss_pred             -CCCCCCCcccCccccccCCcEEEEEcCCeEEEEeCCCCCHHHHHHhhCCCCCCCCCC-ccccCCCCCHHHHHHHHHHHH
Q 001452          988 -DGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSVDEVPT-QFVLQQYDNPLSKKLNDVVNE 1065 (1075)
Q Consensus       988 -~~~~lP~~l~LS~e~L~~~GiYLLD~G~~i~LwvG~~v~p~ll~~lFGv~s~~~l~~-~~~lp~~d~~~s~~l~~iI~~ 1065 (1075)
                       .+..+|..+|+|+|+|+++||||||||+++|||||++|+++|+|+||+|++.++++. ..+||++||.+|+++|++|+.
T Consensus       872 tl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~  951 (1007)
T KOG1984|consen  872 TLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISL  951 (1007)
T ss_pred             ccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHH
Confidence             345789999999999999999999999999999999999999999999999999994 478999999999999999999


Q ss_pred             HHHhccCCCC
Q 001452         1066 IRRQRCSYLR 1075 (1075)
Q Consensus      1066 lr~~r~~~~~ 1075 (1075)
                      ||+.|.++|+
T Consensus       952 i~~~r~~~l~  961 (1007)
T KOG1984|consen  952 IRRQRSSELP  961 (1007)
T ss_pred             HHhccccccc
Confidence            9999998874

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family Back     alignment and domain information
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway Back     alignment and domain information
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region) Back     alignment and domain information
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00627 tfb4 transcription factor tfb4 Back     alignment and domain information
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair Back     alignment and domain information
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ] Back     alignment and domain information
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton] Back     alignment and domain information
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length Back     alignment and domain information
>PRK10997 yieM hypothetical protein; Provisional Back     alignment and domain information
>KOG3768 consensus DEAD box RNA helicase [General function prediction only] Back     alignment and domain information
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG2487 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription; Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1075
3eh2_A766 Crystal Structure Of The Human Copii-Coat Protein S 1e-120
3efo_B770 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-106
2nup_B753 Crystal Structure Of The Human Sec23a24A HETERODIME 1e-99
3egd_B748 Crystal Structure Of The Mammalian Copii-Coat Prote 2e-99
3eh1_A751 Crystal Structure Of The Human Copii-Coat Protein S 7e-99
1m2v_B926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 4e-72
1pcx_A810 Crystal Structure Of The Copii Coat Subunit, Sec24, 8e-71
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure 
Iteration: 1

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/707 (34%), Positives = 374/707 (52%), Gaps = 19/707 (2%)
Query: 382  GNQANPPPPATSEYIVRDMGNCSPRYMRCTISQIPCTNDLLTTSGMXXXXXXXXXXXXHP 441
            G +   PP  T+ ++V+D GN SPRY+RCT   IPCT+D+   + +             P
Sbjct: 20   GVRGQVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPP 79
Query: 442  SEEPIQIVDFGDMGPVRCSRCKAYINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLXXX 501
             E    +VD G+ GP+RC+RCKAY+ PFM+FI+ GRRF C  C   ++ P  Y  +L   
Sbjct: 80   EEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHT 139
Query: 502  XXXXXXXXXXELCRGTVEFVATKEYMVRD--PMPAVFFFLIDVSMNALQTGATAAACSAI 559
                      EL  G+ EF+AT +Y   +  P P  F F+IDVS NA++TG     C  +
Sbjct: 140  GKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEEL 199
Query: 560  SQVISDLP-----EGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDVEDVYTPLQSDI 614
              ++  LP     E     VG  T++  +HFYN+K +L QP M++V DV D++ PL    
Sbjct: 200  KSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGF 259
Query: 615  IVPVSECRQHLELLLESIPSMFQNNRTXXXXXX--XXXXXXXXXXXXTGGKLLVFQSVLP 672
            +V V+E R  +  LL+ IP MF + R                       GKL +F + LP
Sbjct: 260  LVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLP 319
Query: 673  SVGI-GALSAREAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTY 731
                 G L  R+   R  I++ +++T  L QP     + +A E      CVD+F+    Y
Sbjct: 320  IAEAPGKLKNRD--DRKLINTDKEKT--LFQPQTGAYQTLAKECVAQGCCVDLFLFPNQY 375
Query: 732  VDIASISVIPKTTGGQVYYYYPFSALSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQV 791
            VD+A++SV+P+ TGG VY Y  F   +D  +  +DLR ++ +  GF+AVMRVR S GI+ 
Sbjct: 376  VDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRA 435
Query: 792  QEYHGNFCKRIPTDIDLPAIDCNKAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIR 851
             ++ G F     TD++L  +D +K + V  KHDD+L + S    QCALLYT+  GQRR+R
Sbjct: 436  VDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLR 495
Query: 852  VTTLSLPCTSNLSNLYRSADLDTQFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYR 911
            +  L+L C + L++LYR+ + DT      K A   + ++P+  VR+ ++  C   L  YR
Sbjct: 496  IHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYR 555
Query: 912  KFCATVSSSGQXXXXXXXXXXXXXXXXXXXSTGLRTDGRI--DDRSFWITYVSSVSIPFA 969
            K CA+ SS+GQ                   S  L+    +  DDR++    V+S+ +   
Sbjct: 556  KNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVTET 615
Query: 970  VPFVYPRMVAIHDLDKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSI 1029
              F YPR++ +       + +  PP +  S E +S+  IYLLENG +  +++G+SV   +
Sbjct: 616  NVFFYPRLLPLT--KSPVESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGV 673
Query: 1030 LHQLFGISSVDEVPTQF-VLQQYDNPLSKKLNDVVNEIRRQRCSYLR 1075
            +  LF +SS  ++ +   VL   DNPLSKK+  +++ +R QR  Y++
Sbjct: 674  VQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLRAQRSRYMK 720
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1075
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 0.0
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-09
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-08
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-05
3efo_B770 SEC24 related gene family, member D; copii, coat p 0.0
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 0.0
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 1e-180
3eh1_A751 Protein transport protein SEC24B; copii coat prote 1e-179
2nut_A769 Protein transport protein SEC23A; human copii SEC2 1e-142
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 1e-131
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 7e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-11
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 5e-11
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 5e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 6e-12
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-10
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-08
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 5e-07
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 1e-04
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 2e-06
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 4e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 6e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 3e-05
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 1e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 5e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 6e-05
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 2e-04
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 6e-04
1kxf_A264 Sindbis virus capsid protein; chymotrypsin-like se 6e-04
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
 Score =  642 bits (1657), Expect = 0.0
 Identities = 215/873 (24%), Positives = 398/873 (45%), Gaps = 40/873 (4%)

Query: 227  SARSPQQSPSMRFPPVQQSPFSAAPQN--APPFSSAPPFSAAPQSAPPFSAAPQSTPPFS 284
            S    +  P  +    Q +     P     P   +A   S      PP  A P       
Sbjct: 2    SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 285  GAPSFPAPSPQGPPQVSPFGAHTWSAQPVGPSSSIPGSAQPSRMFGMPPPLQTQTMTNMP 344
              P+      Q     +          P+          QP     M  PLQ Q      
Sbjct: 62   LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDP---NAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 345  PAMGQTGAPMPASSKIDPQQIPRPVPSSTVVLYDTREGNQANPPPPATSEYIVRDMGNCS 404
            PA GQ  A M  + +   Q  P  + +                  P     +  ++ N S
Sbjct: 119  PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNAS 178

Query: 405  PRYMRCTISQIPCTNDLLTTSGMQLALLVQPLALPHPSEEPIQIVDFGDMGPVRCSRCKA 464
            P Y+R T++ +P  + LL  S +   L+++P    +   +P  + + G    VRC RC++
Sbjct: 179  PDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGL--IVRCRRCRS 236

Query: 465  YINPFMKFIDQGRRFICSLCGFTDETPRDYHCNLGPDGRRRDADDRPELCRGTVEFVATK 524
            Y+NPF+ FI+QGRR+ C+ C   ++ P     +       +   DR E+    +E++A K
Sbjct: 237  YMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSD--PNDPKSRYDRNEIKCAVMEYMAPK 294

Query: 525  EYMVRDPMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTI 583
            EY +R P PA + FLIDVS +++++G  A   + + Q +  +P    RT + I   D+ I
Sbjct: 295  EYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAI 354

Query: 584  HFYNLKR-------ALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMF 636
            H++ +         +  Q  M+ + D+E+ + P  + ++V +  CRQ++E LL  IP +F
Sbjct: 355  HYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIF 414

Query: 637  QNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKE 696
            Q+N     A G A+K+A+  +   GGK++V    LP++GIG L  R   G  N     KE
Sbjct: 415  QSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNT---SKE 471

Query: 697  THKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSA 756
            T +LL   D   K   I+ ++ Q+ VD+F+ ++ Y+D+AS+S + + T GQ ++Y  FS 
Sbjct: 472  TAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSG 531

Query: 757  --LSDPAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYHGNFCKRIPTDIDLPAIDCN 814
               +D  K   +   +I+     E VMR R S G+++  ++G+F  R         +  +
Sbjct: 532  KNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRD 591

Query: 815  KAIMVTLKHDDKLQDGSECAFQCALLYTTVYGQRRIRVTTLSLPCTSNLSNLYRSADLDT 874
            ++ +  +  D+ +        Q A+L +    QRRIR+ TL++P T +L+ +Y SAD   
Sbjct: 592  QSYLFEVNVDESIMADYCY-VQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLA 650

Query: 875  QFTCFMKQAASEIPSTPLANVREQMMNLCVNALVSYRKFCATVSSSG--QLILPEALKLL 932
              + +  +A  +  ++ L + R  +     + L +Y+K     +++G   L L   L++ 
Sbjct: 651  IASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMF 710

Query: 933  PLYTLALIKSTGLRTDG-RIDDRSFWITYVSSVSIPFAVPFVYPRMVAIHDL-------- 983
            PL   +L K    R+     D R+  +  + S+ + + +  +YP + ++HD+        
Sbjct: 711  PLLMHSLTKHMAFRSGIVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPV 770

Query: 984  ----DKGEDGSIIPPFLPLSSEHVSDEGIYLLENGEDALIYIGSSVDSSILHQLFGISSV 1039
                 +     ++P  +  +S      G+YL++NG +  +++G     +++  +FG   +
Sbjct: 771  QTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDI 830

Query: 1040 DEVPT--QFVLQQYDNPLSKKLNDVVNEIRRQR 1070
             ++P   Q +    ++  ++++ +++N++R   
Sbjct: 831  FDIPIGKQEIPVVENSEFNQRVRNIINQLRNHD 863
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 Back     alignment and structure
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1075
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 2e-76
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 3e-57
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 3e-34
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 3e-12
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 9e-32
d1pd0a1107 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar 7e-23
d1pd0a4173 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha 8e-23
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 1e-18
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  249 bits (637), Expect = 2e-76
 Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 13/253 (5%)

Query: 531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLP-EGPRTMVGIATFDSTIHFYNL- 588
           P PA + FLIDVS +++++G  A   + + Q +  +P    RT + I   D+ IH++ + 
Sbjct: 1   PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60

Query: 589 ------KRALQQPLMLIVPDVEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTA 642
                 + +  Q  M+ + D+E+ + P  + ++V +  CRQ++E LL  IP +FQ+N   
Sbjct: 61  LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120

Query: 643 ESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAREAEGRSNISSGEKETHKLLQ 702
             A G A+K+A+  +   GGK++V    LP++GIG L  R   G  N S       +LL 
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETA---QLLS 177

Query: 703 PADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSA--LSDP 760
             D   K   I+ ++ Q+ VD+F+ ++ Y+D+AS+S + + T GQ ++Y  FS    +D 
Sbjct: 178 CQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI 237

Query: 761 AKLYNDLRWNITR 773
            K   +   +I+ 
Sbjct: 238 VKFSTEFAKHISM 250
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1075
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.95
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.9
d1pd0a1107 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.86
d1pd0a4173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.84
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.72
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.38
d2qtva1103 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.16
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.1
d1shux_181 Capillary morphogenesis protein 2 domain {Human (H 97.99
d1q0pa_209 Complement factor B domain {Human (Homo sapiens) [ 97.8
d1n3ya_189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 97.77
d1atza_184 von Willebrand factor A3 domain, vWA3 {Human (Homo 97.75
d1ijba_202 von Willebrand factor A1 domain, vWA1 {Human (Homo 97.68
d1tyeb2248 Integrin beta A domain {Human (Homo sapiens) [TaxI 97.52
d1jeyb2236 Ku80 subunit N-terminal domain {Human (Homo sapien 97.42
d1jeya2220 Ku70 subunit N-terminal domain {Human (Homo sapien 97.38
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 97.19
d1mjna_179 Integrin CD11a/CD18 (Leukocyte function associated 97.09
d1pt6a_192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 97.06
d1mf7a_194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 97.0
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 96.95
d1v7pc_193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 96.71
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 96.61
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 96.53
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 96.39
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 96.15
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 96.03
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 95.84
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 95.46
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=401.86  Aligned_cols=242  Identities=33%  Similarity=0.588  Sum_probs=226.4

Q ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCEEEEEEECCEEEEEECCCC-------CCCCEEEECCC
Q ss_conf             99828999997635588541999999999998852999-99728999994996999955877-------89862862279
Q 001452          531 PMPAVFFFLIDVSMNALQTGATAAACSAISQVISDLPE-GPRTMVGIATFDSTIHFYNLKRA-------LQQPLMLIVPD  602 (1075)
Q Consensus       531 p~pp~yvFvIDVS~~av~sG~l~~v~~sI~~~L~~Lp~-~~rt~VGiITFDs~Ihfynl~~~-------l~qpqmlVvsD  602 (1075)
                      |+||+|+||||+|+.++++|+++.+|++|+++|+.+++ +++++|||||||++||||+++..       +.+++|++++|
T Consensus         1 P~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~d   80 (252)
T d1pd0a3           1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD   80 (252)
T ss_dssp             CCCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred             CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf             99988999998987886663999999999999985737899828999997998899976677655454556652111233


Q ss_pred             CCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             64334677665404127769999999953674324788753128999999999987049879999147998676533245
Q 001452          603 VEDVYTPLQSDIIVPVSECRQHLELLLESIPSMFQNNRTAESAFGAAVKAAFLALKSTGGKLLVFQSVLPSVGIGALSAR  682 (1075)
Q Consensus       603 ldd~FvPlp~~lLv~l~Esr~~I~~lLe~Lp~~f~~~~~~~~~lG~AL~aA~~lLk~~GGKIivF~ss~Pt~GpGaL~~R  682 (1075)
                      ++|+|+|++++|+++++|+++.|+++|++|++++.+++..++|+|+||++|..+|+..||||++|++++||.|+|+|+.|
T Consensus        81 l~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~gGkI~~f~sg~pt~GpG~l~~r  160 (252)
T d1pd0a3          81 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR  160 (252)
T ss_dssp             TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC-
T ss_pred             HHHCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             44305788763044589999999999985702114688875327999999999986379789999467997788601326


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC--CCH
Q ss_conf             433677778884110123540589999999999836819999981687447110244444565069997378766--635
Q 001452          683 EAEGRSNISSGEKETHKLLQPADKTLKAMAIEFAEYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSAL--SDP  760 (1075)
Q Consensus       683 e~~~~~~~~~gt~ke~~Ll~p~~~fYk~LA~~~~~~gIsVDlFl~s~~yvDiatL~~L~~~TGG~v~~Y~~F~~~--~d~  760 (1075)
                      ++...   ...++++++++.++++||++||.+|++++|+||+|+++.+++|+++|+.|++.|||.+|||++|+..  +|.
T Consensus       161 ~~~~~---~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~~~~y~~f~~~~~~d~  237 (252)
T d1pd0a3         161 NESGV---VNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDI  237 (252)
T ss_dssp             ----------------------CCHHHHHHHHHTTTTEEEEEEEEESBCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHH
T ss_pred             CCCCC---CCCCCCCHHCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf             55222---367642011036068999999999987897899996256556808886576507826999589776467789


Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             789999998216884
Q 001452          761 AKLYNDLRWNITRPQ  775 (1075)
Q Consensus       761 ~kL~~dL~r~Ltr~~  775 (1075)
                      .||.+||.|+|+|++
T Consensus       238 ~k~~~dl~~~l~~~~  252 (252)
T d1pd0a3         238 VKFSTEFAKHISMDF  252 (252)
T ss_dssp             HHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999997526779
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure