Citrus Sinensis ID: 001486

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQIEKWNNSSKQVCD
ccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHcccccccccc
ccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccHHHHHHHcccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccEEEEEEHcHccHHHHHcccccccccccHcHcccccccccccEEEEEccccccccccHHHHHcHHHHHHHcccccHcccccHHHHHHccccccccccccccccccccccccccccccccHHccccccEccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHHcccccccccccHHccHHHHHHHHccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHccccccccccc
mevqisnleslsaepnspvgfgkqGLEEFIAEGSLDFDEWTSLLSEIEnscpddieMIGLVYDSFLaefplcygywrkyadhkARLCSIDKVVEVFERAVQSATYSVDVWFHYCSlsmstfedpnDVRRLFKRALSFvgkdylchTMWDKYIEFEISQQRWSSLAQIFVQTLrfpskklhHYYDSFKKLAGAWKEELECESDSAMEFQSELvlegevpayykddetssvikdlldpsvdLVRSKAIQKYRFIGEQIYKEASQLDEKINCFenlirrpyfhvkplddiqlknWHDYLSFAEKQGDFDWVVKLYERclipcadypeFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARykeqigdtsaaraafpesyidsdsRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLtytttgsadnARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNalysrpdvlkvfsledVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTvrtayecpgretKSLRAFIRgkresnvaslpqpfesehlmpsasqdkkfsppeksdsesgddatslpsnqksplpenhdirsdgaEVDILLsgeadsssqdrmqqvppeaaeqhsqdacdpevlsLDLAhqvtnenetvqaseafseeddVQREYEheskkdlkplsleglsldpggndspgslcatsheceapqktnfshesmlkseapretslsdgsvlgasqnnngshfapssmgtqasssapiqtrtvspsssashqnfipeahshpqtpansgrnwheqqnpdrvhrdlrfgyrghshkrqhqqrrfssqryprnesgdqmpmnsrfpsqplpsqnpqaqqgsqaQSQFLHSLTAqawpmqnmqqqtfasasqsevpaqpvfypqaqmsqypsqsseqqGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVqqqdqhppqqwQLEQRQSEQQIGMSQIEKWnnsskqvcd
mevqisnleslsaepnspvGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSmstfedpndVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAyykddetssvikdlldpsvdlvRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAfpesyidsdsrfIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRafirgkresnvaslpqpfeSEHLMPSASQDKKFSPPEKSDsesgddatslpsnqksplpenhdirSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENEtvqaseafseedDVQREYEheskkdlkplsLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRghshkrqhqqrrfssqryprnESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMsqiekwnnsskqvcd
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGhshkrqhqqrrfssqrYPRNESGDQMPMNSRFPSQPLpsqnpqaqqgsqaqsqFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPsqsseqqgllqsnlAYNqmwqyyyyqqqqqqqlflqqqhlqlqqqhlqplqqqqfvqqqqyqqqhslylqqqpqhqqleqyqmqqqvqqqdqhppqqwqleqrqseqqIGMSQIEKWNNSSKQVCD
************************GLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRET**LRAF******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SNLAYNQMWQYYYY*****************************************************************************************************
**********************KQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPH********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEE**********FQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESE**************************************ENHDIRSDGAEVDILLSGE*************************DPEVLSLDLAHQVTNENETVQAS*******************DLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFS*****************GSVLGASQNNNGSHFAP***************************NFIPEAHS******************DRVHRDLRFGYR************************DQMPMNSRF*********************FLHSLTAQAWPMQNMQ************PAQPVFYPQAQ*************LLQSNLAYNQMWQYYYYQQQQQQQLFLQQ************************************************************************GMSQIEKW*********
************AEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGE***********SVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGK********************************************************DIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHES***L****************************************************************************************************************************************************************************************************AQAWPMQNMQQQTFASAS*SEVPAQPVFYPQA**S*********QGLLQSNLAYNQMWQYYYYQQQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQI************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVQISNLESLSAEPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEHLMPSASQDKKFSPPEKSDSESGDDATSLPSNQKSPLPENHDIRSDGAEVDILLSGEADSSSQDRMQQVPPEAAEQHSQDACDPEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDSPGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQASSSAPIQTRTVSPSSSASHQNFIPEAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHSLTAQAWPMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYxxxxxxxxxxxxxxxxxxxxxHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQVQQQDQHPPQQWQLEQRQSEQQIGMSQIEKWNNSSKQVCD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1070 2.2.26 [Sep-21-2011]
Q4KLU2641 Pre-mRNA-processing facto N/A no 0.450 0.751 0.296 2e-54
O74970612 Pre-mRNA-processing facto yes no 0.406 0.710 0.295 4e-50
Q86UA1669 Pre-mRNA-processing facto yes no 0.450 0.720 0.287 9e-50
Q8K2Z2665 Pre-mRNA-processing facto yes no 0.471 0.759 0.279 2e-45
Q1JPZ7752 Pre-mRNA-processing facto no no 0.404 0.575 0.271 2e-45
Q7KRW81066 Pre-mRNA-processing facto yes no 0.147 0.148 0.354 7e-25
P39682629 Pre-mRNA-processing facto yes no 0.257 0.438 0.234 3e-21
>sp|Q4KLU2|PRP39_XENLA Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1 Back     alignment and function desciption
 Score =  214 bits (546), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/532 (29%), Positives = 262/532 (49%), Gaps = 50/532 (9%)

Query: 36  DFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEV 95
           DF+ WT LL  +E    + +      +D+FLA +P CYGYW+KYAD + +  +I +  EV
Sbjct: 69  DFNTWTYLLQYVEQE--NHLFAARKAFDAFLAHYPYCYGYWKKYADLEKKNNNILEADEV 126

Query: 96  FERAVQSATYSVDVWFHYCSLSMSTFEDPND------VRRLFKRALSFVGKDYLCHTMWD 149
           + R +Q+ T SVD+W HY +    T  DP D      +R  F+ A+   G D+    +W+
Sbjct: 127 YRRGIQAITLSVDLWMHYLNFLKETL-DPADPETSLTLRGTFEHAVVSAGLDFRSDKLWE 185

Query: 150 KYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKK-LAGAWKEELECESDSAMEFQ 208
            YI +E  Q   S +  I+ + L  P++    ++  FK+ + G    E    S+  +E +
Sbjct: 186 MYINWETEQGNLSGVTSIYSRLLGIPTQFYSLHFQRFKEHIQGHLPREF-LTSEKFIELR 244

Query: 209 SEL---VLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIGEQIYKEASQLDE 265
            EL    L G       +D+  S ++++ DP+    R+  ++  R    ++++E   L+E
Sbjct: 245 KELASMTLHGGT-----NDDIPSGLEEIKDPAK---RTTEVENMRHRIIEVHQEIFNLNE 296

Query: 266 ----KINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIPCAD 321
               KI  FE  I+RPYFHVKPL+  QL NW +YL F  + G  + +V L+ERC+I CA 
Sbjct: 297 HEVSKIWNFEEEIKRPYFHVKPLEKAQLNNWKEYLEFELENGSNERIVILFERCVIACAC 356

Query: 322 YPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAF 381
           Y EFW++Y  +ME+    E   +  +RA  + L + P++HL  A ++EQ G+   AR   
Sbjct: 357 YEEFWIKYAKYMENHSV-EGVRHVYNRACHVHLAKKPMVHLLWAAFEEQQGNLEEARRIL 415

Query: 382 PESYIDSDSRFIEKVTF-KANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLY-VQF 439
               I++    +  V   + N+ERR GN   A    +  LE A  + K  +    Y ++ 
Sbjct: 416 KN--IETAIEGLAMVRLRRVNLERRHGNVKEA----EHLLEEAMNKTKTSSESSFYAIKL 469

Query: 440 SRLTYTTTGSADNARDILIDGI-KHVPNCKL---LLEELIKFTMVHGGRSHISIVDAVIS 495
           +R  +    +   AR +L + I K   N KL   LLE      +     + ++  D  I 
Sbjct: 470 ARHLFKVQANVVKARKVLSNAIQKDKENTKLYLNLLEMEYNCDIKQNEENILAAFDKAIK 529

Query: 496 NALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGT-IHDIRNAWNQHIKLFPH 546
           + +          S+      S   ++FL+  G+ ++ + + +N+H KL  H
Sbjct: 530 SPM----------SIAMRVKFSQRKVEFLEDFGSDVNKLLDTYNEHQKLLKH 571
Involved in pre-mRNA splicing.
Xenopus laevis (taxid: 8355)
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp39 PE=3 SV=1 Back     alignment and function description
>sp|Q86UA1|PRP39_HUMAN Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3 Back     alignment and function description
>sp|Q8K2Z2|PRP39_MOUSE Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3 Back     alignment and function description
>sp|Q1JPZ7|PRP39_DANRE Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2 Back     alignment and function description
>sp|Q7KRW8|PRP39_DROME Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 PE=1 SV=1 Back     alignment and function description
>sp|P39682|PRP39_YEAST Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1070
297740633 1195 unnamed protein product [Vitis vinifera] 0.852 0.763 0.519 0.0
359483599 1179 PREDICTED: uncharacterized protein LOC10 0.819 0.743 0.52 0.0
449459394901 PREDICTED: pre-mRNA-processing factor 39 0.812 0.964 0.443 0.0
357519211 1215 Pre-mRNA-processing factor [Medicago tru 0.857 0.755 0.422 0.0
306949461036 pre-mRNA-processing factor 39 [Arabidops 0.771 0.797 0.414 1e-180
101777211022 unnamed protein product [Arabidopsis tha 0.774 0.811 0.412 1e-180
2977946211035 binding protein [Arabidopsis lyrata subs 0.771 0.798 0.406 1e-178
222640468 1199 hypothetical protein OsJ_27131 [Oryza sa 0.472 0.422 0.494 1e-154
218201077 1192 hypothetical protein OsI_29060 [Oryza sa 0.472 0.424 0.490 1e-153
255589950663 conserved hypothetical protein [Ricinus 0.548 0.885 0.459 1e-137
>gi|297740633|emb|CBI30815.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1010 (51%), Positives = 653/1010 (64%), Gaps = 98/1010 (9%)

Query: 14  EPNSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCY 73
           E +  V F    L EF+A+G L FD WTSL+S IE + PDDI+ I LVYDSFL+EFPLCY
Sbjct: 2   EDDCSVDFDVLKLPEFVAKGLLGFDAWTSLISNIEKTYPDDIKKICLVYDSFLSEFPLCY 61

Query: 74  GYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKR 133
           GYWRKYADHK+RLC++DKV+EV+ERAVQSATYSV +W  YCS SMS FEDP DVRRLFKR
Sbjct: 62  GYWRKYADHKSRLCTVDKVIEVYERAVQSATYSVGLWVDYCSFSMSVFEDPFDVRRLFKR 121

Query: 134 ALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGAW 193
            LSFVGKDYLCHT+WDKYIEFE+SQQ+WS LA +++ TLRFP+KKLHHYYDSFKKL    
Sbjct: 122 GLSFVGKDYLCHTLWDKYIEFELSQQQWSFLAHVYILTLRFPTKKLHHYYDSFKKLVAIC 181

Query: 194 KEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFIG 253
           +EE+E   +S ME QSELV++ E   YYKDDE S +  DLLDPSV   R KA+QKY  IG
Sbjct: 182 QEEIESHGNSGMEVQSELVVDSENTTYYKDDEVSHITTDLLDPSVGSDRYKALQKYLSIG 241

Query: 254 EQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGDFDWVVKLYE 313
           EQ+Y++A Q+D KI+ FE  IRRPYFHVKPLD  QL+NWH YL F E QGDFDW VKLYE
Sbjct: 242 EQLYQKACQVDAKIHGFETHIRRPYFHVKPLDVSQLENWHQYLDFVEVQGDFDWAVKLYE 301

Query: 314 RCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVIHLFNARYKEQIGD 373
           RCLIPCA+YPEFWMRYV+FME KGGREIA++ALDR+T+IFLK +P IH+FNA +KEQ GD
Sbjct: 302 RCLIPCANYPEFWMRYVEFMEIKGGREIANFALDRSTKIFLKSIPAIHVFNAWFKEQTGD 361

Query: 374 TSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLP 433
              A AAF +   +SDS FIE V  +ANM++RLGNF AA + +KEAL  A E++KFH LP
Sbjct: 362 VFGAHAAFVQYETESDSSFIENVIKEANMKKRLGNFAAASNIFKEALAIAVEKQKFHILP 421

Query: 434 LLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAV 493
            LY+ FSRL Y  TGS D ARD+LIDGI+ VP  K+LLEELIKF M+HGG  HI++VDAV
Sbjct: 422 NLYIHFSRLEYMITGSVDAARDVLIDGIRCVPESKMLLEELIKFAMMHGGPRHINVVDAV 481

Query: 494 ISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTA-- 551
           ++NA+    DV +  S +D E IS LYL+F+DLCGTI+D++ AWN+HIKLFPH +RT   
Sbjct: 482 VANAISPGTDVSQGLSAKDGEYISRLYLEFVDLCGTIYDVKKAWNRHIKLFPHCLRTMSI 541

Query: 552 YECPGRETKSLRAFIRGKRESNVASLP-QPFESEHLMPSASQDKKFSPPEKSDSESGDDA 610
           Y+ P   +K LR  + G R   +A++P  PF                       +SG D 
Sbjct: 542 YKYPATSSKPLRIAMEG-RPDIIAAMPCHPF----------------------GDSGSDH 578

Query: 611 TSLPSNQKSPL--PENHDIRSDGAEVDILLSGEA-DSSSQDRMQQVPPEAAEQHSQDACD 667
            +L   ++  L  PENHDI S+   V++ L  EA + S+Q+ +Q V P+   QH ++A +
Sbjct: 579 LALIPIEEQGLSCPENHDIHSEQV-VNVQLEPEAANKSAQEGLQLVIPKVPGQHREEASE 637

Query: 668 PEVLSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKKDLKPLSLEGLSLDPGGNDS 727
           P V   D   +  NE E+VQA  A S  +D+Q+E EHE  +D K LSLE LSL+P G +S
Sbjct: 638 PNVS--DSVVKEYNEIESVQALLALSRANDLQQEVEHEPLQDPKSLSLECLSLNPQGKES 695

Query: 728 PGSLCATSHECEAPQKTNFSHESMLKSEAPRETSLSDGSVLGASQNNNGSHFAPSSMGTQ 787
           P S+ A+SHE EAP+            EA R   +   SV    +N   S    S +GT 
Sbjct: 696 PESIPASSHEVEAPE------------EACRSNGIITESVYNTDENPPSS----SPVGTS 739

Query: 788 ASSSAPIQTRTVSPSSSAS----------------------------------------- 806
           A   A I + +V P SSAS                                         
Sbjct: 740 ADDPAEIHSESVGPLSSASPQLPTPTEELSQSLVPKSGGGKWNQTDGTDKYAQIQMSPER 799

Query: 807 HQNFIP-EAHSHPQTPANSGRNWHEQQNPDRVHRDLRFGYRGHSHKRQHQQRRFS-SQRY 864
           H+N  P EA  HPQ   N   NW +  N D+VHRD    + GHS  ++   R     Q+Y
Sbjct: 800 HKNPPPSEAVPHPQLSVNGAGNWRQMNNADKVHRDSSPRFHGHSRNKRRASRHVPLEQQY 859

Query: 865 PRNESGDQMPMNSRFPSQPLP----SQNPQAQQGSQAQSQFLHSLTA-QAWPMQNMQQQT 919
           PR++ G QM ++   P QP           +Q     Q+    +LTA  AWPMQ +QQQ 
Sbjct: 860 PRDQIGTQMLVSQGNPGQPFSWQNQQNQQGSQAQHPIQTAGQGNLTATHAWPMQIVQQQN 919

Query: 920 FASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYY 969
           FASAS  +VPAQPV   QAQ+SQYP QS+EQ G +Q++ AYNQMW YYYY
Sbjct: 920 FASASSCQVPAQPV--TQAQVSQYPMQSNEQYGHMQNSQAYNQMWHYYYY 967

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483599|ref|XP_002271803.2| PREDICTED: uncharacterized protein LOC100243465 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459394|ref|XP_004147431.1| PREDICTED: pre-mRNA-processing factor 39-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357519211|ref|XP_003629894.1| Pre-mRNA-processing factor [Medicago truncatula] gi|355523916|gb|AET04370.1| Pre-mRNA-processing factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|30694946|ref|NP_199452.2| pre-mRNA-processing factor 39 [Arabidopsis thaliana] gi|332007996|gb|AED95379.1| pre-mRNA-processing factor 39 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10177721|dbj|BAB11095.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297794621|ref|XP_002865195.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297311030|gb|EFH41454.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|222640468|gb|EEE68600.1| hypothetical protein OsJ_27131 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218201077|gb|EEC83504.1| hypothetical protein OsI_29060 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|255589950|ref|XP_002535134.1| conserved hypothetical protein [Ricinus communis] gi|223523950|gb|EEF27249.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1070
TAIR|locus:21704531036 PRP39-2 [Arabidopsis thaliana 0.658 0.680 0.463 5.6e-167
ASPGD|ASPL0000046692588 AN1635 [Emericella nidulans (t 0.385 0.702 0.316 4.8e-53
POMBASE|SPBC4B4.09612 usp105 "U1 snRNP-associated pr 0.448 0.784 0.286 2.2e-52
RGD|1308702664 Prpf39 "PRP39 pre-mRNA process 0.493 0.795 0.277 1e-50
UNIPROTKB|E1C8G8628 PRPF39 "Uncharacterized protei 0.474 0.808 0.281 1.2e-50
UNIPROTKB|F1SI15667 PRPF39 "Uncharacterized protei 0.471 0.757 0.277 8.8e-50
UNIPROTKB|F1PV57667 PRPF39 "Uncharacterized protei 0.475 0.763 0.280 1.5e-49
UNIPROTKB|Q86UA1669 PRPF39 "Pre-mRNA-processing fa 0.464 0.742 0.283 1.9e-49
UNIPROTKB|G4MRU5586 MGG_04558 "Pre-mRNA-processing 0.374 0.684 0.314 1.9e-49
MGI|MGI:104602665 Prpf39 "PRP39 pre-mRNA process 0.491 0.790 0.278 7.4e-48
TAIR|locus:2170453 PRP39-2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1609 (571.5 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
 Identities = 335/723 (46%), Positives = 456/723 (63%)

Query:     5 ISNLESLSAEP--NSPVGF-GKQGLEEFIAEGSLDFDEWTSLLSEIEN-SCPDDIEMIGL 60
             +S+ E L   P  +S   F     L+E  + G+LDFDEWT L+SEIE  S PDDIE + L
Sbjct:    10 VSDKEPLQRSPELDSSTDFLDNDRLKETFSSGALDFDEWTLLISEIETTSFPDDIEKLCL 69

Query:    61 VYDSFLAEFPLCYGYWRKYADHKARLCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMST 120
             VYD+FL EFPLC+GYWRKYA HK +LC+++  VEVFERAVQ+ATYSV VW  YC+ +++ 
Sbjct:    70 VYDAFLLEFPLCHGYWRKYAYHKIKLCTLEDAVEVFERAVQAATYSVAVWLDYCAFAVAA 129

Query:   121 FEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQIFVQTLRFPSKKLH 180
             +EDP+DV RLF+R LSF+GKDY C T+WDKYIE+ + QQ+WSSLA ++++TL++PSKKL 
Sbjct:   130 YEDPHDVSRLFERGLSFIGKDYSCCTLWDKYIEYLLGQQQWSSLANVYLRTLKYPSKKLD 189

Query:   181 HYYDSFKKLAGAWKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDL 240
              YY +F+K+A + KE+++C  D   +  S+ + E  V   + D+E S V+++L+ PS   
Sbjct:   190 LYYKNFRKIAASLKEKIKCRIDVNGDLSSDPMEEDLVHTRHTDEEISIVVRELMGPSSSS 249

Query:   241 VRSKAIQKYRFIGEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAE 300
               SKA+  Y  IGEQ Y+++ QL EKI+CFE  IRRPYFHVKPLD  QL NWH YLSF E
Sbjct:   250 AVSKALHTYLSIGEQFYQDSRQLMEKISCFETQIRRPYFHVKPLDTNQLDNWHAYLSFGE 309

Query:   301 KQGDFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGGREIASYALDRATQIFLKRLPVI 360
               GDFDW + LYERCLIPCA+Y EFW RYVDF+ESKGGRE+A++AL RA+Q F+K   VI
Sbjct:   310 TYGDFDWAINLYERCLIPCANYTEFWFRYVDFVESKGGRELANFALARASQTFVKSASVI 369

Query:   361 HLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEAL 420
             HLFNAR+KE +GD SAA  A      +    F+E VT KANME+RLGNF AA  TY+EAL
Sbjct:   370 HLFNARFKEHVGDASAASVALSRCGEELGFGFVENVTKKANMEKRLGNFEAAVTTYREAL 429

Query:   421 -ETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTM 479
              +T   +    T   LYVQFSRL Y  T SAD+A  IL++G ++VP+CKLLLEEL++  M
Sbjct:   430 NKTLIGKENLETTARLYVQFSRLKYVITNSADDAAQILLEGNENVPHCKLLLEELMRLLM 489

Query:   480 VHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQ 539
             +HGG   + ++D +I   L  + D     S ED E+IS+LY++F+DL GTIHD+R A  +
Sbjct:   490 MHGGSRQVDLLDPIIDKELSHQADSSDGLSAEDKEEISNLYMEFIDLSGTIHDVRKALGR 549

Query:   540 HIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLPQPFESEH----LMPSASQDKK 595
             HIKLFPH+ R             R  I+ +RE     L Q   +      ++ S  ++KK
Sbjct:   550 HIKLFPHSARAKLRGSRPSGNLFRELIQ-RREKTRERLNQDLLTNKGISSIVDSPPKEKK 608

Query:   596 FSPPEKSDSESGD----DATSLPSNQKSPLPENHDIR-SDGA-EVDILLSGEADSSSQDR 649
              S  +   ++S D    D  +   NQ   L   H +  +D   E + L   ++D S   +
Sbjct:   609 ESSLDSYGTQSKDAVRADYVNTEPNQGC-LTSGHLVEGNDNVIERETLCESQSDLSMGLK 667

Query:   650 MQQVPPEAAEQHSQDACDPEV-LSLDLAHQVTNENETVQASEAFSEEDDVQREYEHESKK 708
               +    + E        PE       AH  +N  +TV++     +    Q    ++S++
Sbjct:   668 ANEGGKRSHEVSLPIQASPEHGFVTKQAHFSSNSVDTVKSDAIVIQPSGSQSPQSYQSQE 727

Query:   709 DLK 711
              L+
Sbjct:   728 SLR 730
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006396 "RNA processing" evidence=IEA
ASPGD|ASPL0000046692 AN1635 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC4B4.09 usp105 "U1 snRNP-associated protein Usp105" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
RGD|1308702 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8G8 PRPF39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SI15 PRPF39 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PV57 PRPF39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q86UA1 PRPF39 "Pre-mRNA-processing factor 39" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRU5 MGG_04558 "Pre-mRNA-processing factor 39" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
MGI|MGI:104602 Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PRP39-2
PRP39-2; PRP39-2; INVOLVED IN- RNA processing; LOCATED IN- intracellular; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RNA-processing protein, HAT helix (InterPro-IPR003107); BEST Arabidopsis thaliana protein match is- PRP39; binding (TAIR-AT1G04080.1); Has 39577 Blast hits to 18233 proteins in 717 species- Archae - 6; Bacteria - 1449; Metazoa - 13066; Fungi - 4212; Plants - 3374; Viruses - 183; Other Eukaryotes - 17287 (source- NCBI BLink). (1036 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1070
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 1e-15
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-13
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-13
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-12
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-11
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-11
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-10
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 2e-09
pfam13779 820 pfam13779, DUF4175, Domain of unknown function (DU 9e-09
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 3e-08
pfam13779 820 pfam13779, DUF4175, Domain of unknown function (DU 6e-07
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 8e-07
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 1e-06
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 2e-06
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 3e-06
pfam09606 768 pfam09606, Med15, ARC105 or Med15 subunit of Media 4e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 2e-05
PRK10927319 PRK10927, PRK10927, essential cell division protei 2e-05
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 2e-05
pfam11498476 pfam11498, Activator_LAG-3, Transcriptional activa 5e-05
pfam07223 357 pfam07223, DUF1421, Protein of unknown function (D 5e-05
PRK10920 390 PRK10920, PRK10920, putative uroporphyrinogen III 5e-05
COG3264 835 COG3264, COG3264, Small-conductance mechanosensiti 5e-05
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 5e-05
pfam07223 357 pfam07223, DUF1421, Protein of unknown function (D 1e-04
smart0038633 smart00386, HAT, HAT (Half-A-TPR) repeats 1e-04
PRK09510 387 PRK09510, tolA, cell envelope integrity inner memb 3e-04
PRK00286438 PRK00286, xseA, exodeoxyribonuclease VII large sub 4e-04
COG5107660 COG5107, RNA14, Pre-mRNA 3'-end processing (cleava 4e-04
COG3064 387 COG3064, TolA, Membrane protein involved in colici 4e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 5e-04
pfam13388 422 pfam13388, DUF4106, Protein of unknown function (D 5e-04
PRK10927 319 PRK10927, PRK10927, essential cell division protei 6e-04
COG2959 391 COG2959, HemX, Uncharacterized enzyme of heme bios 6e-04
pfam07223357 pfam07223, DUF1421, Protein of unknown function (D 7e-04
PRK10263 1355 PRK10263, PRK10263, DNA translocase FtsK; Provisio 8e-04
pfam07223 357 pfam07223, DUF1421, Protein of unknown function (D 0.001
pfam13779 820 pfam13779, DUF4175, Domain of unknown function (DU 0.002
PRK01294336 PRK01294, PRK01294, lipase chaperone; Provisional 0.002
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.002
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.002
pfam04702147 pfam04702, Vicilin_N, Vicilin N terminal region 0.003
cd00261110 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors 0.003
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information 
 Score = 81.4 bits (201), Expect = 1e-15
 Identities = 48/202 (23%), Positives = 61/202 (30%), Gaps = 13/202 (6%)

Query: 853  QHQQRRFSSQRYPRNESGDQMPMNSRFPSQPLPSQNPQAQQGSQAQSQFLHS--LTAQAW 910
               Q  + +   P      Q P  S + + P P   P     SQ Q Q      L+ +  
Sbjct: 101  SPCQSGYEASTDPEYIPDLQ-PDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEV 159

Query: 911  PMQNMQQQTFASASQSEVPAQPVFYPQAQMSQYPSQSSEQQGLLQSNLAYNQMWQYYYYQ 970
              Q  Q+Q        ++P  P       M   P + +                    + 
Sbjct: 160  EAQLQQRQ-----QAPQLPQPPQQVLPQGM---PPRQAAFPQQGPPEQPPGYPQPPQGHP 211

Query: 971  QQQQQQLFLQQQHLQLQQQHLQPLQQQQFVQQQQYQQQHSLYLQQQPQHQQLEQYQMQQQ 1030
            +Q Q Q FL        Q  L P   QQ    QQ  Q   L  Q  P   Q  Q Q QQ 
Sbjct: 212  EQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ-PQFPGLSQQMPPPPPQPPQ-QQQQP 269

Query: 1031 VQQQDQHPPQQWQLEQRQSEQQ 1052
             Q Q Q PPQ          Q 
Sbjct: 270  PQPQAQPPPQNQPTPHPGLPQG 291

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III C-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|227438 COG5107, RNA14, Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106) Back     alignment and domain information
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional Back     alignment and domain information
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) Back     alignment and domain information
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) Back     alignment and domain information
>gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region Back     alignment and domain information
>gnl|CDD|238163 cd00261, AAI_SS, AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1070
KOG2047835 consensus mRNA splicing factor [RNA processing and 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
KOG1914656 consensus mRNA cleavage and polyadenylation factor 100.0
KOG1258577 consensus mRNA processing protein [RNA processing 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
KOG1915677 consensus Cell cycle control protein (crooked neck 100.0
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 100.0
KOG2047835 consensus mRNA splicing factor [RNA processing and 100.0
KOG0495913 consensus HAT repeat protein [RNA processing and m 100.0
KOG4626966 consensus O-linked N-acetylglucosamine transferase 99.97
KOG4626966 consensus O-linked N-acetylglucosamine transferase 99.96
KOG0128881 consensus RNA-binding protein SART3 (RRM superfami 99.95
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.95
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.94
PRK114471157 cellulose synthase subunit BcsC; Provisional 99.93
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.93
PRK114471157 cellulose synthase subunit BcsC; Provisional 99.92
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.9
KOG1914656 consensus mRNA cleavage and polyadenylation factor 99.89
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.88
PRK15174656 Vi polysaccharide export protein VexE; Provisional 99.88
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.88
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.87
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.86
PRK10049765 pgaA outer membrane protein PgaA; Provisional 99.85
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.83
PRK09782987 bacteriophage N4 receptor, outer membrane subunit; 99.82
KOG0547606 consensus Translocase of outer mitochondrial membr 99.8
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 99.77
KOG2076895 consensus RNA polymerase III transcription factor 99.75
PRK11788389 tetratricopeptide repeat protein; Provisional 99.74
PRK11788389 tetratricopeptide repeat protein; Provisional 99.74
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 99.73
KOG0547606 consensus Translocase of outer mitochondrial membr 99.72
PLN032181060 maturation of RBCL 1; Provisional 99.71
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.71
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.7
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.7
PRK14574822 hmsH outer membrane protein; Provisional 99.69
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.69
KOG1258577 consensus mRNA processing protein [RNA processing 99.69
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.68
PLN032181060 maturation of RBCL 1; Provisional 99.68
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.67
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.67
KOG2076895 consensus RNA polymerase III transcription factor 99.66
PLN03077857 Protein ECB2; Provisional 99.65
PRK14574822 hmsH outer membrane protein; Provisional 99.63
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 99.62
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 99.62
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.62
KOG1126638 consensus DNA-binding cell division cycle control 99.59
PLN03077857 Protein ECB2; Provisional 99.56
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.55
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 99.54
KOG1126638 consensus DNA-binding cell division cycle control 99.54
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.53
PRK12370553 invasion protein regulator; Provisional 99.53
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.53
KOG2003840 consensus TPR repeat-containing protein [General f 99.52
PRK12370553 invasion protein regulator; Provisional 99.49
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.48
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.48
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.48
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.46
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.46
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.44
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.44
KOG0128881 consensus RNA-binding protein SART3 (RRM superfami 99.41
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.4
PRK11189296 lipoprotein NlpI; Provisional 99.4
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.38
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.38
PRK11189296 lipoprotein NlpI; Provisional 99.37
KOG2003840 consensus TPR repeat-containing protein [General f 99.36
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.35
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.34
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 99.32
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.3
KOG11271238 consensus TPR repeat-containing protein [RNA proce 99.3
PLN02789320 farnesyltranstransferase 99.29
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.27
KOG1125579 consensus TPR repeat-containing protein [General f 99.24
KOG11271238 consensus TPR repeat-containing protein [RNA proce 99.22
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.22
KOG1156700 consensus N-terminal acetyltransferase [Chromatin 99.19
KOG1125579 consensus TPR repeat-containing protein [General f 99.18
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.15
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.15
PRK15359144 type III secretion system chaperone protein SscB; 99.14
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.14
PLN02789320 farnesyltranstransferase 99.13
KOG1129478 consensus TPR repeat-containing protein [General f 99.11
KOG1129478 consensus TPR repeat-containing protein [General f 99.11
KOG2376652 consensus Signal recognition particle, subunit Srp 99.1
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.1
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 99.1
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.09
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.08
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.07
KOG1128777 consensus Uncharacterized conserved protein, conta 99.05
PRK15359144 type III secretion system chaperone protein SscB; 99.01
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 98.99
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 98.98
cd05804355 StaR_like StaR_like; a well-conserved protein foun 98.98
PRK10370198 formate-dependent nitrite reductase complex subuni 98.94
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 98.93
PRK10370198 formate-dependent nitrite reductase complex subuni 98.93
PRK14720906 transcript cleavage factor/unknown domain fusion p 98.91
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.9
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.87
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 98.86
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.85
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.81
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.8
KOG1128777 consensus Uncharacterized conserved protein, conta 98.79
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.78
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 98.77
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.75
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.73
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 98.72
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.63
KOG0553304 consensus TPR repeat-containing protein [General f 98.6
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 98.59
COG5191435 Uncharacterized conserved protein, contains HAT (H 98.58
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.58
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.57
KOG2376652 consensus Signal recognition particle, subunit Srp 98.56
COG5191435 Uncharacterized conserved protein, contains HAT (H 98.51
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 98.5
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.49
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.46
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.45
KOG0553304 consensus TPR repeat-containing protein [General f 98.44
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.43
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.42
PRK04841903 transcriptional regulator MalT; Provisional 98.42
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.39
KOG35982220 consensus Thyroid hormone receptor-associated prot 98.37
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 98.37
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 98.36
PRK04841903 transcriptional regulator MalT; Provisional 98.36
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.31
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.26
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.26
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.24
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.23
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.16
KOG36161636 consensus Selective LIM binding factor [Transcript 98.1
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.06
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.04
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.03
PRK02603172 photosystem I assembly protein Ycf3; Provisional 98.03
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.02
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.01
PRK11906458 transcriptional regulator; Provisional 98.01
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.0
PRK10153517 DNA-binding transcriptional activator CadC; Provis 97.98
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.97
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.97
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 97.96
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 97.95
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 97.94
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 97.91
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.9
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.9
PRK10803263 tol-pal system protein YbgF; Provisional 97.9
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 97.88
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.88
KOG3598 2220 consensus Thyroid hormone receptor-associated prot 97.88
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.87
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.85
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.82
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.82
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 97.8
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.8
PRK10803263 tol-pal system protein YbgF; Provisional 97.79
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.78
COG3898531 Uncharacterized membrane-bound protein [Function u 97.77
COG4700251 Uncharacterized protein conserved in bacteria cont 97.77
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 97.77
KOG2053932 consensus Mitochondrial inheritance and actin cyto 97.74
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 97.73
PF12688120 TPR_5: Tetratrico peptide repeat 97.73
COG0457291 NrfG FOG: TPR repeat [General function prediction 97.73
PF12688120 TPR_5: Tetratrico peptide repeat 97.72
PRK11906458 transcriptional regulator; Provisional 97.66
PRK15331165 chaperone protein SicA; Provisional 97.65
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.63
KOG08902382 consensus Protein kinase of the PI-3 kinase family 97.59
PF1337173 TPR_9: Tetratricopeptide repeat 97.59
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.56
COG4700251 Uncharacterized protein conserved in bacteria cont 97.55
PF1337173 TPR_9: Tetratricopeptide repeat 97.52
KOG4340459 consensus Uncharacterized conserved protein [Funct 97.5
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.5
KOG1941518 consensus Acetylcholine receptor-associated protei 97.43
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 97.43
PF1342844 TPR_14: Tetratricopeptide repeat 97.41
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 97.4
PRK15331165 chaperone protein SicA; Provisional 97.38
KOG4340459 consensus Uncharacterized conserved protein [Funct 97.34
PF1342844 TPR_14: Tetratricopeptide repeat 97.33
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.3
KOG1586288 consensus Protein required for fusion of vesicles 97.28
KOG09851666 consensus Vesicle coat protein clathrin, heavy cha 97.26
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 97.26
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.25
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.21
KOG1586288 consensus Protein required for fusion of vesicles 97.16
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 97.15
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.13
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.12
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 97.1
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 97.05
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 97.04
COG1729262 Uncharacterized protein conserved in bacteria [Fun 97.04
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.02
KOG4234271 consensus TPR repeat-containing protein [General f 97.0
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.99
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.98
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 96.98
KOG09851666 consensus Vesicle coat protein clathrin, heavy cha 96.97
KOG4648536 consensus Uncharacterized conserved protein, conta 96.97
KOG4555175 consensus TPR repeat-containing protein [Function 96.95
KOG4234271 consensus TPR repeat-containing protein [General f 96.94
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 96.92
KOG4648536 consensus Uncharacterized conserved protein, conta 96.91
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.9
PF06552186 TOM20_plant: Plant specific mitochondrial import r 96.82
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 96.8
KOG4555175 consensus TPR repeat-containing protein [Function 96.79
KOG1585308 consensus Protein required for fusion of vesicles 96.73
PF13512142 TPR_18: Tetratricopeptide repeat 96.69
KOG1585308 consensus Protein required for fusion of vesicles 96.67
KOG1130639 consensus Predicted G-alpha GTPase interaction pro 96.63
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 96.61
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 96.58
KOG2796366 consensus Uncharacterized conserved protein [Funct 96.54
KOG1941518 consensus Acetylcholine receptor-associated protei 96.49
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 96.47
KOG2796366 consensus Uncharacterized conserved protein [Funct 96.47
COG3898531 Uncharacterized membrane-bound protein [Function u 96.43
PF1343134 TPR_17: Tetratricopeptide repeat 96.43
PF0218432 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 96.39
KOG08902382 consensus Protein kinase of the PI-3 kinase family 96.28
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.26
KOG0530318 consensus Protein farnesyltransferase, alpha subun 96.05
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 95.97
PF13281374 DUF4071: Domain of unknown function (DUF4071) 95.95
PF1343134 TPR_17: Tetratricopeptide repeat 95.91
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 95.89
COG4105254 ComL DNA uptake lipoprotein [General function pred 95.86
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.83
PF06552186 TOM20_plant: Plant specific mitochondrial import r 95.74
PF13512142 TPR_18: Tetratricopeptide repeat 95.72
KOG2300629 consensus Uncharacterized conserved protein [Funct 95.71
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 95.45
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 95.45
COG3118304 Thioredoxin domain-containing protein [Posttransla 95.4
KOG20411189 consensus WD40 repeat protein [General function pr 95.26
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 95.26
KOG2610491 consensus Uncharacterized conserved protein [Funct 95.2
KOG2471696 consensus TPR repeat-containing protein [General f 94.98
KOG2053932 consensus Mitochondrial inheritance and actin cyto 94.92
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 94.85
COG2976207 Uncharacterized protein conserved in bacteria [Fun 94.84
COG4105254 ComL DNA uptake lipoprotein [General function pred 94.72
KOG08893550 consensus Histone acetyltransferase SAGA, TRRAP/TR 94.5
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 94.45
KOG2610491 consensus Uncharacterized conserved protein [Funct 94.16
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 93.95
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.88
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 93.87
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 93.81
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 93.81
COG2976207 Uncharacterized protein conserved in bacteria [Fun 93.75
KOG4507886 consensus Uncharacterized conserved protein, conta 93.61
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 93.45
KOG15381081 consensus Uncharacterized conserved protein WDR10, 93.44
KOG0530318 consensus Protein farnesyltransferase, alpha subun 93.41
COG3118304 Thioredoxin domain-containing protein [Posttransla 93.35
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 93.25
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 93.02
KOG2300629 consensus Uncharacterized conserved protein [Funct 92.87
KOG1308377 consensus Hsp70-interacting protein Hip/Transient 92.81
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 92.63
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 92.53
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 92.52
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 92.19
KOG0376476 consensus Serine-threonine phosphatase 2A, catalyt 92.12
COG1747711 Uncharacterized N-terminal domain of the transcrip 92.11
KOG2581493 consensus 26S proteasome regulatory complex, subun 92.04
KOG1972913 consensus Uncharacterized conserved protein [Funct 91.92
PRK12798421 chemotaxis protein; Reviewed 91.9
KOG2422665 consensus Uncharacterized conserved protein [Funct 91.63
KOG08893550 consensus Histone acetyltransferase SAGA, TRRAP/TR 91.55
KOG3824472 consensus Huntingtin interacting protein HYPE [Gen 91.1
COG1747711 Uncharacterized N-terminal domain of the transcrip 91.07
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 91.02
KOG20411189 consensus WD40 repeat protein [General function pr 90.88
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 90.62
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 90.58
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 90.54
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 90.53
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 90.46
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 90.28
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 89.95
COG5187412 RPN7 26S proteasome regulatory complex component, 89.9
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 89.82
COG3629280 DnrI DNA-binding transcriptional activator of the 89.6
PF09986214 DUF2225: Uncharacterized protein conserved in bact 89.12
KOG15381081 consensus Uncharacterized conserved protein WDR10, 89.11
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 89.03
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 88.88
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 88.63
PF09986214 DUF2225: Uncharacterized protein conserved in bact 87.95
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 87.93
KOG1550552 consensus Extracellular protein SEL-1 and related 87.76
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 87.71
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 87.64
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 87.57
KOG1550552 consensus Extracellular protein SEL-1 and related 87.36
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 86.55
KOG2471696 consensus TPR repeat-containing protein [General f 86.04
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 85.86
KOG4507886 consensus Uncharacterized conserved protein, conta 85.35
KOG0529421 consensus Protein geranylgeranyltransferase type I 85.32
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 84.69
PF1286294 Apc5: Anaphase-promoting complex subunit 5 84.47
COG3629280 DnrI DNA-binding transcriptional activator of the 84.29
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 84.21
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 84.02
COG3947361 Response regulator containing CheY-like receiver a 83.86
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 83.59
PF09670379 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 83.56
PF1286294 Apc5: Anaphase-promoting complex subunit 5 83.49
COG4976287 Predicted methyltransferase (contains TPR repeat) 82.58
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 81.74
PRK10941269 hypothetical protein; Provisional 81.3
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 80.94
PF03154 982 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 80.85
COG4976287 Predicted methyltransferase (contains TPR repeat) 80.48
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 80.46
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 80.18
PRK10941269 hypothetical protein; Provisional 80.11
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-68  Score=595.11  Aligned_cols=575  Identities=16%  Similarity=0.237  Sum_probs=471.0

Q ss_pred             CCCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--------C
Q 001486           16 NSPVGFGKQGLEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL--------C   87 (1070)
Q Consensus        16 ~~~~~~~~~~le~~l~~nP~s~~~W~~li~~~~~~~~~~~~~a~~vyeraL~~~P~s~~lW~~ya~~e~~~--------~   87 (1070)
                      +..+..++..||+.|.+||+|+++|.+||++...   ...++.+.+|||||+.+|+|+++|+.|++.....        .
T Consensus         6 dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~---sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~   82 (835)
T KOG2047|consen    6 DLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAG---SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDP   82 (835)
T ss_pred             cccccccccchHHHHHcCchhHHHHHHHHHHHcc---CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCCh
Confidence            3334445679999999999999999999998765   5788899999999999999999999999876544        2


Q ss_pred             CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHcccHHHHHHH
Q 001486           88 SIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSFVGKDYLCHTMWDKYIEFEISQQRWSSLAQI  167 (1070)
Q Consensus        88 ~~e~A~~lferAL~~~P~s~~lW~~y~~~~~~~~~~~~~ar~vferAL~~~p~~~~s~~lW~~yi~fe~~~~~~~~a~~i  167 (1070)
                      -|+.+..+|+|||.++++++.||+.|+.|++++ ++++..|++|++||+++|... +.+||..|++|..+++-.+.+.++
T Consensus        83 ~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q-~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~lPets~rv  160 (835)
T KOG2047|consen   83 AYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ-GLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHGLPETSIRV  160 (835)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCCChHHHHHH
Confidence            378999999999999999999999999999999 999999999999999999987 589999999999999999999999


Q ss_pred             HHHHHccCCcCHHHHHHHHHHHHHHHHHHhh------------hcchhh-HHH------------------HHHHhhcCC
Q 001486          168 FVQTLRFPSKKLHHYYDSFKKLAGAWKEELE------------CESDSA-MEF------------------QSELVLEGE  216 (1070)
Q Consensus       168 y~raL~~p~~~~~~~~~~~~~~~~~~~eal~------------~~~~~~-~~~------------------~~~~~~~~~  216 (1070)
                      |+|+|++.+...+++. .|....+.++++..            ++++++ ...                  ..++++++.
T Consensus       161 yrRYLk~~P~~~eeyi-e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g  239 (835)
T KOG2047|consen  161 YRRYLKVAPEAREEYI-EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG  239 (835)
T ss_pred             HHHHHhcCHHHHHHHH-HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence            9999997666544443 34444444444311            111111 111                  122455555


Q ss_pred             ccccccc-hhhhHHHhhhcCcchhHHHHHHHHHHHH-------HHHHHHHHH-------------------------HHH
Q 001486          217 VPAYYKD-DETSSVIKDLLDPSVDLVRSKAIQKYRF-------IGEQIYKEA-------------------------SQL  263 (1070)
Q Consensus       217 l~~~~~~-~e~~~~i~~~~~~~~~~~~a~~~~~~~~-------~~~~~y~~a-------------------------~~~  263 (1070)
                      +..+.+. -.+|+.+.++.-+++.+++++++++..+       .+.++|+.-                         .++
T Consensus       240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl  319 (835)
T KOG2047|consen  240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL  319 (835)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence            5433222 2456667777778999999998877432       133444310                         011


Q ss_pred             HHHHHHHHHhhcc-cCCCCC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHH
Q 001486          264 DEKINCFENLIRR-PYFHVK---PLDDIQLKNWHDYLSFAEKQGDFDWVVKLYERCLIP------CADYPEFWMRYVDFM  333 (1070)
Q Consensus       264 ~~~~~~fE~ai~~-~~~~~~---~~~p~~~~~W~~yi~~~~~~g~~~~a~~~yerAL~~------~p~~~~lW~~ya~~l  333 (1070)
                      .-....||..+.+ +.+.+.   ..+|++++.|++.+.++  .|+..+.+.+|.+|+..      .+....+|..||+||
T Consensus       320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklY  397 (835)
T KOG2047|consen  320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLY  397 (835)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHH
Confidence            2234567777643 333333   27999999999999998  68899999999999963      355679999999999


Q ss_pred             HhhCChhHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHhCCHHHHHHHHHHHhhccC------------------hhh
Q 001486          334 ESKGGREIASYALDRATQIFLK---RLPVIHLFNARYKEQIGDTSAARAAFPESYIDSD------------------SRF  392 (1070)
Q Consensus       334 ~~~g~~e~A~~il~rAl~~~~~---~~p~i~~~~a~~e~~~g~~~eA~~~~~~al~~~~------------------p~~  392 (1070)
                      +..|+++.||.+|++|+.+..+   ++..+|+.||.+|.++.+++.|++++++|+ .+.                  ..+
T Consensus       398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrS  476 (835)
T KOG2047|consen  398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRS  476 (835)
T ss_pred             HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHh
Confidence            9999999999999999997544   446899999999999999999999999996 221                  145


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh--CCCcHHH
Q 001486          393 IEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKH--VPNCKLL  470 (1070)
Q Consensus       393 ~~~w~~~a~le~~~g~~~~A~~vyekal~~~~~~~~~~~~~~l~i~~A~~~~~~~g~~e~Ar~iyekaL~~--~P~~~~l  470 (1070)
                      +++|..|+++++..|.++.++++|++.|++      ...+|.+.++||.+++ .+..+++|+++||||+.+  +|+..++
T Consensus       477 lkiWs~y~DleEs~gtfestk~vYdriidL------riaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~di  549 (835)
T KOG2047|consen  477 LKIWSMYADLEESLGTFESTKAVYDRIIDL------RIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDI  549 (835)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH------hcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHH
Confidence            789999999999999999999999999999      6899999999999998 999999999999999997  5678899


Q ss_pred             HHHHH-HHHHHcCCCcchhHHHHHHHHHhccCCcccccCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q 001486          471 LEELI-KFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVR  549 (1070)
Q Consensus       471 w~~y~-~~e~~~g~~~~~~~ar~l~ekAl~~~~~~s~~l~~~~~~~l~~~~~~~e~~~G~~~~a~~~~~ra~~~~p~~~~  549 (1070)
                      |..|+ +|..++|+.+ .+++|.+||+||.       .||+++.+.||.+|.+||+++|...+++++|+||...++...+
T Consensus       550 W~tYLtkfi~rygg~k-lEraRdLFEqaL~-------~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~  621 (835)
T KOG2047|consen  550 WNTYLTKFIKRYGGTK-LERARDLFEQALD-------GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR  621 (835)
T ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence            99999 6777777764 7899999999996       6889999999999999999999999999999999999999999


Q ss_pred             ccccCc-ccchhhhhhh--hhccchhhhhcCC-cccccccccccccccccCCC------CCcCCCccCCCCCCCCC
Q 001486          550 TAYECP-GRETKSLRAF--IRGKRESNVASLP-QPFESEHLMPSASQDKKFSP------PEKSDSESGDDATSLPS  615 (1070)
Q Consensus       550 ~~~~~~-~~~~~~~~~~--~~~~~~~~i~~lp-~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  615 (1070)
                      +.+|+. ++|.++..++  ++..++++|..|| ...|.||||||++|+ |||+      ||+|||++||||++-..
T Consensus       622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt-klGEidRARaIya~~sq~~dPr~~~~f  696 (835)
T KOG2047|consen  622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET-KLGEIDRARAIYAHGSQICDPRVTTEF  696 (835)
T ss_pred             HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh-hhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence            888885 4555555554  5666688899999 999999999999999 5994      99999999999999433

>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1972 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK12798 chemotaxis protein; Reviewed Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1070
2ooe_A530 Crystal Structure Of Hat Domain Of Murine Cstf-77 L 2e-05
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77 Length = 530 Back     alignment and structure 
Iteration: 1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 27  EEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKARL 86
           E+ + E   D D W+ L+ E +N   D        Y+  +A+FP    +W+ Y + + + 
Sbjct: 3   EKKLEENPYDLDAWSILIREAQNQPIDKARK---TYERLVAQFPSSGRFWKLYIEAEIKA 59
Query: 87  CSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPNDVRRLFKRALSF----VGKDY 142
            + DKV ++F+R +    + +D+W  Y S    T       +    +A  F    +G + 
Sbjct: 60  KNYDKVEKLFQRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI 118
Query: 143 LCHTMWDKYIEF 154
           + + +W  YI F
Sbjct: 119 MSYQIWVDYINF 130

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1070
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-62
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 3e-11
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 8e-41
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 2e-05
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 3e-04
4e6h_A679 MRNA 3'-END-processing protein RNA14; HAT domain, 1e-37
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 8e-33
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 7e-11
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 9e-09
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 8e-08
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 8e-06
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 1e-04
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 3e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-11
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 6e-10
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-08
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-07
1bg1_A 596 Protein (transcription factor STAT3B); protein-DNA 2e-05
1yvl_A 683 Signal transducer and activator of transcription 1 1e-04
1bf5_A 575 Signal transducer and activator of transcription 1 3e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 7e-04
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
 Score =  221 bits (564), Expect = 1e-62
 Identities = 85/556 (15%), Positives = 177/556 (31%), Gaps = 97/556 (17%)

Query: 26  LEEFIAEGSLDFDEWTSLLSEIENSCPDDIEMIGLVYDSFLAEFPLCYGYWRKYADHKAR 85
            E+ + E   D D W+ L+ E +N     I+     Y+  +A+FP    +W+ Y + + +
Sbjct: 2   AEKKLEENPYDLDAWSILIREAQN---QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK 58

Query: 86  LCSIDKVVEVFERAVQSATYSVDVWFHYCSLSMSTFEDPND----VRRLFKRALSFVGKD 141
             + DKV ++F+R +      +D+W  Y S    T          + + +  AL  +G +
Sbjct: 59  AKNYDKVEKLFQRCLM-KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME 117

Query: 142 YLCHTMWDKYIEFEIS---------QQRWSSLAQIFVQTLRFPSKKLHHYYDSFKKLAGA 192
            + + +W  YI F             QR +++ +++ +    P   +             
Sbjct: 118 IMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL---------- 167

Query: 193 WKEELECESDSAMEFQSELVLEGEVPAYYKDDETSSVIKDLLDPSVDLVRSKAIQKYRFI 252
           W++  + E    +    +++ +                           RS+     R +
Sbjct: 168 WRDYNKYEEGINIHLAKKMIED---------------------------RSRDYMNARRV 200

Query: 253 GEQIYKEASQLDEKINCFENLIRRPYFHVKPLDDIQLKNWHDYLSFAEKQGD-------- 304
                  A + +  +   +           P +  Q+  W  Y+ + +            
Sbjct: 201 -------AKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLI 253

Query: 305 FDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG--------------REIASYALDRAT 350
              V+  YE+CL+    +P+ W     ++E                   + A+   +RA 
Sbjct: 254 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313

Query: 351 QIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDSRFIEKVTFKANMERRLGNFV 410
              LK+  +++   A Y+E         + +       D              RR     
Sbjct: 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373

Query: 411 AACDTYKEALETAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLL 470
           +    +K+A E         T   +YV  + + Y  +     A  I   G+K   +    
Sbjct: 374 SGRMIFKKARED------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427

Query: 471 LEELIKFTMVHGGRSHISIVDAVISNALYSRPDVLKVFSLEDVEDISSLYLQFLDLCGTI 530
           +   I +       ++           L+ R         E   +I + +L F    G +
Sbjct: 428 VLAYIDYLSHLNEDNNT--------RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479

Query: 531 HDIRNAWNQHIKLFPH 546
             I     +    F  
Sbjct: 480 ASILKVEKRRFTAFRE 495
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596 Back     alignment and structure
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 Back     alignment and structure
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 Length = 575 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1070
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 1e-21
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 5e-11
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 3e-06
d2onda1308 a.118.8.7 (A:242-549) Cleavage stimulation factor 1e-04
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-05
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.004
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.0 bits (235), Expect = 1e-21
 Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 36/290 (12%)

Query: 283 PLDDIQLKNWHDYLSFAEKQG--------DFDWVVKLYERCLIPCADYPEFWMRYVDFME 334
           P +  Q+  W  Y+ + +               V+  YE+CL+    +P+ W     ++E
Sbjct: 2   PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61

Query: 335 SKGGREIASY--------------ALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAA 380
                                     +RA    LK+  +++   A Y+E         + 
Sbjct: 62  QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 121

Query: 381 FPESYIDSDSRFIEKVTFKANMERRLGNFVAACDTYKEALETAAEQRKFHTLPLLYVQFS 440
           +       D              RR     +    +K+A E         T   +YV  +
Sbjct: 122 YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE------DARTRHHVYVTAA 175

Query: 441 RLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYS 500
            + Y  +     A  I   G+K   +    +   I +           + +   +  L+ 
Sbjct: 176 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY--------LSHLNEDNNTRVLFE 227

Query: 501 RPDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRT 550
           R         E   +I + +L F    G +  I     +    F      
Sbjct: 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1070
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.97
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.92
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.88
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.86
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.8
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.8
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.72
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.72
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.72
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.67
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.64
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.47
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.43
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.27
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.27
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.26
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.26
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.24
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.22
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.22
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.21
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.05
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.03
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.01
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.99
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.96
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.96
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.93
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 98.92
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.91
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.89
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 98.85
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 98.84
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.78
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.78
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.75
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.72
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.71
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 98.68
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.68
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.63
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 98.57
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.56
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.41
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.37
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 98.29
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.26
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 97.92
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.74
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 96.64
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 96.45
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 95.68
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 95.25
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-36  Score=248.12  Aligned_cols=268  Identities=16%  Similarity=0.221  Sum_probs=229.4

Q ss_pred             CHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC--------------HHHH
Q ss_conf             9577998999999999709--------98899999999842599999999999999995089--------------5699
Q 001486          285 DDIQLKNWHDYLSFAEKQG--------DFDWVVKLYERCLIPCADYPEFWMRYVDFMESKGG--------------REIA  342 (1070)
Q Consensus       285 ~p~~~~~W~~y~~~~~~~g--------~~~~a~~~yerAl~~~p~~~~lW~~ya~~le~~g~--------------~e~A  342 (1070)
                      ++..+++|.+|++|++.++        ..++++.+|+|||..+|.++++|+.|+.|+...++              .++|
T Consensus         4 e~~~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a   83 (308)
T d2onda1           4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA   83 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHH
T ss_conf             79999999999999876865433220369999999999998777999999999999987073688777876310245999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             999999999883000089999999999919999999999987640183-4599999999999981999999999999999
Q 001486          343 SYALDRATQIFLKRLPVIHLFNARYKEQIGDTSAARAAFPESYIDSDS-RFIEKVTFKANMERRLGNFVAACDTYKEALE  421 (1070)
Q Consensus       343 ~~ilerAi~~~~~~~p~i~~~~a~~e~~~g~~eeA~~~~~~al~~~~p-~~~~~w~~~a~le~~~g~~e~A~~iyekal~  421 (1070)
                      +.+|+||+..+.|..+.+|+.++.+++..|++++|+.+|.+++ ...| +...+|+.++.++++.|+++.|+.+|+++++
T Consensus        84 ~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l-~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~  162 (308)
T d2onda1          84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             9999999987499879999999999986133899999999999-871578699999999999982786889999999998


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             98731047883999999999997510998999999999996199909999999999998199860447999999975049
Q 001486          422 TAAEQRKFHTLPLLYVQFSRLTYTTTGSADNARDILIDGIKHVPNCKLLLEELIKFTMVHGGRSHISIVDAVISNALYSR  501 (1070)
Q Consensus       422 ~~~~~~~~~~~~~l~l~~A~~l~~~~g~~e~Ar~iyekaL~~~P~~~~lw~~y~~~e~~~g~~~~~~~ar~llekAl~~~  501 (1070)
                      .      .+..+.+|+.+|.+++...|+.+.|+.+|+++++.+|++..+|..|++|+...|+.++   +|.+|++|+..+
T Consensus       163 ~------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~---aR~~fe~ai~~~  233 (308)
T d2onda1         163 D------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN---TRVLFERVLTSG  233 (308)
T ss_dssp             S------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHSS
T ss_pred             H------CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHC
T ss_conf             0------8886799999999998765577899999999998610038899999999998698689---999999999827


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCC
Q ss_conf             86333699331999999999999980999999999999998199975443457531003345653112225654089
Q 001486          502 PDVLKVFSLEDVEDISSLYLQFLDLCGTIHDIRNAWNQHIKLFPHTVRTAYECPGRETKSLRAFIRGKRESNVASLP  578 (1070)
Q Consensus       502 ~~~~~~~~~~~~~~l~~~y~~~e~~~G~~~~a~~~~~ra~~~~p~~~~~~~~~~~~k~~~~~~~~~~~~~~~i~~lp  578 (1070)
                      +     .+++....||..|+.||..+|+.+.+.++++|+.+++|......       .  ...  ..+|.++....|
T Consensus       234 ~-----~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~-------~--~~~--~~~ry~~~d~~~  294 (308)
T d2onda1         234 S-----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK-------E--TAL--LVDRYKFMDLYP  294 (308)
T ss_dssp             S-----SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC-------H--HHH--HHTTTCBTTBCS
T ss_pred             C-----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC-------H--HHH--HHHHHHHCCCCC
T ss_conf             8-----98689999999999999984999999999999998771102201-------4--899--999987225586
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure