Citrus Sinensis ID: 001490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------107
Protein Sequence
MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEEEEccHHHHHcccccccEEEEEEccccccccccHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccEEEEcccccccEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEEcccccccccccEEEccccccEEEEEccccccEEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccccccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccccccccEEcEEEEEEcccccEEEEEEccccEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEcHHHHHHHHHcccHHHHHHHHccccEccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccccEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
mhrleresrfyfDMKFFEDMILDGKWEDVEQYLSSFtkvddnrystkIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEanpilqgklkfpsiKRQRLRRLINQSLNWQhvhcanpqpnpdintLFVDHVCqlqetdfsgqssesnalppqttqspsswnfsssmltdSAVSFVALslsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipdyspksslkKEMFQsfgetsfsdfpKTVAQTLiegssspmsmdfhpVQHTLLLVGtnvgdtglwdvnsgqklFIRNFKVWDIGACSMLFKTAlvrdpgvsvnrvvwspdgsllgVAYSKHIVQLYAyhggsdarQQLEIdahvgnvndlafsapckqisvitcgddktikVWDAvtgsrtysfeghgapvyslcphakeniHFIFSISVDGKIKAWLYDSlgarvdydapglgctrmaysangrrlfscgtskegESFLVEWNESEGAIKRTYQglqlqhnsvsvvhfdtakdQILAAGDDHVIKIWDMNKVQLLTTidaggglpenpricfnknGTLLAVIANEnrikiletpesnsvdaagvlsdnlrklsvnpistvtgagiangsvsvnedpkedvkpeisveaenksevekplfarpsecqslllpskvkankisrltyNNGGQAIFALASNGVhlmwrwprndltlsteattkvpprlyqprhgpqfmvndttdsnsqeavpcfalskndaylfsaSGGVISLYIVMTFKTIltimppsptatslafnphdnnviaigmddstiLIYNARSSEVISKLEGHSKRVTGLVFSDALNILVssggdaqifvwdvdgwgiqtcrslqtpdgvmtlapsethiqfHKDQTRFLLVHETHLAIYEAEELTclkqwfpissvpisqatfscdcrmvftsfvdgtlsiheASNLEVQCRILSTaylrpttsclhvyphaiaahplkptqfavgltngevyviepnepgdtwavlppdeivgdqptstsegdramdg
Flexible Loop (DISEMBL)
mhrleresrfyfdMKFFEDMILDGKWEDVEQYLSsftkvddnrysTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIeanpilqgklkFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIsvitcgddktIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIletpesnsvdaAGVLSDNLRKLSVNPIStvtgagiangsvsvnedpkedVKPEisveaenksevekplfarpsecqslllpSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEivgdqptstsegdramdg
Low Complexity Region (SEG)
MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Disordered region (IsUnstruct)
********RFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQ*************************************************************************************************************************************FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET********AGVLSDNLRKLSVNPISTVTG*********************************************LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST*******************************AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************
Disordered Region (DISOPRED)
*HRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQR***LIN*SLNWQHVHCANPQPNPDINTLFVDHVCQLQET***GQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL************************SPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV***********************
Disordered Region (DISEMBL)
MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQET***********************NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV***********ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD**************
Disordered Region (DISPRO)
*****RESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1068	2.2.26 [Sep-21-2011]
Q0WV90	1120	Topless-related protein 1	yes	no	0.962	0.917	0.541	0.0
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.984	0.929	0.536	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.970	0.913	0.496	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.958	0.905	0.460	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.964	0.929	0.462	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.268	0.211	0.274	1e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.503	0.352	0.220	1e-14
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.477	0.405	0.220	3e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.470	0.298	0.225	2e-11
P49695	742	Probable serine/threonine	no	no	0.237	0.342	0.248	2e-11

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1154 bits (2986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1095 (54%), Positives = 759/1095 (69%), Gaps = 67/1095 (6%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD  KA++IL KDLK F+  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP+++  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  CQLQE---------TDFSGQSSESNALPP-------QTTQSP-----SSWNFSSSMLTDS 219
            C+L               G   ++   PP       Q T SP     + W  S S +   
Sbjct: 204  CRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHP 263

Query: 220  AVSFVALSLSDPTNKAV-----------TMDRPE-DSDILSEKS-PVRILNEQASTV--- 263
            AVS   ++L  P+ +A             +D P  DSD +S+++ P+ I +E +  V   
Sbjct: 264  AVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGVNML 323

Query: 264  --TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPV 321
              T+PG           ++    + F++       D PKTVA+TL +GSS PMSMDFHP+
Sbjct: 324  PMTFPG-----------QAHGHNQTFKAP-----DDLPKTVARTLSQGSS-PMSMDFHPI 366

Query: 322  QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 381
            + TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV++P VSVNRV+WS
Sbjct: 367  KQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWS 426

Query: 382  PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 441
            PDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND+AFS P KQ+ V TCGDDK
Sbjct: 427  PDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDK 486

Query: 442  TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 501
            TIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDY
Sbjct: 487  TIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDY 546

Query: 502  DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 561
            +APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG      S+ VV 
Sbjct: 547  EAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQG--FHKRSLGVVQ 604

Query: 562  FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621
            FDT K++ LAAGDD  IK WDM+ +QLLT IDA GGL  +PRI FNK G+LLAV AN+N 
Sbjct: 605  FDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNM 664

Query: 622  IKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE--DVKPEI 678
            IK++   +    +     LS    K ++N I  V           +N D +   DVKP I
Sbjct: 665  IKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSIPGMNGDSRNMVDVKPVI 724

Query: 679  SVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 737
            + E+ +KS+V K      PS+C+SL LP  ++  KISRL + N G AI ALASN +HL+W
Sbjct: 725  TEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLW 784

Query: 738  RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 797
            +W RND   + +AT  +PP+ +QP  G   M ND  ++N +EAVPCFALSKND+Y+ SAS
Sbjct: 785  KWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVAETNPEEAVPCFALSKNDSYVMSAS 843

Query: 798  GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 857
            GG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAIGMDDSTI IYN R  EV SK
Sbjct: 844  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 903

Query: 858  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 917
            L+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW  Q  + LQ P G  T + S+T 
Sbjct: 904  LKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTR 963

Query: 918  IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD 975
            +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+  S+ PI+ ATFSCD ++++TSF+D
Sbjct: 964  VQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVRESAAPITHATFSCDSQLIYTSFMD 1022

Query: 976  GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035
             T+ +  ++NL ++CR+  +AYL  + S  +V+P  IAAHP +   FAVGL++G V++ E
Sbjct: 1023 ATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFE 1082

Query: 1036 PNEPGDTWAVLPPDE 1050
            P E    W V PP E
Sbjct: 1083 PLESEGKWGVAPPPE 1097

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1148 bits (2969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1119 (53%), Positives = 768/1119 (68%), Gaps = 68/1119 (6%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD  KA++IL KDLK F+  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP+++  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSP-----SSWNFSSSMLTDS 219
            C                 G   ++   PP       Q T SP     + W  S S +   
Sbjct: 204  CGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQPTASPVPTPLAGWMSSPSSVPHP 263

Query: 220  AVSFVALSLSDPTNKAV-----------TMDRPE-DSDILSEKS-PVRILNEQASTVTYP 266
            AVS  A++L  P+  A            ++D P  DS+ +S+++ P+ I +E    V   
Sbjct: 264  AVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGVNML 323

Query: 267  GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 326
             +S      +S ++      F++       D PKTVA+TL +GSS PMSMDFHP++ TLL
Sbjct: 324  PMS------FSGQAHGHSPAFKAP-----DDLPKTVARTLSQGSS-PMSMDFHPIKQTLL 371

Query: 327  LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386
            LVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL
Sbjct: 372  LVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSL 431

Query: 387  LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446
             GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P KQ+ VITCGDDKTIKVW
Sbjct: 432  FGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVW 491

Query: 447  DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 506
            DA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDYDAPG 
Sbjct: 492  DAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGR 551

Query: 507  GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 566
             CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG   +  S+ VV FDT K
Sbjct: 552  WCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTK 609

Query: 567  DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626
            ++ LAAGDD  IK WDM+ VQLLT ID  GGL  +PRI FNK G+LLAV  NEN IKI+ 
Sbjct: 610  NRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMA 669

Query: 627  TPES-NSVDAAGVLSDNLRKLSVNPI-----STVTGAGIANGSVSV------NEDPKE-- 672
              +    +     +S    K ++N I     +  T AG A+ S +V      N D +   
Sbjct: 670  NSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMV 729

Query: 673  DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 731
            DVKP I+ E+ +KS++ K    + PS+C+SL LP  ++  KISRL + N G AI ALASN
Sbjct: 730  DVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASN 789

Query: 732  GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 791
             +HL+W+W RN+   + +AT  +PP+ +QP  G   M ND  ++N +EAVPCFALSKND+
Sbjct: 790  AIHLLWKWQRNERNATGKATASLPPQQWQPASG-ILMTNDVAETNPEEAVPCFALSKNDS 848

Query: 792  YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 851
            Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAIGMDDSTI IYN R 
Sbjct: 849  YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRV 908

Query: 852  SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 911
             EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW  Q  + L  P G    
Sbjct: 909  DEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQGRPNS 968

Query: 912  APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV-PISQATFSCDCRMVF 970
            APS+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW    S+ PI+ ATFSCD ++V+
Sbjct: 969  APSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVY 1028

Query: 971  TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1030
             SF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  IAAHP +P  FAVGL++G 
Sbjct: 1029 ASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGG 1088

Query: 1031 VYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1067
            V++ EP E    W V PP E       PT+ S G  A D
Sbjct: 1089 VHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/1135 (49%), Positives = 728/1135 (64%), Gaps = 98/1135 (8%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +HRLE+ES F+F+M++FED +  G+W+DVE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD  D AKA++IL K+LK F+  NEELFKE+  LLTL + R++E LSKY GD  SAR  M
Sbjct: 85   LDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKY-GDTKSARGIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            + ELK++IEANP+ + KL+FPS+K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHT 203

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSPSSWNFSSSMLTDSA---- 220
            C                 G   +    PP       Q T +P + + +  M   S     
Sbjct: 204  CGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQPTPAPLTTSLAGWMPNPSVQHPT 263

Query: 221  VSFVALSLSDPTNKAVTM---DRPE--------------DSD-ILSEKSPVRI------L 256
            VS   + L  P N AV+M   +RP               DS+ +L    P  I      L
Sbjct: 264  VSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDYQTADSESVLKRPRPFGISDGVNNL 322

Query: 257  NEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS--DFPKTVAQTLIEGSSSPM 314
                  VTYPG                    QS    ++S  D PK V++ L +GS+   
Sbjct: 323  PVNVLPVTYPG--------------------QSHAHATYSTDDLPKNVSRILSQGSAI-K 361

Query: 315  SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374
            SMDFHPVQ T+LLVGTN+GD  +W+V S +KL  R+FKVWD+  C++  + +L  +   +
Sbjct: 362  SMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASEYTAA 421

Query: 375  VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
            VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R  LEIDAH GNVNDLAFS P +Q+ V
Sbjct: 422  VNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLCV 481

Query: 435  ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494
            +TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH KENI FIFS +VDGKIKAWLYD+
Sbjct: 482  VTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDN 541

Query: 495  LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
            +G+RVDYDAPG  CT MAY A+G RLFSCGTSKEGESF+VEWNESEGA+KRTY GL  + 
Sbjct: 542  MGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGKR- 600

Query: 555  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
             SV VV FDT K++ L AGD+  +K WDM+ V LL++  A GGLP +P +  NK GTLLA
Sbjct: 601  -SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTLLA 659

Query: 615  VIANENRIKILETPES----NSVDAAGVLSDNLRKLSV--NPI-------STVTGAGIAN 661
            V   +N IKIL   E     +S+   G+ S      SV   PI       ++ TG  ++ 
Sbjct: 660  VSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSM 719

Query: 662  GSVS--------VNEDPKE--DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 711
            G  S        +N D +   DVKP I+ +AE     +    +  S+ ++L LP  +   
Sbjct: 720  GERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRLPDTLLPA 779

Query: 712  KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 771
            ++ +L Y N G AI ALA N  H +W+W +++  L  +A + VPP+L+QP  G   M ND
Sbjct: 780  RVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSG-VLMTND 838

Query: 772  TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 831
            T + N ++ VPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T M P P ATSLAF+P D
Sbjct: 839  TREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQD 898

Query: 832  NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 891
            NN+IAIGMDDS+I IYN R  EV SKL+GH KRVTGL FS+ LN+LVSSG D+Q+ VW +
Sbjct: 899  NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSM 958

Query: 892  DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP 951
            DGW  Q  + +Q P G      + T +QFH+DQ   L+VH + LAIYEA +L  +KQW P
Sbjct: 959  DGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIP 1018

Query: 952  I-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1010
              SS  ++ A +SCD + ++ +F DG++SI  A+ L+++CRI   +YL P+     VYP 
Sbjct: 1019 KESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYL-PSNPSSRVYPA 1077

Query: 1011 AIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV-LPPDEIVGDQPTSTSEGDR 1064
             +AAHP +P QFAVGLT+G V+VIEP  P   W +  PP+   G   +S    D+
Sbjct: 1078 TVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAPGSDQ 1132

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1096 (46%), Positives = 705/1096 (64%), Gaps = 72/1096 (6%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F++K+FE+  L G+W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD +D AKA+ IL KDLK FA  NEEL+KE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKY-GDTKSARSIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
              ELK++IEANP+ + KL FPS K  RLR LINQSLNWQH  C NP+PNPDI TLF+DH 
Sbjct: 144  YTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHS 203

Query: 181  CQLQETDFSGQSSESNALPPQTTQSPSSW--------NFSSSMLTDSAVSFVALSLSDPT 232
            C         ++     LP      PS++         F S+       + +A  +++P 
Sbjct: 204  CSPSN---GARALTPVNLPVAAVARPSNFVPLGVHGGPFQSNPAPAPNANALAGWMANPN 260

Query: 233  NKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQ---- 288
              +        S +++  SP  +   Q + + +P     ++     +S+  +++ +    
Sbjct: 261  PSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRS 314

Query: 289  ------------SFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTG 336
                        S    S  D P+ V  T+ +GS   +SMDFHP  HTLL VG + G+  
Sbjct: 315  AQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPSHHTLLAVGCSSGEVT 373

Query: 337  LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 396
            LW+V S +K+    FK+W++ ACS++F+ ++V++P +SV RV WSPDG+LLGV+++KH++
Sbjct: 374  LWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLI 433

Query: 397  QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 456
             +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK IKVWD ++G + ++
Sbjct: 434  HVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD-LSGKKLFT 491

Query: 457  FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 516
            FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDYDAPG  CT M YSA+
Sbjct: 492  FEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSAD 551

Query: 517  GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 576
            G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G   +  S  VV FDT +++ LA G+D+
Sbjct: 552  GSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--FRKKSAGVVQFDTTRNRFLAVGEDN 609

Query: 577  VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV---------IANENRIKILET 627
             IK W+M+   LLT ++A GGLP  PR+ FNK+G LLAV         +AN + ++ L  
Sbjct: 610  QIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRA 669

Query: 628  PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS- 686
             E+ S +A+    D   K+S + +++     I          P         +EA +++ 
Sbjct: 670  FEARSFEASKASID--MKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGIEAMSRTM 727

Query: 687  ---------EVEKPL----FARPSECQSLLLP-SKVKANKISRLTYNNGGQAIFALASNG 732
                     +  KPL       P++C+ + +P SK   +K++RL Y N G  + AL SNG
Sbjct: 728  EKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNG 787

Query: 733  VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 792
            V  +W+W RN+   + +AT  V P+ +QP  G   M ND  + N + +VPC ALSKND+Y
Sbjct: 788  VQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLMANDVPE-NPEGSVPCIALSKNDSY 845

Query: 793  LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 852
            + SA GG +SL+ +MTFK + T MPP P +T LAF+P DNN+IAIGM+DS+I IYN R  
Sbjct: 846  VMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVD 905

Query: 853  EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 912
            EV +KL+GH K +TGL FS ALNILVSSG DAQ+F W  D W  +   ++Q P G   + 
Sbjct: 906  EVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPGKAPVG 965

Query: 913  PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVF 970
              +T +QFH DQ + L+ HET LAIY+A ++ C+ +W P  ++  PI+ A++SC+ ++V+
Sbjct: 966  --DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVY 1023

Query: 971  TSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1029
             SF DG +++ +A +L ++CRI  +AY+ +PT +   ++P  I AHP +P Q AVGL++G
Sbjct: 1024 ASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDG 1083

Query: 1030 EVYVIEPNEPGDTWAV 1045
             V VIEP+E    W V
Sbjct: 1084 SVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score =  972 bits (2513), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1105 (46%), Positives = 693/1105 (62%), Gaps = 75/1105 (6%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +HRLE+ES F+F+ K+F++ +L G+W+DVE YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD  + AKA+ IL +DL+ F+  NEEL+KE+ QLLTL + R++E LSKY GD  +AR  M
Sbjct: 85   LDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLTLQNFRENEQLSKY-GDTKTARGIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            + ELK++IEANP+ + KL FP+++  RLR LINQSLNWQH  C NP+PNPDI TLF DH 
Sbjct: 144  LGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHT 203

Query: 181  CQLQETDFSGQSSESNALPPQTTQSPSSW-------------------NFSSSMLTDSAV 221
            C L     +  +      P  T   P+++                     +S M   S  
Sbjct: 204  CTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHVPFPPGPAAANAGALASWMAAASGA 260

Query: 222  SFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYS---- 277
            S V  ++  P      M +P++         + IL    +    PG+     PD+     
Sbjct: 261  SAVQAAVVTP----ALMPQPQNQ--------MSILKRPRTPPATPGIVDYQNPDHELMKR 308

Query: 278  --PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV 332
              P  S+++  + +  +    S  D P   A  L +GS+   SM+F+P+Q+TLLLVG+  
Sbjct: 309  LRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTV-TSMEFYPMQNTLLLVGSAT 367

Query: 333  GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 392
            G+  LW++ + ++L  R FK+WD+  CS  F+  + ++  +SV RV WSPDG+ +GVA++
Sbjct: 368  GEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDGNFIGVAFT 427

Query: 393  KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 452
            KH++QLYA+ G +D RQ  EIDAHVG VNDLAF+ P +Q+ VITCGDDK IKVWD V+G 
Sbjct: 428  KHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVWD-VSGR 486

Query: 453  RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 512
            + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CTRM 
Sbjct: 487  KHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGKWCTRML 546

Query: 513  YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 572
            YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+  + Q     VV FDT+K+  LA 
Sbjct: 547  YSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK--EFQKKLAGVVQFDTSKNHFLAV 604

Query: 573  GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-N 631
            G+D  IK WDMN + +LT+ DA GGLP  P + FNK+G LLAV   +N  KIL  P    
Sbjct: 605  GEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILANPAGFR 664

Query: 632  SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE-------------DPKEDVKPEI 678
            S+ A    +    +  V+    V GA +A+ +  V               DP    K  I
Sbjct: 665  SLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVERGSPVRHSQMLNGVDPS---KSRI 720

Query: 679  SVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKISRLTYNNGGQAIFALASNGVHLMW 737
                +     +      PS+C    LP     + K+ +L Y N G  I AL SNG+  +W
Sbjct: 721  DDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSNGIQRLW 780

Query: 738  RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 797
            +W  N+   S +AT  V P+ +QP  G   M ND +  N + A PC ALSKND+Y+ SA+
Sbjct: 781  KWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVSGVNLENAAPCIALSKNDSYVMSAA 839

Query: 798  GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 857
            GG +SL+ +MTFK + T MPP P +T LAF+P DNNVIAIGM+DSTI IYN R  EV SK
Sbjct: 840  GGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSK 899

Query: 858  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 917
            L+GH KR+TGL FS ALNILVSSG DAQI  W +D W  +   ++Q P G    A  +T 
Sbjct: 900  LKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAG--KAANGDTR 957

Query: 918  IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVD 975
            +QFH DQ R L+VHET LA+++A ++ C++QW P  S+  PIS A ++C+ ++++T+F D
Sbjct: 958  VQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTFRD 1017

Query: 976  GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035
            G + + +A +L ++CRI  +AYL      L   P  +AAHP  P QFAVGL +G V ++E
Sbjct: 1018 GNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLVVAAHPQDPNQFAVGLNDGSVKMME 1075

Query: 1036 PNEPGDTWAVLPPDEIVGDQPTSTS 1060
            P E    W ++PP E + + P++TS
Sbjct: 1076 PTEGEGKWGMIPPSEAI-NSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)

Query: 301  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 358
            T  QTL    SS +S+ F P       V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 359  CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 418
            C     T  +   G SV  V +SPDG  +        ++++    G+   Q LE   H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052

Query: 419  NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 476
             V  + FS   ++++  +  DD TIK+WDAV+G+ T + EGHG  V+S+   P  +    
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107

Query: 477  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 536
             + S S+DG IK W   S       +  G     +A+S +G+R+     S   +  +  W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162

Query: 537  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 596
            + + G   +T +G       V  V F     ++ +   D  IKIWD        T++  G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 597  GLPENPRICFNKNGTLLAVIANENRIKILET 627
            G  ++  + F+ +G  +A  +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)

Query: 325  LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 384
            +L  G++     LWD++SGQ              C   FK    R     V  VV+SP+ 
Sbjct: 920  MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960

Query: 385  SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 443
             +L    S   V+L+    G    + L I   H G V  +AF+     ++  T   D+T+
Sbjct: 961  LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014

Query: 444  KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 503
            ++WD  +    Y F+GH + V S+   +   +  + S S D  ++ W  D       Y  
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070

Query: 504  PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 561
             G   C R + +S +G  L S G     +  +  W+ S G    T QG     + V  + 
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123

Query: 562  FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 621
            F      +     D ++++WD++  + L T+   G       + F+ +G  LA  + +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181

Query: 622  IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 674
            +++ +   S  +      +  +  +  NP  +   +G ++ +V + E             
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241

Query: 675  ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 724
                      P+ S+ A   S+    L+    S+C   L   +   N ++ + +N  G  
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298

Query: 725  IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 764
            + + + +    +W                W  +     D T+    +     RL+    G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 765  PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 823
                    T       V     S + A L S SG   + L+ + + K + T+   +    
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414

Query: 824  SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 883
            S+ F+P D  ++A G DD T+ ++N  S E +  L GH   V  + FS    IL S   D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473

Query: 884  AQIFVWDVD-GWGIQTCRSLQTPDGV 908
              I +WDV  G  I+T +S +  +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 35/545 (6%)

Query: 350  NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 409
            + +VW++ +  +L    + R     V  VV+SPDG +L    +   V+L++   G   + 
Sbjct: 665  HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720

Query: 410  QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 469
               +  H   V  +AF    + ++  +   DKTIK+WD   G+   +  GH   V   C 
Sbjct: 721  --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774

Query: 470  HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 528
                + + + S + D  IK W   S G  +       G  R +A+SA+G+ L     S  
Sbjct: 775  AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829

Query: 529  GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 588
            G+  +  WN   G   +TY G     NSV  + +      +++   D  IK+WD      
Sbjct: 830  GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886

Query: 589  LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 648
            + T+   G   E   + F+ +G  LA ++ +  +++        + A    +D    ++ 
Sbjct: 887  IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944

Query: 649  NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 708
            +P   +  +G  + +V + +         IS    +   +    F+  S  Q+L   S  
Sbjct: 945  SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999

Query: 709  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 768
             + ++  ++     Q I    ++ V+ +   P+  +  +  A   V  +L+    G    
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055

Query: 769  VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 827
                T S   + +   A S +   L SAS    + L+   T + +  +   S    S  F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112

Query: 828  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 887
            +P +  +IA    D T+ I++ +  + +  L GH+  V  + FS    IL S+  D  + 
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171

Query: 888  VWDVD 892
            +WDV+
Sbjct: 1172 IWDVN 1176

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)

Query: 374  SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
            +V  V +SPDG  +    S   ++L+    G+  +    I  H   VN++ FS   K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171

Query: 434  VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 490
              +   D +IK+WD  +G    +  GH A V ++   P  +     I + S D  +K W 
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225

Query: 491  -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 545
                 L  +L    D+         +++S +G+ L S    K     +  W  ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275

Query: 546  TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 605
            T +G    ++SV  V+F +    I +A  D+ IK+W+ + ++L T     GG+     + 
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329

Query: 606  FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 662
            F  +  ++A  + +N I++ + P  + ++   VL+ N    +V+ +   S +  AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385

Query: 663  SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 720
            ++ +                              S+  SLL  LP               
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402

Query: 721  GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 780
            G +AI+ ++          P+ DL  S  A   V  ++++ R G         D+     
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448

Query: 781  VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 839
            V     S +   L SAS    + L+ V   K   T+   +     ++F+P D  +IA   
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507

Query: 840  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 898
             D TI ++++ S  +I  L  H+  V  + F+   ++L S+  D  + +W   DG  + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567

Query: 899  --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 950
                      S  +PDG    + SE       D+T  +   + HL       LT L    
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609

Query: 951  PISSVPISQATFSCDCRMVFTSFVDGTLSI 980
            P     +  A FS D + + +  +D T  I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 20/274 (7%)

Query: 351 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 410
             VWD+ +   L       D    V  V +SPDG+LL        V+L+     + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536

Query: 411 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470
              + H   V D+AFS     ++  +   D T ++W+  TG+     +GH   VY++   
Sbjct: 537 AVFEGHTHYVLDIAFSPDGSMVA--SGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA-- 592

Query: 471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 530
              +   + S S DG I+ W   +   R    AP      +A+S +G  L         +
Sbjct: 593 FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----SD 647

Query: 531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 590
           S +  W+ + G    T++G     + V  V F      + +  DD  I++WD+   +  T
Sbjct: 648 STVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT 704

Query: 591 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624
           T++ G   P +  + F+  GT LA  + +  I+I
Sbjct: 705 TLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1068
224141931	1109	predicted protein [Populus trichocarpa]	0.971	0.935	0.583	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.957	0.903	0.553	0.0
357455301	1134	WD repeat-containing protein, putative [	0.958	0.902	0.547	0.0
357455305	1149	WD repeat-containing protein, putative [	0.958	0.891	0.547	0.0
357455303	1112	WD repeat-containing protein, putative [	0.958	0.920	0.553	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.956	0.902	0.548	0.0
357458875	1138	WD repeat-containing protein, putative [	0.959	0.900	0.550	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.969	0.911	0.547	0.0
297839887	1120	hypothetical protein ARALYDRAFT_895943 [	0.955	0.911	0.544	0.0
24461849	1127	CTV.2 [Citrus trifoliata]	0.954	0.904	0.550	0.0

>gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa]

 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1076 (58%), Positives = 763/1076 (70%), Gaps = 38/1076 (3%)

Query: 4    LERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG 63
            LERES +YF MKFFEDMI  G W++ E+YLS FTK+DDNRYSTKIYFEIRKQ F E LD 
Sbjct: 28   LERESGYYFSMKFFEDMIRSGNWDEAERYLSCFTKLDDNRYSTKIYFEIRKQKFLEVLDN 87

Query: 64   HDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLE 123
             + +KAL+IL KDLK FAP NEEL KE+  LLTL++IRDHE LS  Y DA SARK MM+E
Sbjct: 88   DERSKALDILMKDLKAFAPDNEELLKEMTLLLTLNNIRDHESLS-MYSDAESARKVMMVE 146

Query: 124  LKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQL 183
            LK++IEANP+L+ KL+FP+I   RLRRLINQSLNWQH+HCA PQPNPDI TLFVDH+C  
Sbjct: 147  LKKVIEANPLLRDKLEFPNIANHRLRRLINQSLNWQHMHCAYPQPNPDIRTLFVDHICVP 206

Query: 184  QETD---FSGQSSESNALPPQTTQ----SPSSWNFSSSMLTDSAVSFVALSLSDPTNKAV 236
              +D   FS  +S+SN LP QTT     + S+ N +SS    S++S  ALSL  PTN   
Sbjct: 207  IPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSASNSTSSSEAHSSISSEALSLGVPTNIGS 265

Query: 237  TMDRPEDSDILS-------EKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 289
             +   E   +LS         + + +L E  +TV   G+    I +    S+    +F  
Sbjct: 266  FIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTTVNDSGIPKNRIVNLKRPSNEASLIFHF 324

Query: 290  FGETSFS-----DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ 344
            F     S     D PK V + L EGSS P SMDFHP + T+LLVGT VGD GLW+V+SG+
Sbjct: 325  FLLKHCSVNISDDLPKNVFRILNEGSS-PTSMDFHPEKQTVLLVGTTVGDIGLWEVSSGE 383

Query: 345  KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 404
             L  RNFKVWDI ACSM+FK  L++DP VSVNRV WSP+G L GVAYSKH+VQ+Y+Y+  
Sbjct: 384  SLLSRNFKVWDIAACSMMFKATLLKDPSVSVNRVAWSPEGGLFGVAYSKHLVQIYSYNEA 443

Query: 405  SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464
             DARQQLEIDAHVG VNDL FSAP KQ+ VITCGDDK +K WDA  G + Y+FEGH APV
Sbjct: 444  KDARQQLEIDAHVGGVNDLTFSAPEKQLLVITCGDDKIVKAWDATDGVKMYTFEGHDAPV 503

Query: 465  YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524
            YSLCP++K N+HF+F+ SV+G IK WLYD+LGARVDYDAPGLGCT MAYS + RRLFSCG
Sbjct: 504  YSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGARVDYDAPGLGCTSMAYSGD-RRLFSCG 562

Query: 525  TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 584
            TS  GESFLVEW++SEGAIKRTY G  LQ NS SVV FD  K+Q+LAAGD+HVIKIWDMN
Sbjct: 563  TSGSGESFLVEWDDSEGAIKRTYLG--LQKNSSSVVQFDIMKNQVLAAGDEHVIKIWDMN 620

Query: 585  KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDN 642
            K++L TTIDA GGLP NP + FNK GTLLAV AN+N+IKIL    S  +       L D+
Sbjct: 621  KIELFTTIDAEGGLPANPCVRFNKEGTLLAVSANDNKIKILAKDGSLQSLHTTENCLDDD 680

Query: 643  LRKLSVNPISTVTGAGIANGSVS------VNEDPKEDVKPEISVEAENKSEVEKPLFARP 696
             R +S   IS    A  A+ +V+      +     + VK +I+ +              P
Sbjct: 681  FRLVS-EAISKGACAQDADEAVAKQCFNLLQNGNLKAVKSKITGKDTKSKSGRLIELNSP 739

Query: 697  SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 756
            S+CQ L LPS +KANKISRL YNN G +I AL SN  HL W+WP+ND  LS  A  KV P
Sbjct: 740  SQCQILRLPSHMKANKISRLIYNNAGNSILALTSNATHLYWKWPQNDFDLSDTAAAKVSP 799

Query: 757  RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM 816
            +L+QPR     M ND T SN +E VPCFALS+ND+YL S+SGG ISLY ++ FKT+L+IM
Sbjct: 800  QLWQPRSYSGLMTNDLTGSNPEETVPCFALSRNDSYLMSSSGGRISLYNLLKFKTMLSIM 859

Query: 817  PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 876
             P P AT +AF+P DNN++AIG D+STILIYN RS++VI+ LEGHSKRV+GL FS+ LN+
Sbjct: 860  QPPPAATCIAFHPQDNNILAIGRDNSTILIYNVRSAKVITILEGHSKRVSGLAFSNDLNL 919

Query: 877  LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS-ETHIQFHKDQTRFLLVHETHL 935
            LVSSG DAQIFVW+V+GW  Q    LQ PDG +  + S +THIQFH++QT FL VHETHL
Sbjct: 920  LVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRIPFSLSTDTHIQFHQNQTEFLSVHETHL 979

Query: 936  AIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 994
            AIYEA +L C+KQW P   + PIS ATFSCD +MV+ SF+DG +SI +AS+ ++ C+I  
Sbjct: 980  AIYEARKLECVKQWIPGDFATPISHATFSCDGQMVYASFLDGLVSIFDASDFQLYCQINP 1039

Query: 995  TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
            TAYL PT+S L VYP AIAAHP +P QFAVGLT+G V V EP      W++L  DE
Sbjct: 1040 TAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLTDGGVIVFEPPISAGKWSMLTADE 1094

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1184 bits (3062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1114 (55%), Positives = 768/1114 (68%), Gaps = 91/1114 (8%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +KA+ IL KDLK FA  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSP-----SSWNFSSSMLTDS 219
            C                 G   ++   PP       Q T +P     + W  + + +   
Sbjct: 204  CGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHP 263

Query: 220  AVSFVALSLSDPTNKAV-----------TMDRPE-DSDILSEKS-PVRILNE-----QAS 261
            AVS  A+ L  P+  A            ++D P  DSD +S+++ P+ + +E        
Sbjct: 264  AVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPIGMSDEVNLPVNVL 323

Query: 262  TVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDF 318
            + T+PG       N PD                     D PKT  ++L +GSS PMSMDF
Sbjct: 324  SATFPGHGHGQAFNAPD---------------------DLPKTAMRSLNQGSS-PMSMDF 361

Query: 319  HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV 378
            HPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVWD+ ACSM F+ ALV+DPGVSVNRV
Sbjct: 362  HPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRV 421

Query: 379  VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 438
            +WSPDG+L GVAYS+HIVQ+Y+YHGG D  Q LEIDAHVG VNDLAFS P KQ+ VITCG
Sbjct: 422  IWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQLCVITCG 481

Query: 439  DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 498
            DDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+R
Sbjct: 482  DDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSR 541

Query: 499  VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS 558
            VDY+APG  CT MAYSA+G RLFSCGTSKEGES +VEWNESEGA+KRTYQG + +  S+ 
Sbjct: 542  VDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKR--SLG 599

Query: 559  VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 618
            VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK+G LLAV AN
Sbjct: 600  VVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSAN 659

Query: 619  ENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTVTG----------AGIA 660
            EN IKIL   +         NS+      S+ + K ++NPIS              A   
Sbjct: 660  ENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAALAERASSV 719

Query: 661  NGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLT 717
                ++N D +   DVKP IS E+ +KS++ K      PS+C+SL LP  V+ NKISRL 
Sbjct: 720  VAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLI 779

Query: 718  YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 777
            Y N G AI ALASN +HL+W+W RND   + +AT  V P+L+QP  G   M ND TD+N+
Sbjct: 780  YTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSG-ILMTNDITDNNT 838

Query: 778  QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 837
            ++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAI
Sbjct: 839  EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 898

Query: 838  GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 897
            GMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG DAQI VW+ DGW  Q
Sbjct: 899  GMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQ 958

Query: 898  TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVP 956
              R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  SS P
Sbjct: 959  KSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAP 1018

Query: 957  ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1016
            IS ATFSCD ++++ SF+D T+ +   SNL ++CRI  +AYL  + S  +V P  IAAHP
Sbjct: 1019 ISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASVSS-NVQPLVIAAHP 1077

Query: 1017 LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
             +P QFAVGL++G V+V EP+E    W V PP E
Sbjct: 1078 QEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1115 (54%), Positives = 762/1115 (68%), Gaps = 91/1115 (8%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES FYF+MK+FE+ + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +K + IL KDLK F+  NEELFKE+ QLLTL++ R++E LSK YGD  SAR  M
Sbjct: 85   LDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSK-YGDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSPSSWNFSSSMLTDSAVSFV 224
            C                 G   +    PP       Q T +P     +  M   + V+  
Sbjct: 204  CGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPFQPTPAPVPMPLAGWMSNPTPVAHP 263

Query: 225  ALSL---------------------SDPTNKAVTMDRPE-DSDILSEKS-PVRILNE--- 258
            ++S                      + PTN +V  D P  DSD +S+++ P+ + +E   
Sbjct: 264  SVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--DYPSGDSDHISKRTRPIGMSDEGNL 321

Query: 259  --QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSM 316
                 + T+PG                    Q+F   S  D PKTV +TL +G SSPMSM
Sbjct: 322  PVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPMSM 362

Query: 317  DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376
            DFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VSVN
Sbjct: 363  DFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVSVN 422

Query: 377  RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 436
            RV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ VIT
Sbjct: 423  RVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVIT 482

Query: 437  CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 496
            CGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG
Sbjct: 483  CGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLG 542

Query: 497  ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 556
            +RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +  S
Sbjct: 543  SRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR--S 600

Query: 557  VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 616
            + VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLAV 
Sbjct: 601  LGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLAVS 660

Query: 617  ANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGAGI 659
            ANEN IKI         L + E++S DA+   S+ + K  +NP+        + +  A  
Sbjct: 661  ANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERASS 719

Query: 660  ANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRL 716
                  +N D +   D+KP IS E+ +KS++ K      PS C+SL LP   +  KISRL
Sbjct: 720  VAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKISRL 779

Query: 717  TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 776
             Y N G AI ALASN +HL+W+W RND   S +AT  VPP+L+QP  G   M ND  D+N
Sbjct: 780  IYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDINDNN 838

Query: 777  SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
            +++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IA
Sbjct: 839  TEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 898

Query: 837  IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 896
            IGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW  
Sbjct: 899  IGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGWEK 958

Query: 897  QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSV 955
            Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  ++ 
Sbjct: 959  QKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDAAA 1018

Query: 956  PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1015
            PIS ATFSCD  ++F SF+D T+ +  ASNL ++CRI  +AYL    S  ++ P  IAAH
Sbjct: 1019 PISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIAAH 1078

Query: 1016 PLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
            P +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1079 PHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1169 bits (3024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1115 (54%), Positives = 762/1115 (68%), Gaps = 91/1115 (8%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES FYF+MK+FE+ + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 40   VHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 99

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +K + IL KDLK F+  NEELFKE+ QLLTL++ R++E LSK YGD  SAR  M
Sbjct: 100  LDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSK-YGDTKSARAIM 158

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 159  LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 218

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSPSSWNFSSSMLTDSAVSFV 224
            C                 G   +    PP       Q T +P     +  M   + V+  
Sbjct: 219  CGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPFQPTPAPVPMPLAGWMSNPTPVAHP 278

Query: 225  ALSL---------------------SDPTNKAVTMDRPE-DSDILSEKS-PVRILNE--- 258
            ++S                      + PTN +V  D P  DSD +S+++ P+ + +E   
Sbjct: 279  SVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--DYPSGDSDHISKRTRPIGMSDEGNL 336

Query: 259  --QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSM 316
                 + T+PG                    Q+F   S  D PKTV +TL +G SSPMSM
Sbjct: 337  PVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPMSM 377

Query: 317  DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 376
            DFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VSVN
Sbjct: 378  DFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVSVN 437

Query: 377  RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 436
            RV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ VIT
Sbjct: 438  RVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVIT 497

Query: 437  CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 496
            CGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG
Sbjct: 498  CGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLG 557

Query: 497  ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 556
            +RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +  S
Sbjct: 558  SRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR--S 615

Query: 557  VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 616
            + VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLAV 
Sbjct: 616  LGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLAVS 675

Query: 617  ANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGAGI 659
            ANEN IKI         L + E++S DA+   S+ + K  +NP+        + +  A  
Sbjct: 676  ANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERASS 734

Query: 660  ANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRL 716
                  +N D +   D+KP IS E+ +KS++ K      PS C+SL LP   +  KISRL
Sbjct: 735  VAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKISRL 794

Query: 717  TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 776
             Y N G AI ALASN +HL+W+W RND   S +AT  VPP+L+QP  G   M ND  D+N
Sbjct: 795  IYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDINDNN 853

Query: 777  SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
            +++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IA
Sbjct: 854  TEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 913

Query: 837  IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 896
            IGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW  
Sbjct: 914  IGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGWEK 973

Query: 897  QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSV 955
            Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  ++ 
Sbjct: 974  QKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDAAA 1033

Query: 956  PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1015
            PIS ATFSCD  ++F SF+D T+ +  ASNL ++CRI  +AYL    S  ++ P  IAAH
Sbjct: 1034 PISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIAAH 1093

Query: 1016 PLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
            P +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1094 PHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1168 bits (3022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/1093 (55%), Positives = 755/1093 (69%), Gaps = 69/1093 (6%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES FYF+MK+FE+ + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +K + IL KDLK F+  NEELFKE+ QLLTL++ R++E LSK YGD  SAR  M
Sbjct: 85   LDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSK-YGDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSPSSWNFSSSMLTDSAVSFV 224
            C                 G   +    PP       Q T +P     +  M   + V+  
Sbjct: 204  CGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPFQPTPAPVPMPLAGWMSNPTPVAHP 263

Query: 225  ALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSP 278
              S+S      + +  P   D +S+++ P+ + +E        + T+PG           
Sbjct: 264  --SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEGNLPVNVLSATFPG----------- 310

Query: 279  KSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW 338
                     Q+F   S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW
Sbjct: 311  -----HGHGQAF--NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLW 362

Query: 339  DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 398
            ++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+
Sbjct: 363  ELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQI 422

Query: 399  YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE 458
            Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FE
Sbjct: 423  YSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFE 482

Query: 459  GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 518
            GH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G 
Sbjct: 483  GHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGT 542

Query: 519  RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 578
            RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  I
Sbjct: 543  RLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSI 600

Query: 579  KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPE 629
            K WDM+ +QLLTT+DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E
Sbjct: 601  KFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLE 660

Query: 630  SNSVDAAGVLSDNLRKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEIS 679
            ++S DA+   S+ + K  +NP+        + +  A        +N D +   D+KP IS
Sbjct: 661  NSSYDASRT-SEAMTKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRIS 719

Query: 680  VEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 738
             E+ +KS++ K      PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+
Sbjct: 720  EESNDKSKIWKLTEINEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWK 779

Query: 739  WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG 798
            W RND   S +AT  VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASG
Sbjct: 780  WQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASG 838

Query: 799  GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858
            G ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL
Sbjct: 839  GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898

Query: 859  EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 918
            +GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +
Sbjct: 899  KGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRV 958

Query: 919  QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGT 977
            QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T
Sbjct: 959  QFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDAT 1018

Query: 978  LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037
            + +  ASNL ++CRI  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP 
Sbjct: 1019 ICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPL 1078

Query: 1038 EPGDTWAVLPPDE 1050
            E    W V PP E
Sbjct: 1079 ESEGKWGVPPPIE 1091

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1165 bits (3013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1117 (54%), Positives = 768/1117 (68%), Gaps = 95/1117 (8%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +KA+ IL KDLK FA  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSP-----SSWNFSSSMLTDS 219
            C                 G   ++   PP       Q T +P     + W  + + +  +
Sbjct: 204  CGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHA 263

Query: 220  AVSFV-ALSLSDPTNKAV-----------TMDRPE-DSDILSEKS-PVRILNE-----QA 260
            AVS   A+ L  P+  A            ++D P  DSD +++++ P+ I +E       
Sbjct: 264  AVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNV 323

Query: 261  STVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHP 320
             + T+PG                 +  Q+F      D PKTV +TL +GSS PMSMDFHP
Sbjct: 324  LSATFPG---------------HGQHSQAFNAPD--DIPKTVVRTLNQGSS-PMSMDFHP 365

Query: 321  VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 380
            +Q +LLLVGT+VGD  LW+V S ++L  RNFKVWD+ ACSM F+ ALV+DPGVSVNRV+W
Sbjct: 366  MQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIW 425

Query: 381  SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 440
            SPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ VITCGDD
Sbjct: 426  SPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDD 485

Query: 441  KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 500
            KTIKVWDA +G++ Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+RVD
Sbjct: 486  KTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVD 545

Query: 501  YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 560
            Y+APG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG   +  S+ VV
Sbjct: 546  YEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQG--FRKRSLGVV 603

Query: 561  HFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 620
             FDT K++ LAAGDD  IK WDM+ VQLLTT+DA GGLP +PRI FNK+GTLLAV ANEN
Sbjct: 604  QFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANEN 663

Query: 621  RIKILETPES--------NSVDAAGVLSDNLRKLSVNPI-----------------STVT 655
             IKIL   +         NS+  A   S+ L K ++NPI                 S V 
Sbjct: 664  GIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAALAERASSVVA 723

Query: 656  GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 714
             AG+   + ++      DVKP IS E+ +KS++ K       S+C+SL LP  V+  KIS
Sbjct: 724  IAGMNGDTRNLG-----DVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVTKIS 778

Query: 715  RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 774
            RL Y N G AI ALASN +HL+W+W RN+   S +AT  + P+L+QP  G   M ND  D
Sbjct: 779  RLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSG-ILMTNDIAD 837

Query: 775  SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 834
            SN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 838  SNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 897

Query: 835  IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 894
            IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG DAQI VW+ DGW
Sbjct: 898  IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGW 957

Query: 895  GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 953
              Q  R LQ P G    A S+T +QFH+DQ +FL+VHET LAIYEA +L  LKQWFP  S
Sbjct: 958  EKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDS 1017

Query: 954  SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1013
            S PIS ATFSCD ++VF SF+D T+ +  ASNL ++CRI  ++YL P +   ++ P  IA
Sbjct: 1018 SAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYL-PASVSSNIQPLVIA 1076

Query: 1014 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
            AHP +P QFA+GL++G V+V EP E    W V PP E
Sbjct: 1077 AHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIE 1113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1116 (55%), Positives = 763/1116 (68%), Gaps = 91/1116 (8%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +KA+ IL KDLK FA  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C---------QLQETDFSGQSSESNALPPQTTQSP------------SSWNFSSSMLTDS 219
            C             +   G   ++   PP     P            + W  + + +  +
Sbjct: 204  CGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPNPAAVPTQLAGWMSNPTTVAHA 263

Query: 220  AVSFV-ALSLSDPTNKAV-----------TMDRPE-DSDILSEKS-PVRILNEQASTV-- 263
            AVS   A+ L  P+               ++D P  DSD +++++ P+ I +E    V  
Sbjct: 264  AVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSGDSDHVAKRTRPMGITDEVNLPVNV 323

Query: 264  ---TYPGVSLK---NIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMD 317
               T+PG       N PD  P                    PKTV +TL +GSS PMSMD
Sbjct: 324  LSGTFPGHGHSQAFNAPDDLP-------------------LPKTVTRTLNQGSS-PMSMD 363

Query: 318  FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 377
            FHPVQ +LLLVGTNVG   LW+V S +KL  RNFKVWD+ ACSM F+ ALV+DP VSVNR
Sbjct: 364  FHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKVWDLSACSMPFQAALVKDPSVSVNR 423

Query: 378  VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 437
            V+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEIDAHVG VNDLAFS P KQ+ VITC
Sbjct: 424  VIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITC 483

Query: 438  GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 497
            GDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+
Sbjct: 484  GDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGS 543

Query: 498  RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 557
            RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + +  S+
Sbjct: 544  RVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR--SM 601

Query: 558  SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 617
             VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK+GTLLAV A
Sbjct: 602  GVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGTLLAVSA 661

Query: 618  NENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPISTVTG---------AGI 659
            N+N IKI         L T E+NS+  A   S+ + K ++N +S+            A  
Sbjct: 662  NDNGIKIVANADGIRLLRTLENNSMYDASRASE-MAKPTINSMSSAAAATSAALAERASS 720

Query: 660  ANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRL 716
                  +N D +   DVKP IS EA +KS++ K      PS C+SL LP  V+ NKISRL
Sbjct: 721  VAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRL 780

Query: 717  TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 776
             Y N G AI ALASN +HL+W+WPRN+   S +A   VP +L+QP  G   M ND  DSN
Sbjct: 781  IYTNSGNAILALASNAIHLLWKWPRNERNSSGKANASVPAQLWQPSSG-ILMTNDIADSN 839

Query: 777  SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
             +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IA
Sbjct: 840  PEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 899

Query: 837  IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 896
            IGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG DAQI VW+ DGW  
Sbjct: 900  IGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEK 959

Query: 897  QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSV 955
            Q  R LQ P G    A S+T +QFH+DQ +FL+VHET LAI+EA +L CLKQW P  SS 
Sbjct: 960  QKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSA 1019

Query: 956  PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC-LHVYPHAIAA 1014
            PIS ATFSCD ++++ SF+D T+ +  ASNL ++CRI   AYL  + S   +V P  IAA
Sbjct: 1020 PISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPPAYLPASVSSNSNVQPLVIAA 1079

Query: 1015 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
            HP +  QFAVGL++G V+V EP E    W V PP+E
Sbjct: 1080 HPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1160 bits (3002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1106 (54%), Positives = 756/1106 (68%), Gaps = 71/1106 (6%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FE+ KQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEVMKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD +KA+ IL KDLK FA  N+ELFKE+ QLLTL++ R++E LSKY  D  SAR  M
Sbjct: 85   LDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLTLENFRENEQLSKYC-DTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+   KL+FP++K  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  C-QLQETD--------FSGQSSESNALPPQTTQSP------------SSWNFSSSMLTDS 219
            C QL              G   ++   PP     P            + W  + + +   
Sbjct: 204  CGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQPSPAPVPTPLAGWMSNPTTVAHP 263

Query: 220  AVSFVALSLSDPTNKAV-----------TMDRPE-DSDILSEKS-PVRILNEQASTVTYP 266
             VS  A+ L  P+  A            ++D P  DSD +S+++ P+ + +E    V   
Sbjct: 264  EVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGDSDHVSKRTRPMGMSDEVNLPVNVL 323

Query: 267  GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 326
              +        P         Q+F      D PKT  +TL +G SSPMSMDFHPVQ TLL
Sbjct: 324  SATF-------PGHGHGHGHGQAFNAP--DDLPKTAMRTLNQG-SSPMSMDFHPVQQTLL 373

Query: 327  LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 386
            LVGTNVGD  LW+V S ++L +RNFKVWD+ ACSM F+ ALV+DPGVSV RV+WSPDG+L
Sbjct: 374  LVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVYRVIWSPDGAL 433

Query: 387  LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 446
             GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VNDLAFS P KQ+ VITCGDDKTIKVW
Sbjct: 434  FGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVW 493

Query: 447  DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL 506
            DA TG++ Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+RVDY+APG 
Sbjct: 494  DAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 553

Query: 507  GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 566
             CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA+KRTYQG   +  S+  V FDT K
Sbjct: 554  WCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGAVKRTYQG--FRKRSLGFVQFDTTK 611

Query: 567  DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 626
            ++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK+G LLAV A EN IKIL 
Sbjct: 612  NRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNKDGALLAVSAKENGIKILA 671

Query: 627  TPES--------NSVDAAGVLSDNLRKLSVNPISTVTGAGIAN----------GSVSVNE 668
              +         NS+      S+ + K ++NPIS    A  +           G  ++N 
Sbjct: 672  NADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAAAAAATSAALGERALSVVGINAMNG 731

Query: 669  DPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 725
            D +   DVKP IS E+ +KS++ K      PS+C+SL LP  V+ NKISRL Y N G AI
Sbjct: 732  DARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAI 791

Query: 726  FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 785
             ALASN +HL+W+W RND   + +A+  V P+L+QP  G   M ND TDSN+++AVPCFA
Sbjct: 792  LALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQPSSG-ILMTNDITDSNTEDAVPCFA 850

Query: 786  LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 845
            LSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P A  LAF+P DNN+IAIGMDDS+I 
Sbjct: 851  LSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAANFLAFHPQDNNIIAIGMDDSSIQ 910

Query: 846  IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP 905
            IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG DAQI VW+ DGW  Q  R LQ P
Sbjct: 911  IYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLP 970

Query: 906  DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSC 964
             G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  SS PIS ATFSC
Sbjct: 971  AGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSC 1030

Query: 965  DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1024
            D ++++ SF+D T+ +   SNL +QCRI  +AYL  + S  +V P  IAAHP +P QFAV
Sbjct: 1031 DSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSASVSS-NVQPLVIAAHPQEPNQFAV 1089

Query: 1025 GLTNGEVYVIEPNEPGDTWAVLPPDE 1050
            GL++G V+V EP E    W V PP E
Sbjct: 1090 GLSDGGVHVFEPLESEGKWGVPPPIE 1115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata]

 Score = 1159 bits (2999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/1102 (54%), Positives = 759/1102 (68%), Gaps = 81/1102 (7%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD  KA+ IL KDLK F+  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARAIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP+++  RLR LINQSLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHS 203

Query: 181  CQLQE---------TDFSGQSSESNALPP-------QTTQSP-----SSWNFSSSMLTDS 219
            C+L               G   ++   PP       Q T SP     + W  S S +   
Sbjct: 204  CRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHP 263

Query: 220  AVSFVALSL-------------SDPTNKAVTMDRPE-DSDILSEKS-PVRILNEQASTV- 263
            AVS  A++L             + PTN AV  D P  DSD +S+++ P+ I +E +  V 
Sbjct: 264  AVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPSGDSDHVSKRTRPMGISDEVSLGVN 321

Query: 264  ----TYPGVSLKN-----IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 314
                T+PG +  +     +PD                     D PKTVA+TL +GSS PM
Sbjct: 322  MLPMTFPGQAHGHNQTFKVPD---------------------DLPKTVARTLSQGSS-PM 359

Query: 315  SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374
            SMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV++P VS
Sbjct: 360  SMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVS 419

Query: 375  VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
            VNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND+AFS P KQ+ V
Sbjct: 420  VNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCV 479

Query: 435  ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494
             TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 480  TTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDN 539

Query: 495  LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
            +G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG     
Sbjct: 540  MGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQG--FHK 597

Query: 555  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
             S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT IDA GGL  +PRI FNK G+LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657

Query: 615  VIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE- 672
            V AN+N IK++   +    +     LS    K ++N I              +N D +  
Sbjct: 658  VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPVAERPASVVSIPGMNGDSRNM 717

Query: 673  -DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 730
             DVKP I+ E+ +KS+V K      PS+C+SL LP  ++A KISRL + N G AI ALAS
Sbjct: 718  VDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPENMRATKISRLIFTNSGNAILALAS 777

Query: 731  NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 790
            N +HL+W+W RND   + +AT  VPP+ +QP  G   M ND  ++N +EAVPCFALSKND
Sbjct: 778  NAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-ILMTNDVVETNPEEAVPCFALSKND 836

Query: 791  AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 850
            +Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAIGMDDSTI IYN R
Sbjct: 837  SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVR 896

Query: 851  SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 910
              EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW  Q  + LQ P G  T
Sbjct: 897  VDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRST 956

Query: 911  LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRM 968
             A S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+  SS PI+ ATFSCD ++
Sbjct: 957  SALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVRESSAPITHATFSCDSQL 1015

Query: 969  VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1028
            ++TSF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  IAAHP +   FAVGL++
Sbjct: 1016 IYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSD 1075

Query: 1029 GEVYVIEPNEPGDTWAVLPPDE 1050
            G V++ EP E    W V PP E
Sbjct: 1076 GGVHIFEPLESEGKWGVAPPPE 1097

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 1159 bits (2998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1107 (55%), Positives = 763/1107 (68%), Gaps = 88/1107 (7%)

Query: 1    MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
            +H+LE+ES F+F+MK+FED + +G W+DVE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct: 25   VHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query: 61   LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
            LD HD AKA+ IL KDLK F+  NEELFKE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct: 85   LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARSIM 143

Query: 121  MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
            ++ELK++IEANP+ + KL+FP++K        N SLNWQH  C NP+PNPDI TLFVDH 
Sbjct: 144  LVELKKLIEANPLFRDKLQFPNLK--------NSSLNWQHQLCKNPRPNPDIKTLFVDHT 195

Query: 181  C---------QLQETDFSGQSSESNALPP-------QTTQSP-----SSWNFSSSMLTDS 219
            C                 G   ++   PP       Q T +P     + W  +   +T  
Sbjct: 196  CGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHP 255

Query: 220  AVSFVALSLSDPTNKAVTMDRPE-------------DSDILSEKS-PVRILNEQASTVTY 265
            AVS  A+ L  P+  A  +  P              DSD LS+++ P+ I +E       
Sbjct: 256  AVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDE------- 308

Query: 266  PGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHT 324
                  N+P +  P S       Q+F  ++  D PKTV +TL +GSS PMSMDFHPVQ T
Sbjct: 309  -----INLPVNVLPVSFTGHSHSQAF--SAPEDLPKTVTRTLNQGSS-PMSMDFHPVQQT 360

Query: 325  LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 384
            LLLVGTNVGD GLW+V S ++L +RNFKVWD+GACSM  + ALV+DPGVSVNRV+WSPDG
Sbjct: 361  LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 420

Query: 385  SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 444
            SL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VND+AFS P KQ+ VITCGDDKTIK
Sbjct: 421  SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480

Query: 445  VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 504
            VWDA  G++ Y FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+LG+RVDY+AP
Sbjct: 481  VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 540

Query: 505  GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 564
            G  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG + +  S+ VV FDT
Sbjct: 541  GRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKR--SLGVVQFDT 598

Query: 565  AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624
             K++ LAAGDD  IK WDM+ VQLLT+IDA GGLP +PRI FNK+G LLAV  N+N IKI
Sbjct: 599  TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 658

Query: 625  LETPES--------NSVDAAGVLSDNLRKLSVNPIS-----TVTGAGIANGSVSVNEDPK 671
            L T +         N    A   S+N  K +++PIS       T AG+A+ + S+   P 
Sbjct: 659  LATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLADRAASMVSIPG 717

Query: 672  --------EDVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKISRLTYNNGG 722
                     DVKP I+ E+ +KS+V K    + P++C+SL LP  ++A KISRL + N G
Sbjct: 718  MNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 777

Query: 723  QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 782
             AI ALASN +HL+W+W R +   S +AT  V P+L+QP  G   M ND TDSN +EAVP
Sbjct: 778  NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG-IMMTNDVTDSNPEEAVP 836

Query: 783  CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 842
            CFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+IAIGMDDS
Sbjct: 837  CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS 896

Query: 843  TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 902
            +I IYN R  EV SKL+GHSKR+TGL FS ALN+LVSSG D+Q+ VW  DGW  Q  R L
Sbjct: 897  SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWGSDGWEKQKNRFL 956

Query: 903  QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQAT 961
            Q P G    A S+T +QFH+DQ  FL+VHET LAI+E  +L C+KQW P  SS PI+ AT
Sbjct: 957  QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 1016

Query: 962  FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1021
            FSCD ++V+  F+D T+ +  A+NL+++CRI  +AYL P     +V+P  IAAHP +P +
Sbjct: 1017 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL-PAGVSSNVHPLVIAAHPQEPNE 1075

Query: 1022 FAVGLTNGEVYVIEPNEPGDTWAVLPP 1048
            FA+GL++G V+V EP E    W V PP
Sbjct: 1076 FALGLSDGGVHVFEPLESEGKWGVPPP 1102

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1068
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.751	0.716	0.559	1e-306
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.808	0.763	0.537	9.4e-306
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.640	0.604	0.482	4.2e-261
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.328	0.474	0.361	4.5e-78
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.569	0.445	0.239	4.5e-17
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.235	0.527	0.242	3.3e-14
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.191	0.665	0.243	8e-14
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.191	0.567	0.247	1.1e-13
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.191	0.613	0.243	1.1e-13
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.191	0.613	0.243	1.4e-13

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2337 (827.7 bits), Expect = 1.0e-306, Sum P(2) = 1.0e-306
 Identities = 463/827 (55%), Positives = 589/827 (71%)

Query:   231 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 289
             P+N AV  D P  DSD +S+++    ++++ S     GV++  +P   P  +      Q+
Sbjct:   288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337

Query:   290 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 349
             F      D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  +
Sbjct:   338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394

Query:   350 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 409
              FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct:   395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454

Query:   410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 469
              LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct:   455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514

Query:   470 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529
             H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+G
Sbjct:   515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574

Query:   530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 589
             ESF+VEWNESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLL
Sbjct:   575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632

Query:   590 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 648
             T IDA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++
Sbjct:   633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692

Query:   649 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 705
             N I  V           +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP
Sbjct:   693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752

Query:   706 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 765
               ++  KISRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G 
Sbjct:   753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812

Query:   766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 825
               M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct:   813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871

Query:   826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 885
             AF+P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct:   872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931

Query:   886 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 945
             + VW+ DGW  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C
Sbjct:   932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991

Query:   946 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1003
             +KQW P+  S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S
Sbjct:   992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050

Query:  1004 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050
               +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct:  1051 NSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2335 (827.0 bits), Expect = 9.4e-306, Sum P(2) = 9.4e-306
 Identities = 481/895 (53%), Positives = 609/895 (68%)

Query:   199 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 253
             P Q T SP     + W  S S +   AVS  A++L  P+  A  +  P      +     
Sbjct:   238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296

Query:   254 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 310
                +E  S  T P G+S + N+  +  P S   +    S    +  D PKTVA+TL +GS
Sbjct:   297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356

Query:   311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 370
             S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV++
Sbjct:   357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415

Query:   371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 430
             P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct:   416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475

Query:   431 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
             Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct:   476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535

Query:   491 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 550
             LYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG 
Sbjct:   536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595

Query:   551 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 610
               +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +PRI FNK G
Sbjct:   596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653

Query:   611 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 664
             +LLAV  NEN IKI+   +    +     +S    K ++N I+       T AG A+ S 
Sbjct:   654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713

Query:   665 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 715
             +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  ++  KISR
Sbjct:   714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773

Query:   716 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 775
             L + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   M ND  ++
Sbjct:   774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832

Query:   776 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 835
             N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct:   833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892

Query:   836 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 895
             AIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW 
Sbjct:   893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952

Query:   896 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 955
              Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW    S+
Sbjct:   953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012

Query:   956 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1014
              PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  IAA
Sbjct:  1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAA 1072

Query:  1015 HPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDRAMD 1067
             HP +P  FAVGL++G V++ EP E    W V PP E       PT+ S G  A D
Sbjct:  1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASD 1127

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1648 (585.2 bits), Expect = 4.2e-261, Sum P(2) = 4.2e-261
 Identities = 344/713 (48%), Positives = 464/713 (65%)

Query:     1 MHRLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEA 60
             +H+LE+ES F+F++K+FE+  L G+W++VE+YLS FTKVDDNRYS KI+FEIRKQ + EA
Sbjct:    25 VHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84

Query:    61 LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNM 120
             LD +D AKA+ IL KDLK FA  NEEL+KE+ QLLTL++ R++E LSKY GD  SAR  M
Sbjct:    85 LDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKY-GDTKSARSIM 143

Query:   121 MLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHV 180
               ELK++IEANP+ + KL FPS K  RLR LINQSLNWQH  C NP+PNPDI TLF+DH 
Sbjct:   144 YTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHS 203

Query:   181 CQ-------LQETDF--SGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL---SL 228
             C        L   +   +  +  SN +P      P   N + +   ++   ++A    S 
Sbjct:   204 CSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQSNPAPAPNANALAGWMANPNPSS 263

Query:   229 SDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMF- 287
             S P+        P     ++E    R  +     + Y     + +      +    E+  
Sbjct:   264 SVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTY 323

Query:   288 --QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK 345
                S    S  D P+ V  T+ +GS   +SMDFHP  HTLL VG + G+  LW+V S +K
Sbjct:   324 PAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREK 382

Query:   346 LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 405
             +    FK+W++ ACS++F+ ++V++P +SV RV WSPDG+LLGV+++KH++ +YAY G S
Sbjct:   383 VVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQG-S 441

Query:   406 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 465
             D RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK IKVWD ++G + ++FEGH APVY
Sbjct:   442 DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVY 500

Query:   466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 525
             S+CPH KENI FIFS ++DGKIKAWLYD++G+RVDYDAPG  CT M YSA+G RLFSCGT
Sbjct:   501 SICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGT 560

Query:   526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 585
             SKEG+SFLVEWNESEGA+KRTY G + +  S  VV FDT +++ LA G+D+ IK W+M+ 
Sbjct:   561 SKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVVQFDTTRNRFLAVGEDNQIKFWNMDN 618

Query:   586 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLR 644
               LLT ++A GGLP  PR+ FNK+G LLAV   +N  KIL   +   ++ A    S    
Sbjct:   619 TNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEAS 678

Query:   645 KLSVN-PISTVTGAGIANGSVSVNE--DPKEDVKPEI---SVEAENKSEVEKP 691
             K S++  +ST   A   + ++   E  D     +P      +EA +++ +EKP
Sbjct:   679 KASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGIEAMSRT-MEKP 730

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 4.5e-78, Sum P(2) = 4.5e-78
 Identities = 132/365 (36%), Positives = 198/365 (54%)

Query:   696 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 755
             PS+C +L+LP      KI+RLTY+  G  I ALA +  H +W W  +      E      
Sbjct:   375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433

Query:   756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 815
             PRL+QP+ G + M N+   S  Q++  CFA+    +YLFS SGG I+++ +  F+ + + 
Sbjct:   434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489

Query:   816 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 875
               P+P AT   F P D  ++A+G+DD +I I+   S +V  KLEGH +++T L FS   N
Sbjct:   490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547

Query:   876 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 932
             +LVSS  D ++ +W    W   T + S +       L  +   THIQF   Q   L+VH+
Sbjct:   548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607

Query:   933 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 991
               + +YE   L C  QW P +S P I+ AT+S D  +++  F  G++ I ++      C+
Sbjct:   608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667

Query:   992 ILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1049
             I  T++ + +TS   L VYP  +AAHP  P Q + GL+NG+V V++P   G  W    P 
Sbjct:   668 INLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-WGEAAPL 726

Query:  1050 EIVGD 1054
             E  GD
Sbjct:   727 EDNGD 731

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 168/701 (23%), Positives = 298/701 (42%)

Query:   276 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 333
             +SP+ S+ + +F ++  + +S  PK V QT    S+   +++ H  PV+  +        
Sbjct:   711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765

Query:   334 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 393
              +G +D            K+WD  A   L +T L    G +V  + +SPDG LL      
Sbjct:   766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813

Query:   394 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 453
             + + L+    G +  Q  E   H  ++  +AF+   K+++  +  DD TIK+WD  TG  
Sbjct:   814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868

Query:   454 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 510
               + + H   V S+   P  K     + S S+D  IK W  +     +     G  G  +
Sbjct:   869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922

Query:   511 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 569
              +A+S +G++L S G+ K        WN + G + +T +G      SV  V F     Q+
Sbjct:   923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975

Query:   570 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 627
              ++  D  IK+W+    +L  T   G  L     + F+ +G  L   +++N IK+  L T
Sbjct:   976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033

Query:   628 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK--- 675
              E        S SV A     D+ +  S +  ST+     A G +    E   + V+   
Sbjct:  1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093

Query:   676 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 731
               P+  + A N  +    L+  P   E Q  L     +++ +  + ++  G+ + +   +
Sbjct:  1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149

Query:   732 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 784
                 +W     +L  + E  + ++   ++ P       G         D  + E +  F 
Sbjct:  1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209

Query:   785 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 834
                      A S +   L S+S G  I L+  +T + + T+  P  +A S+AF+P  N +
Sbjct:  1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269

Query:   835 IAIGMDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDV 891
              ++ + D+ I  ++  + E++  L+GHSK V   TG   S  L+  +    + +I +W  
Sbjct:  1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLP 1325

Query:   892 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 932
               +    C S+   DGV+ L  S   + F +   RFL+  E
Sbjct:  1326 QSYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 64/264 (24%), Positives = 108/264 (40%)

Query:   403 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 462
             G  D   +     H   +    FS  CKQI+  T   D  + +W     +R Y + GH  
Sbjct:     4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61

Query:   463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522
              V SL    + N+  + S S D  ++ W+ D  G   ++ A       + +SA+G+ L  
Sbjct:    62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118

Query:   523 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 582
               T+ E +S  V W+      +R    L    + V    F      I++  +D  IKIWD
Sbjct:   119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172

Query:   583 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 642
                 Q +       G      + FN NGT +A   +++ +KI +   +  +    V S  
Sbjct:   173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230

Query:   643 LRKLSVNPISTVTGAGIANGSVSV 666
             +  LS +P+        ++G+V +
Sbjct:   231 VNCLSFHPLGNSLVTASSDGTVKM 254

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76

Query:   434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:    77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133

Query:   494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187

Query:   554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 54/218 (24%), Positives = 104/218 (47%)

Query:   374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+  + + 
Sbjct:    74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129

Query:   434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
              ++  DDKT+KVW+  TG    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186

Query:   494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240

Query:   554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102

Query:   434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query:   494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213

Query:   554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102

Query:   434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query:   494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213

Query:   554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.5415	0.9625	0.9178	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XVIII1717 hypothetical protein (1109 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1068
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	8e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (281), Expect = 4e-27
 Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)

Query: 307 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 365
           ++G +     + F P    L         TG  D            KVWD+   +     
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45

Query: 366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 425
            L       V  V  S DG+ L    S   ++L+    G   R    +  H   V+ +AF
Sbjct: 46  TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101

Query: 426 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 485
           S P  +I + +   DKTIKVWD  TG    +  GH   V S+      +  F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157

Query: 486 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 543
            IK W  D    +      G       +A+S +G +L S  +   G   L  W+ S G  
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211

Query: 544 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 602
             T +G    H N V+ V F      + +  +D  I++WD+   + + T+        N 
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263

Query: 603 --RICFNKNGTLLAVIANENRIKI 624
              + ++ +G  LA  + +  I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)

Query: 267 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 326
           G SL ++   S  SS    +  +    S    P   +  L     S  S+ F P    LL
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80

Query: 327 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 385
           L G++ G   LWD+++G+KL                   +L      SV+++   SPDG+
Sbjct: 81  LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123

Query: 386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 445
            + +A S     +  +   +  +    ++ H  +V  LAFS P  ++       D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182

Query: 446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 505
           WD  TG    +  GH  PV SL       +    S S DG I+ W   +        +  
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 506 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 565
                 ++S +G  L S  +      + +  + S          L    +SV  V F   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295

Query: 566 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 624
              + +   D  +++WD+   +LL+++   G       + F+ +G+LL    +++  I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 625 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 679
            +      +      S N+  +S +P   V  +G  +G+V + +     +   + 
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)

Query: 781 VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 839
           V C A S +   L + SG G I ++ + T + + T+   +     +A +  D   +A G 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 899
            D TI +++  + E +  L GH+  V+ + FS    IL SS  D  I VWDV+     T 
Sbjct: 71  SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125

Query: 900 RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 951
           + L T     D V ++A S     F     +D T    +      +++     C+     
Sbjct: 126 KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174

Query: 952 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
             +  ++   FS D   + +S  DGT+ + + S
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 778 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
              V   A S +   L S+S    I ++ V T K + T+   +    S+AF+P D   +A
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151

Query: 837 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 895
               D TI +++ R+ + ++ L GH+  V  + FS     L+SS  D  I +WD+  G  
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 896 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 952
           + T R     +GV ++A S            +LL     +  + +++     C++     
Sbjct: 212 LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259

Query: 953 SSVPISQATFSCDCRMVFTSFVDGTLSI 980
            +  ++   +S D + + +   DGT+ I
Sbjct: 260 HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 10 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 68
           + + K   ++IL G W++  ++LSS       R S K+ FE+RKQ F E +    + +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 778 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
              V   A S +   L S+S  G I L+ + T K + T+        S+AF+P    + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 837 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
            G +D TI +++ R+ E +  L GH+  VT L +S     L S   D  I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)

Query: 408 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 465
              L +  H  ++  +AFS P  ++ +++   D TIK+WD   G +        H + V 
Sbjct: 56  LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113

Query: 466 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 523
            L   + +    + + S +DG +K W L          +      T +A+S +G+ L S 
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 582
            +       +  W+   G    T  G     + VS + F       I +   D  I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 583 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 641
           ++  +LL +  +G    ++    F+ +G+LLA  +++  I++ +   S+S+       S 
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 642 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 701
           ++  ++ +P   +  +G ++G+V + +     +   ++++                    
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328

Query: 702 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 760
                      +S L+++ +G   +   + +G   +W         + E           
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368

Query: 761 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 819
                               V   + S +   + S S  G + L+ + T   +  +   +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 820 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 858
              TSL F+P D   +A G  D+TI +++ ++S      
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 2e-10
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 787  SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 845
              +     S+  G + L+ + T  K I T+   S + TSLAF+P    + +    D TI 
Sbjct: 122  GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 846  IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 903
            +++ R+ + +S L GH+  V+ L FS D   ++ S   D  I +WD+     +++  S  
Sbjct: 182  LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 904  TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 962
            +   V +         F  D +          + +++    + L +     S  +    F
Sbjct: 242  SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 963  SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1004
            S D +++ +   DGT+ + +    ++   +    +  P +S 
Sbjct: 293  SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 781 VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 838
           V   A S +   L ++    G I L+ + T K + + +     +   +F+P D +++A G
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259

Query: 839 MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 897
             D TI +++ RS S ++  L GHS  V  + FS    +L S   D  + +WD++   + 
Sbjct: 260 SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 957
           +  +L+  +G        + + F  D +  +        I   +  T            +
Sbjct: 320 SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Query: 958 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 995
              +FS D R+V +   DGT+ + + S   +   +   
Sbjct: 374 LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)

Query: 432 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 491
           I ++    D  + + D      +    GH   + S+      +   + S S DG IK W 
Sbjct: 40  ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93

Query: 492 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548
            D+    +           +++A  S +G  +    +S +G   +  W+ S         
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150

Query: 549 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 607
            L+    SV+ + F      + +    D  IK+WD+   + L+T+        +  + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207

Query: 608 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 664
            +G LL    + +  I++  L T +      +G     +   S +     +G+  ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265

Query: 665 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 724
            +                                         ++++     T +    +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286

Query: 725 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 784
           + ++A +    +        + S++ T ++    +    G        T    +  V   
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334

Query: 785 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 842
           + S + + L S     G I L+ + T K + T+   S    S++F+P D  V++ G  D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392

Query: 843 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 894
           T+ +++  +  ++  L+GH+ RVT L FS     L S   D  I +WD+   
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)

Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 363
           +TL   SSS +S+ F P    LL  G++ G   LWD+ +G+ L     K           
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325

Query: 364 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 422
                      V+ + +SPDGSLL    S    ++L+         + L+      NV  
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375

Query: 423 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 482
           ++FS   + +S  +   D T+++WD  TGS   + +GH + V SL          + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431

Query: 483 VDGKIKAWLYDSLGARVDYDAPG 505
            D  I+ W   +    V +   G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 566
           G T +A+S +G+ L +          +  W+   G + RT +G       V  V      
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63

Query: 567 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 625
             + +   D  I++WD+   + + T+    G       + F+ +G +L+  + +  IK+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 666
           +      +      +D +  ++ +P  T   +   +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 858 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 917
           L+GH+  VT + FS    +L +  GD  I VWD++   +       T   V         
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56

Query: 918 IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 972
           +    D T            +++ E   C++        +SSV      FS D R++ +S
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111

Query: 973 FVDGTLSIHE 982
             D T+ + +
Sbjct: 112 SRDKTIKVWD 121

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)

Query: 297 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 351
           D       T + G +    S+ F P   T +   +  G   LWD+ +G+   +       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177

Query: 352 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 387
                                   K+WD+   S       +R     VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447
                   ++++    G        +  H  +V  LA+S   K+  + +   D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 851 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
           S E++  L+GH+  VT + FS     L S   D  I +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
           +++  L+GH+  VT + FS   N+L S   D  + VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 408 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447
           +    +  H G V  +AFS     +   +  DD T++VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 825 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 876
           +AFNP D   +    +D TI+ +           S+ I  L+GH+K+V  + F   A+N+
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 877 LVSSGGDAQIFVWDVD 892
           L S+G D  + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 447
            +  H G V  +AFS   K +   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1068
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1963	792	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
COG4946	668	Uncharacterized protein related to the periplasmic	99.68
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.63
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.62
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG1334	559	consensus WD40 repeat protein [General function pr	99.61
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.6
COG4946	668	Uncharacterized protein related to the periplasmic	99.6
KOG2139	445	consensus WD40 repeat protein [General function pr	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG1310	758	consensus WD40 repeat protein [General function pr	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.56
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.55
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG2315	566	consensus Predicted translation initiation factor	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.5
KOG2315	566	consensus Predicted translation initiation factor	99.49
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.49
PRK05137	435	tolB translocation protein TolB; Provisional	99.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.46
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
KOG2314	698	consensus Translation initiation factor 3, subunit	99.44
KOG2321	703	consensus WD40 repeat protein [General function pr	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
PRK00178	430	tolB translocation protein TolB; Provisional	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.37
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.35
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
KOG2314	698	consensus Translation initiation factor 3, subunit	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.19
KOG4547	541	consensus WD40 repeat-containing protein [General	99.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.07
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.04
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.95
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.94
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.93
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.91
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.9
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.89
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.8
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.75
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.74
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.74
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.73
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.73
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.72
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.72
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.7
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.62
PRK02888	635	nitrous-oxide reductase; Validated	98.61
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.61
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.6
PRK02888	635	nitrous-oxide reductase; Validated	98.57
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.56
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.56
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.56
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.53
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.52
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.51
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.46
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.46
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.46
KOG2695	425	consensus WD40 repeat protein [General function pr	98.44
KOG3621	726	consensus WD40 repeat-containing protein [General	98.44
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.42
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.39
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.38
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.38
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.2
KOG2695	425	consensus WD40 repeat protein [General function pr	98.19
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.13
PRK13616	591	lipoprotein LpqB; Provisional	98.12
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.11
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.1
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.08
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.06
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.05
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.04
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.02
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.97
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.95
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.93
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.88
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	97.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.84
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.83
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.82
KOG3621	726	consensus WD40 repeat-containing protein [General	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.82
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.82
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.81
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.78
PRK13616	591	lipoprotein LpqB; Provisional	97.73
COG3391	381	Uncharacterized conserved protein [Function unknow	97.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.57
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.51
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.44
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.42
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.38
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.36
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.29
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.22
PRK10115	686	protease 2; Provisional	97.22
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.18
PRK10115	686	protease 2; Provisional	97.18
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.04
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.99
KOG2395	644	consensus Protein involved in vacuole import and d	96.98
KOG0396	389	consensus Uncharacterized conserved protein [Funct	96.96
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.94
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.89
PHA02713	557	hypothetical protein; Provisional	96.87
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.85
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.81
PRK13684	334	Ycf48-like protein; Provisional	96.76
KOG2395	644	consensus Protein involved in vacuole import and d	96.76
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.71
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.48
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.47
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.45
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.42
PHA02713	557	hypothetical protein; Provisional	96.3
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.22
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.19
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.18
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.12
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.06
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.06
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.93
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.78
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.71
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.61
PRK13684	334	Ycf48-like protein; Provisional	95.5
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.43
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.39
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.39
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.18
KOG2444	238	consensus WD40 repeat protein [General function pr	95.15
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.85
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.81
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.59
PHA03098	534	kelch-like protein; Provisional	94.57
PHA03098	534	kelch-like protein; Provisional	94.48
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.28
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.26
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.18
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.14
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.11
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.05
KOG2444	238	consensus WD40 repeat protein [General function pr	94.03
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	93.99
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.89
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.89
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.86
PHA02790	480	Kelch-like protein; Provisional	93.85
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.85
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.65
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.61
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.53
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.51
COG5276	370	Uncharacterized conserved protein [Function unknow	93.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.33
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.15
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.08
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.07
COG4590	733	ABC-type uncharacterized transport system, permeas	92.98
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.96
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.81
PHA02790	480	Kelch-like protein; Provisional	92.09
COG3292	671	Predicted periplasmic ligand-binding sensor domain	91.95
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.91
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.78
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.72
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.64
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.62
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.45
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.23
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.09
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.95
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.83
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.69
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.41
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.93
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	89.74
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.61
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.53
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	89.46
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.36
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.35
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.23
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.84
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	88.68
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.56
COG5167	776	VID27 Protein involved in vacuole import and degra	88.49
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.89
PLN02193	470	nitrile-specifier protein	87.62
PLN02193	470	nitrile-specifier protein	87.52
KOG2247	615	consensus WD40 repeat-containing protein [General	87.4
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.39
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.2
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.94
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	86.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.61
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.56
PRK13613	599	lipoprotein LpqB; Provisional	86.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.37
PRK13614	573	lipoprotein LpqB; Provisional	86.28
COG5276	370	Uncharacterized conserved protein [Function unknow	85.68
PRK13615	557	lipoprotein LpqB; Provisional	85.6
PLN02153	341	epithiospecifier protein	85.38
PLN02153	341	epithiospecifier protein	85.33
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.16
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.93
PRK13614	573	lipoprotein LpqB; Provisional	84.69
COG4590	733	ABC-type uncharacterized transport system, permeas	84.62
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.24
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.91
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.58

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.9e-72  Score=549.15  Aligned_cols=472  Identities=21%  Similarity=0.297  Sum_probs=401.5

Q ss_pred             CccccccCcccc---HHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhhcc
Q 001490            2 HRLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK   78 (1068)
Q Consensus         2 ~~le~esg~~~~---~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~l~   78 (1068)
                      .+||.|||+.++   ++.|.++||+|+|+.++..+..+...++...+ ++.||+.||+|||+|..|....|+.+||++..
T Consensus        38 ~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~-ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~  116 (519)
T KOG0293|consen   38 PLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRK-EAMFLVNKQIFLEFLKTGSISHALPVLRNPVL  116 (519)
T ss_pred             hhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhH-HHHHHHHHHHHHHHHhhccHhhhhHhhhcchh
Confidence            469999999984   99999999999999999999988766666544 48999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHhhhcccCccChhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcchhHHHHHHHhhccc
Q 001490           79 DFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNW  158 (1068)
Q Consensus        79 p~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~  158 (1068)
                      +| .++.+++|+|+.-|..++...+.+... .......|.+|+++|+++|||++|         ||++||++||+||+.|
T Consensus       117 ~l-r~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---------lP~rRLehLl~qAv~~  185 (519)
T KOG0293|consen  117 YL-RKNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---------LPKRRLEHLLEQAVKY  185 (519)
T ss_pred             hh-hhhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc---------CChHHHHHHHHHHHHH
Confidence            99 679999999998777765332222221 123367899999999999999999         9999999999999999


Q ss_pred             chhcccCCCCCCCCCcceeecccCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCcccccccccccccCCCCCCccccc
Q 001490          159 QHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTM  238 (1068)
Q Consensus       159 Q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  238 (1068)
                      |+++|+||| +.+..|||.||.|++      .|+      |+++.|                                  
T Consensus       186 Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------p~qt~q----------------------------------  218 (519)
T KOG0293|consen  186 QRDSCVYHN-SLDSVSLLSDHFCGR------LQI------PSQTWQ----------------------------------  218 (519)
T ss_pred             HHhHhHHhc-ccchhhhhhhcccCc------ccC------Cchhhh----------------------------------
Confidence            999999999 777789999999998      663      666654                                  


Q ss_pred             cCCCCCCCCcCCccccccCCCCceeeecCccCCCCCccCCCCccccccccccCCCccCCCccceeeecccCCCCceEEEE
Q 001490          239 DRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDF  318 (1068)
Q Consensus       239 ~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~  318 (1068)
                                                                                        +|..|+++||.+.|
T Consensus       219 ------------------------------------------------------------------il~~htdEVWfl~F  232 (519)
T KOG0293|consen  219 ------------------------------------------------------------------ILQDHTDEVWFLQF  232 (519)
T ss_pred             ------------------------------------------------------------------hHhhCCCcEEEEEE
Confidence                                                                              46889999999999


Q ss_pred             cCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEE
Q 001490          319 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL  398 (1068)
Q Consensus       319 spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~v  398 (1068)
                      |++|+ +||+++.|.+..||++.....+.-                ...+.+|..+|..+.||||.+||++|+.+..+.+
T Consensus       233 S~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  233 SHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             cCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            99998 679999999999999865444221                1128899999999999999999999999999999


Q ss_pred             EEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-CcEEEEeeeecCCccE
Q 001490          399 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHF  477 (1068)
Q Consensus       399 wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~  477 (1068)
                      ||+.+|.......  .+|...+.+++|.|||.  .+++|+.|++|..||+. |..+..+++-. ..|.++++.+  ||++
T Consensus       296 wDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~--Dgk~  368 (519)
T KOG0293|consen  296 WDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITY--DGKY  368 (519)
T ss_pred             ccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcC--CCcE
Confidence            9999998765332  24668999999999999  79999999999999964 55566665543 5688888855  8899


Q ss_pred             EEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCe
Q 001490          478 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV  557 (1068)
Q Consensus       478 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v  557 (1068)
                      +++.+.|..|++++..+..... +.....+|++++.|.|++++++.-.    +..+.+||++....++++.||.+....|
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LWDl~e~~lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLWDLEENKLVRKYFGHKQGHFII  443 (519)
T ss_pred             EEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEeecchhhHHHHhhcccccceEE
Confidence            9999999999999988766554 3344568999999999999988765    4459999999999999999999666667


Q ss_pred             EEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEECCC
Q 001490          558 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPE  629 (1068)
Q Consensus       558 ~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~  629 (1068)
                      .++.-..+..++++||+|+.|+||+..+|+++..+.+|..  .|++|+|+| +..++|++++||+|+||-...
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            7766666778999999999999999999999999998865  599999999 677899999999999998663

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-59  Score=494.44  Aligned_cols=577  Identities=18%  Similarity=0.256  Sum_probs=493.1

Q ss_pred             EEEcCCCCeEEEEEcCcCcEEEEecCCCcce-eeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCc
Q 001490          316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  394 (1068)
Q Consensus       316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~  394 (1068)
                      ++||++|+ +|+|... ..|.+-|+.+++.. ...                  -......+++++.+||+++|++++...
T Consensus        25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence            89999998 5677654 56999999999873 211                  223557899999999999999999999


Q ss_pred             EEEEEEccCCCcccceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecC
Q 001490          395 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  473 (1068)
Q Consensus       395 ~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~  473 (1068)
                      .+++|++.+++.++   .++. |++||.-++|+|.|.  ++++|+.|+.+++||+..+.+.+.|+||.+.|.++.|+|..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998877   4455 999999999999997  99999999999999999999999999999999999999998


Q ss_pred             CccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001490          474 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  552 (1068)
Q Consensus       474 ~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~  552 (1068)
                      +-..|++|..|+++++||+..... ...+..|...+++++|++|+..+++++.    |..+.+||+.+-+..+++...+ 
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-  234 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-  234 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence            888999999999999999996554 6788889999999999999999999987    6689999998877777766544 


Q ss_pred             ccCCeEEEEEecC-----CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          553 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       553 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                         .+.++.+-++     +.+++++|++|.+++||.++++.+....... .+.+..+...+....++..+.|..+.++|.
T Consensus       235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence               6777888777     7799999999999999999998876655443 233666666666667777788899999999


Q ss_pred             CCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCc
Q 001490          628 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  707 (1068)
Q Consensus       628 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  707 (1068)
                      ++.+....+-|..+.|..+.|-                     .|+.+.++.++..+.+|+++..+   ..|.  .+  .
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~~---~~c~--ii--~  362 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLPT---SYCQ--II--P  362 (775)
T ss_pred             cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecCC---CceE--EE--e
Confidence            9999999999999999888886                     57788999999999999996553   2333  22  4


Q ss_pred             cccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001490          708 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  787 (1068)
Q Consensus       708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  787 (1068)
                      +|...|.++....+|.+|++++.|..+++|.++.+....                    ...  -...+|...|.+++++
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~--------------------~~~--a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS--------------------LCV--AQANGHTNSVGAVAGS  420 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh--------------------hhh--hhhcccccccceeeec
Confidence            599999999988889999999999999999884321100                    000  1112599999999998


Q ss_pred             cCC-CEEEEEe-CCeEEEEEccCcee-----E----EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeee
Q 001490          788 KND-AYLFSAS-GGVISLYIVMTFKT-----I----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  856 (1068)
Q Consensus       788 ~dg-~~l~~~~-dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  856 (1068)
                      ..+ .++++++ |.++++|++...+.     .    .+...|...|+|++++| +.+++|||+.|++.+||+++.+....
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence            766 5777777 89999999975221     1    12346899999999999 89999999999999999999999999


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeE
Q 001490          857 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  935 (1068)
Q Consensus       857 ~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i  935 (1068)
                      ++.||...|+++.|+|..+.++|+|.|++|+||.+++     ..++++++||..   .|..+.|-.+|+.|++ +.||-+
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence            9999999999999999999999999999999999998     458999999987   8999999999999998 799999


Q ss_pred             EEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001490          936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL  986 (1068)
Q Consensus       936 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~  986 (1068)
                      ++|++.+++|... +..|..+|++++.++++.+++||+.||.|.+|.=.+.
T Consensus       572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            9999999999998 7899999999999999999999999999999965543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-55  Score=467.38  Aligned_cols=550  Identities=14%  Similarity=0.209  Sum_probs=461.1

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecC-CCcceEEEEECCCCCE
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~spdg~~  386 (1068)
                      +-.+.+++++.+||++ +|++++....+++|++.+|+.++.                   +.. |+++|.-++|+|.|..
T Consensus        60 ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~L  119 (775)
T KOG0319|consen   60 EDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTL  119 (775)
T ss_pred             cchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCce
Confidence            4567899999999998 678888989999999999988765                   334 9999999999999999


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEE
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY  465 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~  465 (1068)
                      ||+|+.|+.++|||+..+.+..   .|.||.+.|.++.|.|+-.+.+|++|+.|+++++||+.+... +..+..|...|+
T Consensus       120 lAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vt  196 (775)
T KOG0319|consen  120 LATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVT  196 (775)
T ss_pred             EEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhhee
Confidence            9999999999999999987665   789999999999999998766899999999999999996554 888899999999


Q ss_pred             EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC-----CCEEEEEeeCCCCceeEEEEeCCC
Q 001490          466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESE  540 (1068)
Q Consensus       466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~~wd~~~  540 (1068)
                      +++|.+  |+..+++++.|..+.+||+..-+........ ..+.++.+-++     |.++++.+.    ++.+++||.++
T Consensus       197 sL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es  269 (775)
T KOG0319|consen  197 SLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSES  269 (775)
T ss_pred             eeeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhcCCcceEEEEecC----CceEEEEeccc
Confidence            999976  6789999999999999999655544444332 25566666666     668888875    67899999999


Q ss_pred             CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE-ecCCCEEEEEECC
Q 001490          541 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANE  619 (1068)
Q Consensus       541 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~d  619 (1068)
                      ++++.+.....  ...+..+...+....++....|..+.++|.++.+....+.+..  ..|..++| .|+.++|++++..
T Consensus       270 ~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs  345 (775)
T KOG0319|consen  270 GKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNS  345 (775)
T ss_pred             chhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCC
Confidence            98876665543  2336666666777788888889999999999999998887553  45888876 4678999999999


Q ss_pred             CeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCccc
Q 001490          620 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  699 (1068)
Q Consensus       620 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  699 (1068)
                      +.+++|+..+..+. .+.+|.+.|.++...                      ..|-++++++.|+++++|.++....  .
T Consensus       346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~----------------------~~g~llat~sKD~svilWr~~~~~~--~  400 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVW----------------------SSGDLLATGSKDKSVILWRLNNNCS--K  400 (775)
T ss_pred             CceEEEecCCCceE-EEeCchhheeeeeec----------------------ccCcEEEEecCCceEEEEEecCCcc--h
Confidence            99999998887666 889999999888743                      4567899999999999998832211  1


Q ss_pred             ceeecCCccccccEEEEEEecCC-ceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCC
Q 001490          700 QSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  778 (1068)
Q Consensus       700 ~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (1068)
                      ....-...+|.+.|.+++++..+ ..+++++.|+++++|+++..+....        +         ...........|.
T Consensus       401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~---------~~~~~~~t~~aHd  463 (775)
T KOG0319|consen  401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------P---------IVLTCRYTERAHD  463 (775)
T ss_pred             hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------c---------ceehhhHHHHhhc
Confidence            11112235799999999997765 4578888999999999876221100        0         0122222334599


Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee
Q 001490          779 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  857 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  857 (1068)
                      ..|+|++++|+.+++|+|+ |.+.+||+++......++.+|...+.|+.|+| ..+.+|+++.|++|+||.+.+..++++
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT  542 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKT  542 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeee
Confidence            9999999999999999999 89999999999999999999999999999999 889999999999999999999999999


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEE
Q 001490          858 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA  936 (1068)
Q Consensus       858 ~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~  936 (1068)
                      |.||+..|..+.|-.+|+.|+|++.||.|++|++++++     |...+..|..   .|.+++.+|.+.++++ +.|+.|.
T Consensus       543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRII  614 (775)
T ss_pred             ecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEE
Confidence            99999999999999999999999999999999999966     7888888887   9999999999999998 7899999


Q ss_pred             EEECCC
Q 001490          937 IYEAEE  942 (1068)
Q Consensus       937 vwd~~~  942 (1068)
                      +|.=.+
T Consensus       615 ~wkD~T  620 (775)
T KOG0319|consen  615 FWKDVT  620 (775)
T ss_pred             EeecCc
Confidence            996443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.7e-53  Score=429.02  Aligned_cols=576  Identities=15%  Similarity=0.189  Sum_probs=463.7

Q ss_pred             eEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC
Q 001490          314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  393 (1068)
Q Consensus       314 ~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d  393 (1068)
                      .-+.-.|.|..++.+.+  ..|.+-++++......                   +.+|...++-..|||.|-|+|+|...
T Consensus        22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s   80 (603)
T KOG0318|consen   22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS   80 (603)
T ss_pred             eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence            34556788888888765  6788989887765533                   78899999999999999999999999


Q ss_pred             cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEE-eCCCcEEEEECCCCceeeEeccCCCcEEEEeeeec
Q 001490          394 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK  472 (1068)
Q Consensus       394 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~  472 (1068)
                      |+|+|||....+.+.+ .+++.-.++|..++|+.|+++ ++++| +.++..+++-.++|..+..+.||...|+++.|-|+
T Consensus        81 G~vRIWdtt~~~hiLK-nef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps  158 (603)
T KOG0318|consen   81 GKVRIWDTTQKEHILK-NEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS  158 (603)
T ss_pred             CcEEEEeccCcceeee-eeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence            9999999977443322 256678899999999999995 33333 33434444444588889999999999999999876


Q ss_pred             CCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc
Q 001490          473 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  552 (1068)
Q Consensus       473 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~  552 (1068)
                      .. -.++++++|++|.+|+-...+-...+..|..-|.++.|+|||.++++.+.    |+.+++||-.+|+.+..+.....
T Consensus       159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~a  233 (603)
T KOG0318|consen  159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDA  233 (603)
T ss_pred             Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCC
Confidence            33 57999999999999988887888888899999999999999999999987    66799999999999999996555


Q ss_pred             ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCC-CceEEEecCCCEEEEEECCCeEEEEECCCCc
Q 001490          553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPESN  631 (1068)
Q Consensus       553 ~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  631 (1068)
                      |.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++........ ...+.|-  +..|++.+.+|.|.+++.....
T Consensus       234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~  311 (603)
T KOG0318|consen  234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS  311 (603)
T ss_pred             ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence            669999999999999999999999999999999999999986654221 2233343  6689999999999999999999


Q ss_pred             eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccc
Q 001490          632 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  711 (1068)
Q Consensus       632 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  711 (1068)
                      .+..+.+|...|++++.+                      ++++++.+++.||.|.-|+...+....     +....|..
T Consensus       312 ~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~n  364 (603)
T KOG0318|consen  312 VLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTN  364 (603)
T ss_pred             hhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----cccccccc
Confidence            999999999999999996                      788999999999999999987654433     23345899


Q ss_pred             cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490          712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  791 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  791 (1068)
                      .|.+++.+..+. +++++.|.++++.++..+......                  .  .+     -.....+++..+|+.
T Consensus       365 qI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~~  418 (603)
T KOG0318|consen  365 QIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDGG  418 (603)
T ss_pred             eEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCCC
Confidence            999999988776 788888889988776443221100                  0  01     123344899999998


Q ss_pred             EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee--eeeecccccCeEEEE
Q 001490          792 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLV  869 (1068)
Q Consensus       792 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~  869 (1068)
                      +++.+.++.|.+..-.++  +..+. ..-...++|++| ++..+|+|+.||.|+||.+..++.  ...+..|.++|++++
T Consensus       419 ~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va  494 (603)
T KOG0318|consen  419 TAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA  494 (603)
T ss_pred             EEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence            888888766666542222  11222 334678999999 999999999999999999987653  345567999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeee
Q 001490          870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ  948 (1068)
Q Consensus       870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~  948 (1068)
                      ||||+.+||++...+.+.+||+.+.+...    ....-|.   ..|.+++|||+.+++|+ +-|..|.||+++.......
T Consensus       495 ySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~  567 (603)
T KOG0318|consen  495 YSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII  567 (603)
T ss_pred             ECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence            99999999999999999999999876422    1112233   37999999999999999 6899999999998776666


Q ss_pred             eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490          949 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       949 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~  984 (1068)
                      ....|...|+.+.|..+. .|++.+.|..|++|++.
T Consensus       568 iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  568 IKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eccccccCceeEEEecCc-eEEeccCcceeEEeccc
Confidence            678898889999998654 68889999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-50  Score=412.37  Aligned_cols=542  Identities=12%  Similarity=0.196  Sum_probs=433.1

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  381 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s  381 (1068)
                      ....+.+|...++-..|||.|- ++|+|...|.|||||....+.+...+|+                 .-.++|..++|+
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd  112 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWD  112 (603)
T ss_pred             ceeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeC
Confidence            3566788999999999999996 7899999999999999876655544443                 245799999999


Q ss_pred             CCCCEEEEEeCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490          382 PDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  459 (1068)
Q Consensus       382 pdg~~las~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  459 (1068)
                      +|+++|++.+..  +..+++-+++|..+.   ++.||...|.+++|-|.... .++||++|++|.+|+=.--+...++..
T Consensus       113 ~ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~  188 (603)
T KOG0318|consen  113 FDSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFRE  188 (603)
T ss_pred             CCCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccc
Confidence            999999887543  334444444454444   67899999999999998776 899999999999998555566677888


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec---CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  536 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w  536 (1068)
                      |...|+++.|+|  ||.++++++.||+|.+||-.+++.+..+.   .|.+.|.+++|+||++.+++++.    +.++++|
T Consensus       189 HskFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIW  262 (603)
T KOG0318|consen  189 HSKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIW  262 (603)
T ss_pred             cccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEE
Confidence            999999999977  78899999999999999999999988887   78889999999999999999987    5679999


Q ss_pred             eCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEE
Q 001490          537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  616 (1068)
Q Consensus       537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  616 (1068)
                      |+.+.++++++.....-......+.|.  +..|++.+-+|+|.+++...+..+..+.+|.  ..|++++.+|++++|++|
T Consensus       263 dVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  263 DVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSG  338 (603)
T ss_pred             EeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEee
Confidence            999999999987655323444555665  5689999999999999999999888888775  469999999999999999


Q ss_pred             ECCCeEEEEECCCCceeeec-cccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccC
Q 001490          617 ANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  695 (1068)
Q Consensus       617 ~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  695 (1068)
                      +.||.|.-|+...+..-... ++|...|.+++.+                       +...+++.+.|.++++.++....
T Consensus       339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             ccCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCc
Confidence            99999999999988655443 6788888877765                       23457888899999998765332


Q ss_pred             CcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCC
Q 001490          696 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  775 (1068)
Q Consensus       696 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (1068)
                      -.......+     .....+++..+++..++.....+.+.+-+...                         ....     
T Consensus       396 ~t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----  440 (603)
T KOG0318|consen  396 YTKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----  440 (603)
T ss_pred             ccccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----
Confidence            222221111     12334788888887666655554444322211                         1111     


Q ss_pred             CCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeE--EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc
Q 001490          776 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  852 (1068)
Q Consensus       776 ~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  852 (1068)
                      .......++|++|+++.+|+|+ |+.|+||.+..+...  ..+..|.++|++++||| |+.+||+|...+.+.+||..+.
T Consensus       441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccC
Confidence            1355678999999999999998 799999999875533  34567999999999999 9999999999999999999998


Q ss_pred             eeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe
Q 001490          853 EVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  931 (1068)
Q Consensus       853 ~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~  931 (1068)
                      +.... +.-|+.+|.+++|+|+.+++|||+-|-.|.||+++....    .+.....|..   .|..+.|-.+...+-++.
T Consensus       520 ~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~  592 (603)
T KOG0318|consen  520 EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQ  592 (603)
T ss_pred             ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccC
Confidence            76433 334999999999999999999999999999999997542    2444555655   599999999888887899


Q ss_pred             CCeEEEEECC
Q 001490          932 ETHLAIYEAE  941 (1068)
Q Consensus       932 d~~i~vwd~~  941 (1068)
                      |..|++|++.
T Consensus       593 Da~iK~W~v~  602 (603)
T KOG0318|consen  593 DANIKVWNVT  602 (603)
T ss_pred             cceeEEeccc
Confidence            9999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-50  Score=425.39  Aligned_cols=578  Identities=15%  Similarity=0.213  Sum_probs=464.5

Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      .+.|++||..+++-..+ .|.++|+..++....   .-.+...|.+++.||+|.  ++++....|...+-++.....++.
T Consensus        19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence            58899999999887544 599999988764321   225677899999999999  888889999999999888888888


Q ss_pred             eccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--------ceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490          457 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  528 (1068)
Q Consensus       457 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~  528 (1068)
                      +. ...+|.+++|+|  ||++++.+ ..+.+.+|......        ....+.++-..+.++.|+.|.+++++++.   
T Consensus        93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr---  165 (893)
T KOG0291|consen   93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR---  165 (893)
T ss_pred             Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence            75 678899999977  66555554 56789999764432        23356677779999999999999999986   


Q ss_pred             CceeEEEEeCCCCee--eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC---------------------
Q 001490          529 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------------------  585 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------------------  585 (1068)
                       |..+++|+++..+-  ...+.+|.   +.|.++.|..+...+++.+.||.+.+|....                     
T Consensus       166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~  241 (893)
T KOG0291|consen  166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD  241 (893)
T ss_pred             -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence             67799999886555  55677777   9999999999999999999999999997761                     


Q ss_pred             --CeE---------EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490          586 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  654 (1068)
Q Consensus       586 --~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  654 (1068)
                        ++.         ....-.......+.+.+|++....|+++-..|...+|++..-..++.+......|..++++.    
T Consensus       242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~----  317 (893)
T KOG0291|consen  242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS----  317 (893)
T ss_pred             ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc----
Confidence              111         00111111224588999999999999999999999999999999999988888888888863    


Q ss_pred             cccccccCeeeecCCCCCCcccceeeccc-ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCcc
Q 001490          655 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  733 (1068)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  733 (1068)
                                        .|.+++.++.. |.+.+|+..      ...+.+..++|...+.+++++|||+++++|+.||.
T Consensus       318 ------------------tGDWiA~g~~klgQLlVweWq------sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  318 ------------------TGDWIAFGCSKLGQLLVWEWQ------SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             ------------------cCCEEEEcCCccceEEEEEee------ccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence                              45566665544 788899865      23455666779999999999999999999999999


Q ss_pred             EEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeE
Q 001490          734 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  812 (1068)
Q Consensus       734 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~  812 (1068)
                      |+|||                      ..+|.|+.++.-    |...|+.+.|+..|+.+++++ ||+|+.||+...+..
T Consensus       374 VKvWn----------------------~~SgfC~vTFte----Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  374 VKVWN----------------------TQSGFCFVTFTE----HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             EEEEe----------------------ccCceEEEEecc----CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence            99886                      456777877653    999999999999999999999 999999999999999


Q ss_pred             EEecCCCC-CeEEEEEeCCCCCEEEEEECCC-eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          813 LTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       813 ~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      +++..+.. ...|++..| .|.++.+|+.|. .|++|++++|+.+..+.||.++|.+++|+|+|..|+++|.|.+|++||
T Consensus       428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            99986554 668999999 899999999886 899999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeec------c------------
Q 001490          891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWF------P------------  951 (1068)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~------~------------  951 (1068)
                      +-..... ...++..       ..+..++|+|||+.||+ +-||.|.+||...+.....+-      .            
T Consensus       507 if~s~~~-vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  507 IFSSSGT-VETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN  578 (893)
T ss_pred             eeccCce-eeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence            9763211 1122222       14889999999999998 789999999998766553211      0            


Q ss_pred             -CCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecccc----------------------------------
Q 001490          952 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA----------------------------------  996 (1068)
Q Consensus       952 -~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~----------------------------------  996 (1068)
                       ......+.+++|+||.+|++||....|.+|++.++-+++++....                                  
T Consensus       579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~  658 (893)
T KOG0291|consen  579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG  658 (893)
T ss_pred             cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence             125788999999999999999999999999999999998886110                                  


Q ss_pred             ----ccCCCC----c----cCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490          997 ----YLRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus       997 ----~~~~~~----~----~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
                          .+|...    .    .-.|.+..+.|+| .++-+|++++.|.+ +|.+
T Consensus       659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEGl~-IYsl  708 (893)
T KOG0291|consen  659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEGLL-IYSL  708 (893)
T ss_pred             cccccCCccccCCccccccCceEEEEEEEECC-CcCeeeeecccceE-EEec
Confidence                111110    0    1136678999999 78999999999853 3444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-50  Score=424.23  Aligned_cols=590  Identities=17%  Similarity=0.215  Sum_probs=455.9

Q ss_pred             CccC-CCCCccCCC-CccccccccccCCCccCCCccceeeecc-cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCC
Q 001490          267 GVSL-KNIPDYSPK-SSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG  343 (1068)
Q Consensus       267 ~~~~-~s~~~fsP~-~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~  343 (1068)
                      +..| ...+.|+|+ .|.+..+-+.   ..+.++..+...||. .+...|.+++.||+|. +|.+....|...+-++...
T Consensus        12 GTvyr~Gnl~ft~dG~sviSPvGNr---vsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r   87 (893)
T KOG0291|consen   12 GTVYRAGNLVFTKDGNSVISPVGNR---VSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSR   87 (893)
T ss_pred             cceeecCcEEECCCCCEEEeccCCE---EEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccc
Confidence            3344 346777777 3433333222   233444455556666 5667999999999997 6677778899999999888


Q ss_pred             cceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCc-----ccceEEEccccc
Q 001490          344 QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVG  418 (1068)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~~~~h~~  418 (1068)
                      ..++.+++                    +.+|.|+.|||||+++|+|. .+.+.||.......     .....++.+|..
T Consensus        88 ~Vlh~f~f--------------------k~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd  146 (893)
T KOG0291|consen   88 SVLHRFNF--------------------KRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD  146 (893)
T ss_pred             eeeEEEee--------------------cCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcc
Confidence            88776543                    46899999999999999885 45699998765332     233446778999


Q ss_pred             cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce--eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC--
Q 001490          419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--  494 (1068)
Q Consensus       419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~--  494 (1068)
                      .|.++.|+.|.+  ++++|+.|.++++|++...+-  .+.+.+|.+.|.++-|..  |...+++.+.||.+.+|..+.  
T Consensus       147 di~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P  222 (893)
T KOG0291|consen  147 DITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRP  222 (893)
T ss_pred             ceeEEEeccCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCC
Confidence            999999999999  899999999999999886655  577899999999888754  556899999999999997761  


Q ss_pred             ---------------------CCc-----------eEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490          495 ---------------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       495 ---------------------~~~-----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                                           ++.           ...+......+++.+|++..+.|+++..++    ...+|++....
T Consensus       223 ~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG----~f~LyelP~f~  298 (893)
T KOG0291|consen  223 PELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG----EFGLYELPDFN  298 (893)
T ss_pred             cccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC----eeEEEecCCce
Confidence                                 111           011222335789999999999999998744    58899999999


Q ss_pred             eeeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490          543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  621 (1068)
Q Consensus       543 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  621 (1068)
                      +++.+.-..   ..|..++|+..|.+|+.|+ .-|.+.||+..+..-+...++|  ...+.+++++|||+++|+|++||.
T Consensus       299 lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  299 LIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             EEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCc
Confidence            999888766   7899999999999999976 5589999999987777666655  567999999999999999999999


Q ss_pred             EEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccce
Q 001490          622 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  701 (1068)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  701 (1068)
                      |+|||...+-++.++..                                                               
T Consensus       374 VKvWn~~SgfC~vTFte---------------------------------------------------------------  390 (893)
T KOG0291|consen  374 VKVWNTQSGFCFVTFTE---------------------------------------------------------------  390 (893)
T ss_pred             EEEEeccCceEEEEecc---------------------------------------------------------------
Confidence            99999998877766654                                                               


Q ss_pred             eecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCe
Q 001490          702 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  781 (1068)
Q Consensus       702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  781 (1068)
                             |...++.+.|+..|+.+++.+-||+|+.||+...                      .+..++..+   .....
T Consensus       391 -------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~Qf  438 (893)
T KOG0291|consen  391 -------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQF  438 (893)
T ss_pred             -------CCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---Cceee
Confidence                   5566777777888888888888888888876432                      223333322   34556


Q ss_pred             eEEEEecCCCEEEEEe-C-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-eeeeee
Q 001490          782 PCFALSKNDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKL  858 (1068)
Q Consensus       782 ~~l~~s~dg~~l~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~~  858 (1068)
                      .|++..|.|..++.|+ | -.|.+|+++||+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-.. ..+.++
T Consensus       439 scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl  517 (893)
T KOG0291|consen  439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETL  517 (893)
T ss_pred             eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeE
Confidence            7999999999999988 4 3499999999999999999999999999999 8999999999999999998654 344555


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee----eeee--------cCCCcccCCCCceEEEEeeCCCE
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----RSLQ--------TPDGVMTLAPSETHIQFHKDQTR  926 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~--------~~~~~~~~~~~v~~~~~spdg~~  926 (1068)
                      + +...+..++|+|||+.|+++.-||.|.+||.+.+.....    +-+.        ....+......++.+++|+||.+
T Consensus       518 ~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~  596 (893)
T KOG0291|consen  518 E-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC  596 (893)
T ss_pred             e-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence            5 667799999999999999999999999999987543310    0000        00011111247899999999999


Q ss_pred             EEE-EeCCeEEEEECCCceeeeeeccC----------------------------------------------------C
Q 001490          927 FLL-VHETHLAIYEAEELTCLKQWFPI----------------------------------------------------S  953 (1068)
Q Consensus       927 la~-~~d~~i~vwd~~~~~~~~~~~~~----------------------------------------------------h  953 (1068)
                      |++ |..+.|++|++.++..+..+...                                                    +
T Consensus       597 IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr  676 (893)
T KOG0291|consen  597 ILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRR  676 (893)
T ss_pred             EEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccc
Confidence            998 67788999999887665442211                                                    0


Q ss_pred             ---CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEe
Q 001490          954 ---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI  992 (1068)
Q Consensus       954 ---~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~  992 (1068)
                         .-.|.++.|||.|+.++.++..| +.||.+++.-+..-+
T Consensus       677 ~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf  717 (893)
T KOG0291|consen  677 FRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPF  717 (893)
T ss_pred             cCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceEEccc
Confidence               12478899999999999999887 778888876554333

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.6e-52  Score=398.53  Aligned_cols=470  Identities=18%  Similarity=0.272  Sum_probs=380.8

Q ss_pred             CccccccCcccc----HHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhh-
Q 001490            2 HRLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKD-   76 (1068)
Q Consensus         2 ~~le~esg~~~~----~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~-   76 (1068)
                      +.|++|.+++|+    +..|-+.|-+|+||.+++.+++|++.+.+.      --+|||..||++|.++...|-.+||+- 
T Consensus        28 ~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~kkL------~dLYEqivlEliELREL~tAR~~lRQTd  101 (508)
T KOG0275|consen   28 QTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPDKKL------IDLYEQIVLELIELRELGTARSLLRQTD  101 (508)
T ss_pred             HHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCchhHH------HHHHHHHHHHHHHHHhhhHHHHHHhccC
Confidence            468999999996    999999999999999999999997765554      468999999999999999999999954 


Q ss_pred             -ccccCCCCHHHHHHHHhhhcccCccChhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcchhHHHHHHHhh
Q 001490           77 -LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQS  155 (1068)
Q Consensus        77 -l~p~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa  155 (1068)
                       +.-|.+.++++|-+|-.||..+-++..+.+.+  ......|..+.+.|..    ++..        +||.||..||.||
T Consensus       102 pM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d--ssKEkrRa~IAQ~ls~----EV~V--------VppSRLlaLlGQa  167 (508)
T KOG0275|consen  102 PMIMLKQIQPERYIRLENLLNRSYFDPREAYGD--SSKEKRRAVIAQALSG----EVHV--------VPPSRLLALLGQA  167 (508)
T ss_pred             ceehhhccChHHHHHHHHHhcccccChhhhcCc--chHHHHHHHHHHHhcC----ceEE--------cChHHHHHHHHHH
Confidence             33345678999999999999888776666543  1223445555555544    4432        8999999999999


Q ss_pred             cccchhcccCCCCCCCCCcceeecccCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCcccccccccccccCCCCCCcc
Q 001490          156 LNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKA  235 (1068)
Q Consensus       156 ~~~Q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  235 (1068)
                      ++||+.+.+.|. ... ..||.......      ++                                            
T Consensus       168 LKWQqHQGLLPP-Gt~-iDLFRGkAA~K------~~--------------------------------------------  195 (508)
T KOG0275|consen  168 LKWQQHQGLLPP-GTT-IDLFRGKAAMK------DQ--------------------------------------------  195 (508)
T ss_pred             hhhHhhcCCCCC-Cce-eeeccchhhhh------hh--------------------------------------------
Confidence            999998877664 111 13333322211      00                                            


Q ss_pred             ccccCCCCCCCCcCCccccccCCCCceeeecCccCCCCCccCCCCccccccccccCCCccCCCccceeeecc-cCCCCce
Q 001490          236 VTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPM  314 (1068)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~  314 (1068)
                                               .+                                 ...|..+.+.++ +.+..+.
T Consensus       196 -------------------------~E---------------------------------e~~Pt~l~r~IKFg~KSh~E  217 (508)
T KOG0275|consen  196 -------------------------EE---------------------------------ERYPTQLARSIKFGQKSHVE  217 (508)
T ss_pred             -------------------------Hh---------------------------------hhchHHhhhheecccccchh
Confidence                                     01                                 223344444445 5566899


Q ss_pred             EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCc
Q 001490          315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  394 (1068)
Q Consensus       315 ~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~  394 (1068)
                      |..|||||+ +|++|+.||-|.+||..+|+..+...++.-|           .+.-+..+|.|+.||.|...||+|+.||
T Consensus       218 cA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMmd~aVlci~FSRDsEMlAsGsqDG  285 (508)
T KOG0275|consen  218 CARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMMDDAVLCISFSRDSEMLASGSQDG  285 (508)
T ss_pred             heeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeecccceEEEeecccHHHhhccCcCC
Confidence            999999998 6799999999999999999988754443222           1445789999999999999999999999


Q ss_pred             EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCC
Q 001490          395 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN  474 (1068)
Q Consensus       395 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~  474 (1068)
                      .|+||.+.+|.+++...  ..|+..|+|+.||.|+.  .+++++.|.++++.-+.+|++++.++||...|+...|.+  |
T Consensus       286 kIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~--d  359 (508)
T KOG0275|consen  286 KIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD--D  359 (508)
T ss_pred             cEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHHhcCccccccceEEcC--C
Confidence            99999999999988432  28999999999999999  699999999999999999999999999999999999855  8


Q ss_pred             ccEEEEEEcCCcEEEEeCCCCCceEEecCCC--CcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490          475 IHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  551 (1068)
Q Consensus       475 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  551 (1068)
                      |..+++++.||+|++|+..+.++..++...+  .+|.++..-| +...+++|..    .+++++.++ .|+.++.+....
T Consensus       360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----sntv~imn~-qGQvVrsfsSGk  434 (508)
T KOG0275|consen  360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----SNTVYIMNM-QGQVVRSFSSGK  434 (508)
T ss_pred             CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----CCeEEEEec-cceEEeeeccCC
Confidence            8899999999999999999999988776544  4677877777 4456777765    456999887 577888887665


Q ss_pred             cccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490          552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  626 (1068)
Q Consensus       552 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  626 (1068)
                      ...+...++..+|.|.++++.++|+.++.|...+|++..++..|..  .+..++-+|..+++|+-+.||.+++|.
T Consensus       435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchhhhhcccchhhhcC
Confidence            5567788889999999999999999999999999999999988755  478899999999999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-48  Score=413.66  Aligned_cols=580  Identities=15%  Similarity=0.189  Sum_probs=444.3

Q ss_pred             CceEEEE-cCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE
Q 001490          312 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  390 (1068)
Q Consensus       312 ~V~~v~~-spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~  390 (1068)
                      .+..+.. +..|+++ |+ +....|.+||+.+|+......                 .......|+|+.-+||.-.||+|
T Consensus        23 N~~~~~~~~~~Gr~v-a~-~a~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAV-AV-SALEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcEE-EE-eccccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence            3333333 3458743 33 333789999999996554311                 22234689999999999999999


Q ss_pred             eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeee
Q 001490          391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  470 (1068)
Q Consensus       391 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~  470 (1068)
                      ..||.|+||+..++....   ++.+|...|+++.|...|.  .|++|+.|+.|.+||+-...-+.++.||...|+..-|.
T Consensus        84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            999999999999875333   7889999999999999999  89999999999999999888899999999999998885


Q ss_pred             ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe--------
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--------  542 (1068)
Q Consensus       471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--------  542 (1068)
                      .  +..++++.+.|+.|++||+.+..+..+...+...+..+++.+  +.+++++.    ++.+.+|++....        
T Consensus       159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~  230 (888)
T KOG0306|consen  159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY  230 (888)
T ss_pred             C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence            4  456999999999999999999999999999999999999988  67777765    4459999883110        


Q ss_pred             ----eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE--------Ee--CC-------------
Q 001490          543 ----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT--------ID--AG-------------  595 (1068)
Q Consensus       543 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--------~~--~~-------------  595 (1068)
                          ...++...  ..+....+...++++++++-+.|..+.++.+.+.+.+..        ..  ..             
T Consensus       231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence                11112211  134555666778888899999999999998865321100        00  00             


Q ss_pred             ---------CCCCCCceEEEecCCC---EEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCe
Q 001490          596 ---------GGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  663 (1068)
Q Consensus       596 ---------~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  663 (1068)
                               .....+.++.+-|.+.   .|+. -.++++..|.++......                             
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~-----------------------------  358 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS-----------------------------  358 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-----------------------------
Confidence                     0011244455555332   2222 444555555544210000                             


Q ss_pred             eeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCc
Q 001490          664 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  743 (1068)
Q Consensus       664 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~  743 (1068)
                                                    ..+..  .-.+...+|...|+++++|.+...+++++ ++.+++|+     
T Consensus       359 ------------------------------p~~~~--~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn-----  400 (888)
T KOG0306|consen  359 ------------------------------PEADR--TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN-----  400 (888)
T ss_pred             ------------------------------ccccc--cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE-----
Confidence                                          00001  11122245999999999999987555554 45677665     


Q ss_pred             cCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCe
Q 001490          744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA  822 (1068)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i  822 (1068)
                                       ..+.+|+.++.      ...+.+..|-|.++++++|. .|.+.+||+.+...+.+++.|.+.|
T Consensus       401 -----------------~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI  457 (888)
T KOG0306|consen  401 -----------------RDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI  457 (888)
T ss_pred             -----------------ccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence                             45566666643      34788999999999999998 5999999999999999999999999


Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEEcCC-----ceee--------eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001490          823 TSLAFNPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  889 (1068)
Q Consensus       823 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~~~~--------~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iw  889 (1068)
                      .+++.+| |++.+++|+.|.+|++||..-     |...        ++++ -.+.|.|+.+||||++||.+=-|.+|+||
T Consensus       458 Wsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  458 WSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             eeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            9999999 999999999999999999742     2111        1222 35679999999999999999999999999


Q ss_pred             ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCE
Q 001490          890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM  968 (1068)
Q Consensus       890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~  968 (1068)
                      -+++     ....-.+.||.-   +|.++..|||++++++ +.|.+|+||-++=|.|..+++ +|...|.++.|.|+..+
T Consensus       536 flDt-----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~  606 (888)
T KOG0306|consen  536 FLDT-----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHL  606 (888)
T ss_pred             Eecc-----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEccccee
Confidence            9998     446666778876   8999999999999999 689999999999999998854 79999999999999999


Q ss_pred             EEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490          969 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus       969 l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
                      +.|+|.|+.|+-||-..-+.+..+..        |-..++  |++.+| +|.++++++.|..|++|+-.+
T Consensus       607 FFt~gKD~kvKqWDg~kFe~iq~L~~--------H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  607 FFTCGKDGKVKQWDGEKFEEIQKLDG--------HHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEEecCcceEEeechhhhhhheeecc--------chheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence            99999999999999999998877772        233345  677778 689999999999999999876

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-48  Score=413.31  Aligned_cols=547  Identities=13%  Similarity=0.201  Sum_probs=433.7

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      +.+|+|++-+||.- +||+|..||.|+||+..++..+..                   +.||...|+++.|...|.+||+
T Consensus        65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS  124 (888)
T KOG0306|consen   65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS  124 (888)
T ss_pred             cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence            35899999999985 889999999999999998866544                   7799999999999999999999


Q ss_pred             EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  469 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~  469 (1068)
                      |+.|+.|.+||+-......   .+.||...|+.+-|..+.+  ++++.+.|+.|++||+++..+..+...|.+.++.+++
T Consensus       125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~  199 (888)
T KOG0306|consen  125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL  199 (888)
T ss_pred             cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence            9999999999997754333   6889999999999998777  8999999999999999999999999999999999999


Q ss_pred             eecCCccEEEEEEcCCcEEEEeCCCCCce-------------EEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490          470 HAKENIHFIFSISVDGKIKAWLYDSLGAR-------------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  536 (1068)
Q Consensus       470 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-------------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w  536 (1068)
                      .+    ..+++++.|+.+++|++......             .......+....++..++++++++-+.    +..+.++
T Consensus       200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~----d~~~e~f  271 (888)
T KOG0306|consen  200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGA----DKVIELF  271 (888)
T ss_pred             ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecc----hhhhhhe
Confidence            65    58999999999999998321110             011122223455667778888877665    4456677


Q ss_pred             eCCCCeeeeE--------------------------------EeccccccCCeEEEEEecCCCEE--EEEECCCeEEEEE
Q 001490          537 NESEGAIKRT--------------------------------YQGLQLQHNSVSVVHFDTAKDQI--LAAGDDHVIKIWD  582 (1068)
Q Consensus       537 d~~~~~~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~l--~~~s~dg~i~iwd  582 (1068)
                      .+.+.+.+..                                +... .....+.++.+.|.++..  +..-.++++..|.
T Consensus       272 rI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i-r~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ys  350 (888)
T KOG0306|consen  272 RIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI-RTSAKIKSFDVTPSGGTENTLVLLANNTVEWYS  350 (888)
T ss_pred             eecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe-echhheeEEEEEecCCcceeEEEeecCceEEEE
Confidence            6654321100                                0000 012457778887765322  2235678888887


Q ss_pred             cCC-Ce------EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccc
Q 001490          583 MNK-VQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  655 (1068)
Q Consensus       583 ~~~-~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  655 (1068)
                      ++. +.      .+..+...++...|.++++|.+...+++|+. +.+++|+..+.+++.++...  .+.+..|       
T Consensus       351 l~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~F-------  420 (888)
T KOG0306|consen  351 LENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKF-------  420 (888)
T ss_pred             eccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEe-------
Confidence            765 21      2344555566778999999999887777765 78999999999999888743  4444444       


Q ss_pred             ccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEE
Q 001490          656 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL  735 (1068)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~  735 (1068)
                                     -|.+++++.|...|.+.++|+.........      ..|.+.|.+++.+||++.+++++.|.+|+
T Consensus       421 ---------------vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti------~AHdgaIWsi~~~pD~~g~vT~saDktVk  479 (888)
T KOG0306|consen  421 ---------------VPGDRYIVLGTKNGELQVFDLASASLVETI------RAHDGAIWSISLSPDNKGFVTGSADKTVK  479 (888)
T ss_pred             ---------------cCCCceEEEeccCCceEEEEeehhhhhhhh------hccccceeeeeecCCCCceEEecCCcEEE
Confidence                           377899999999999999998744332222      24999999999999999999999999999


Q ss_pred             EEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEE
Q 001490          736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT  814 (1068)
Q Consensus       736 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~  814 (1068)
                      +|++..... ..|...     ++.....   ..+.     .-...|.|+.+||||++||++- |++++||-+.+.+....
T Consensus       480 fWdf~l~~~-~~gt~~-----k~lsl~~---~rtL-----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls  545 (888)
T KOG0306|consen  480 FWDFKLVVS-VPGTQK-----KVLSLKH---TRTL-----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS  545 (888)
T ss_pred             EEeEEEEec-cCcccc-----eeeeecc---ceEE-----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence            999854322 111100     0000000   1111     1467899999999999999997 99999999999999999


Q ss_pred             ecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001490          815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  894 (1068)
Q Consensus       815 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~  894 (1068)
                      +.+|.-+|.|+.+|| |+++++||+.|+.|+||-+.-|.|.+.+-+|.+.|.++.|.|+...+.++|.|+.|+-||-+. 
T Consensus       546 LYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-  623 (888)
T KOG0306|consen  546 LYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-  623 (888)
T ss_pred             ecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-
Confidence            999999999999999 999999999999999999999999999999999999999999999999999999999999887 


Q ss_pred             ceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce
Q 001490          895 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT  944 (1068)
Q Consensus       895 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~  944 (1068)
                          ...++.+.+|..   .|.+++.+|+|.++++ +.|..|++|......
T Consensus       624 ----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  624 ----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             ----hhhheeeccchh---eeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence                447788888887   8999999999999999 688999999976543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-50  Score=395.47  Aligned_cols=333  Identities=20%  Similarity=0.324  Sum_probs=304.1

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ..|...+.||.+.|.|++|||+|+ .||+|+.|.++++||+.+..+..+                   .++|...|.|++
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva  164 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA  164 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence            578888999999999999999998 579999999999999999888765                   789999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT  454 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~  454 (1068)
                      |||||+.||+|+.||+|++||.++|+++..  .+.+|...|++++|-|     ..+  +|++++.||.|+|||+..+.++
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence            999999999999999999999999987654  6789999999999965     456  7999999999999999999999


Q ss_pred             eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEc-----------cCCC-----
Q 001490          455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR-----  518 (1068)
Q Consensus       455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~~-----  518 (1068)
                      ..+.+|..+|++++|-.  + .++++++.|++|++|+...+.....+.+|.+.|+.++.+           |.++     
T Consensus       241 ~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            99999999999999843  2 399999999999999999988999999999999999887           2233     


Q ss_pred             --------------------EEEEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCe
Q 001490          519 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  577 (1068)
Q Consensus       519 --------------------~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~  577 (1068)
                                          .|++++.    +.++.+|+... .+++..+.+|+   ..|+.+.|+||++++++++.|..
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence                                4888875    66799999764 45788888998   99999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccc
Q 001490          578 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  657 (1068)
Q Consensus       578 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  657 (1068)
                      |++||..+|+.+..+.+|  ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++        
T Consensus       391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws--------  460 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS--------  460 (480)
T ss_pred             eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence            999999999999999866  5679999999999999999999999999999999999999999999999995        


Q ss_pred             ccccCeeeecCCCCCCcccceeecccccceeec
Q 001490          658 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  690 (1068)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd  690 (1068)
                                    |||..+++++.|..+++|.
T Consensus       461 --------------pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 --------------PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --------------CCCceeecCCCceEEEeec
Confidence                          7899999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.3e-50  Score=392.65  Aligned_cols=367  Identities=20%  Similarity=0.291  Sum_probs=297.1

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +.||.++|.|++|+|+|++||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            77999999999999999999999999999999999976554   7889999999999999999  899999999999999


Q ss_pred             CCCCcee-eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490          448 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       448 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      ..+|+++ ..+.+|...|++++|.|-                                       ...|..++|++++. 
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk-  225 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK-  225 (480)
T ss_pred             CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence            9999876 678999999999999762                                       23366778888765 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  606 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  606 (1068)
                         |+.++|||+..+.++..+.+|.   ..|+|+.|..+| +|++|+.|++|++|+...|.+...+.+|.+  .|+.++.
T Consensus       226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal  296 (480)
T KOG0271|consen  226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL  296 (480)
T ss_pred             ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence               5569999999999999999999   999999998765 899999999999999999999999998876  4888888


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccc
Q 001490          607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  686 (1068)
Q Consensus       607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  686 (1068)
                      +.|- .|-+|..|.+        +.........    ...+.....                                  
T Consensus       297 sTdy-~LRtgaf~~t--------~~~~~~~se~----~~~Al~rY~----------------------------------  329 (480)
T KOG0271|consen  297 STDY-VLRTGAFDHT--------GRKPKSFSEE----QKKALERYE----------------------------------  329 (480)
T ss_pred             cchh-hhhccccccc--------cccCCChHHH----HHHHHHHHH----------------------------------
Confidence            7652 2222322211        1110000000    000000000                                  


Q ss_pred             eeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCc
Q 001490          687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  766 (1068)
Q Consensus       687 ~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (1068)
                                                   ...-..++++++++.|.++.+|+-....                     ++
T Consensus       330 -----------------------------~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp  359 (480)
T KOG0271|consen  330 -----------------------------AVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP  359 (480)
T ss_pred             -----------------------------HhhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence                                         0001123456667777777766522111                     00


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEE
Q 001490          767 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  845 (1068)
Q Consensus       767 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  845 (1068)
                      +..  .+  +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-+.|..++||. |.++|++|+.|.+++
T Consensus       360 i~r--mt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  360 ITR--MT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK  434 (480)
T ss_pred             hhh--hh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence            111  11  4899999999999999999999 99999999999999999999999999999999 999999999999999


Q ss_pred             EEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          846 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       846 iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      +|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-42  Score=365.13  Aligned_cols=622  Identities=14%  Similarity=0.171  Sum_probs=416.4

Q ss_pred             ceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe-
Q 001490          313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  391 (1068)
Q Consensus       313 V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~-  391 (1068)
                      -..++.+|-.. ++|.-. ...|.+||+....+-+.                   +..|..+++|++||++|+|+|+|- 
T Consensus        40 ~~gLa~~p~Sg-l~aYpA-GCvVVlfn~~~~tQ~hl-------------------vnssRk~~t~vAfS~~GryvatGEc   98 (1080)
T KOG1408|consen   40 ANGLASVPCSG-LCAYPA-GCVVVLFNVDSCTQSHL-------------------VNSSRKPLTCVAFSQNGRYVATGEC   98 (1080)
T ss_pred             CCccccccccc-ceeecc-CcEEEEEcccccchhhe-------------------ecccCcceeEEEEcCCCcEEEeccc
Confidence            34566677665 334321 26799999987655432                   556888999999999999999983 


Q ss_pred             -CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC--CCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001490          392 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC  468 (1068)
Q Consensus       392 -~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~i~  468 (1068)
                       ....++||++..-..+.   ++..|...|+|++|+|.++  ++++.|.  |-.|.+||++.......- .-...|..++
T Consensus        99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~  172 (1080)
T KOG1408|consen   99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVA  172 (1080)
T ss_pred             CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEE
Confidence             56679999999876555   6779999999999999999  6776664  446778987655433222 2345677788


Q ss_pred             eeecCCccEEEEEEcCCcEEEEeCCCCCceEE---ecCCCCc--------EEEEEE----ccCCCEEEEEeeCCCCceeE
Q 001490          469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLG--------CTRMAY----SANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~~~~--------i~~~~~----s~d~~~l~~~~~~~~~~~~i  533 (1068)
                      |  ++||.++++.+ ...|++|.++.......   +.+...-        ...++.    ..+..+.++.      .|.+
T Consensus       173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL  243 (1080)
T KOG1408|consen  173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL  243 (1080)
T ss_pred             E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence            7  45888888876 46799998876652211   1111100        000100    0011111111      1112


Q ss_pred             EEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC------------------
Q 001490          534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------------------  595 (1068)
Q Consensus       534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------------------  595 (1068)
                      .-+  .+.+++.+...-.  .....|++.+  .++|++|+.+|.|++|+..+-.-+.+++..                  
T Consensus       244 vEF--SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s  317 (1080)
T KOG1408|consen  244 VEF--SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS  317 (1080)
T ss_pred             eee--chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence            211  1222222211111  1334555554  579999999999999998875544443211                  


Q ss_pred             ----CCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCcee---eeccccccceeeeEEcCCccccccccccCeeeecC
Q 001490          596 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  668 (1068)
Q Consensus       596 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1068)
                          ...+...++.|++....|.+...|..++|||+++...+   ..+-.|...|+.+..-|..-...     ....   
T Consensus       318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac---  389 (1080)
T KOG1408|consen  318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC---  389 (1080)
T ss_pred             ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc---
Confidence                11233456789999999999999999999999876443   33445777777666554211100     0000   


Q ss_pred             CCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCc
Q 001490          669 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  748 (1068)
Q Consensus       669 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  748 (1068)
                        .|.+ -+++++.|++||+|+++............    -......+.+..+...++          -|          
T Consensus       390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNi----ls~~l~ki~y~d~~~q~~----------~d----------  442 (1080)
T KOG1408|consen  390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNI----LSANLSKIPYEDSTQQIM----------HD----------  442 (1080)
T ss_pred             --CCcc-ceeEecCCCcEEEeecccccccceeeccc----chhhhhcCccccCchhhh----------hh----------
Confidence              1222 37899999999999988633322211100    000111111111111000          00          


Q ss_pred             cceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEE
Q 001490          749 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF  827 (1068)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~  827 (1068)
                           ....++|-....        .......++++++||||++||+|+ .|.++||++...+....+..|..+|.|+.|
T Consensus       443 -----~~~~~fdka~~s--------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey  509 (1080)
T KOG1408|consen  443 -----ASAGIFDKALVS--------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY  509 (1080)
T ss_pred             -----ccCCcccccchh--------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence                 001111111100        012566889999999999999998 599999999999999999999999999999


Q ss_pred             eCC--CCCEEEEEECCCeEEEEEcCC-ceeeeeecccccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeeeee
Q 001490          828 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSL  902 (1068)
Q Consensus       828 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~  902 (1068)
                      |-.  ..++||+++.|.-|.|||+.. ..++.++.+|+..|+++.|.-.|  ..+++++.|+.|.+ +..... .....+
T Consensus       510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~-~~g~~f  587 (1080)
T KOG1408|consen  510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKA-SSGRLF  587 (1080)
T ss_pred             cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccc-cCceec
Confidence            852  367999999999999999975 46788999999999999998887  78999999997654 333210 001111


Q ss_pred             ecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEECCCcEE
Q 001490          903 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS  979 (1068)
Q Consensus       903 ~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~  979 (1068)
                       ....+......+..++..|..+++++ +.|..|+|||+++|+....+...  |.+..-.+...|.|-||++...|+++.
T Consensus       588 -~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~  666 (1080)
T KOG1408|consen  588 -PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC  666 (1080)
T ss_pred             -cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence             11111111135889999999999999 79999999999999999886654  457777899999999999999999999


Q ss_pred             EEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490          980 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus       980 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
                      ++|+.+|+++++...+.          -.++.+.|.+ |.+.|++.+.||+|++|.++-
T Consensus       667 ~~Df~sgEcvA~m~GHs----------E~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  667 FVDFVSGECVAQMTGHS----------EAVTGVKFLN-DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEeccchhhhhhcCcc----------hheeeeeecc-cchhheeecCCceEEEEECch
Confidence            99999999999988433          3455699999 799999999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-40  Score=348.02  Aligned_cols=508  Identities=15%  Similarity=0.193  Sum_probs=377.3

Q ss_pred             ecccCCCCceEEEEcCCCCeEEEEEcC--cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490          305 TLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       305 ~l~~h~~~V~~v~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp  382 (1068)
                      .+..|..+++|+||||+|+ ++|+|-.  ...+++|++..-..+.+                   +..|+..|+|++|+|
T Consensus        73 lvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp  132 (1080)
T KOG1408|consen   73 LVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSP  132 (1080)
T ss_pred             eecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecC
Confidence            3456777999999999998 6798874  45699999998776665                   667999999999999


Q ss_pred             CCCEEEEEeCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee-----
Q 001490          383 DGSLLGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-----  455 (1068)
Q Consensus       383 dg~~las~~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-----  455 (1068)
                      .++|+++.+...  .|.+||+..+....    -..-...|..++|+.||.  +++|.+ ...|++|.++.++...     
T Consensus       133 ~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl  205 (1080)
T KOG1408|consen  133 GNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPL  205 (1080)
T ss_pred             CCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccc
Confidence            999999887654  67789887543222    123456799999999999  788887 6789999987665110     


Q ss_pred             --------Ee------------------------ccC-----------------CCcEEEEeeeecCCccEEEEEEcCCc
Q 001490          456 --------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDGK  486 (1068)
Q Consensus       456 --------~~------------------------~~h-----------------~~~v~~i~~~~~~~~~~l~s~s~dg~  486 (1068)
                              .+                        .||                 ...-.+|++    +.++|+.|+.+|.
T Consensus       206 ~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~  281 (1080)
T KOG1408|consen  206 PGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGM  281 (1080)
T ss_pred             cchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccce
Confidence                    00                        000                 011123333    3469999999999


Q ss_pred             EEEEeCCCCCceEEecCC------------------------CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490          487 IKAWLYDSLGARVDYDAP------------------------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       487 i~vwd~~~~~~~~~~~~~------------------------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                      |++++..+.....++...                        -...-.+.|++....|.+...    +..+++||++.-+
T Consensus       282 vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~  357 (1080)
T KOG1408|consen  282 VRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVN  357 (1080)
T ss_pred             eeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEeccccc
Confidence            999987654432221110                        002346778888888888775    6679999998765


Q ss_pred             eeeEEeccccccCCeEEEEEecC-----------CCEEEEEECCCeEEEEEcCCCeEEEEE-------------eC----
Q 001490          543 IKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------DA----  594 (1068)
Q Consensus       543 ~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~~----  594 (1068)
                      .+.+....-.|...|+.+.--|.           ...+++++.|++|++||+..+..-..+             ..    
T Consensus       358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~  437 (1080)
T KOG1408|consen  358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ  437 (1080)
T ss_pred             cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence            44332222222255666554441           235889999999999999753211100             00    


Q ss_pred             ------------------CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccc
Q 001490          595 ------------------GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  656 (1068)
Q Consensus       595 ------------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  656 (1068)
                                        -....++.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++...    
T Consensus       438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~----  513 (1080)
T KOG1408|consen  438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV----  513 (1080)
T ss_pred             hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch----
Confidence                              0122357899999999999999999999999999999999999999999999997321    


Q ss_pred             cccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCC--ceEEEeecCccE
Q 001490          657 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGVH  734 (1068)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~i  734 (1068)
                                     -..++|++++.|.-|.++|...     .+.+.....+|...|+++.|...|  ..+++++.|..+
T Consensus       514 ---------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksi  573 (1080)
T KOG1408|consen  514 ---------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI  573 (1080)
T ss_pred             ---------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence                           2358899999999999999752     223333335689999999999888  778999988766


Q ss_pred             EEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEE
Q 001490          735 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL  813 (1068)
Q Consensus       735 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~  813 (1068)
                      .. +....                  ..+|.......-+  -....+..+++.|..++++++. |..|+||++++++..+
T Consensus       574 mF-r~~qk------------------~~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  574 MF-RVNQK------------------ASSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             he-ehhcc------------------ccCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence            43 21110                  0111111111000  1345678999999999999998 8999999999999999


Q ss_pred             EecC---CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          814 TIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       814 ~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      .|++   |.+....+...| .|-+||+...|+++.++|+.+|+++.++.||...|+.+.|++|-+.|++++.||.|.||.
T Consensus       633 ~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             eecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            9986   556788899999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 001490          891 VDG  893 (1068)
Q Consensus       891 ~~~  893 (1068)
                      +..
T Consensus       712 lp~  714 (1080)
T KOG1408|consen  712 LPL  714 (1080)
T ss_pred             Cch
Confidence            864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.2e-42  Score=340.75  Aligned_cols=284  Identities=19%  Similarity=0.250  Sum_probs=266.7

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC--C
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G  384 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd--g  384 (1068)
                      -|.+.+|..+.||+|++ ++|||+.+|.++||+..++..+..                   +.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence            36677999999999998 789999999999999999977765                   8899999999999997  6


Q ss_pred             CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490          385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  464 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  464 (1068)
                      ..+|+|+.||++++|++++...+.   .+.+|...|..++|+|+|+  +|+|++.|.+-++||+.++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999876665   6889999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490          465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  544 (1068)
Q Consensus       465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~  544 (1068)
                      .+++|++  ||.++++|+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|++|+.    |++++|||++....+
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL  380 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence            9999977  8889999999999999999999999999999999999999999999999986    778999999999999


Q ss_pred             eEEeccccccCCeEEEEEec-CCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001490          545 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  623 (1068)
Q Consensus       545 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  623 (1068)
                      .++..|.   +.|..|.|+| .|.+|++++.|++++||...+..+++.+.+|..  .|.++.+++|+..+++++.|++++
T Consensus       381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence            9999998   9999999998 688999999999999999999999999998755  599999999999999999999999


Q ss_pred             EEE
Q 001490          624 ILE  626 (1068)
Q Consensus       624 iwd  626 (1068)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.5e-38  Score=335.43  Aligned_cols=644  Identities=15%  Similarity=0.168  Sum_probs=433.9

Q ss_pred             EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC---EEEEEe
Q 001490          315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAY  391 (1068)
Q Consensus       315 ~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~---~las~~  391 (1068)
                      ...|.|.+  ++|.|.. ..|.+||..+.....                   .+.||.++|+|+.|-|+.+   ++++|+
T Consensus        19 v~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~   76 (764)
T KOG1063|consen   19 VSSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD   76 (764)
T ss_pred             cccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence            34557766  4577655 789999987653332                   2889999999999999988   899999


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCcEE--EE
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SL  467 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~i  467 (1068)
                      .|+.|++|.++. +.......+.+|...+.|+  .....  ...+...|+++.+||.+..+  +...+.-..+.+.  ++
T Consensus        77 sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL  151 (764)
T KOG1063|consen   77 SDGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL  151 (764)
T ss_pred             CCCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence            999999999984 3344555777766655554  43322  22223689999999985554  2223322223333  33


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCC--CceEEecCCCCcEEEEEEccCCC---EEEEEeeCCCCceeEEEEeCCCCe
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~---~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                      ++.+.++.-.++.|+.+..|.++.-...  .....+.+|...|.+++|...+.   +|++++.    |..|++|.+.-+.
T Consensus       152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~  227 (764)
T KOG1063|consen  152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGD  227 (764)
T ss_pred             hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecC
Confidence            4445334445566777888888865533  34567889999999999987554   5555554    7789999765332


Q ss_pred             ---------------------eeeE----------EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC--eEE
Q 001490          543 ---------------------IKRT----------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLL  589 (1068)
Q Consensus       543 ---------------------~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~  589 (1068)
                                           ....          +.||.   +.|+++.|+|.+..|++++.|.++.+|...+.  -.+
T Consensus       228 ~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv  304 (764)
T KOG1063|consen  228 DEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV  304 (764)
T ss_pred             CccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEE
Confidence                                 1111          23666   99999999999999999999999999987654  333


Q ss_pred             EEEeC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC---ceeeeccccccceeeeEEcCCccccccccccCe
Q 001490          590 TTIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  663 (1068)
Q Consensus       590 ~~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  663 (1068)
                      .....   .+...+.....|+|++..+++-+..|..++|...+.   .....+.+|.+.|..+++.              
T Consensus       305 ~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~--------------  370 (764)
T KOG1063|consen  305 DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD--------------  370 (764)
T ss_pred             EEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec--------------
Confidence            33321   122334678999999999999999999999994443   3344567899999999996              


Q ss_pred             eeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCc
Q 001490          664 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  743 (1068)
Q Consensus       664 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~  743 (1068)
                              |.|.++++.+.|.+-|+|-....+ ..-..+.. .+.|...+.++++-+..-.+++++....+|+|+.+..-
T Consensus       371 --------psGeflLsvs~DQTTRlFa~wg~q-~~wHEiaR-PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f  440 (764)
T KOG1063|consen  371 --------PSGEFLLSVSLDQTTRLFARWGRQ-QEWHEIAR-PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF  440 (764)
T ss_pred             --------CCCCEEEEeccccceeeecccccc-cceeeecc-cccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence                    678899999999999998755211 11222222 24699999999999976678999999999999876432


Q ss_pred             cCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCe-------------EEEEEcc--
Q 001490          744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGV-------------ISLYIVM--  807 (1068)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~dg~-------------i~iwd~~--  807 (1068)
                      ...            .....|.+....+.  ......|..+-.|...-+. .+-+.+.             ..+....  
T Consensus       441 v~~------------l~~i~g~~~~~~~~--~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  441 VKS------------LMAICGKCFKGSDE--LPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             HHH------------HHHHhCccccCchh--cccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence            100            00000100000000  0022233333333222111 0000000             0011111  


Q ss_pred             -------CceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC-----eEEEEEcCCceeeeeecccccCeEEEEEcCCCC
Q 001490          808 -------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALN  875 (1068)
Q Consensus       808 -------~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  875 (1068)
                             ....+..+.+|...|.+++.+| +++++|+++...     .|++|+..+...+..+.+|+-.|+.|+|||||+
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~  585 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR  585 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc
Confidence                   0122345778999999999999 999999987653     789999999888889999999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCc--eeeee-ecc
Q 001490          876 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFP  951 (1068)
Q Consensus       876 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~--~~~~~-~~~  951 (1068)
                      +|+++|.|+++.+|........... +...+.|..   -|..+.|+||+.++|+ +.|.+|+||.....  +.+.. -..
T Consensus       586 ~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~  661 (764)
T KOG1063|consen  586 YLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL  661 (764)
T ss_pred             EEEEeecCceEEeeeeecccchhhh-hccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh
Confidence            9999999999999998664433222 233444544   5899999999999998 78999999999887  55443 234


Q ss_pred             CCCcCEEEEEEec-----CCCEEEEEECCCcEEEEEcCCCc----EEEEeccccccCCCCccCcccceEEEECCC-----
Q 001490          952 ISSVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLE----VQCRILSTAYLRPTTSCLHVYPHAIAAHPL----- 1017 (1068)
Q Consensus       952 ~h~~~v~~l~fs~-----dg~~l~t~~~dg~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 1017 (1068)
                      .+...|+++++.|     .+..+++|-..|.|.+|....-.    ..........-+...+...+  ..+.|.|.     
T Consensus       662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV--~rl~w~p~~~~~~  739 (764)
T KOG1063|consen  662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAV--NRLLWRPTCSDDW  739 (764)
T ss_pred             ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhh--heeEecccccccc
Confidence            5689999999987     23377888899999999966211    11111100111111112223  34667662     


Q ss_pred             ----CCCEEEEEeCCCcEEEEeCC
Q 001490         1018 ----KPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1018 ----~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                          ....|++|++|..++++++.
T Consensus       740 ~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  740 VEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccccceeEEeeecccceeEEeecc
Confidence                23457999999999999975

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-37  Score=333.06  Aligned_cols=580  Identities=16%  Similarity=0.162  Sum_probs=433.1

Q ss_pred             EEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcE
Q 001490          316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  395 (1068)
Q Consensus       316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~  395 (1068)
                      ..+..-|..++++.+.+.+..+||++.-..+..                   -..+...|+|++=..+  +..+++. ..
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g-~~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASG-NK   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecC-cE
Confidence            555555667888888999999999988776653                   2246678998886544  4444433 34


Q ss_pred             EEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-ce----eeEeccCCCcEEEEeee
Q 001490          396 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SR----TYSFEGHGAPVYSLCPH  470 (1068)
Q Consensus       396 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~----~~~~~~h~~~v~~i~~~  470 (1068)
                      |.+|.-  |+.++.  .+.+|...|.-+.  +-|.  .++++..++.+.||+..++ ..    +..++...+.|+++. +
T Consensus        97 i~~~~r--gk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYAR--GKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEEc--cceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            666654  332332  4557777777664  3466  6888999999999998874 21    112233333377664 4


Q ss_pred             ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  550 (1068)
Q Consensus       471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  550 (1068)
                      |+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--..++.|..    +|.|.+++++.++.+.+|+..
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence            4433347899999999999999999999999999999999999998889999876    667999999999999999987


Q ss_pred             ccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEEEEEe-CCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490          551 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       551 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      .   +.|++++|..||+.+++ |+..|.+.+||++..+.+..+. .|  ...+....|-|....+++++.|+.+++|-.+
T Consensus       244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD  318 (910)
T KOG1539|consen  244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFD  318 (910)
T ss_pred             c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEee
Confidence            6   89999999999987766 6677999999999988887776 33  3458889999999999999999999888666


Q ss_pred             CC----ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeec
Q 001490          629 ES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  704 (1068)
Q Consensus       629 ~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  704 (1068)
                      ++    +.++.-.||..+..++.|.                     ...|..+.+++.|++.+.+.+......+....  
T Consensus       319 ~~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~--  375 (910)
T KOG1539|consen  319 SGDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQ--  375 (910)
T ss_pred             CCCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcc--
Confidence            43    5667777899988888886                     46788899999999998887542211111100  


Q ss_pred             CCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490          705 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  784 (1068)
Q Consensus       705 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  784 (1068)
                                 ......++         .+.                      +...      ..  +    .-.+|..+
T Consensus       376 -----------~~~~~~~k---------k~~----------------------~~~~------~~--~----k~p~i~~f  401 (910)
T KOG1539|consen  376 -----------LHNKKRAK---------KVN----------------------VFST------EK--L----KLPPIVEF  401 (910)
T ss_pred             -----------cccccccc---------ccc----------------------ccch------hh--h----cCCcceee
Confidence                       00000000         000                      0000      00  0    11233344


Q ss_pred             EEecCC----CEEEEEe--CCeEEEEEccCcee-EEEec-----CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc
Q 001490          785 ALSKND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  852 (1068)
Q Consensus       785 ~~s~dg----~~l~~~~--dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  852 (1068)
                      ++.-..    .-++++.  +...+.|+...... ...+.     .....+++++.++ .|++.+.|+..|.|.+|++++|
T Consensus       402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG  480 (910)
T KOG1539|consen  402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG  480 (910)
T ss_pred             ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence            433211    1223332  46688999876544 22222     2346889999999 9999999999999999999999


Q ss_pred             eeeeee---cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490          853 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  929 (1068)
Q Consensus       853 ~~~~~~---~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  929 (1068)
                      -....+   ..|.++|++++...-++.+++++.+|.+++||++.....     ....-    ...+.++..+.....+|+
T Consensus       481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~-----~~l~l----~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK-----KSLRL----GSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee-----eeecc----CCCcceeeeeehhhhhhh
Confidence            988888   589999999999888899999999999999999985422     22211    125788888888888888


Q ss_pred             -EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCccc
Q 001490          930 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1008 (1068)
Q Consensus       930 -~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1068)
                       ..|-.|.++|+.+.+.++. +.||+..|+.++|||||++|++++.|++|++||+.++.++..+..           ...
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-----------d~~  619 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-----------DSP  619 (910)
T ss_pred             hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------CCc
Confidence             5677899999999998887 678999999999999999999999999999999999999977761           234


Q ss_pred             ceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001490         1009 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1035 (1068)
Q Consensus      1009 ~~~~~~~p~~~~~l~~~~~d-g~i~~w~ 1035 (1068)
                      +..++|+| ++++|||+..| ..|++|-
T Consensus       620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  620 CTSLSFSP-NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence            57899999 79999999999 6799996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=306.28  Aligned_cols=299  Identities=19%  Similarity=0.276  Sum_probs=255.8

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .+.-+|++|++.|+.++..+.+..++.+++.|.++.+|++.......-              .....+.||+..|..++.
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~   71 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVL   71 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEE
Confidence            355689999999999999999888999999999999999976422210              111228899999999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  460 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  460 (1068)
                      ++||++.++++.|+++++||+.+|+..+   .|.+|...|.+++|++|++  .+++|+.|++|++||+.. .+..++..+
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g-~ck~t~~~~  145 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLG-VCKYTIHED  145 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecc-cEEEEEecC
Confidence            9999999999999999999999996554   6889999999999999999  799999999999999654 455555443


Q ss_pred             --CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          461 --GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       461 --~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                        .+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.    ++.+.+||+
T Consensus       146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL  221 (315)
T KOG0279|consen  146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDL  221 (315)
T ss_pred             CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEc
Confidence              78999999999988899999999999999999999999999999999999999999999999875    667999999


Q ss_pred             CCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCC-------CCCCceEEEecCCC
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGT  611 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~  611 (1068)
                      +.++.+..+...    ..|.+++|+|+... +++..+..|+|||++++..+..+.....       .+...+++|++||.
T Consensus       222 ~~~k~lysl~a~----~~v~sl~fspnryw-L~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~  296 (315)
T KOG0279|consen  222 NEGKNLYSLEAF----DIVNSLCFSPNRYW-LCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ  296 (315)
T ss_pred             cCCceeEeccCC----CeEeeEEecCCcee-EeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence            999998777654    58999999998654 4444556699999999998877754322       23356789999999


Q ss_pred             EEEEEECCCeEEEEECC
Q 001490          612 LLAVIANENRIKILETP  628 (1068)
Q Consensus       612 ~l~~~~~dg~i~iwd~~  628 (1068)
                      .|++|..|+.|++|.+.
T Consensus       297 tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEeeecCCcEEEEEee
Confidence            99999999999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.4e-41  Score=332.34  Aligned_cols=285  Identities=17%  Similarity=0.258  Sum_probs=266.5

Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC
Q 001490          370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  449 (1068)
Q Consensus       370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~  449 (1068)
                      |.+.+|..+.||+|++.||+|+.+|.++||+..+...+.   ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            456799999999999999999999999999999875444   78999999999999998422279999999999999999


Q ss_pred             CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490          450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  529 (1068)
Q Consensus       450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~  529 (1068)
                      +...+..+.+|...|..++|+|  +|++|++++.|.+-++||+.+........+|...|.+++|.+||.++++|+.    
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl----  323 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL----  323 (459)
T ss_pred             CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence            9999999999999999999988  7789999999999999999999999999999999999999999999999986    


Q ss_pred             ceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-
Q 001490          530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-  608 (1068)
Q Consensus       530 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-  608 (1068)
                      |..-++||+++|+++..+.+|.   .+|.+|.|+|+|..+++||.|++++|||++..+.+.+++.|..  -|..|.|+| 
T Consensus       324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~  398 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ  398 (459)
T ss_pred             cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence            6678999999999999999998   9999999999999999999999999999999999999988755  589999999 


Q ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490          609 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  688 (1068)
Q Consensus       609 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  688 (1068)
                      .|.+|++++.|++++||...+..++..+.||.+.|.++.++                      +|+..+++++.|.++++
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL  456 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence            78999999999999999999999999999999999999996                      78999999999999999


Q ss_pred             ec
Q 001490          689 EK  690 (1068)
Q Consensus       689 wd  690 (1068)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            95

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=4.5e-38  Score=331.86  Aligned_cols=624  Identities=13%  Similarity=0.111  Sum_probs=414.7

Q ss_pred             ceeeecccCCCCceEEEEcCCCC--eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  378 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~--~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~  378 (1068)
                      ....+|.||..+|+|+.|-|+.+  ..+++|+.|+.|++|.++.........                 +.+|...+  +
T Consensus        45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~--~  105 (764)
T KOG1063|consen   45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKEC--V  105 (764)
T ss_pred             eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeE--E
Confidence            45678899999999999999876  146899999999999998444333222                 44555444  4


Q ss_pred             EECCCCCEEEEEeCCcEEEEEEccCCCccc-ceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC--ceee
Q 001490          379 VWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTY  455 (1068)
Q Consensus       379 ~~spdg~~las~~~d~~i~vwd~~~~~~~~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~  455 (1068)
                      +++.......+...|+++.+||.+..+... ....+.....-..|+++.++.+..+++.|+.+..|.++.-.++  +.+.
T Consensus       106 cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~  185 (764)
T KOG1063|consen  106 CVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA  185 (764)
T ss_pred             EEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence            444333333333689999999995544110 1111211222345777788666667888888888888875544  4567


Q ss_pred             EeccCCCcEEEEeeeecCC-ccEEEEEEcCCcEEEEeCCCCC------------------------c-e------EEecC
Q 001490          456 SFEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG------------------------A-R------VDYDA  503 (1068)
Q Consensus       456 ~~~~h~~~v~~i~~~~~~~-~~~l~s~s~dg~i~vwd~~~~~------------------------~-~------~~~~~  503 (1068)
                      .+.||.+.|.+++|..... .-+|+++|.|..||+|.+....                        . .      ..+.+
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            8899999999999986544 5688999999999999764322                        0 0      01347


Q ss_pred             CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEeccc--cccCCeEEEEEecCCCEEEEEECCCeEE
Q 001490          504 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIK  579 (1068)
Q Consensus       504 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~s~dg~i~  579 (1068)
                      |...|.++.|+|.+..|++++.    |.++.+|...+.  --+...+-..  ..........|+|+++.+++-+..|..+
T Consensus       266 HeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  266 HEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             cccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            8889999999999988888886    567999987654  3333332111  1125588999999999999999999999


Q ss_pred             EEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC----ceeeeccccccceeeeEEcCCccc
Q 001490          580 IWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTV  654 (1068)
Q Consensus       580 iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~  654 (1068)
                      +|.... ..........++...|..++|+|.|.+|++.+.|.+-|++-.-..    ..+...+.|...++|+++-     
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v-----  416 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV-----  416 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc-----
Confidence            998332 333444444566788999999999999999999999999865411    2233344566667777664     


Q ss_pred             cccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeec---C---CccccccEEEEEEecCCceEEEe
Q 001490          655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL---P---SKVKANKISRLTYNNGGQAIFAL  728 (1068)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---~---~~~~~~~i~~l~~s~~g~~l~~~  728 (1068)
                                       +....+++|..+.-+|+|+....-...+..+.-   .   .......|..+-.|.+.-..= -
T Consensus       417 -----------------n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e  478 (764)
T KOG1063|consen  417 -----------------NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-E  478 (764)
T ss_pred             -----------------cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-c
Confidence                             224456777777888998864221111110000   0   000122233333333221100 0


Q ss_pred             ecCccE-EEEeccCCccCCCccceeccCCcccCCCCCCceeeec-----CCCCCCCCCeeEEEEecCCCEEEEEeC----
Q 001490          729 ASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND-----TTDSNSQEAVPCFALSKNDAYLFSASG----  798 (1068)
Q Consensus       729 ~~dg~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~l~~s~dg~~l~~~~d----  798 (1068)
                      ..+|.. ..|.-         .........+..|....++....     -...+|..+|.+++.+|+|+++|++..    
T Consensus       479 ~~~G~~~~~~~e---------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~  549 (764)
T KOG1063|consen  479 TNTGGEAAVCAE---------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK  549 (764)
T ss_pred             cccccccceeee---------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc
Confidence            011110 01100         00001111222222222121111     123479999999999999999999961    


Q ss_pred             --CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce----eeeeecccccCeEEEEEcC
Q 001490          799 --GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSD  872 (1068)
Q Consensus       799 --g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~~~~h~~~V~~l~~sp  872 (1068)
                        ..|++|+..+...+..+.+|+-.|+.++||| |+++|++.+.|+++.+|......    .....+.|+.-|++..|+|
T Consensus       550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  550 EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             cceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc
Confidence              3499999999999999999999999999999 99999999999999999886532    1234678999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC----C-EEEEE-eCCeEEEEECC-----
Q 001490          873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----T-RFLLV-HETHLAIYEAE-----  941 (1068)
Q Consensus       873 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg----~-~la~~-~d~~i~vwd~~-----  941 (1068)
                      |++++||+|+|++|++|.........   +... ........|+.+++.|--    . .+++| ..|.|.+|...     
T Consensus       629 de~~FaTaSRDK~VkVW~~~~~~d~~---i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~  704 (764)
T KOG1063|consen  629 DEKYFATASRDKKVKVWEEPDLRDKY---ISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQ  704 (764)
T ss_pred             ccceeEEecCCceEEEEeccCchhhh---hhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccc
Confidence            99999999999999999998753111   1110 111122478888887632    2 45556 66899999955     


Q ss_pred             --Cceee----eeeccCCCcCEEEEEEecC----------CCEEEEEECCCcEEEEEcC
Q 001490          942 --ELTCL----KQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       942 --~~~~~----~~~~~~h~~~v~~l~fs~d----------g~~l~t~~~dg~v~vwd~~  984 (1068)
                        .+...    ..-..+|...|..+.|+|-          ...|++|+.|.+++++++.
T Consensus       705 ~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  705 VTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             ccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence              11110    0112356889999999973          2457999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=302.28  Aligned_cols=295  Identities=17%  Similarity=0.252  Sum_probs=268.8

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      ...++|+||...|.++.|++|.+ .++++|.||.+.|||.-|...++.                   ++-....|..+||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~  105 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY  105 (343)
T ss_pred             eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence            44589999999999999999998 569999999999999998887765                   3336689999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCC---cccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~---~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  457 (1068)
                      +|.|+++|.|+-|+...||++.+..   ..+....+.+|++.+.|+.|.+|+.   |+|++.|.+..+||+++|+.+..|
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence            9999999999999999999998652   2344557899999999999999876   999999999999999999999999


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd  537 (1068)
                      .+|.+.|.++.+.|. +++.+++|+-|+..++||++.+..+..+.+|...|++++|.|+|.-+++|+.    +++.++||
T Consensus       183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD  257 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD  257 (343)
T ss_pred             cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence            999999999999886 7789999999999999999999999999999999999999999999999986    77899999


Q ss_pred             CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      ++....+..|.. ......|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.  ..|.++..+|||.-+++|+
T Consensus       258 lRaD~~~a~ys~-~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe--NRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  258 LRADQELAVYSH-DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE--NRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             ecCCcEEeeecc-CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC--CeeEEEEECCCCcEEEecc
Confidence            999999888884 3355789999999999999999999999999999999999999775  4699999999999999999


Q ss_pred             CCCeEEEEE
Q 001490          618 NENRIKILE  626 (1068)
Q Consensus       618 ~dg~i~iwd  626 (1068)
                      .|.+++||.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-37  Score=323.56  Aligned_cols=482  Identities=16%  Similarity=0.259  Sum_probs=360.0

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  381 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s  381 (1068)
                      ..+++..|++.|.++.|+|... .+.++-.+|.|.|||.++...++.+.+                   .+-+|++..|-
T Consensus         5 ~krk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfi   64 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFI   64 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheee
Confidence            3456677999999999999998 556667789999999999988876332                   56789999999


Q ss_pred             CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccC
Q 001490          382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGH  460 (1068)
Q Consensus       382 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h  460 (1068)
                      +--+++++|+.|..|+||+.++++.++   .+..|.+.|.+++.+|...  +++|+++|-+|++||.+.+ .+.++++||
T Consensus        65 aRknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH  139 (794)
T KOG0276|consen   65 ARKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGH  139 (794)
T ss_pred             eccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCc
Confidence            999999999999999999999998666   7889999999999999998  8999999999999999865 677899999


Q ss_pred             CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC--CCEEEEEeeCCCCceeEEEEeC
Q 001490          461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      ...|.+++|.|. |...+++++-|++|++|.+....+..++.+|...|+++.+-+-  ..+|++++.    |..+++||.
T Consensus       140 ~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDy  214 (794)
T KOG0276|consen  140 EHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDY  214 (794)
T ss_pred             ceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeec
Confidence            999999999987 5679999999999999999999999999999999999999874  469999875    778999999


Q ss_pred             CCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      ++..+++++.||.   ..|..+.|+|.-..+++|++||+++||+..+-++..++...  ...+++++-.+.++.+++|.+
T Consensus       215 Qtk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  215 QTKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             chHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEecc
Confidence            9999999999999   99999999999999999999999999999998888887654  356899999998889999998


Q ss_pred             CCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcc
Q 001490          619 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE  698 (1068)
Q Consensus       619 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  698 (1068)
                      .|.|.+ .+....+...+.                                  +.|+.+           |...      
T Consensus       290 eg~i~v-~lgreeP~vsMd----------------------------------~~gKIi-----------wa~~------  317 (794)
T KOG0276|consen  290 EGSVTV-KLGREEPAVSMD----------------------------------SNGKII-----------WAVH------  317 (794)
T ss_pred             CCcEEE-EccCCCCceeec----------------------------------CCccEE-----------EEcC------
Confidence            887654 332222221111                                  122221           1110      


Q ss_pred             cceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCC-C
Q 001490          699 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN-S  777 (1068)
Q Consensus       699 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  777 (1068)
                                  +.|..+..-+       .+..+                           ++..|+.+ .....+.+ -
T Consensus       318 ------------~ei~~~~~ks-------~~~~~---------------------------ev~DgErL-~LsvKeLgs~  350 (794)
T KOG0276|consen  318 ------------SEIQAVNLKS-------VGAQK---------------------------EVTDGERL-PLSVKELGSV  350 (794)
T ss_pred             ------------ceeeeeecee-------ccCcc---------------------------cccCCccc-cchhhhcccc
Confidence                        0111111100       00000                           11111100 00000000 1


Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee
Q 001490          778 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  857 (1068)
Q Consensus       778 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  857 (1068)
                      .--...++-||+|+++++++||.-.||..-..+.     ...+.-....|++ |....|+-..++.|+++  ++.+..+.
T Consensus       351 eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ks  422 (794)
T KOG0276|consen  351 EIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKS  422 (794)
T ss_pred             ccchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccc
Confidence            1122457889999999999999988887532221     2445667889999 77778878788999998  66666655


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEE
Q 001490          858 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI  937 (1068)
Q Consensus       858 ~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~v  937 (1068)
                      +...-.    +..--.|.+|...+ ++.+++||-++++..     +...-      ..-.+.|+.+|.+++.+.|...++
T Consensus       423 i~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lV-----rrI~v------~~k~v~w~d~g~lVai~~d~Sfyi  486 (794)
T KOG0276|consen  423 IRPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELV-----RRIEV------TSKHVYWSDNGELVAIAGDDSFYI  486 (794)
T ss_pred             cccccc----eeeecCCceEEEEe-CCeEEEEEcccceEE-----EEEee------ccceeEEecCCCEEEEEecCceeE
Confidence            542211    12222355555555 555999999986633     22222      234789999999999988888666


Q ss_pred             EECC
Q 001490          938 YEAE  941 (1068)
Q Consensus       938 wd~~  941 (1068)
                      +...
T Consensus       487 l~~n  490 (794)
T KOG0276|consen  487 LKFN  490 (794)
T ss_pred             EEec
Confidence            6654

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=326.37  Aligned_cols=546  Identities=13%  Similarity=0.161  Sum_probs=406.4

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      ..+.+.|.|++-+.+-- ++|.|   ..|.+|.  .|+.+..                  .+.+|.+.|.-+.  |=|.+
T Consensus        73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~  126 (910)
T KOG1539|consen   73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEH  126 (910)
T ss_pred             CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEe--eecce
Confidence            45778999998877652 43433   4566665  3443322                  1556777777665  34889


Q ss_pred             EEEEeCCcEEEEEEccCC-CcccceEEE-ccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490          387 LGVAYSKHIVQLYAYHGG-SDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  464 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~-~~~~~~~~~-~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  464 (1068)
                      ++++..++.+.||+..++ +.......+ +...+.|+++. +|.---..++.|+.+|.+++||+.+++.+++++++...|
T Consensus       127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I  205 (910)
T KOG1539|consen  127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI  205 (910)
T ss_pred             EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence            999999999999999885 221111122 22222377664 554322248889999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490          465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  544 (1068)
Q Consensus       465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~  544 (1068)
                      +++.-+|.-  ..++.|..+|+|.+++++..+.+..++...+.|++++|..||..+.+.+..   .|.+.+||++..+.+
T Consensus       206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~---~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS---NGDMAFWDLEKKKLI  280 (910)
T ss_pred             eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC---CceEEEEEcCCCeee
Confidence            999876644  489999999999999999999999999888999999999999987766542   456999999998887


Q ss_pred             eEEe-ccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcC--CCe--EEEEEeCCCCCCCCceEEEe-cCCCEEEEEEC
Q 001490          545 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN  618 (1068)
Q Consensus       545 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~  618 (1068)
                      .... .|.   +.+....|.|....+++++.|+.+++|=.+  .|.  .++...  +|..+..++.|. .+|..+.+++.
T Consensus       281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~  355 (910)
T KOG1539|consen  281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ  355 (910)
T ss_pred             eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence            7776 444   789999999999999999999999988554  442  333333  345567889987 68999999999


Q ss_pred             CCeEEEEECCCCceeeeccc------------------cccceeeeEEcCCccccccccccCeeeecCCC-CCCccccee
Q 001490          619 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPEIS  679 (1068)
Q Consensus       619 dg~i~iwd~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s  679 (1068)
                      |++++.+++.....-+.+..                  ...+|..+++.                  ... ....+.++.
T Consensus       356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~------------------~~RE~~W~Nv~~~  417 (910)
T KOG1539|consen  356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE------------------NAREKEWDNVITA  417 (910)
T ss_pred             CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc------------------cchhhhhcceeEE
Confidence            99999988763311111110                  01112222211                  111 223344555


Q ss_pred             ecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCccc
Q 001490          680 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  759 (1068)
Q Consensus       680 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~  759 (1068)
                      .-.+...+.|+......++...-.-+.......+.+++.++-|++.+.|.+.|.|-+|+++.+-                
T Consensus       418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi----------------  481 (910)
T KOG1539|consen  418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI----------------  481 (910)
T ss_pred             ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe----------------
Confidence            5566778999987665544332222222245678999999999999999999999999876542                


Q ss_pred             CCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEE
Q 001490          760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG  838 (1068)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg  838 (1068)
                            ....+ ...+.|..+|+.++...-++.+++++ +|.+.+||..+...+..++ -...++++..+. ...++|++
T Consensus       482 ------~r~sf-~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~  552 (910)
T KOG1539|consen  482 ------HRKSF-GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIA  552 (910)
T ss_pred             ------eeccc-ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhh
Confidence                  11111 01234899999999999888888887 8999999999888777776 455788888888 77899999


Q ss_pred             ECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEE
Q 001490          839 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  918 (1068)
Q Consensus       839 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  918 (1068)
                      ..|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.......+.         .+...+
T Consensus       553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sl  623 (910)
T KOG1539|consen  553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSL  623 (910)
T ss_pred             cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------Ccceee
Confidence            99999999999999999999999999999999999999999999999999999997755533332         258899


Q ss_pred             EEeeCCCEEEEE-eC-CeEEEEECC
Q 001490          919 QFHKDQTRFLLV-HE-THLAIYEAE  941 (1068)
Q Consensus       919 ~~spdg~~la~~-~d-~~i~vwd~~  941 (1068)
                      .|||.|.+||+. .| ..|++|.=.
T Consensus       624 s~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  624 SFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             EECCCCCEEEEEEecCceEEEEEch
Confidence            999999999994 33 579999744

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=294.66  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=266.0

Q ss_pred             eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      +|+||.+.|.++.|++|+++|++++.||.+.|||.-+.....   .++-....|..++|+|.|+  ++++||-|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            488999999999999999999999999999999998875443   4556778899999999999  89999999999999


Q ss_pred             ECCCC------ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCE
Q 001490          447 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR  519 (1068)
Q Consensus       447 d~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~  519 (1068)
                      ++.+.      +..+.+.+|.+.+.++.|..   ...|++++.|.+..+||+++++....+.+|.+.|.+++++| +++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            99865      34567899999999999865   34899999999999999999999999999999999999999 9999


Q ss_pred             EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCC
Q 001490          520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  599 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  599 (1068)
                      +++|+.    |...++||++.+..+++|.+|+   ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus       202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            999987    6679999999999999999999   999999999999999999999999999999999999998887778


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCccccee
Q 001490          600 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  679 (1068)
Q Consensus       600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  679 (1068)
                      +|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+.|.++..+                      |||.-+++
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T  332 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT  332 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence            89999999999999999999999999999999999999999999999996                      77888999


Q ss_pred             ecccccceeec
Q 001490          680 VEAENKSEVEK  690 (1068)
Q Consensus       680 ~~~d~~i~~wd  690 (1068)
                      ++.|.++|+|.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.7e-37  Score=286.02  Aligned_cols=294  Identities=17%  Similarity=0.273  Sum_probs=252.4

Q ss_pred             CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEc
Q 001490          322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY  401 (1068)
Q Consensus       322 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~  401 (1068)
                      ..-+|++++.|.+|++|...+|.+.++                   +......|..+...||+++||+++... |++||+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~   68 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL   68 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence            346899999999999999999999976                   444678999999999999999997654 999999


Q ss_pred             cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEE
Q 001490          402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  481 (1068)
Q Consensus       402 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~  481 (1068)
                      .++... +..++.+|...|+++.|..||+  ++++|++||+++|||++...+.+.++ |..+|+++.++|  +...|+++
T Consensus        69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~  142 (311)
T KOG0315|consen   69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISG  142 (311)
T ss_pred             cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEee
Confidence            998754 5568999999999999999999  89999999999999999977766665 789999999987  55689999


Q ss_pred             EcCCcEEEEeCCCCCceEEec-CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe------eeeEEecccccc
Q 001490          482 SVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH  554 (1068)
Q Consensus       482 s~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~  554 (1068)
                      ..+|.|++||+....+...+. .....|.+++..|||.+++.+..    .|..++|++-++.      ++.+++.|.   
T Consensus       143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---  215 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---  215 (311)
T ss_pred             cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence            999999999999887655443 34458999999999999999875    6679999987643      455566666   


Q ss_pred             CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee
Q 001490          555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  634 (1068)
Q Consensus       555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1068)
                      +.+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+.
T Consensus       216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             ceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence            88999999999999999999999999999988 33344444455679999999999999999999999999999999999


Q ss_pred             eccccccceeeeEEc
Q 001490          635 AAGVLSDNLRKLSVN  649 (1068)
Q Consensus       635 ~~~~~~~~i~~~~~~  649 (1068)
                      ...+|.....|++..
T Consensus       295 qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  295 QYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCcccccEEEEee
Confidence            999998877776653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=285.84  Aligned_cols=295  Identities=16%  Similarity=0.189  Sum_probs=249.2

Q ss_pred             ccccccEEEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490          707 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  785 (1068)
Q Consensus       707 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  785 (1068)
                      .+|.+.|..++..+. ...++.++.|..+.+|++...                 |...|.....  +.  +|...|..++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~   70 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV   70 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence            459999999999887 456777888999999998764                 3334433333  33  4999999999


Q ss_pred             EecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecc--cc
Q 001490          786 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS  862 (1068)
Q Consensus       786 ~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~--h~  862 (1068)
                      .++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+.... +..++..  |.
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~  148 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHR  148 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCc
Confidence            999999999998 89999999999999999999999999999999 8999999999999999999854 4444433  37


Q ss_pred             cCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEE
Q 001490          863 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  939 (1068)
Q Consensus       863 ~~V~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd  939 (1068)
                      +.|.++.|+|+  ..+++++|.|++|++||+.+     .+..+.+.+|..   .++.+++||||.++++ +.|+.+.+||
T Consensus       149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence            89999999998  78999999999999999998     335566667665   8999999999999999 6889999999


Q ss_pred             CCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490          940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus       940 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
                      ++.++.+..  .+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.+....+ ........++.++|++ ||
T Consensus       221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG  295 (315)
T KOG0279|consen  221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG  295 (315)
T ss_pred             ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence            999999764  3578999999999987666655 56679999999999998887554433 2345567889999999 79


Q ss_pred             CEEEEEeCCCcEEEEeCC
Q 001490         1020 TQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1020 ~~l~~~~~dg~i~~w~~~ 1037 (1068)
                      +.|.+|.+||.|++|.+.
T Consensus       296 ~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEeeecCCcEEEEEee
Confidence            999999999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-35  Score=305.17  Aligned_cols=464  Identities=15%  Similarity=0.216  Sum_probs=345.0

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +..++..|.++.|+|....++++-.+|.|.|||.++...++   .+.....+|.+..|-+--+  ++++|++|..|+||+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            44588999999999999999999999999999999988776   5666778999999998777  899999999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC-CceEEecCCCCcEEEEEEcc-CCCEEEEEee
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  525 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~  525 (1068)
                      ..|++.++.|..|.+.|++++.+|.  ..+++++|.|-+|++||++.. .+.+.+.+|.+-|.+++|.| |.+.+++++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt--~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPT--LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCC--CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            9999999999999999999999985  469999999999999999875 45678999999999999999 6678999886


Q ss_pred             CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC--CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490          526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                          |++|++|.+.+..+..++.+|.   ..|+++.+-+-  ..++++|++|.+|+|||.++..+++++.+|.+  .|..
T Consensus       162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~  232 (794)
T KOG0276|consen  162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF  232 (794)
T ss_pred             ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence                6679999999999999999999   89999999764  47999999999999999999999999997754  5999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490          604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  683 (1068)
Q Consensus       604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  683 (1068)
                      +.|+|.-..+++|+.||+++||+..+-+...++.-..++++                                       
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW---------------------------------------  273 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW---------------------------------------  273 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEE---------------------------------------
Confidence            99999999999999999999999887655555443333333                                       


Q ss_pred             ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCC
Q 001490          684 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  763 (1068)
Q Consensus       684 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  763 (1068)
                                                     +++..+.+..++.|..+|.+.+ +                         
T Consensus       274 -------------------------------~I~~~k~~~~i~vG~Deg~i~v-~-------------------------  296 (794)
T KOG0276|consen  274 -------------------------------CIAAHKGDGKIAVGFDEGSVTV-K-------------------------  296 (794)
T ss_pred             -------------------------------EEeecCCCCeEEEeccCCcEEE-E-------------------------
Confidence                                           3444444444555555544433 0                         


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EccCceeEE----EecCCCCCeEEEEEeCCC
Q 001490          764 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD  831 (1068)
Q Consensus       764 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d  831 (1068)
                                   -......+..++.|+.+-+...  -.+.+-      ++..|+++.    .+-...-....++-|| +
T Consensus       297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N  362 (794)
T KOG0276|consen  297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N  362 (794)
T ss_pred             -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence                         0111122333344433322211  111111      223333221    1111111234678899 8


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccC
Q 001490          832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  911 (1068)
Q Consensus       832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  911 (1068)
                      |+++++++ ||.-.||..-.-+     ..+.+.-....|++|.+..++--.++.|+++  ++.+..+     ....    
T Consensus       363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k-----si~~----  425 (794)
T KOG0276|consen  363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK-----SIRP----  425 (794)
T ss_pred             CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc-----cccc----
Confidence            98888665 8888888632211     1244556778999998888888778889988  4433222     1110    


Q ss_pred             CCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490          912 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       912 ~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd  982 (1068)
                         -..+.+--.|.+|.+..++.+++||.++++.++.+-.    ....+.|+.+|.+++.++.|. .++..
T Consensus       426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence               0112333456777778899999999999999987432    456789999999988887664 44443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=312.98  Aligned_cols=583  Identities=16%  Similarity=0.233  Sum_probs=404.9

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      +..+..|..++|+|... .+.++-..|.|.+||..-+.++..                   +.+|.++|..++|+|++.+
T Consensus         6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl   65 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL   65 (1202)
T ss_pred             hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence            44566899999999988 667788889999999999998876                   7789999999999999999


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  466 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  466 (1068)
                      +++|+.|..|+||+.++.+++.   ++.||.+.|..+.|++.-.  +++++++|.+|+|||+.+++++..++||...|.|
T Consensus        66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC  140 (1202)
T ss_pred             EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence            9999999999999999987665   7889999999999999888  8999999999999999999999999999999999


Q ss_pred             EeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001490          467 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  546 (1068)
Q Consensus       467 i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  546 (1068)
                      ..|+|.+|  .++++|-|.+||+||+...+....-.+      ++.-...+..+.           .-++-...--....
T Consensus       141 AqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  141 AQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV  201 (1202)
T ss_pred             eccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence            99999765  999999999999999876544332211      000001111110           01111111223456


Q ss_pred             EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490          547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  626 (1068)
Q Consensus       547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  626 (1068)
                      +.||.   ..|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...+|...|.++.|+|...++++.+.|++|++||
T Consensus       202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            78888   889999999999999999999999999998766555555556677899999999999999999999999999


Q ss_pred             CCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCC-----CCCcccceeecccccceeecccccCCcccce
Q 001490          627 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS  701 (1068)
Q Consensus       627 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  701 (1068)
                      +.....+++++...++.+.++.+|.....+.|-..|.+.|.-..     .-.++.+.-.- |..|+-+|+.+........
T Consensus       279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~  357 (1202)
T KOG0292|consen  279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS  357 (1202)
T ss_pred             cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence            99999999999999999999999999999988888887774332     22344444443 7889999988755555544


Q ss_pred             eecCCccccccEEEEEEecCCceEEEee--cCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCC
Q 001490          702 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  779 (1068)
Q Consensus       702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1068)
                      +..+.. ...+..++.++|....++.++  .+|...++.++........            ....       .    ...
T Consensus       358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~------------~~~~-------~----k~t  413 (1202)
T KOG0292|consen  358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD------------GKDV-------K----KGT  413 (1202)
T ss_pred             ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC------------chhh-------h----cCC
Confidence            443322 345678899999877666554  3467777766543211000            0000       0    111


Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  859 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~  859 (1068)
                      ...++-...++-.+..-++..+.+-++.. +..+.+... .....+-+.- .|.+|+.  ....|.+||++..+.+..++
T Consensus       414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK  488 (1202)
T ss_pred             CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence            22223332222222222234444444432 122222211 2333444444 5655553  34579999999887777766


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEE
Q 001490          860 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  939 (1068)
Q Consensus       860 ~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd  939 (1068)
                        ..+|.-+.||+|..+++--+. .+|.|.+.+-      ..+.......    +|-+-+|..+|-+|.+..+.-=  |-
T Consensus       489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL------~l~~sihEti----riksgawde~gVfiYtT~nHik--Ya  553 (1202)
T KOG0292|consen  489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKL------ELLCSIHETI----RIKSGAWDEDGVFIYTTLNHIK--YA  553 (1202)
T ss_pred             --cCceeEEEEcCccchhhhccc-ceEEEEecch------hheecchhee----EeeeceeccCceEEEEehhhhh--hh
Confidence              456899999999998887664 4588887653      1222222222    4777888888888877543311  11


Q ss_pred             CCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001490          940 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE  987 (1068)
Q Consensus       940 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~  987 (1068)
                      +.+|.  .+++ +   ..++.-  +--.|..++.-..|+.+.+.+++.-+
T Consensus       554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptE  597 (1202)
T KOG0292|consen  554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTE  597 (1202)
T ss_pred             hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHH
Confidence            11111  1111 1   112221  22356777777788888888777644

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.3e-36  Score=301.01  Aligned_cols=345  Identities=19%  Similarity=0.268  Sum_probs=290.8

Q ss_pred             CccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC--CcceeeeeeeeeeccccccceeeeeecCCCcce
Q 001490          298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  375 (1068)
Q Consensus       298 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  375 (1068)
                      .|....+.+. |+.+|.+.+|+|-..-++|+|+.|-+.++|++..  +.......+     ..|...--.  -......|
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV  238 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV  238 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence            6777777777 9999999999998766889999999999999874  111110000     000000000  01124689


Q ss_pred             EEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490          376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                      ++++|+.+|..||+|+.||.+++|+...+. +.   ++..|.++|.++.|+.+|.  ++++++.|+++.+||..+|...+
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence            999999999999999999999999998753 33   6788999999999999999  89999999999999999999999


Q ss_pred             EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       456 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      .+.-|..+-..+.|-.   ...+++.+.||.|+++.+....+..++.+|.++|.++.|.|.|.+|++++.    |++++|
T Consensus       313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki  385 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI  385 (524)
T ss_pred             eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence            9999998866666643   247999999999999999999999999999999999999999999999986    778999


Q ss_pred             EeCCCCeeeeEEeccccccCCeEEEEEecCC---------CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490          536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  606 (1068)
Q Consensus       536 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  606 (1068)
                      |+.........+..|.   ..|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|  ..+|.+++|
T Consensus       386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf  460 (524)
T KOG0273|consen  386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF  460 (524)
T ss_pred             eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence            9999998888999988   899999999964         47889999999999999999999999755  457999999


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccc
Q 001490          607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  686 (1068)
Q Consensus       607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  686 (1068)
                      +|+|+++|+|+.||.|.+|+.++++.++...                                                 
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------------------------------------------------  491 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------------------------------------------------  491 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence            9999999999999999999999988776654                                                 


Q ss_pred             eeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEec
Q 001490          687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  739 (1068)
Q Consensus       687 ~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~  739 (1068)
                                            ..+.|..+.|+.+|..+.++..+|.+.+.|+
T Consensus       492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                                  2345778899999999999999988888764

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=297.10  Aligned_cols=293  Identities=22%  Similarity=0.334  Sum_probs=268.3

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      .+..+.|.+|...|+.+-|+|+-. ++++++.|++|++||..+|+....                   ++||...|..++
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~  157 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDIS  157 (406)
T ss_pred             CCchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEE
Confidence            356777889999999999999986 889999999999999999999765                   889999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  459 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  459 (1068)
                      |+..|++||+++.|-.+.+||.++-  .++...+.+|...|.+++|-|.|.  ++++++.|.+|+.|++.+|.+++++.+
T Consensus       158 ~~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~  233 (406)
T KOG0295|consen  158 FDASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPG  233 (406)
T ss_pred             EecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccC
Confidence            9999999999999999999999873  233336779999999999999998  899999999999999999999999999


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCC---------------CEEEEEe
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCG  524 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~  524 (1068)
                      |...|..+..  ..||.++++++.|.+|++|-+.++.+...+..|+.++.+++|.|..               +++.+++
T Consensus       234 h~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  234 HSEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             chHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            9999999887  4589999999999999999999999999999999999999997732               4666666


Q ss_pred             eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceE
Q 001490          525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  604 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  604 (1068)
                      .    |++|++||+.++.++.++.+|.   ..|..++|+|.|+||+++.+|+++++||+++++++..+..+.+.  +.++
T Consensus       312 r----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf--vt~l  382 (406)
T KOG0295|consen  312 R----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF--VTSL  382 (406)
T ss_pred             c----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce--eEEE
Confidence            5    7789999999999999999999   99999999999999999999999999999999999999987664  8999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEC
Q 001490          605 CFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       605 ~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      .|+.+..++++|+-|.++++|.-
T Consensus       383 Dfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  383 DFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ecCCCCceEEeccccceeeeeec
Confidence            99999999999999999999963

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=8.8e-33  Score=280.91  Aligned_cols=536  Identities=12%  Similarity=0.145  Sum_probs=382.9

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      .+...-++|+. -=..+-+-|.|..+..++   +.+.+++++...+..                    +.+|+..|.|++
T Consensus        56 LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~  111 (626)
T KOG2106|consen   56 LEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMA  111 (626)
T ss_pred             eEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEe
Confidence            34445556664 334566788887444444   567777776533222                    678999999999


Q ss_pred             ECCCCCEEEEEeCCc--------EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEE--EEeCCCcEEEEECC
Q 001490          380 WSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVI--TCGDDKTIKVWDAV  449 (1068)
Q Consensus       380 ~spdg~~las~~~d~--------~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~--s~~~d~~i~iwd~~  449 (1068)
                      .+||.-.+|+|-..|        .+++||..+-..+.   .+......|.|++||+-..-.++.  --+.+..+.+||..
T Consensus       112 vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq  188 (626)
T KOG2106|consen  112 VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ  188 (626)
T ss_pred             ecCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhch
Confidence            999999999774333        59999987654333   566677789999999853321333  33556679999999


Q ss_pred             CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE---ecCC-CCcEEEEEEccCCCEEEEEee
Q 001490          450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSCGT  525 (1068)
Q Consensus       450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---~~~~-~~~i~~~~~s~d~~~l~~~~~  525 (1068)
                      .+......+..+..|....|+|..  ..|+.....|.+.+|+++.+.....   +..+ ...|.|++|.++|..+- +  
T Consensus       189 k~~~~~~vk~sne~v~~a~FHPtd--~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g--  263 (626)
T KOG2106|consen  189 KKAKLGPVKTSNEVVFLATFHPTD--PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G--  263 (626)
T ss_pred             hhhccCcceeccceEEEEEeccCC--CcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e--
Confidence            998888888788889999999863  3455556678999999887765443   2222 25799999999998664 3  


Q ss_pred             CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEE
Q 001490          526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  605 (1068)
Q Consensus       526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  605 (1068)
                        |.++.|.||+..+.+..+....|.   +.|.+++...+|. |++|+.|+.|..|| ..-+.++..+.+.....+..++
T Consensus       264 --DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  264 --DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             --cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEe
Confidence              237789999998887777766666   9999999999885 55699999999999 5555555555555555566555


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccc
Q 001490          606 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  685 (1068)
Q Consensus       606 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  685 (1068)
                      =..  .-|++|+..+.|..=.++++-.+.                                                   
T Consensus       337 e~~--~di~vGTtrN~iL~Gt~~~~f~~~---------------------------------------------------  363 (626)
T KOG2106|consen  337 EGK--GDILVGTTRNFILQGTLENGFTLT---------------------------------------------------  363 (626)
T ss_pred             cCC--CcEEEeeccceEEEeeecCCceEE---------------------------------------------------
Confidence            332  227777766665443333321111                                                   


Q ss_pred             ceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCC
Q 001490          686 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP  765 (1068)
Q Consensus       686 i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (1068)
                                          ..+|......++..|+...+++++.|+.+++|+  ..+             ..|.     
T Consensus       364 --------------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt-----  403 (626)
T KOG2106|consen  364 --------------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWT-----  403 (626)
T ss_pred             --------------------EEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEE-----
Confidence                                023556677788888888899999999999997  111             1121     


Q ss_pred             ceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeE
Q 001490          766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  844 (1068)
Q Consensus       766 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  844 (1068)
                          ..     -..+..|+.|+|.| .+|.|. .|...+.|+++...+..-. ...++++++|+| +|.+||.|+.|+.|
T Consensus       404 ----~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  404 ----KI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHI  471 (626)
T ss_pred             ----EE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeE
Confidence                11     35678899999999 888887 7999999999955554444 488999999999 99999999999999


Q ss_pred             EEEEcCCc-eeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeee--------------ecCCCc
Q 001490          845 LIYNARSS-EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--------------QTPDGV  908 (1068)
Q Consensus       845 ~iwd~~~~-~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~  908 (1068)
                      +||.+... ...... +.|..+|+.+.||+|+++|.+.+.|-.|-.|.-..  +......              ....+.
T Consensus       472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~ts~kDvkW~t~~c~lGF~v~g~s  549 (626)
T KOG2106|consen  472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQITSVKDVKWATYTCTLGFEVFGGS  549 (626)
T ss_pred             EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--CcccceecceeeeeeEEEEEEEEeccc
Confidence            99998754 332222 22448999999999999999999999999994322  1111110              111111


Q ss_pred             ccCCCCceEEEEeeCCCEEEEEe-CCeEEEEECCCcee--eeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001490          909 MTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA  983 (1068)
Q Consensus       909 ~~~~~~v~~~~~spdg~~la~~~-d~~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~  983 (1068)
                        ...-+..++-|.+++++|++. .|+|++|...--+.  ......+|++.|++++|+.+...+++.+.|.+|..|++
T Consensus       550 --~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  550 --DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             --CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence              113466677778888888864 57899998863332  23336789999999999999999999999999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.6e-35  Score=288.43  Aligned_cols=336  Identities=15%  Similarity=0.187  Sum_probs=290.9

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ...+.++..|++.|.+++.+|+.+ ++|||+.|....||+..+|+....                   +.+|+..|+++.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~  113 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS  113 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence            445788999999999999999775 999999999999999999997765                   889999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  459 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  459 (1068)
                      ||.||.+||+|+.+|.|.||+..++....   .+......+.-+.|+|.+.  +|+.|+.||.+.+|.+.++...+.+.|
T Consensus       114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence            99999999999999999999999987554   4445567788999999988  899999999999999999888899999


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC-CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      |..++++=.|.|  +|+.++++..||+|++|+..+..+...+... .....++.++.++..++.|..    ++.+++-+.
T Consensus       189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~  262 (399)
T KOG0296|consen  189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN  262 (399)
T ss_pred             CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence            999999999976  7899999999999999999999988877643 346778899999999988875    556888888


Q ss_pred             CCCeeeeEEec--------cccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490          539 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       539 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      .+|+.+....+        +......|.++.++..-...++|+-||+|.|||+...++.+.....   .+|..+.|-+ .
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t  338 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T  338 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence            88888777663        2211233455555666677889999999999999998888887655   3489999998 7


Q ss_pred             CEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeec
Q 001490          611 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  690 (1068)
Q Consensus       611 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd  690 (1068)
                      .+|++++.+|.|+.||.++++++....+|...|.+++++                      |+.+++++++.|++.++|+
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence            899999999999999999999999999999999999996                      7889999999999999987


Q ss_pred             cc
Q 001490          691 PL  692 (1068)
Q Consensus       691 ~~  692 (1068)
                      ..
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            53

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=283.84  Aligned_cols=339  Identities=18%  Similarity=0.228  Sum_probs=288.1

Q ss_pred             EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEe
Q 001490          412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  491 (1068)
Q Consensus       412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd  491 (1068)
                      .|..|+..|.+++.+|+.+  +++|||.|..-.+|++.+|..+..+.+|...|+++.|+.  +|.+|++|+.+|.|++|.
T Consensus        59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence            6789999999999999877  899999999999999999999999999999999999976  888999999999999999


Q ss_pred             CCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE
Q 001490          492 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  571 (1068)
Q Consensus       492 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  571 (1068)
                      ..++.....+......+.-+.|+|.+..|++|+.    ++.+.+|.+.++...+.+.||.   .++++-.|.|+|+++++
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence            9999999998878888999999999999999986    6679999999988889999988   99999999999999999


Q ss_pred             EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCC
Q 001490          572 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  651 (1068)
Q Consensus       572 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  651 (1068)
                      +..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+++-+..+++.+....+             
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-------------  273 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-------------  273 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence            99999999999999999999875543 3467899999999999999999888877665543322110             


Q ss_pred             ccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC
Q 001490          652 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  731 (1068)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  731 (1068)
                                                                                           .+..+-.... 
T Consensus       274 ---------------------------------------------------------------------~~~~l~~~~e-  283 (399)
T KOG0296|consen  274 ---------------------------------------------------------------------TVPELKPSQE-  283 (399)
T ss_pred             ---------------------------------------------------------------------CCccccccch-
Confidence                                                                                 0000000000 


Q ss_pred             ccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCce
Q 001490          732 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK  810 (1068)
Q Consensus       732 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~  810 (1068)
                                                                  .....|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus       284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                        0123344445555667778888 8999999998776


Q ss_pred             eEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       811 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      ....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|++
T Consensus       320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            655554 888899999986  56889999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 001490          891 VD  892 (1068)
Q Consensus       891 ~~  892 (1068)
                      +.
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            75

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=267.95  Aligned_cols=295  Identities=17%  Similarity=0.262  Sum_probs=252.3

Q ss_pred             cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe--eeeEEeccccc
Q 001490          476 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ  553 (1068)
Q Consensus       476 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~  553 (1068)
                      -+|++++.|.+||+|...++.+..++.-..+.|+.+.++||++.|++++     ...|++||+++++  ++.+|.+|.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~--   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT--   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence            4899999999999999999999999999999999999999999999986     4569999999865  588999998  


Q ss_pred             cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCcee
Q 001490          554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  633 (1068)
Q Consensus       554 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1068)
                       ..|.++.|..+|+++++|++||+++|||++.....+.+...   .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus        84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence             89999999999999999999999999999996666666543   56999999999999999999999999999876433


Q ss_pred             eeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccE
Q 001490          634 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI  713 (1068)
Q Consensus       634 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i  713 (1068)
                      ..+-                                                                   |+  ....|
T Consensus       160 ~~li-------------------------------------------------------------------Pe--~~~~i  170 (311)
T KOG0315|consen  160 HELI-------------------------------------------------------------------PE--DDTSI  170 (311)
T ss_pred             cccC-------------------------------------------------------------------CC--CCcce
Confidence            2221                                                                   11  33568


Q ss_pred             EEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001490          714 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL  793 (1068)
Q Consensus       714 ~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  793 (1068)
                      .++.+.|||..++++...|..++|++.....           .....|     +.    ..+.|...+..+.+|||+++|
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------~s~l~P-----~~----k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------ASELEP-----VH----KFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------cccceE-----hh----heecccceEEEEEECCCCcEE
Confidence            8999999999999999999999999765221           000011     01    112488999999999999999


Q ss_pred             EEEe-CCeEEEEEccCc-eeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEc
Q 001490          794 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  871 (1068)
Q Consensus       794 ~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s  871 (1068)
                      |+++ |.+++||++++. +....+.+|...+..++||. |+++|++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9998 899999999988 66778899999999999999 99999999999999999999999999999999888888764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.2e-35  Score=283.96  Aligned_cols=297  Identities=18%  Similarity=0.259  Sum_probs=268.0

Q ss_pred             CccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490          298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  377 (1068)
Q Consensus       298 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  377 (1068)
                      .|-.+.+.+.+|.+.|.|+++.|-++ ++++|+.|++|+|||+.+|++..+                   +.||-..|..
T Consensus       139 apwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~  198 (460)
T KOG0285|consen  139 APWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRG  198 (460)
T ss_pred             CcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeee
Confidence            45678899999999999999999876 789999999999999999998876                   8899999999


Q ss_pred             EEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490          378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       378 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  457 (1068)
                      +++|+--.||.+++.|+.|+-||++.++.++   .+.||-..|.|++..|.-+  .|++|+.|.++++||+++...+..+
T Consensus       199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l  273 (460)
T KOG0285|consen  199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL  273 (460)
T ss_pred             eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence            9999999999999999999999999998877   6779999999999999988  8999999999999999999999999


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd  537 (1068)
                      .||..+|.++.+.+.  ...+++||.|++|++||+..++....+..|...+.+++.+|....+++++.+     .|.-|+
T Consensus       274 ~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w~  346 (460)
T KOG0285|consen  274 SGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQWK  346 (460)
T ss_pred             cCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceecc
Confidence            999999999988654  3489999999999999999999999999999999999999999999998753     499999


Q ss_pred             CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEe---CCC---CCCCCceEEEecCCC
Q 001490          538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKNGT  611 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~~~  611 (1068)
                      +..|..+..+.+|.   ..|++++.+.|+ ++++|+++|.|.+||.++|...+...   ..+   ....|.+.+|...|.
T Consensus       347 ~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~  422 (460)
T KOG0285|consen  347 LPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS  422 (460)
T ss_pred             CCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence            99999999988888   899999998876 88999999999999999987665542   111   123578899999999


Q ss_pred             EEEEEECCCeEEEEECCCC
Q 001490          612 LLAVIANENRIKILETPES  630 (1068)
Q Consensus       612 ~l~~~~~dg~i~iwd~~~~  630 (1068)
                      .|+++..|.+|++|.-++.
T Consensus       423 rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  423 RLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             eEEeccCCcceEEEecccc
Confidence            9999999999999986643

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.1e-31  Score=278.71  Aligned_cols=550  Identities=12%  Similarity=0.118  Sum_probs=390.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccc-cccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      ..|.++|||.+.+.||.+-.+|.|.+|++..+-...  ..+.++ ...|.+++|++.++   |++.+.+|.|.-||+.++
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEecccC
Confidence            589999999999999999999999999999864332  355555 45899999997665   889999999999999999


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE--EecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG  529 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~  529 (1068)
                      +.+..+....+.|++++.++..  ..++.|++||.+...+........  .+....+.+.+++|+|++..++.|+.    
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~----  174 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI----  174 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc----
Confidence            9999999999999999998854  589999999977777776665544  34445678999999999999999986    


Q ss_pred             ceeEEEEeCCCCeeeeEEe----ccc-cccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceE
Q 001490          530 ESFLVEWNESEGAIKRTYQ----GLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  604 (1068)
Q Consensus       530 ~~~i~~wd~~~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  604 (1068)
                      |+.|++||..++..+....    +.. ....-|+++.|-.+ ..|++|...|+|.+||...+.+++....+.  ..|.++
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~L  251 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLAL  251 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--cceeEE
Confidence            7789999999988766222    111 01234778888755 479999999999999999999999988774  459999


Q ss_pred             EEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccc
Q 001490          605 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  684 (1068)
Q Consensus       605 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  684 (1068)
                      +..+++..+++++.|+.|..+...++..-                                                   
T Consensus       252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~---------------------------------------------------  280 (691)
T KOG2048|consen  252 AVADNEDRVFSAGVDPKIIQYSLTTNKSE---------------------------------------------------  280 (691)
T ss_pred             EEcCCCCeEEEccCCCceEEEEecCCccc---------------------------------------------------
Confidence            99999999999999999988877654210                                                   


Q ss_pred             cceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCC
Q 001490          685 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  764 (1068)
Q Consensus       685 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  764 (1068)
                          |-.           ..+...|...+++++..++  .+++++.|..+.+-.....              +..+-   
T Consensus       281 ----wv~-----------~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~--------------~~~~h---  326 (691)
T KOG2048|consen  281 ----WVI-----------NSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREF--------------KNMDH---  326 (691)
T ss_pred             ----eee-----------eccccCCcccceeeeeecc--eEEecceeeEEEEcccccc--------------Cchhh---
Confidence                100           0011237778888888877  6888888887776432210              00000   


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCcee---------EEEecCCCCCeEEEEEeCCCCCEE
Q 001490          765 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVI  835 (1068)
Q Consensus       765 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~l  835 (1068)
                        .+...+    ...  .-+...|..++++...+..+.+|.+.+...         .+........|.|.+.|| +|+++
T Consensus       327 --~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~I  397 (691)
T KOG2048|consen  327 --RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLI  397 (691)
T ss_pred             --hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEE
Confidence              000000    011  123455666677777788888998865521         222233556899999999 99999


Q ss_pred             EEEECCCeEEEEEcCCceeee-----eecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeeeeeeecCCCcc
Q 001490          836 AIGMDDSTILIYNARSSEVIS-----KLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVM  909 (1068)
Q Consensus       836 asg~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  909 (1068)
                      |.+. -..++||.+.....+.     ......-....+.|+-|+..++.++ .+..+.+.++++........++.. ...
T Consensus       398 a~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~  475 (691)
T KOG2048|consen  398 AIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKC  475 (691)
T ss_pred             EEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCC
Confidence            9876 3458888887532221     1222334577889999999888888 677888888887654443333322 122


Q ss_pred             cCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCc
Q 001490          910 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLE  987 (1068)
Q Consensus       910 ~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~~  987 (1068)
                         +.|..++.||||++||+ +..+.|.+|++++++.-.... .-...++.++|+| +-..|+.+..++.|.-+|++..+
T Consensus       476 ---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  476 ---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             ---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence               47999999999999998 789999999999887654321 2357899999995 55678888899999999996555


Q ss_pred             EEEEecccc-ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490          988 VQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus       988 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                      +-....... .+|.......-....+.|+|.+ ...+...+.+-+++.|.+
T Consensus       552 l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  552 LTRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             hhhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence            332222111 1111111111223567788854 444444455566777664

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=266.01  Aligned_cols=292  Identities=22%  Similarity=0.336  Sum_probs=240.4

Q ss_pred             eeeecccCCCCceEEEEcCC-CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          302 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spd-g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      ..+++.+|++.|+.++|+|- |. +||+|+.|+.|+||+...+.-...               +..+-.+|+..|+++||
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence            56788999999999999998 76 899999999999999986433221               12224579999999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC---ceeeEe
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF  457 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~  457 (1068)
                      +|.|+|||+++.|.++.||.-..++ ......+.||...|.|++|+++|.  +|++++.|+.|-||.+..+   .++..+
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL  146 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL  146 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence            9999999999999999999887654 555668999999999999999999  8999999999999998754   456788


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC---CceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                      +.|...|..+.|+|..+  +|++++.|.+|++|+-...   .+...+.++...|.+++|++.|..|++++.    +++++
T Consensus       147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~  220 (312)
T KOG0645|consen  147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS  220 (312)
T ss_pred             ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence            99999999999999765  9999999999999986632   357788899999999999999999999986    67899


Q ss_pred             EEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCe------EEEEEeCCCCCCCCceEEEec
Q 001490          535 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       535 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      ||-..+.     +.+.  +...++.+.|.  ...|++++.|+.|++|.-...-      .+... .+.|...|+++.|+|
T Consensus       221 Iw~~~~~-----~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  221 IWRLYTD-----LSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP  290 (312)
T ss_pred             eeeeccC-----cchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence            9975422     2221  24778999998  4579999999999999766421      11111 122344799999999


Q ss_pred             C-CCEEEEEECCCeEEEEECC
Q 001490          609 N-GTLLAVIANENRIKILETP  628 (1068)
Q Consensus       609 ~-~~~l~~~~~dg~i~iwd~~  628 (1068)
                      . ..+|+++++||.+++|.+.
T Consensus       291 ~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  291 KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCceeecCCCceEEEEEec
Confidence            4 7899999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-32  Score=296.15  Aligned_cols=578  Identities=14%  Similarity=0.171  Sum_probs=396.9

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +...+..|..++|+|....++++-..|.|++||..-+.++.   .+.+|.++|..++|+|++.  ++++||+|..|++|+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            34466789999999999999999999999999999998777   6789999999999999999  999999999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      ..+.+++.++.||-+.|+.+.|++.  -.+++++|.|.+|++|++.+.+++..+.+|.+-|.|..|+|....+++++-  
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--  155 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--  155 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence            9999999999999999999999874  469999999999999999999999999999999999999999999999987  


Q ss_pred             CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490          528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  607 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  607 (1068)
                        |.+|++||+..-+....-.+         ++.=...+..+       ..-++--.+.-....+.+|  ..+|+-++|+
T Consensus       156 --DQTVRVWDisGLRkk~~~pg---------~~e~~~~~~~~-------~~dLfg~~DaVVK~VLEGH--DRGVNwaAfh  215 (1202)
T KOG0292|consen  156 --DQTVRVWDISGLRKKNKAPG---------SLEDQMRGQQG-------NSDLFGQTDAVVKHVLEGH--DRGVNWAAFH  215 (1202)
T ss_pred             --cceEEEEeecchhccCCCCC---------Cchhhhhcccc-------chhhcCCcCeeeeeeeccc--ccccceEEec
Confidence              66799999864332111111         00000011111       0011111112223344444  5579999999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCc--eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccc
Q 001490          608 KNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  685 (1068)
Q Consensus       608 ~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  685 (1068)
                      |.-.++++|++|..|++|.+...+  .+.+.++|-+.|.++.|+                      |....+++.+.|++
T Consensus       216 pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsEDks  273 (1202)
T KOG0292|consen  216 PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSEDKS  273 (1202)
T ss_pred             CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCCCcc
Confidence            999999999999999999998765  456789999999999997                      56788999999999


Q ss_pred             ceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCC--Ccc---ceeccCCcccC
Q 001490          686 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL--STE---ATTKVPPRLYQ  760 (1068)
Q Consensus       686 i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~---~~~~~~~~~~~  760 (1068)
                      ||+||+......+++..      ...+...++..|..+.++ ++-|+.+.+|.+..+....  .+.   ......++.+|
T Consensus       274 irVwDm~kRt~v~tfrr------endRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d  346 (1202)
T KOG0292|consen  274 IRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYD  346 (1202)
T ss_pred             EEEEecccccceeeeec------cCCeEEEEEecCCcceee-eecCCceEEEEEcccCceEEEcCCEEEEEccceEEeee
Confidence            99999987666555432      456788999999999555 4555566778877544310  110   11223455566


Q ss_pred             CCCCCceeeecCCCCC-CCCCeeEEEEecCCCEEEEEe---CCeEEEEEccCceeEEE---ecCCCCCeEEEEEeCCCCC
Q 001490          761 PRHGPQFMVNDTTDSN-SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNN  833 (1068)
Q Consensus       761 ~~~~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~  833 (1068)
                      ..+.+-.....+...+ ...++.++.++|....+..++   .+...++.+........   -........++-...  ++
T Consensus       347 ~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nr  424 (1202)
T KOG0292|consen  347 LRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NR  424 (1202)
T ss_pred             ccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cc
Confidence            6554433333333211 246788999999877776664   35555665543211100   000111222332222  22


Q ss_pred             EEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490          834 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  913 (1068)
Q Consensus       834 ~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  913 (1068)
                      +.+---.+..+.+=++.+ +..+.+..- ..+..+-+.-+|.+|+. + ...|.++|++..+...  .++.        .
T Consensus       425 favl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag~g~lll~-~-~~~v~lfdvQq~~~~~--si~~--------s  490 (1202)
T KOG0292|consen  425 FAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAGTGNLLLR-S-PDSVTLFDVQQKKKVG--SIKV--------S  490 (1202)
T ss_pred             eEEEEecCcceEEecccc-hhhhcccCc-ccccceeeccCccEEEE-c-CCeEEEEEeecceEEE--EEec--------C
Confidence            333223344555555543 222333211 23445666667766664 3 4459999999754322  1222        2


Q ss_pred             CceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc--EEEE
Q 001490          914 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCR  991 (1068)
Q Consensus       914 ~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~--~~~~  991 (1068)
                      .+..+.||+|+.++|.-+..+|.|.+.+ .+.+..+.  ..-+|.+-+|..||-+|.+....  |+ |-+.+|.  .++.
T Consensus       491 ~vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sih--Etiriksgawde~gVfiYtT~nH--ik-Yal~~GD~GIikT  564 (1202)
T KOG0292|consen  491 KVKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIH--ETIRIKSGAWDEDGVFIYTTLNH--IK-YALENGDSGIIKT  564 (1202)
T ss_pred             ceeEEEEcCccchhhhcccceEEEEecc-hhheecch--heeEeeeceeccCceEEEEehhh--hh-hhhccCCcceEEe
Confidence            5889999999999999888999999864 33333211  14578888999999888876532  32 3333331  2222


Q ss_pred             eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001490          992 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1041 (1068)
Q Consensus       992 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~ 1041 (1068)
                      +           ..+++++.+.     |+.+.+-..|+.+...+|...+.
T Consensus       565 L-----------d~~iyitkv~-----gn~V~cl~rd~~~~~~~IDptEy  598 (1202)
T KOG0292|consen  565 L-----------DKPIYITKVK-----GNKVFCLNRDGEIECLTIDPTEY  598 (1202)
T ss_pred             c-----------ccceEEEEee-----CCEEEEEecCCCeEEEeechHHH
Confidence            2           2346666663     78999999999999999876653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=273.06  Aligned_cols=523  Identities=13%  Similarity=0.187  Sum_probs=376.1

Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--------cEEEEEC
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA  448 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--------~i~iwd~  448 (1068)
                      .+-+-|.|..+....  +.+.+++++...+    +.+.+|...|.|++.+||.-  .+++|-.-|        .+++||.
T Consensus        70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Q----r~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds  141 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVA--AVGVLYNWEERSQ----RHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS  141 (626)
T ss_pred             eeEEccCccEEEEec--cEEEEEeehhhhc----ccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence            466778887765542  3456677755221    14669999999999999876  666653333        5999998


Q ss_pred             CCCceeeEeccCCCcEEEEeeeecCCccEEEEEE--cCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC-EEEEEee
Q 001490          449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGT  525 (1068)
Q Consensus       449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~  525 (1068)
                      .+-..++.+......|.+++|++.+.|.+|....  .+..+.+||+..+.........+..+....|.|.+. .+++++ 
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-  220 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-  220 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence            8888888888788899999999988887777764  456789999998888777777777889999999655 455554 


Q ss_pred             CCCCceeEEEEeCCCCeeeeE---EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCc
Q 001490          526 SKEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  602 (1068)
Q Consensus       526 ~~~~~~~i~~wd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  602 (1068)
                          .+.++.|+.+.+...++   |..+.  ...|.+++|.++|. +++|..+|.|.||+..+.+..+....|  ...|.
T Consensus       221 ----k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~  291 (626)
T KOG2106|consen  221 ----KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVF  291 (626)
T ss_pred             ----CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceE
Confidence                67899999998876655   34443  36799999999885 789999999999999887777666644  45699


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecc
Q 001490          603 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  682 (1068)
Q Consensus       603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  682 (1068)
                      +++.-.+|.+|- |+.|..|..|| ..-+.++..+-                                            
T Consensus       292 ~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~el--------------------------------------------  325 (626)
T KOG2106|consen  292 SLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETEL--------------------------------------------  325 (626)
T ss_pred             EEEEecCccEee-cCccceEEecc-ccccccccccC--------------------------------------------
Confidence            999999997666 99999999999 32222221110                                            


Q ss_pred             cccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCC
Q 001490          683 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  762 (1068)
Q Consensus       683 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  762 (1068)
                                            |+  ..+.|+.++-.  +..|+.|...+.|.-=.+                      .
T Consensus       326 ----------------------Pe--~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~----------------------~  357 (626)
T KOG2106|consen  326 ----------------------PE--QFGPIRTVAEG--KGDILVGTTRNFILQGTL----------------------E  357 (626)
T ss_pred             ----------------------ch--hcCCeeEEecC--CCcEEEeeccceEEEeee----------------------c
Confidence                                  11  12223322221  111444444433322111                      1


Q ss_pred             CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECC
Q 001490          763 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  841 (1068)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  841 (1068)
                      ++..+..     .+|......++.+|+...+++++ |+.+++|+  ..++..+.. ...+..|+.|.| .| .+|.|+..
T Consensus       358 ~~f~~~v-----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~  427 (626)
T KOG2106|consen  358 NGFTLTV-----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTAT  427 (626)
T ss_pred             CCceEEE-----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeecc
Confidence            1111111     14778889999999999898888 89999999  445554443 456889999999 77 99999999


Q ss_pred             CeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEe
Q 001490          842 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  921 (1068)
Q Consensus       842 g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  921 (1068)
                      |...+.|.++...+..-.. ..++++++|+|||.+||.|+.|+.|+||.++.+...-. .+....+     .+|+.+.||
T Consensus       428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS  500 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWS  500 (626)
T ss_pred             ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeec
Confidence            9999999999665554444 88999999999999999999999999999987553322 2222333     379999999


Q ss_pred             eCCCEEEE-EeCCeEEEEECCCceeeee-----------------eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001490          922 KDQTRFLL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA  983 (1068)
Q Consensus       922 pdg~~la~-~~d~~i~vwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~  983 (1068)
                      +|+++|.+ +.|-.|..|....-..+..                 ....|...|..++-+.+.+++++|...|.|++|..
T Consensus       501 ~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  501 SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            99999999 7888899995432221111                 11235677788888889999999999999999998


Q ss_pred             CCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490          984 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus       984 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
                      .--+..+.+.  .+..+   +.  ...+++|.-.| ..|++.++|..|..|++
T Consensus       581 Pc~s~rA~~h--e~~gh---s~--~vt~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  581 PCSSPRAPSH--EYGGH---SS--HVTNVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccCCCcccce--eeccc---cc--eeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence            8665553332  22222   23  33467787644 66666669999999987

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.4e-33  Score=284.97  Aligned_cols=279  Identities=19%  Similarity=0.302  Sum_probs=252.3

Q ss_pred             CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE
Q 001490          311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  390 (1068)
Q Consensus       311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~  390 (1068)
                      ..|++++|+.+|. +||+|+.||.++||+...+ ++.+                   +..|+++|.++.|+.+|.||+++
T Consensus       236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~  294 (524)
T KOG0273|consen  236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG  294 (524)
T ss_pred             CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence            4799999999997 8899999999999997644 4433                   66799999999999999999999


Q ss_pred             eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeee
Q 001490          391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  470 (1068)
Q Consensus       391 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~  470 (1068)
                      +.|+++.+||..+|+...   .+.-|..+-.++.|-.+..   +++++.|+.|+|+.+....++.++.+|.++|.++.|.
T Consensus       295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence            999999999999987544   4567887778899987775   9999999999999999999999999999999999996


Q ss_pred             ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC---------EEEEEeeCCCCceeEEEEeCCCC
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESEG  541 (1068)
Q Consensus       471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~---------~l~~~~~~~~~~~~i~~wd~~~~  541 (1068)
                      |  .|.+|+++|.|+++++|..........+..|...|..+.|+|+|.         .+++++.    +++|++||+..+
T Consensus       369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g  442 (524)
T KOG0273|consen  369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG  442 (524)
T ss_pred             C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence            6  668999999999999999999999999999999999999999653         5677765    778999999999


Q ss_pred             eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490          542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  621 (1068)
Q Consensus       542 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  621 (1068)
                      .++.+|..|+   .+|++++|+|+++++++|+.||.|.+|+..+++..+.....+   .|..++|+.+|..+..+..|+.
T Consensus       443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~  516 (524)
T KOG0273|consen  443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS  516 (524)
T ss_pred             ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence            9999999998   999999999999999999999999999999999999997654   3899999999999999999999


Q ss_pred             EEEEECC
Q 001490          622 IKILETP  628 (1068)
Q Consensus       622 i~iwd~~  628 (1068)
                      +.+.|+.
T Consensus       517 vcvldlr  523 (524)
T KOG0273|consen  517 VCVLDLR  523 (524)
T ss_pred             ceEEEec
Confidence            9998864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-34  Score=260.81  Aligned_cols=292  Identities=15%  Similarity=0.222  Sum_probs=253.2

Q ss_pred             CCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      .+|....++|..|+++|.++.|.-||+ +..+++.|.+|++|+...|.++++                   +.+|...|.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl   63 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL   63 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence            457778889999999999999999999 567777889999999999999987                   889999999


Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC--cee
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRT  454 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~  454 (1068)
                      .++.+.|...+++|+.|+.+.+||+++|+..+   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||-++.  +++
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence            99999999999999999999999999998777   7889999999999999998  9999999999999998754  677


Q ss_pred             eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                      +.+......|.++.+    .+..+++|+.||++|.||++.+.....+  .+.+|++++|++|++..++++-    ++.++
T Consensus       139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr  208 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR  208 (307)
T ss_pred             chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence            888888899999987    4468999999999999999887665444  4558999999999999998876    66899


Q ss_pred             EEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          535 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       535 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      +.|-.+|++++.+.||......+ .++++.....+++|++||.+++||+.....+..+..++. ..+..++++|....++
T Consensus       209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI  286 (307)
T ss_pred             ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence            99999999999999998444444 345677778999999999999999999999999987754 3478999999877777


Q ss_pred             EEECCCeEEEEE
Q 001490          615 VIANENRIKILE  626 (1068)
Q Consensus       615 ~~~~dg~i~iwd  626 (1068)
                      ++... .+..|.
T Consensus       287 ~A~~~-~~~~~~  297 (307)
T KOG0316|consen  287 TATGH-GDLFWY  297 (307)
T ss_pred             EecCC-ceecee
Confidence            77653 455554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.3e-34  Score=309.44  Aligned_cols=278  Identities=18%  Similarity=0.259  Sum_probs=242.5

Q ss_pred             cCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCccee--------eeeeeee----eccccccc
Q 001490          295 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVW----DIGACSML  362 (1068)
Q Consensus       295 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~--------~~~~~~~----~~~~~~~~  362 (1068)
                      ...+|.-|..++..-...++|+.||+|+. ++|.|-.|..|++|.+...+...        ..+...-    +.......
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            45677888888887667999999999998 88999999999999998533111        1100000    11111222


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490          363 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  442 (1068)
Q Consensus       363 ~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~  442 (1068)
                      .....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++-   .+.||..+|+++.|+|-|-  ++||++.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            3344588999999999999999999999999999999999976554   6789999999999999998  8999999999


Q ss_pred             EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490          443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  522 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~  522 (1068)
                      .++|......+++.+.+|-+.|.|+.|+|  |..++++||.|.+||+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            99999999999999999999999999998  5569999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCe
Q 001490          523 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  587 (1068)
Q Consensus       523 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~  587 (1068)
                      |+.    ++.|.+||+.+++.+..+.+|.   +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus       595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            976    7789999999999999999998   999999999999999999999999999987543

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.6e-33  Score=267.33  Aligned_cols=290  Identities=18%  Similarity=0.219  Sum_probs=251.5

Q ss_pred             eecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC
Q 001490          304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  383 (1068)
Q Consensus       304 ~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd  383 (1068)
                      ..|.+|+++|..+.|+|+|. ++|+|+.|..|.+|++.....-                  ...+++|++.|..+.|.+|
T Consensus        41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN------------------~~~lkgHsgAVM~l~~~~d  101 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCEN------------------FWVLKGHSGAVMELHGMRD  101 (338)
T ss_pred             hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccc------------------eeeeccccceeEeeeeccC
Confidence            34679999999999999997 7899999999999997643221                  1127799999999999999


Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  463 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  463 (1068)
                      +..|++++.|++|+.||+++|+.++   .+++|..-|+.+.-+.-|.. ++.+++.|+++++||+++...++++. ..-.
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq  176 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ  176 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence            9999999999999999999998777   67799999999996666665 78899999999999999998888775 4567


Q ss_pred             EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---
Q 001490          464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---  540 (1068)
Q Consensus       464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~---  540 (1068)
                      +++++|..  .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+.+.    +.++++||++-   
T Consensus       177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP  250 (338)
T ss_pred             EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence            88888854  5668999999999999999999999999999999999999999999999875    77899999874   


Q ss_pred             -CeeeeEEecccc-ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490          541 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       541 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                       .+++..+.++.. .......++|+|++..+-+|+.|..+++||......+..+++|.  ..|+++.|+|....|.+++.
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence             455778887651 12346678999999999999999999999999989999988774  46999999999999999999


Q ss_pred             CCeEEEE
Q 001490          619 ENRIKIL  625 (1068)
Q Consensus       619 dg~i~iw  625 (1068)
                      |.+|++=
T Consensus       329 dk~i~lg  335 (338)
T KOG0265|consen  329 DKTIYLG  335 (338)
T ss_pred             CceeEee
Confidence            9999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-34  Score=281.56  Aligned_cols=292  Identities=16%  Similarity=0.177  Sum_probs=252.0

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +..|.+.|+.+.||++|+|||+++.|.+..+|++.....++...++.+|..+|..+.||||.+  +|++|+.|..+.+||
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLWD  297 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeecc
Confidence            778999999999999999999999999999999987776777778999999999999999999  899999999999999


Q ss_pred             CCCCceeeEec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490          448 AVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       448 ~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      +.+|...+.+. +|...+.+++|.|  ||..+++|+.|+.+..||++......--......|.+++.++||+++++... 
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-  374 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-  374 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-
Confidence            99999887763 3568899999976  7889999999999999998765432222223357899999999999998876 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  606 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  606 (1068)
                         +..|++++..+.........+    .+|++.+.+.+++++++--.+..+.+||++....+..+.++.....+..-+|
T Consensus       375 ---d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  375 ---DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             ---ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence               556999998877665444443    5899999999999999999999999999998888888887765555556666


Q ss_pred             ec-CCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccc
Q 001490          607 NK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  685 (1068)
Q Consensus       607 s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  685 (1068)
                      .- +..++++|++|+.|+||+..+++++..+.||...+++++++|                     .+..++|+++.||+
T Consensus       448 gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDgt  506 (519)
T KOG0293|consen  448 GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDGT  506 (519)
T ss_pred             CCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCCe
Confidence            65 558999999999999999999999999999999999999996                     46678999999999


Q ss_pred             ceeeccc
Q 001490          686 SEVEKPL  692 (1068)
Q Consensus       686 i~~wd~~  692 (1068)
                      ||+|-..
T Consensus       507 IRIWg~~  513 (519)
T KOG0293|consen  507 IRIWGPS  513 (519)
T ss_pred             EEEecCC
Confidence            9999865

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=274.81  Aligned_cols=285  Identities=20%  Similarity=0.282  Sum_probs=263.7

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +.+|..+|+.+-|+|+--..++++.|++|++||..+|+..+   .++||...|.+++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            67899999999999999999999999999999999998755   7889999999999999999  899999999999999


Q ss_pred             CCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490          448 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       448 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      .++ -++++.+.+|...|.+++|.|.  |.++++++.|.+|+.|+++++-++.++.+|...+..+..+.||..+++++. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence            887 6778888999999999999885  469999999999999999999999999999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC---------------CCEEEEEECCCeEEEEEcCCCeEEEE
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT  591 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~  591 (1068)
                         +.++++|-+.++++...++.|+   .+|.+++|.|.               ++++.+++.|++|++||+.++.++.+
T Consensus       256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence               6689999999999999999998   89999999773               25888999999999999999999999


Q ss_pred             EeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCC
Q 001490          592 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  671 (1068)
Q Consensus       592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1068)
                      +.+|.  ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.                      
T Consensus       330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh----------------------  385 (406)
T KOG0295|consen  330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH----------------------  385 (406)
T ss_pred             Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence            99775  469999999999999999999999999999999999999999999999886                      


Q ss_pred             CCcccceeecccccceeec
Q 001490          672 EDVKPEISVEAENKSEVEK  690 (1068)
Q Consensus       672 ~~~~~l~s~~~d~~i~~wd  690 (1068)
                      .+..++++|+-|.++++|.
T Consensus       386 ~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCCceEEeccccceeeeee
Confidence            3445899999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.3e-33  Score=263.91  Aligned_cols=288  Identities=18%  Similarity=0.298  Sum_probs=250.1

Q ss_pred             eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      .+.+|++.|..+.|+|+|.+||+|+.|..|.+|++....  .....+++|.+.|..+.|.+|+.  .+++++.|++|+.|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence            488999999999999999999999999999999986543  33346789999999999999999  89999999999999


Q ss_pred             ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490          447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      |+++|++++.+++|...|+++... ..+-.++.+++.||++++||++.......+.. ..+++++.|..++..+++++- 
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI-  194 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI-  194 (338)
T ss_pred             ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence            999999999999999999999843 23446788999999999999998776665532 347899999999999999987 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCCCCC--
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE--  600 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~--  600 (1068)
                         ++.|++||++.+....++.||.   +.|+.+..+++|.++++-+.|.++++||++..    +++..+.++.+.-.  
T Consensus       195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn  268 (338)
T KOG0265|consen  195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN  268 (338)
T ss_pred             ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence               4559999999999999999999   99999999999999999999999999999753    44666665544322  


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490          601 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  680 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  680 (1068)
                      ...++|+|++..+..|+.|..+++||......+..+.+|.+.|.++.|.|                      ....+.++
T Consensus       269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~  326 (338)
T KOG0265|consen  269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC  326 (338)
T ss_pred             cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence            35689999999999999999999999999999999999999999999975                      45567778


Q ss_pred             cccccceee
Q 001490          681 EAENKSEVE  689 (1068)
Q Consensus       681 ~~d~~i~~w  689 (1068)
                      +.|++|.+=
T Consensus       327 ~sdk~i~lg  335 (338)
T KOG0265|consen  327 SSDKTIYLG  335 (338)
T ss_pred             ccCceeEee
Confidence            888777653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=310.42  Aligned_cols=294  Identities=21%  Similarity=0.350  Sum_probs=256.3

Q ss_pred             eeecccC-CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCc--ceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          303 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       303 ~~~l~~h-~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      .+++.+| ...|.++.|||||+ .+++++.|+.+++|+..+++  .++.                   +.+|...|..++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~  210 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA  210 (456)
T ss_pred             eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence            6666665 77999999999998 57999999999999997776  4332                   578999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEc-cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      |+|||+++++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+.+++++..+.
T Consensus       211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence            9999999999999999999999 4434444   7889999999999999997  89999999999999999999999999


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--ceEEecCCCC--cEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                      +|.+.|++++|.+  ++.+|++++.|+.|++||+.++.  ....+..+..  .++++.|+|+++++++++.    ++.+.
T Consensus       286 ~hs~~is~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~  359 (456)
T KOG0266|consen  286 GHSDGISGLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK  359 (456)
T ss_pred             ccCCceEEEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence            9999999999965  77899999999999999999988  3445544444  5999999999999999986    66799


Q ss_pred             EEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          535 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       535 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      +||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|...+++
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA  438 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence            99999999999999998322245556667889999999999999999999999999998875 45688999999999999


Q ss_pred             EEE--CCCeEEEEECC
Q 001490          615 VIA--NENRIKILETP  628 (1068)
Q Consensus       615 ~~~--~dg~i~iwd~~  628 (1068)
                      +++  .|+.+++|...
T Consensus       439 s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  439 SSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecCcCCCceEEEecCC
Confidence            998  68999999754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.1e-34  Score=291.22  Aligned_cols=296  Identities=16%  Similarity=0.251  Sum_probs=253.8

Q ss_pred             CccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       298 ~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      +|...++++.||+..|+++.|.|-.-+||++|+.|+.|+||++.. ++++++                   +.+|..+|.
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vr  262 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVR  262 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhh
Confidence            588999999999999999999993335999999999999999976 777776                   779999999


Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      .++|+++|..+.+++.|+.|++||+++|+++..   + .....+.|+.|.||+.. .+++|+.|+.|+.||+++++.++.
T Consensus       263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f-~~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe  337 (503)
T KOG0282|consen  263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---F-HLDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE  337 (503)
T ss_pred             hhhccccCCeeeeeecceeeeeeccccceEEEE---E-ecCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence            999999999999999999999999999987652   2 12346899999999955 788899999999999999999999


Q ss_pred             eccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-ecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          457 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       457 ~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      +..|-+.|..+.|.+  +|..+++.++|+.+++|+.+....... .........++..+|+++++++-+.    ++.|.+
T Consensus       338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i  411 (503)
T KOG0282|consen  338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI  411 (503)
T ss_pred             HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence            999999999999966  778999999999999999987665543 3334457788999999999998765    667888


Q ss_pred             EeCCCC---eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-CCC
Q 001490          536 WNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGT  611 (1068)
Q Consensus       536 wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~  611 (1068)
                      +.+...   ...+.|.||.. .+.-..+.|+|||.+|++|+.||.+.+||.++-+++..+..+.  ..+..+.|+| ...
T Consensus       412 fs~~~~~r~nkkK~feGh~v-aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~S  488 (503)
T KOG0282|consen  412 FSTVPPFRLNKKKRFEGHSV-AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEPS  488 (503)
T ss_pred             EecccccccCHhhhhcceec-cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCcc
Confidence            876532   33456777762 2445678999999999999999999999999999999999874  4588999999 466


Q ss_pred             EEEEEECCCeEEEEE
Q 001490          612 LLAVIANENRIKILE  626 (1068)
Q Consensus       612 ~l~~~~~dg~i~iwd  626 (1068)
                      .+|+++.||.|++|+
T Consensus       489 kvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  489 KVATCGWDGLIKIWD  503 (503)
T ss_pred             eeEecccCceeEecC
Confidence            899999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.4e-34  Score=283.37  Aligned_cols=283  Identities=22%  Similarity=0.323  Sum_probs=247.4

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      +-.|..|.|.|+|++| ++|+..|.+.+|+..+-      +|+             .++..|...|+++.||++|.++++
T Consensus        96 kc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~wmiS  155 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTWMIS  155 (464)
T ss_pred             ccceeeEEEcCCCcee-EeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCEEEE
Confidence            3489999999999965 88999999999997432      111             126689999999999999999999


Q ss_pred             EeCCcEEEEEEccCCCcccceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  468 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~  468 (1068)
                      |+.+|.|++|+..-... +   .+.. |...|.+++|||+..  .++++++|++|+|||....+....+.||.-.|.++.
T Consensus       156 gD~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  156 GDKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD  229 (464)
T ss_pred             cCCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence            99999999999876542 2   2334 458999999999888  799999999999999999988889999999999999


Q ss_pred             eeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEe
Q 001490          469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  548 (1068)
Q Consensus       469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~  548 (1068)
                      |+|..  .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++.    |..++++|+++.+.+.+++
T Consensus       230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r  303 (464)
T KOG0284|consen  230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYR  303 (464)
T ss_pred             cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhh
Confidence            99965  49999999999999999999999999999999999999999999999986    6679999999999999999


Q ss_pred             ccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          549 GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       549 ~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      +|.   ..+.++.|+|-.. .+.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-
T Consensus       304 ~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  304 GHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeecc
Confidence            998   9999999999755 455589999999999986666666643 33457999999999999999999999999975


Q ss_pred             C
Q 001490          628 P  628 (1068)
Q Consensus       628 ~  628 (1068)
                      .
T Consensus       380 ~  380 (464)
T KOG0284|consen  380 N  380 (464)
T ss_pred             C
Confidence            4

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=267.98  Aligned_cols=294  Identities=14%  Similarity=0.233  Sum_probs=258.4

Q ss_pred             eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      ++.+|.+.|.|+++.|...++++|+.|++|+|||+.+|+...   ++.||...|..+++|+-..  ++++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            377999999999999999999999999999999999997544   7889999999999999888  89999999999999


Q ss_pred             ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490          447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      |++..+.++.+.||-..|.+++.+|.-  ..|++++.|.++++||+++...+..+.+|..+|.++.+.|-...+++|+. 
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence            999999999999999999999999865  49999999999999999999999999999999999999998888999986 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  606 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  606 (1068)
                         |.+|++||+..|+...++..|.   ..+.+++.+|....+++++.|. |+-|++..|..++.+.++.  ..+++++.
T Consensus       298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~  368 (460)
T KOG0285|consen  298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV  368 (460)
T ss_pred             ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence               7789999999999999998887   8999999999998888888765 8999999999999987664  45888998


Q ss_pred             ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccc
Q 001490          607 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  686 (1068)
Q Consensus       607 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  686 (1068)
                      +.|+ ++++|+++|.+.+||.+++..++.......+                               |      +     
T Consensus       369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------G------S-----  405 (460)
T KOG0285|consen  369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------G------S-----  405 (460)
T ss_pred             ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------C------c-----
Confidence            8877 7889999999999999988655544211000                               0      0     


Q ss_pred             eeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEecc
Q 001490          687 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  740 (1068)
Q Consensus       687 ~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~  740 (1068)
                                          ......|.+.+|...|.+|+++..|.+|++|.-+
T Consensus       406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence                                0134568889999999999999999999999744

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.1e-29  Score=263.09  Aligned_cols=552  Identities=16%  Similarity=0.158  Sum_probs=378.2

Q ss_pred             ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCC-CcceEEEEECCC
Q 001490          305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPD  383 (1068)
Q Consensus       305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~spd  383 (1068)
                      ...-...+|.++|||.+.+ .||.+-.||.|.||++..+-...                  ..+.++ ...|.+++|++ 
T Consensus        20 f~d~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~e-   79 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWAE-   79 (691)
T ss_pred             EEeeeccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEcc-
Confidence            3344456999999999998 57999999999999998754332                  224444 46899999995 


Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee--EeccCC
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHG  461 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~  461 (1068)
                      |..|.+.+.+|.|.-||+.+++...   .+....+.|++++.+|.+.  .++.|++||.+...+...+...+  .|....
T Consensus        80 ~~RLFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~  154 (691)
T KOG2048|consen   80 GGRLFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQK  154 (691)
T ss_pred             CCeEEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeeccccc
Confidence            5566777899999999999987555   6667788999999999998  78899999988888877776653  445567


Q ss_pred             CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec-----C---CCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490          462 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       462 ~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-----~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i  533 (1068)
                      +.|.++.|++  ++..+++|+.||.|++||...+.......     .   ...-|.++.|-.++ .|++|-    ..|+|
T Consensus       155 sRvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD----S~G~V  227 (691)
T KOG2048|consen  155 SRVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD----SAGTV  227 (691)
T ss_pred             ceEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec----CCceE
Confidence            8899998865  77789999999999999999888766221     1   12246777777555 455553    36789


Q ss_pred             EEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeE--EEEEeCCCCCCCCceEEEecCCC
Q 001490          534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGT  611 (1068)
Q Consensus       534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~  611 (1068)
                      .+||...+.+++.+..|.   ..|.+++..++++++++++.|+.|.-+...++..  +.......+...+.+++..++  
T Consensus       228 ~FWd~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--  302 (691)
T KOG2048|consen  228 TFWDSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--  302 (691)
T ss_pred             EEEcccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence            999999999999998888   9999999999999999999999999998876643  222222233456899999877  


Q ss_pred             EEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecc
Q 001490          612 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  691 (1068)
Q Consensus       612 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~  691 (1068)
                      .+++|+.|.++.+-....-+..    .|...    ...|.....         .     ....+++..--....+.+|.+
T Consensus       303 ~l~sgG~d~~l~i~~s~~~~~~----~h~~~----~~~p~~~~v---------~-----~a~~~~L~~~w~~h~v~lwrl  360 (691)
T KOG2048|consen  303 ALISGGRDFTLAICSSREFKNM----DHRQK----NLFPASDRV---------S-----VAPENRLLVLWKAHGVDLWRL  360 (691)
T ss_pred             eEEecceeeEEEEccccccCch----hhhcc----cccccccee---------e-----cCccceEEEEeccccccceec
Confidence            8999999999888665542111    11100    000100000         0     011223333334455666665


Q ss_pred             cccCC------cccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCC
Q 001490          692 LFARP------SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP  765 (1068)
Q Consensus       692 ~~~~~------~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  765 (1068)
                      .....      .....+..+   ....|.+.+.||+|++++.+.-. .++||.++....           +++-....  
T Consensus       361 GS~~~~g~~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~-----------vk~~~v~~--  423 (691)
T KOG2048|consen  361 GSVILQGEYNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN-----------VKVINVDD--  423 (691)
T ss_pred             cCcccccccChhhheeeecC---CccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc-----------eeEEEecc--
Confidence            54311      112222222   35578999999999977666544 677887754321           00000000  


Q ss_pred             ceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEccCcee--EEEec--CCCCCeEEEEEeCCCCCEEEEEE
Q 001490          766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT--ILTIM--PPSPTATSLAFNPHDNNVIAIGM  839 (1068)
Q Consensus       766 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~--~~~~~--~~~~~i~~l~~s~~d~~~lasg~  839 (1068)
                            .+  ...-....+.|+-|+..++..+  ...+.+++.++...  +..+.  .....|+.++.|| +|++||+.+
T Consensus       424 ------~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~  494 (691)
T KOG2048|consen  424 ------VP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIS  494 (691)
T ss_pred             ------ch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEe
Confidence                  00  1234567888999988887777  47788888875433  22222  2456899999999 999999999


Q ss_pred             CCCeEEEEEcCCceeeeeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeec---CCCcccCCCCc
Q 001490          840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT---PDGVMTLAPSE  915 (1068)
Q Consensus       840 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~v  915 (1068)
                      .+|.|.+|++++++.......-...|++++|+| +.+.|+.+..|+.+.-+|++............   +.........+
T Consensus       495 t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~  574 (691)
T KOG2048|consen  495 TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGI  574 (691)
T ss_pred             ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCC
Confidence            999999999998875444434457899999995 66889999999999999995433222211111   11111122467


Q ss_pred             eEEEEeeCCCEEEEE-eCCeEEEEECC
Q 001490          916 THIQFHKDQTRFLLV-HETHLAIYEAE  941 (1068)
Q Consensus       916 ~~~~~spdg~~la~~-~d~~i~vwd~~  941 (1068)
                      ..+.|+|........ ..+-+.+.|..
T Consensus       575 ~gisfd~~n~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  575 PGISFDPKNSSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             ceEEeCCCCccEEEEEcCcEEEEEecC
Confidence            888888777655553 33445555543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.9e-31  Score=246.74  Aligned_cols=293  Identities=16%  Similarity=0.240  Sum_probs=236.4

Q ss_pred             ccccccEEEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490          707 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  785 (1068)
Q Consensus       707 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  785 (1068)
                      .+|.+++..++|+|. |..|++++.|..|++|+.....              -|        ........+|...|+.+|
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~--------~ck~vld~~hkrsVRsvA   68 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SW--------TCKTVLDDGHKRSVRSVA   68 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cE--------EEEEeccccchheeeeee
Confidence            458889999999999 8899999999999999865310              01        111111125999999999


Q ss_pred             EecCCCEEEEEe-CCeEEEEEcc--CceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc---eeeeeec
Q 001490          786 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE  859 (1068)
Q Consensus       786 ~s~dg~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~~~  859 (1068)
                      ++|.|++||+++ |.++.||.-.  +.+++.++.+|..+|.|++||+ +|++||+++.|+.|-||.+..+   ++...++
T Consensus        69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence            999999999999 9999999876  4578899999999999999999 9999999999999999999854   5788999


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEE
Q 001490          860 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY  938 (1068)
Q Consensus       860 ~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vw  938 (1068)
                      +|...|..+.|+|...+|+++|.|.+|++|+-..+  ....+.+.+.+|..   .|.+++|.+.|..|++ +.|++++||
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence            99999999999999999999999999999988732  13567888888876   7999999999999988 678999999


Q ss_pred             ECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCC
Q 001490          939 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1018 (1068)
Q Consensus       939 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1018 (1068)
                      ..-+     .+..-|.+.+..+.|.  ...|++++.|+.|+++.-...-.-..+. ......+.|+..+  -++.|.|..
T Consensus       223 ~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-l~~~~~~aHe~dV--NsV~w~p~~  292 (312)
T KOG0645|consen  223 RLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-LLAKKEGAHEVDV--NSVQWNPKV  292 (312)
T ss_pred             eecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-HHHhhhccccccc--ceEEEcCCC
Confidence            9652     2344578899999998  4479999999999999877531111111 1111222344444  478999955


Q ss_pred             CCEEEEEeCCCcEEEEeCC
Q 001490         1019 PTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1019 ~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                      .+.|++|++||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            7899999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.2e-32  Score=295.40  Aligned_cols=266  Identities=14%  Similarity=0.190  Sum_probs=232.0

Q ss_pred             ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCC---------ccceeccCCcccCCCCCCceeeecCCCCCCCC
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS---------TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  779 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  779 (1068)
                      ....+.+..|++|+..++.|-.|..|++|.+...++...         ....+.....+.|...+.....  +  .+|.+
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~G  452 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSG  452 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCC
Confidence            445789999999999999999999999999986443211         1112222344555555543332  2  25999


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490          780 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  858 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~  858 (1068)
                      +|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|+++.|++-++|......+++.+
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence            999999999999999999 69999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEE
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI  937 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~v  937 (1068)
                      .+|-+.|.|+.|+|+..|+++||.|.+|++||+.+|.     .++.+.||..   +|.+++|||+|++||+ +.|+.|.+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence            9999999999999999999999999999999999966     5777788887   9999999999999999 68899999


Q ss_pred             EECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE
Q 001490          938 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV  988 (1068)
Q Consensus       938 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~  988 (1068)
                      ||+.+|..+.. +.+|.+.|.++.||.||..||+|+.|.+|++||+..-..
T Consensus       604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            99999999987 557899999999999999999999999999999986533

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.4e-31  Score=284.23  Aligned_cols=288  Identities=25%  Similarity=0.410  Sum_probs=254.7

Q ss_pred             eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp  382 (1068)
                      .+++++|.+.|.+++|+|+++ ++++++.||.|++|++.+++....                   +..|...+..+.|+|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~   61 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASA   61 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECC
Confidence            356789999999999999997 678888899999999998875543                   557888999999999


Q ss_pred             CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  462 (1068)
Q Consensus       383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  462 (1068)
                      ++++|++++.++.|++||+.+++...   .+..|...|.++.|+++++  ++++++.|+.|.+||+.+++....+..|..
T Consensus        62 ~~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  136 (289)
T cd00200          62 DGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTD  136 (289)
T ss_pred             CCCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCC
Confidence            99999999999999999999875444   5668888999999999987  788888899999999999999999999999


Q ss_pred             cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                      .+.++++++.  +.++++++.++.|++||+...+....+..+...+.+++|+|+++.+++++.    ++.+.+||+.+++
T Consensus       137 ~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~  210 (289)
T cd00200         137 WVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGK  210 (289)
T ss_pred             cEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCc
Confidence            9999999774  568888888999999999988888888888889999999999999998875    5679999999998


Q ss_pred             eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001490          543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  622 (1068)
Q Consensus       543 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  622 (1068)
                      .+..+..+.   ..+.++.|+|++.++++++.+|.|++||+.+++....+..+  ...+.+++|+|+++++++++.|+.+
T Consensus       211 ~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         211 CLGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             eecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeE
Confidence            888887776   78999999999888888888999999999999888888754  3468999999999999999999999


Q ss_pred             EEEE
Q 001490          623 KILE  626 (1068)
Q Consensus       623 ~iwd  626 (1068)
                      ++|+
T Consensus       286 ~iw~  289 (289)
T cd00200         286 RIWD  289 (289)
T ss_pred             EecC
Confidence            9996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.4e-32  Score=271.12  Aligned_cols=285  Identities=18%  Similarity=0.265  Sum_probs=242.9

Q ss_pred             ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  788 (1068)
                      ....|..+.|.|+|++|++++..|.+.+|+...-                          .++.-..+|...|+++.+|+
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--------------------------nFEtilQaHDs~Vr~m~ws~  148 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--------------------------NFETILQAHDSPVRTMKWSH  148 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCcee--------------------------eHHHHhhhhcccceeEEEcc
Confidence            3457899999999999999999999999985321                          11111225999999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEEecCCC-CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeE
Q 001490          789 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT  866 (1068)
Q Consensus       789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~  866 (1068)
                      +|.++++|+ +|.|++|+..- ..+..+..|. ..|++++||| +...++++++||+|+|||....+....+.||.-.|.
T Consensus       149 ~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  149 NGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             CCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence            999999999 68999999874 3444555554 8999999999 777889999999999999999998899999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCcee
Q 001490          867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC  945 (1068)
Q Consensus       867 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~  945 (1068)
                      +++|+|...++|++|.|..|++||.+++.     ++..+.+|..   .|..+.|+|++.+|++ +.|..++++|+++.+.
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence            99999999999999999999999999965     7777777776   8999999999999999 7899999999998877


Q ss_pred             eeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001490          946 LKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1024 (1068)
Q Consensus       946 ~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1024 (1068)
                      +.. +.+|...|++++|+| ...++.+|+.||.|..|.+...+.+..+.       ..|...|+  +++|+| =|.+|++
T Consensus       299 l~~-~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------~AHd~~iw--sl~~hP-lGhil~t  367 (464)
T KOG0284|consen  299 LFT-YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------PAHDGEIW--SLAYHP-LGHILAT  367 (464)
T ss_pred             HHH-hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-------ccccccee--eeeccc-cceeEee
Confidence            776 678999999999999 55789999999999999999666663333       23566666  679999 5899999


Q ss_pred             EeCCCcEEEEeCCCCC
Q 001490         1025 GLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus      1025 ~~~dg~i~~w~~~~~~ 1040 (1068)
                      |+.|.++++|.-+..+
T Consensus       368 gsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  368 GSNDRTVRFWTRNRPG  383 (464)
T ss_pred             cCCCcceeeeccCCCC
Confidence            9999999999876655

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=266.55  Aligned_cols=276  Identities=21%  Similarity=0.305  Sum_probs=234.1

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEE
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  388 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~la  388 (1068)
                      ..+.|.|+.+..+   .+++|..|.+|+|||.++-++++.                   +.||++.|.|+.|.  .+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence            4568999999643   359999999999999999888865                   88999999999985  56999


Q ss_pred             EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee---eEeccCCCcEE
Q 001490          389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVY  465 (1068)
Q Consensus       389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~  465 (1068)
                      +|+.|.+|+|||+++|++++   ++-+|...|..+.|+..    ++++++.|.+|.+||+.....+   +.+.||.+.|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   66789999999999853    7999999999999999876543   56789999999


Q ss_pred             EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001490          466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  545 (1068)
Q Consensus       466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  545 (1068)
                      .+.|    +.+++++++.|.+|++|+..+...+..+.+|...|.|+.+  .|+++++|+.    |.+|++||+..|.+++
T Consensus       325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR  394 (499)
T ss_pred             eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence            9988    5569999999999999999999999999999999988775  5788888876    7789999999999999


Q ss_pred             EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE-------eCCCCCCCCceEEEecCCCEEEEEEC
Q 001490          546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       546 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      .++||+   .-|.++.|.  .+.+++|+.||+|++||+.++..-...       ..-.+...|..+.|  |...+++++.
T Consensus       395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH  467 (499)
T KOG0281|consen  395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH  467 (499)
T ss_pred             HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence            999999   899999995  578999999999999999876432111       11122334566666  4668899999


Q ss_pred             CCeEEEEECCCCce
Q 001490          619 ENRIKILETPESNS  632 (1068)
Q Consensus       619 dg~i~iwd~~~~~~  632 (1068)
                      |.+|.|||..++..
T Consensus       468 ddtILiWdFl~~~~  481 (499)
T KOG0281|consen  468 DDTILIWDFLNGPP  481 (499)
T ss_pred             CCeEEEEEcCCCCc
Confidence            99999999987643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-30  Score=295.07  Aligned_cols=291  Identities=21%  Similarity=0.304  Sum_probs=255.3

Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC-
Q 001490          370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-  448 (1068)
Q Consensus       370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~-  448 (1068)
                      .+...|.++.||+||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++  ++++++.|++|+|||+ 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence            3478999999999999999999999999999977662 22235679999999999999999  8999999999999999 


Q ss_pred             CCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490          449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  528 (1068)
Q Consensus       449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~  528 (1068)
                      ..+..++++++|...|++++|++  +++++++|+.|++|++||+++++....+..|...|.+++|++++++|++++.   
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---  308 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---  308 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence            56689999999999999999987  5589999999999999999999999999999999999999999999999865   


Q ss_pred             CceeEEEEeCCCCe--eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCC-CCCceEE
Q 001490          529 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC  605 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~  605 (1068)
                       ++.|++||+.++.  +...+.++.... .+.++.|+|++.++++++.|+.+++||+..+........+... ..+.+..
T Consensus       309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence             7789999999999  567888877333 6999999999999999999999999999999999988877653 1334455


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceeeecccc-ccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeec--c
Q 001490          606 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A  682 (1068)
Q Consensus       606 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~  682 (1068)
                      .++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..++++                      +...++++++  .
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG  444 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence            6789999999999999999999999999999999 7777777775                      5566777777  6


Q ss_pred             cccceeeccc
Q 001490          683 ENKSEVEKPL  692 (1068)
Q Consensus       683 d~~i~~wd~~  692 (1068)
                      |+.+++|...
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            8889999754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.97  E-value=1.3e-29  Score=263.87  Aligned_cols=698  Identities=16%  Similarity=0.141  Sum_probs=373.1

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .-+-.|.+|.+.|+.+.|||-...|||+||.|..|+||.+..|-...-             ......+.+..-.|.++.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence            345678899999999999997777999999999999999985432210             0112224445568889999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC-CceeeEecc
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG  459 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~  459 (1068)
                      +|...-|...+..|+++|||+.+++.+.   .+.+|.+.|.++.|+.||+  +|++.+.|+.|+|||.+. ++.++..++
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9987666666688999999999987554   7889999999999999999  999999999999999874 677888888


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcC----CcEEEEeCCCCCce-EEecC-CCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i  533 (1068)
                      |.+. ..-.+.+-++-..|++.+.+    ..|++||.+..... ..+.. ....|.---|.||.++|+.++   .|+..+
T Consensus       212 H~~~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l  287 (1012)
T KOG1445|consen  212 HGGM-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKL  287 (1012)
T ss_pred             cccc-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceE
Confidence            8765 33222233344466666544    46899998765542 22222 222555667899999988876   357788


Q ss_pred             EEEeCCCCeeee--EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceE-EEe---
Q 001490          534 VEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFN---  607 (1068)
Q Consensus       534 ~~wd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s---  607 (1068)
                      +.+.+.......  .++..-  .......+.-|....-+..++  ..+++.+.....+-.. .+  .+ -.+. .|+   
T Consensus       288 ~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~-y~--VP-RksyrdFH~DL  359 (1012)
T KOG1445|consen  288 FMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIP-YI--VP-RKSYRDFHSDL  359 (1012)
T ss_pred             EEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecc-cc--cc-hhhhhhhhhhh
Confidence            888876554321  111100  011122333333221111111  1123333222211110 00  00 0000 111   


Q ss_pred             -cCCCEEEEEECCCeEEEEECCCCceeeec------cccccc----ee--ee----EEcCCccccc-cccccCeeeecCC
Q 001490          608 -KNGTLLAVIANENRIKILETPESNSVDAA------GVLSDN----LR--KL----SVNPISTVTG-AGIANGSVSVNED  669 (1068)
Q Consensus       608 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~----i~--~~----~~~~~~~~~~-~~~~~~~~~~~~~  669 (1068)
                       |+..-...+...|   -|=..+++.++.+      +.|...    +.  .+    +|.+.....+ -++... ..-.++
T Consensus       360 fPeT~G~~p~~~ag---eWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n-~~~~~~  435 (1012)
T KOG1445|consen  360 FPETRGAEPGCTAG---EWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSN-NNSSSN  435 (1012)
T ss_pred             CccccCCccCcCcc---ceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCcccc-cccccc
Confidence             1111001111111   1111111111111      111000    00  00    0000000000 000000 000000


Q ss_pred             CCCCcccceeecccccceeecccccCCcccceeecC----CccccccEEEEEEecCCceEEEee----cC--ccEEEE--
Q 001490          670 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP----SKVKANKISRLTYNNGGQAIFALA----SN--GVHLMW--  737 (1068)
Q Consensus       670 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~----~d--g~i~iw--  737 (1068)
                      .-||-..--+......+|-.+....+..........    ..+...++..+  +|....++--.    .+  .+..+.  
T Consensus       436 ~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~--~~~~~~~~kP~S~plt~~~s~~s~~~P  513 (1012)
T KOG1445|consen  436 NVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTI--SPEPVTIVKPASTPLTDSVSTPSVVGP  513 (1012)
T ss_pred             CCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCcccc--CCCcccccCCCCcccccccccccccCc
Confidence            012210000000111111111110000000000000    00000111000  00000000000    00  000000  


Q ss_pred             ----eccCCccCCCcc---cee--------------ccCCcccCCCCCCceee----ecCCCCCCCCCeeEEEEecCCCE
Q 001490          738 ----RWPRNDLTLSTE---ATT--------------KVPPRLYQPRHGPQFMV----NDTTDSNSQEAVPCFALSKNDAY  792 (1068)
Q Consensus       738 ----~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~l~~s~dg~~  792 (1068)
                          .++......-|.   .+.              -+.+.-|.-..|.....    ..+...+..-+-.+--|..+.++
T Consensus       514 ~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~r  593 (1012)
T KOG1445|consen  514 AFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKR  593 (1012)
T ss_pred             cccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccce
Confidence                000000000000   000              00001111111110000    00000001111122335556677


Q ss_pred             EEEE---eCCeEEEEEccCc-eeEEE-ecC--CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-------eeeeee
Q 001490          793 LFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKL  858 (1068)
Q Consensus       793 l~~~---~dg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~~  858 (1068)
                      +|+-   +.|.|.||++... +.... +.+  ....|+.+.|.|.|...||++++||.|++|.+..+       .+...+
T Consensus       594 vAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l  673 (1012)
T KOG1445|consen  594 VAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL  673 (1012)
T ss_pred             EEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee
Confidence            7754   3689999999743 22211 111  34579999999999999999999999999999764       345678


Q ss_pred             cccccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEE
Q 001490          859 EGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA  936 (1068)
Q Consensus       859 ~~h~~~V~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~  936 (1068)
                      .+|...|+++.|+|= ...|++++.|.+|++||+.++.     ....+.+|..   .|..++|||||+++|+ +.|++++
T Consensus       674 t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  674 TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceEE
Confidence            899999999999994 4789999999999999999855     3444566765   8999999999999999 8999999


Q ss_pred             EEECCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEECCC----cEEEEEcCCCcEEEEeccccccCCCCccCcccceE
Q 001490          937 IYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1011 (1068)
Q Consensus       937 vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg----~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1068)
                      ||+.++++....--.+ -..+-..+.|.-||+++++.+-|.    .|.+||..+.....-.....       ...-.++.
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l-------Dvaps~Lv  818 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL-------DVAPSPLV  818 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee-------cccCcccc
Confidence            9999987654321211 234556788999999999888774    48888877654221111000       00111222


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCC
Q 001490         1012 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1049 (1068)
Q Consensus      1012 ~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~ 1049 (1068)
                      -.+++|.+-+|++|-.|..|++|++..+.|..-.+.+.
T Consensus       819 P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f  856 (1012)
T KOG1445|consen  819 PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF  856 (1012)
T ss_pred             ccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence            34666667889999999999999999998776655553

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.4e-31  Score=271.97  Aligned_cols=290  Identities=15%  Similarity=0.192  Sum_probs=253.7

Q ss_pred             eecCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccC-CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEE
Q 001490          367 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  444 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~  444 (1068)
                      .+.||...|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.+|..+|.+++|+++|.  .+++++.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            3789999999999999 899999999999999999987 55555   7889999999999999999  799999999999


Q ss_pred             EEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          445 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       445 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      +||+++|+++.++. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            99999999999986 56678899999875 47999999999999999999999999999999999999999999999998


Q ss_pred             eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCe---EEEEEeCCCCCCCC
Q 001490          525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN  601 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v  601 (1068)
                      .    +..+++|+...+..++....+.  .....++..+|+++++++-+.|+.|.++.+...-   ....+.+|.....-
T Consensus       362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            6    5579999999887776655444  3567789999999999999999999999875432   22344555444445


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeec
Q 001490          602 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  681 (1068)
Q Consensus       602 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  681 (1068)
                      ..+.|||||++|++|..||.+.+||..+.+.+..++.|.+.+..+.|.|.                     ....+++++
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~  494 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG  494 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence            67999999999999999999999999999999999999999999999874                     345689999


Q ss_pred             ccccceeec
Q 001490          682 AENKSEVEK  690 (1068)
Q Consensus       682 ~d~~i~~wd  690 (1068)
                      .+|.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=8.3e-30  Score=243.53  Aligned_cols=314  Identities=17%  Similarity=0.212  Sum_probs=244.7

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCccee-eeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      -...|..|+.++.+.+|||||. |+|+|+.|.+|+|.|++.--... ...+..-+.....+.++  .+-.|.+.|+++.|
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l~F  180 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDLDF  180 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccceee
Confidence            3456789999999999999997 89999999999999997210000 00000001111112222  26789999999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---  457 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---  457 (1068)
                      +|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|.  +|+.|....++++||+.+-++...-   
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcc
Confidence            999999999999999999999765433333233 3456899999999999  8999999999999999998875433   


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecC-CC-CcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      .+|.+.|+++.+++  .+.+.++++.||.|++||--+.+++..+.. |+ ..|.+..|+.+|+++++.+.    |..+++
T Consensus       258 ~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkL  331 (430)
T KOG0640|consen  258 DQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKL  331 (430)
T ss_pred             cccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeee
Confidence            46999999999865  778999999999999999888888776643 33 37999999999999999875    778999


Q ss_pred             EeCCCCeeeeEEecccccc--CCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCE
Q 001490          536 WNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  612 (1068)
Q Consensus       536 wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  612 (1068)
                      |.+.+++.+..+.|.....  ..-+...|+..+.+++.-. ..+.+.-||.+++..+..+.. ++...+..+.-||.+.-
T Consensus       332 WEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~  410 (430)
T KOG0640|consen  332 WEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPA  410 (430)
T ss_pred             eeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCc
Confidence            9999999999998753111  1223456777778887744 467899999999888777664 34467899999999999


Q ss_pred             EEEEECCCeEEEEECC
Q 001490          613 LAVIANENRIKILETP  628 (1068)
Q Consensus       613 l~~~~~dg~i~iwd~~  628 (1068)
                      +++++.|...++|--.
T Consensus       411 FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  411 FMTCSDDFRARFWYRR  426 (430)
T ss_pred             eeeecccceeeeeeec
Confidence            9999999999999643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7e-31  Score=243.44  Aligned_cols=291  Identities=16%  Similarity=0.220  Sum_probs=255.5

Q ss_pred             eecccCCCCceEEEEcC---CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          304 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       304 ~~l~~h~~~V~~v~~sp---dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .+-+||+.+|..++|||   +| ++|++++.|+.-.+-+-++|.-+.+                   +.||.+.|+...+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l   67 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL   67 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence            34479999999999984   77 6999999999999999999988876                   7899999999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-eeeEecc
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG  459 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~  459 (1068)
                      ..+..+-|+++.|-+.+|||.-+|..+..   + .|..-|.+++|+.|.+  +|++|+.++.++|+|++..+ +...+.+
T Consensus        68 ~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   68 NKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             Cchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence            99999999999999999999999987663   3 6889999999999999  79999999999999998754 4578899


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  539 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~  539 (1068)
                      |.+.|..+.|...  .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|.++..     +.|..||..
T Consensus       142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak  213 (334)
T KOG0278|consen  142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYG-----SSVKFWDAK  213 (334)
T ss_pred             CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence            9999999998763  468888899999999999999988877644 48999999999999988763     359999999


Q ss_pred             CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490          540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  619 (1068)
Q Consensus       540 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  619 (1068)
                      +-..++.+.-..    .|.+...+|+...+++|++|..++.||..++..+..+. .++..+|.++.|+|+|...++|+.|
T Consensus       214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence            999988887654    79999999999999999999999999999999998862 2345679999999999999999999


Q ss_pred             CeEEEEECCCCcee
Q 001490          620 NRIKILETPESNSV  633 (1068)
Q Consensus       620 g~i~iwd~~~~~~~  633 (1068)
                      |+|++|.+..++..
T Consensus       289 GTirlWQt~~~~~~  302 (334)
T KOG0278|consen  289 GTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEEecCCCch
Confidence            99999998766443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.9e-30  Score=236.54  Aligned_cols=268  Identities=20%  Similarity=0.313  Sum_probs=237.1

Q ss_pred             eeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490          366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       366 ~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i  445 (1068)
                      .++..|.++|.++.|+-||+|.++|+.|++|++|+...|.+++   ++.+|...|..++.+.|+.  .+++|+.|+.+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence            3477899999999999999999999999999999999998777   7889999999999999998  6999999999999


Q ss_pred             EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--ceEEecCCCCcEEEEEEccCCCEEEEE
Q 001490          446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC  523 (1068)
Q Consensus       446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~  523 (1068)
                      ||+.+|+.++.+.+|.+.|+.+.|+.  +...+++|+.|..+++||-++..  +++.+......|.++..+  +..+++|
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence            99999999999999999999999954  66799999999999999987654  455666666677777664  5677777


Q ss_pred             eeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490          524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       524 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                      +.    |++++.||++.|+....+-+     .+|+++.|+++++..++++-|+++++.|-.+|+++....+|.....-..
T Consensus       162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld  232 (307)
T KOG0316|consen  162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD  232 (307)
T ss_pred             cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence            75    77899999999998777776     4599999999999999999999999999999999999998877665567


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccc-eeeeEEcCC
Q 001490          604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPI  651 (1068)
Q Consensus       604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~  651 (1068)
                      ++++....++++|++||.+++||+.+...+..+..+... +..+++.|.
T Consensus       233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPT  281 (307)
T ss_pred             eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccC
Confidence            888888899999999999999999999999888887777 777888764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.9e-31  Score=258.39  Aligned_cols=275  Identities=16%  Similarity=0.259  Sum_probs=234.1

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  450 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~  450 (1068)
                      ....|.|+.+  |...+++|..|++|+|||.++-.+.+   .+.||++.|.|+.|.  .+  ++++|+.|.+|++||+++
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence            3468999988  46678999999999999999977666   678999999999984  45  899999999999999999


Q ss_pred             CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          451 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       451 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      |+++.++-+|...|..+.|+.    .++++++.|.++.+||+.....   ...+.+|...|+.+.|+.  ++++++++  
T Consensus       267 ge~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg--  338 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG--  338 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence            999999999999999999852    4999999999999999987664   336678888898888754  59998875  


Q ss_pred             CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490          528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  607 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  607 (1068)
                        |.+|++|++.+++.++++.+|.   ..|.|+.+  .++++++|+.|.+|++||+..|.++..+++|..  -|.++.|.
T Consensus       339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd  409 (499)
T KOG0281|consen  339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD  409 (499)
T ss_pred             --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence              7789999999999999999998   77888776  578999999999999999999999999998765  48899986


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCc---------eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccce
Q 001490          608 KNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  678 (1068)
Q Consensus       608 ~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  678 (1068)
                        .+.+++|+.||+|++||+..+.         ++..+..|.+.|..+.|.                        ...++
T Consensus       410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv  463 (499)
T KOG0281|consen  410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII  463 (499)
T ss_pred             --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence              6789999999999999998663         234455667777666664                        66789


Q ss_pred             eecccccceeecccccCCc
Q 001490          679 SVEAENKSEVEKPLFARPS  697 (1068)
Q Consensus       679 s~~~d~~i~~wd~~~~~~~  697 (1068)
                      +++.|.+|.+||+....+.
T Consensus       464 sssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  464 SSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             eccCCCeEEEEEcCCCCcc
Confidence            9999999999998755444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=4.4e-29  Score=304.93  Aligned_cols=294  Identities=14%  Similarity=0.172  Sum_probs=238.3

Q ss_pred             cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CC
Q 001490          306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  384 (1068)
Q Consensus       306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg  384 (1068)
                      +..|.+.|.+++|+|+|+ ++|+|+.|+.|+|||+.+...... .          .......+. +...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence            456899999999999998 779999999999999864211000 0          000001122 346899999987 47


Q ss_pred             CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC-CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490          385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  463 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  463 (1068)
                      .+||+++.||+|++||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999876544   6789999999999997 677  8999999999999999999998888754 67


Q ss_pred             EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-
Q 001490          464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-  541 (1068)
Q Consensus       464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-  541 (1068)
                      |.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++.    |+.|++||+..+ 
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~  693 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI  693 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence            88888854 367899999999999999998765 455677888899999997 7888988875    667999999743 


Q ss_pred             -----eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeC-----------CCCCCCCceEE
Q 001490          542 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC  605 (1068)
Q Consensus       542 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~  605 (1068)
                           ..+..+.+|.   ..+..+.|++++.+|++|+.|+.|++|+......+..+..           ..+...|.+++
T Consensus       694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence                 5677888887   8899999999999999999999999999876654433221           12234589999


Q ss_pred             EecCCCEEEEEECCCeEEEEEC
Q 001490          606 FNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       606 ~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      |+|++..|++++.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.4e-28  Score=266.86  Aligned_cols=285  Identities=23%  Similarity=0.342  Sum_probs=253.4

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +.+|..+|.+++|+|++++|++++.+|.|.+|++.+++...   .+..|...+..+.|+|+++  .+++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            56899999999999999999999999999999999876433   5678999999999999998  799999999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      +.+++.+..+..|...+.++.|++.  +.++++++.+|.|++||+.+.+....+..+...+.+++|+|++.++++++.  
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  155 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ--  155 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence            9998888999999999999999764  568888888999999999988888888888889999999999998888763  


Q ss_pred             CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490          528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  607 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  607 (1068)
                        ++.|++||+.+++.+..+..+.   ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.  ..+.+++|+
T Consensus       156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~  228 (289)
T cd00200         156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS  228 (289)
T ss_pred             --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence              5579999999998888888776   789999999999999999999999999999988888875443  368999999


Q ss_pred             cCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccce
Q 001490          608 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  687 (1068)
Q Consensus       608 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  687 (1068)
                      |++.++++++.++.+++|+..++.....+..+...+.++.++                      ++++.+++++.|+.++
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~  286 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR  286 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence            998888888889999999999988888888888888888886                      6688899999999999


Q ss_pred             eec
Q 001490          688 VEK  690 (1068)
Q Consensus       688 ~wd  690 (1068)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=248.93  Aligned_cols=290  Identities=17%  Similarity=0.226  Sum_probs=239.8

Q ss_pred             ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  788 (1068)
                      ....+.+..|||||+++++++-||.+.+|++...+...+-+..+.         ..  ++       -+...|.|+.||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~--fM-------Mmd~aVlci~FSR  273 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN--FM-------MMDDAVLCISFSR  273 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc--ee-------ecccceEEEeecc
Confidence            455678899999999999999999999999877655333332221         11  11       1678999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEEec-CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeE
Q 001490          789 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT  866 (1068)
Q Consensus       789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~  866 (1068)
                      |...+|+|+ ||.|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|--+++|++++.++||+.-|+
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            999999999 8999999999999999998 7999999999999 888999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC--CEEEEEeCCeEEEEECCCce
Q 001490          867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLAIYEAEELT  944 (1068)
Q Consensus       867 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~d~~i~vwd~~~~~  944 (1068)
                      ...|++||.++++++.||+|++|+.++.+     |+.++.... ...+|.++..-|.+  .++++...++++|.++. |+
T Consensus       353 ~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ  425 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ  425 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence            99999999999999999999999999966     443332211 12357777777764  34445677889999984 77


Q ss_pred             eeeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEE
Q 001490          945 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1022 (1068)
Q Consensus       945 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1022 (1068)
                      .++.+..|.  .+..-+.+.||.|.++.+.+.|+.++-+.+.+|.+...+..+.          -.++.++-+| +.+.+
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHP-HqNll  494 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHP-HQNLL  494 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCc-ccchh
Confidence            777765554  5667788899999999999999999999999999987777332          2344688899 78999


Q ss_pred             EEEeCCCcEEEEe
Q 001490         1023 AVGLTNGEVYVIE 1035 (1068)
Q Consensus      1023 ~~~~~dg~i~~w~ 1035 (1068)
                      ++-+.||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=9.4e-29  Score=231.35  Aligned_cols=279  Identities=17%  Similarity=0.239  Sum_probs=242.8

Q ss_pred             eecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-
Q 001490          304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  382 (1068)
Q Consensus       304 ~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-  382 (1068)
                      +.+.+|...|..|+|+.||. -||+|+.|+++.+|+++..+.+....                 ..+|.+.|..++|+| 
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~~~   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWDPK   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeCCC
Confidence            66789999999999999998 56999999999999999886554322                 678999999999998 


Q ss_pred             CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  462 (1068)
Q Consensus       383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  462 (1068)
                      ....+++++.|.+|++||+..+++...   .....+. ..+.|+|+|+  +++.++.|..|.+.|.++.+.....+ ...
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~---i~~~~en-i~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~  148 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTAR---IETKGEN-INITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF  148 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEE---eeccCcc-eEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence            578899999999999999999987653   3223333 4589999999  79999999999999999888776554 455


Q ss_pred             cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                      .+..++|+.  ++.+++.....|.|.|..+...+.+..+..|...+.|+.|+|+|+++++|+.    |..+.+||+..--
T Consensus       149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi  222 (313)
T KOG1407|consen  149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI  222 (313)
T ss_pred             eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence            677788874  4457777777899999999999999999999999999999999999999987    6679999999999


Q ss_pred             eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490          543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  619 (1068)
Q Consensus       543 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  619 (1068)
                      +++.+..+.   .+|+.+.|+.+|++|++||+|..|-|=++++|..+..++..+.   ...|+|+|...+||.+++|
T Consensus       223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence            999999888   9999999999999999999999999999999999999987754   5899999999999988775

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.8e-29  Score=255.03  Aligned_cols=285  Identities=19%  Similarity=0.232  Sum_probs=243.2

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      +.|. .|.+++|||...+=+|+.+. -.|.||+..+...++.                   +......|.++.|-.||++
T Consensus        24 ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~L   82 (487)
T KOG0310|consen   24 KEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRL   82 (487)
T ss_pred             cccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeE
Confidence            4554 99999999966654455443 6899999988776653                   3335578999999999999


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  466 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~  466 (1068)
                      ||+|+..|.|+|+|..+...++   .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.+
T Consensus        83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            9999999999999977644444   57799999999999999886 8999999999999999999987799999999999


Q ss_pred             EeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee-ee
Q 001490          467 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KR  545 (1068)
Q Consensus       467 i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~  545 (1068)
                      .+++|. ++.++++|+.||.|++||.+.......-..|+.+|..+.+-|.|..++++++     +.+++||+.+|.. +.
T Consensus       159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~qll~  232 (487)
T KOG0310|consen  159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQLLT  232 (487)
T ss_pred             eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCceehh
Confidence            999976 5579999999999999999998766666678889999999999999999874     4599999996654 44


Q ss_pred             EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001490          546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  625 (1068)
Q Consensus       546 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  625 (1068)
                      .+..|.   ..|+|+.+..++..|++|+-|+.+++||+.+.+.+..+...+   +|.+++.+|++..++.|..+|.+.+-
T Consensus       233 ~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  233 SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeee
Confidence            444466   899999999999999999999999999999999999998764   48999999999999999999988776


Q ss_pred             ECC
Q 001490          626 ETP  628 (1068)
Q Consensus       626 d~~  628 (1068)
                      +..
T Consensus       307 r~~  309 (487)
T KOG0310|consen  307 RRE  309 (487)
T ss_pred             hhh
Confidence            433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6.3e-28  Score=294.85  Aligned_cols=322  Identities=14%  Similarity=0.179  Sum_probs=248.2

Q ss_pred             cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCC----Ccc
Q 001490          332 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA  407 (1068)
Q Consensus       332 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~  407 (1068)
                      +|-+++|+..+.+.....              +..-+.+|...|.+++|+|+|++||+|+.|+.|+|||+.+.    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            577888888765443210              11114468999999999999999999999999999998642    111


Q ss_pred             c-ceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCc
Q 001490          408 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  486 (1068)
Q Consensus       408 ~-~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~  486 (1068)
                      . ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++++.||.
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 111233 3467999999886433 7999999999999999999999999999999999999854 5679999999999


Q ss_pred             EEEEeCCCCCceEEecCCCCcEEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCe-eeeEEeccccccCCeEEEEEec
Q 001490          487 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       487 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      |++||+.+......+..+ ..+.++.|+ +++.++++++.    ++.|++||++++. .+..+.+|.   ..|.++.|. 
T Consensus       600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-  670 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-  670 (793)
T ss_pred             EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence            999999988877766644 578899995 57899999875    6689999998765 466677777   889999997 


Q ss_pred             CCCEEEEEECCCeEEEEEcCCC------eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490          565 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  638 (1068)
Q Consensus       565 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1068)
                      ++.++++++.|++|++||+..+      ..+..+..|.  ..+..++|+|++.+|++|+.|+.|++|+............
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence            6789999999999999999743      4566676553  4578899999999999999999999999765433221110


Q ss_pred             cc-cceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEE
Q 001490          639 LS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  717 (1068)
Q Consensus       639 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~  717 (1068)
                      .. ..+.                                                        .  .....+...|.+++
T Consensus       749 ~~~~~~~--------------------------------------------------------~--~~~~~~~~~V~~v~  770 (793)
T PLN00181        749 KTIDPVS--------------------------------------------------------G--LEVDDASQFISSVC  770 (793)
T ss_pred             ccCCccc--------------------------------------------------------c--cccCCCCcEEEEEE
Confidence            00 0000                                                        0  00011456799999


Q ss_pred             EecCCceEEEeecCccEEEEec
Q 001490          718 YNNGGQAIFALASNGVHLMWRW  739 (1068)
Q Consensus       718 ~s~~g~~l~~~~~dg~i~iw~~  739 (1068)
                      |++++..+++++.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999985

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.2e-27  Score=218.37  Aligned_cols=310  Identities=17%  Similarity=0.208  Sum_probs=241.0

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ..++.+|...+ .|.+++|+|.|. |.|+|+..++.+|-....-..++...    +.....+......-+.|.+.|.|.+
T Consensus        23 f~~i~~l~dsq-airav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~   96 (350)
T KOG0641|consen   23 FEAINILEDSQ-AIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTA   96 (350)
T ss_pred             eEEEEEecchh-heeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEE
Confidence            35667777654 899999999998 78999999999988764322221100    0000001112222567999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEcc--CCCcccceEEEccccccEEEEEEcCC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR  453 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~~--~~~~~~~~~~~~~h~~~v~~l~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~  453 (1068)
                      |||+|.+||+|+.|++|++.-.+  +.+......++.-|.+.|..++|..+   +.. +|++++ .|..|++-|..+|+.
T Consensus        97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence            99999999999999999987554  43334445578889999999999654   222 566654 577899999999999


Q ss_pred             eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC-------CCcEEEEEEccCCCEEEEEeeC
Q 001490          454 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      .+.+.+|.+.|.++- ++  ++.++++|+.|.+|++||++-..++..+...       ...|.+++..|.|++|+++.. 
T Consensus       176 ~~a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-  251 (350)
T KOG0641|consen  176 FHALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-  251 (350)
T ss_pred             ceeecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence            999999999998874 22  6679999999999999999988777655332       246899999999999999876 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCCCCCCc
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP  602 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~  602 (1068)
                         +....+||++.++.++.|..|.   ..|.++.|+|...++++++.|..|++-|+...    -++....  .+...+.
T Consensus       252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i  323 (350)
T KOG0641|consen  252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAI  323 (350)
T ss_pred             ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceE
Confidence               5669999999999999999988   99999999999999999999999999998642    1122222  2334577


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEECC
Q 001490          603 RICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       603 ~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      .+.|+|..--+++.+.|.+..+|.+.
T Consensus       324 ~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  324 QCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEecCccceeeeccCcceEEEeccC
Confidence            89999999899999999999999764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.5e-30  Score=253.24  Aligned_cols=297  Identities=16%  Similarity=0.228  Sum_probs=256.5

Q ss_pred             CCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcce
Q 001490          296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  375 (1068)
Q Consensus       296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  375 (1068)
                      ..+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++....                 ..|.|..+.|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i  222 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI  222 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence            5678899999999999999999999965 469999999999999987763221                 1177888899


Q ss_pred             EEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490          376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                      +.+.|.++++++++++.|+.+++|++...+...   ++.+|++.|+++.|.....  .+++|+.|.+|++||+..+.+.+
T Consensus       223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence            999999999999999999999999999876554   7889999999999998776  59999999999999999988887


Q ss_pred             EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       456 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      ++- ....+..|+..    ...+++|-.|+.|++||.++.........++ .|+++..++++..+.+++.    +..+.+
T Consensus       298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v  367 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV  367 (459)
T ss_pred             ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence            664 33445555543    3478899999999999999999988888776 9999999999999999976    667999


Q ss_pred             EeCCCCeeeeEEeccccc-cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          536 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       536 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      .|+++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+........|.+++|+|.|..++
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence            999999888887654321 2348889999999999999999999999999999999998776655799999999999999


Q ss_pred             EEECCCeEEEE
Q 001490          615 VIANENRIKIL  625 (1068)
Q Consensus       615 ~~~~dg~i~iw  625 (1068)
                      +++.++.+.+|
T Consensus       448 sadk~~~v~lW  458 (459)
T KOG0288|consen  448 SADKQKAVTLW  458 (459)
T ss_pred             cccCCcceEec
Confidence            99999999998

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.4e-28  Score=272.51  Aligned_cols=306  Identities=19%  Similarity=0.248  Sum_probs=248.2

Q ss_pred             CCCCceEEEEcCCCCeEEEEEc--CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      +...|..+..+|||. .+|+|+  .|+.++||+.+.--...    +-++..   .+-..-....|.+.|.|+.|||||+|
T Consensus        12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~----~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEK----EEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCce-eEecCCccccccceeeccccccchh----hhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            455689999999998 569999  89999999975411000    011111   00011125679999999999999999


Q ss_pred             EEEEeCCcEEEEEEccC----------C-----CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          387 LGVAYSKHIVQLYAYHG----------G-----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~----------~-----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      ||+|+.|+.|.||+...          |     +..+....+.+|...|..++|+|++.  ++++++.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999873          1     01234557889999999999999999  9999999999999999999


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC------CcEEEEEEccCCCEEEEEee
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCGT  525 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~d~~~l~~~~~  525 (1068)
                      +.+..+.+|.+.|..+.|.|  -|+++++-+.|++|++|+...-+....+..+-      ..+..+.|||||++|++...
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            99999999999999999965  77899999999999999977655555544332      25788999999999999887


Q ss_pred             CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC-------------CC----EEEEEECCCeEEEEEcCCCeE
Q 001490          526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-------------KD----QILAAGDDHVIKIWDMNKVQL  588 (1068)
Q Consensus       526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~s~dg~i~iwd~~~~~~  588 (1068)
                      -+.+...+.|.+-.+.+.-..+.||.   .++.++.|+|.             .+    .+++|+.|++|.||.....++
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP  316 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP  316 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence            77778889999998888889999999   89999999982             11    456699999999999988887


Q ss_pred             EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          589 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       589 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      +.....-.. ..|..++|+|||..|++++.||+|.+...+..
T Consensus       317 l~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  317 LFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            766543222 35899999999999999999999999998854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-27  Score=224.92  Aligned_cols=287  Identities=10%  Similarity=0.093  Sum_probs=238.7

Q ss_pred             ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCC
Q 001490          305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  384 (1068)
Q Consensus       305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg  384 (1068)
                      .|.||..+++.+.|..+|. ||.+++.|.++.||-..+|+.+.+                   +.||.+.|+|+..+.+.
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s   64 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS   64 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence            3689999999999999998 889999999999999999999987                   88999999999999999


Q ss_pred             CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001490          385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS  452 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~  452 (1068)
                      +++++|+.|.++++||+++|+++..   + ....+|..+.|+++|.  +++...     ..+.|.++|++       ..+
T Consensus        65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            9999999999999999999987653   2 3456899999999999  344333     34579999987       445


Q ss_pred             eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEccCCCEEEEEeeCCCCce
Q 001490          453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  531 (1068)
Q Consensus       453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~  531 (1068)
                      +...+..+...++.+.|.+  -+++|++|.+||.|..||++++.... ....|...|+.+.+++|..++++++.    |.
T Consensus       139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt  212 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT  212 (327)
T ss_pred             ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence            6778888999999999977  45799999999999999999976554 55778889999999999999999986    66


Q ss_pred             eEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEE--EEcCCC------------eEEEEEeCCCC
Q 001490          532 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--WDMNKV------------QLLTTIDAGGG  597 (1068)
Q Consensus       532 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--wd~~~~------------~~~~~~~~~~~  597 (1068)
                      +-.+||..+-+.++++....    +|++.+++|....++.|+.....-+  =+.+.|            +.+..+++  |
T Consensus       213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H  286 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H  286 (327)
T ss_pred             cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence            79999999999999998754    9999999999888888653322211  111222            33344444  4


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490          598 LPENPRICFNKNGTLLAVIANENRIKILETPE  629 (1068)
Q Consensus       598 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  629 (1068)
                      ..+|++++|+|+|+..++|+.||.|++...+.
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            66799999999999999999999999986653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=1.1e-28  Score=228.86  Aligned_cols=290  Identities=16%  Similarity=0.256  Sum_probs=245.8

Q ss_pred             ceEEecCCCCcEEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE
Q 001490          497 ARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  573 (1068)
Q Consensus       497 ~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s  573 (1068)
                      ......+|..+|..++|||   +|-+|++++.    |+.-.+-+-.+|..+.+|.+|.   +.|++...+.+....++++
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pmlr~g~tgdwigtfeghk---gavw~~~l~~na~~aasaa   78 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPMLRNGDTGDWIGTFEGHK---GAVWSATLNKNATRAASAA   78 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchhccCCCCCcEEeeeccC---cceeeeecCchhhhhhhhc
Confidence            3455667888999999976   8889998876    4446677788999999999999   9999999999888888999


Q ss_pred             CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce-eeeccccccceeeeEEcCCc
Q 001490          574 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLRKLSVNPIS  652 (1068)
Q Consensus       574 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~  652 (1068)
                      .|-+-++||.-+|..+..+...   ..|..++|+.|.++|++|+.+..++|||+..... ...+                
T Consensus        79 adftakvw~a~tgdelhsf~hk---hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~----------------  139 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGDELHSFEHK---HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI----------------  139 (334)
T ss_pred             ccchhhhhhhhhhhhhhhhhhh---heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh----------------
Confidence            9999999999999999988643   3489999999999999999999999999875421 1111                


Q ss_pred             cccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCc
Q 001490          653 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  732 (1068)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  732 (1068)
                                                                            .+|.+.|+.+.|....+.+++.+.++
T Consensus       140 ------------------------------------------------------~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen  140 ------------------------------------------------------SGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             ------------------------------------------------------cCCCCcceeEEEeccCceEEeeccCC
Confidence                                                                  23677788888888888888888889


Q ss_pred             cEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeE
Q 001490          733 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI  812 (1068)
Q Consensus       733 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~  812 (1068)
                      +||+||...                      |.......     ...+|+++.+++||++|.++..+.|.+||..+...+
T Consensus       166 tVRLWD~rT----------------------gt~v~sL~-----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  166 TVRLWDHRT----------------------GTEVQSLE-----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL  218 (334)
T ss_pred             ceEEEEecc----------------------CcEEEEEe-----cCCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence            998887543                      33333333     467899999999999999999999999999999998


Q ss_pred             EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001490          813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  891 (1068)
Q Consensus       813 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~  891 (1068)
                      ..++ -...|.+..++| +..++++|+.|..++.||..+|+.+..+ ++|.++|.|+.|+|||...++||+||+|+||..
T Consensus       219 Ks~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  219 KSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             eecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            8876 456789999999 7789999999999999999999999886 899999999999999999999999999999998


Q ss_pred             CCCc
Q 001490          892 DGWG  895 (1068)
Q Consensus       892 ~~~~  895 (1068)
                      ..++
T Consensus       297 ~~~~  300 (334)
T KOG0278|consen  297 TPGK  300 (334)
T ss_pred             cCCC
Confidence            7654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.8e-26  Score=223.74  Aligned_cols=286  Identities=16%  Similarity=0.239  Sum_probs=235.9

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      ..-...|.++.|+++|. ++++++.|.+++|||..+|++++.                   +..++..|..+.|......
T Consensus        11 ~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~   70 (311)
T KOG1446|consen   11 RETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNT   70 (311)
T ss_pred             ccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCce
Confidence            33455899999999998 567788889999999999999876                   4456678889999888877


Q ss_pred             EEEEeC--CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490          387 LGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  464 (1068)
Q Consensus       387 las~~~--d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  464 (1068)
                      ++.++.  |.+|+.-++.+++.++   -+.||...|.+++.+|-+.  .+++++.|++|++||++..++...+.....++
T Consensus        71 ~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi  145 (311)
T KOG1446|consen   71 VIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI  145 (311)
T ss_pred             EEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence            777766  7899999999988776   7899999999999999998  89999999999999999888877775544444


Q ss_pred             EEEeeeecCCccEEEEEEcCCcEEEEeCCCCC--ceEEecC---CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490          465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  539 (1068)
Q Consensus       465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~  539 (1068)
                        ++|  ++.|-++|++...+.|++||++...  +...+..   .....+.+.|||||++++.+..    .+.+++.|.-
T Consensus       146 --~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf  217 (311)
T KOG1446|consen  146 --AAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAF  217 (311)
T ss_pred             --eeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEcc
Confidence              355  4477788888888899999998752  2333333   3557899999999999998875    6679999999


Q ss_pred             CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490          540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  619 (1068)
Q Consensus       540 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  619 (1068)
                      +|..+.++.++......-...+|+||++++++|+.||+|.+|+++++..+..+.+. ....+.++.|+|.-..+++++  
T Consensus       218 ~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--  294 (311)
T KOG1446|consen  218 DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--  294 (311)
T ss_pred             CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--
Confidence            99999999988854444467889999999999999999999999999999999875 345688999999877777655  


Q ss_pred             CeEEEEECC
Q 001490          620 NRIKILETP  628 (1068)
Q Consensus       620 g~i~iwd~~  628 (1068)
                      ..+.+|-..
T Consensus       295 s~l~fw~p~  303 (311)
T KOG1446|consen  295 SNLVFWLPD  303 (311)
T ss_pred             ceEEEEecc
Confidence            467777654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=3.9e-27  Score=221.21  Aligned_cols=287  Identities=13%  Similarity=0.163  Sum_probs=239.9

Q ss_pred             eeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490          366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       366 ~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i  445 (1068)
                      ..+.||+.+++.+.++.+|.+|.+|+.|.++.||--..|+.+.   ++.||.+.|+|+..+-+.+  .+++|+.|.++++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kL   78 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKL   78 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEE
Confidence            3488999999999999999999999999999999998888666   7889999999999999999  8999999999999


Q ss_pred             EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-----CCcEEEEeCC-------CCCceEEecCCCCcEEEEEE
Q 001490          446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAY  513 (1068)
Q Consensus       446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~  513 (1068)
                      ||+++|+++..++ ...+|..+.|++  +|.+++....     .+.|.++|++       ..++...+..+...++.+-|
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            9999999999987 677899999977  4455555543     3579999987       44556778888899999999


Q ss_pred             ccCCCEEEEEeeCCCCceeEEEEeCCCCee-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490          514 SANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  592 (1068)
Q Consensus       514 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  592 (1068)
                      +|-+++|++|..    ++.|.+||.++|.. +..-+.|.   ..|+.+.++++..++++++.|.+-++||..+.+.+.++
T Consensus       156 g~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  156 GPLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             cccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence            999999999986    56699999999854 44445555   79999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE--CCC------------CceeeeccccccceeeeEEcCCccccccc
Q 001490          593 DAGGGLPENPRICFNKNGTLLAVIANENRIKILE--TPE------------SNSVDAAGVLSDNLRKLSVNPISTVTGAG  658 (1068)
Q Consensus       593 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd--~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  658 (1068)
                      ...   .++++.+++|...+++.|+.....-+=-  .+.            .+.+...++|.++|++++++         
T Consensus       229 ~te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------  296 (327)
T KOG0643|consen  229 TTE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------  296 (327)
T ss_pred             eec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC---------
Confidence            765   4589999999877777765432222211  111            24456778999999999996         


Q ss_pred             cccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490          659 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  692 (1068)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~  692 (1068)
                                   |+|+..++|+.||.||+...+
T Consensus       297 -------------PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 -------------PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             -------------CCCcccccCCCCceEEEEEec
Confidence                         789999999999999997544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.4e-28  Score=264.90  Aligned_cols=310  Identities=16%  Similarity=0.212  Sum_probs=225.6

Q ss_pred             ceeeecc-cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          301 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       301 ~~~~~l~-~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ...+.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+.......   +.. | ..+.   +.+ ...+..+.
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~---~~~-~-~~~~---~~~-~s~~~p~~  326 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEG---DSS-C-MYFE---YNA-NSQIEPST  326 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhccccc---ccc-h-hhhh---hhh-ccccCccc
Confidence            4456667 8999999999999998 779999999999999977444221000   000 0 0000   000 00011111


Q ss_pred             ECC---CCC--EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490          380 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  454 (1068)
Q Consensus       380 ~sp---dg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  454 (1068)
                      -++   .++  ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++   +|++++.|++|++|++....++
T Consensus       327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL  403 (712)
T KOG0283|consen  327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL  403 (712)
T ss_pred             cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence            111   011  11112222222221111111123344788999999999999877   6999999999999999999999


Q ss_pred             eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                      +.|. |...|+|++|+|. |.+++++|+-||.||+|++...+...-...+ .-|++++|.|||++.++|+.    +|..+
T Consensus       404 ~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~  476 (712)
T KOG0283|consen  404 KVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCR  476 (712)
T ss_pred             eEEe-cCCeeEEEEeccc-CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEE
Confidence            9996 9999999999998 5579999999999999999876655544444 68999999999999999997    66799


Q ss_pred             EEeCCCCeeeeEEecccc-----ccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          535 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       535 ~wd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      +|+....+....+.-+..     ....|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence            999887776655443221     12469999999754 358899999999999999999999998776666667889999


Q ss_pred             CCCEEEEEECCCeEEEEECCCC
Q 001490          609 NGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       609 ~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      ||++|+++++|..|++|+....
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCC
Confidence            9999999999999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.6e-27  Score=234.92  Aligned_cols=282  Identities=20%  Similarity=0.364  Sum_probs=233.1

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC---C
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G  384 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd---g  384 (1068)
                      -|.+.|.++...  ++ .+.+|+.||.++|||.. |+....                   +.||.++|.+++|--.   .
T Consensus       103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~  159 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS  159 (423)
T ss_pred             cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence            578899999998  44 56999999999999975 554443                   7899999998888543   3


Q ss_pred             CEEEEEeCCcEEEEEEccCCCcc-cceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC--------------
Q 001490          385 SLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--------------  449 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~--------------  449 (1068)
                      ..+++++.|.++++|.++.++.. .......||...|.+++..++|.  .+++|+.|.+|.||+..              
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence            35999999999999999887642 22223459999999999999999  89999999999999932              


Q ss_pred             -----------CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC
Q 001490          450 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR  518 (1068)
Q Consensus       450 -----------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~  518 (1068)
                                 ++.++.++.||.++|.++.|.+   ...+++++.|.+|+.||+.+++....+... ..+.++.++|..+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence                       1234567889999999999975   348999999999999999999887776543 4789999999999


Q ss_pred             EEEEEeeCCCCceeEEEEeCCCCe---eeeEEeccccccCCeEEEEEecCCCE-EEEEECCCeEEEEEcCCCe-EEEEEe
Q 001490          519 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID  593 (1068)
Q Consensus       519 ~l~~~~~~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~  593 (1068)
                      +|++++.    +..+++||.+++.   ....|.+|.   +.|.++.|+|...+ +++|+.|+++++||+++.. ++..+.
T Consensus       314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            9999986    6679999999763   456778888   89999999998665 5669999999999999877 888888


Q ss_pred             CCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490          594 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       594 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      .|.  ..|.++.|+. +..+++|+.|++|+|+...
T Consensus       387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            774  4588888875 6699999999999998654

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.5e-26  Score=258.90  Aligned_cols=289  Identities=12%  Similarity=0.122  Sum_probs=224.6

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CCCEE
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  387 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg~~l  387 (1068)
                      |-..|....+++|+..+ ++++.+..+..|+...|..+.      +.............+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            44578888889997644 666777888899877654321      11111111222334789999999999999 89999


Q ss_pred             EEEeCCcEEEEEEccCCCc----ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490          388 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  463 (1068)
Q Consensus       388 as~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  463 (1068)
                      |+|+.|++|++||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999987532    1234468899999999999998643 7999999999999999999999999999999


Q ss_pred             EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCc-EEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490          464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                      |.+++|++  +|.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999977  6789999999999999999998888787777654 45678899988888877665567889999998754


Q ss_pred             -eeeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490          543 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       543 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                       .......+.  ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus       249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~  315 (493)
T PTZ00421        249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW  315 (493)
T ss_pred             CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence             333333222  24566678999999999887 59999999999998877765432 2457788888853

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.6e-27  Score=267.10  Aligned_cols=306  Identities=17%  Similarity=0.234  Sum_probs=239.8

Q ss_pred             ccccEEEEEEecCCceEEEee--cCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEE
Q 001490          709 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  786 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  786 (1068)
                      +...|.++..+|+|..+++++  .||.++||+...--.          ....++..-...+.+..    .|...|.|+.|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m~----~h~~sv~CVR~   77 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTMD----DHDGSVNCVRF   77 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheeec----cccCceeEEEE
Confidence            455699999999999999999  889999998653211          01111211111111111    38999999999


Q ss_pred             ecCCCEEEEEeC-CeEEEEEccC------------------ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEE
Q 001490          787 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  847 (1068)
Q Consensus       787 s~dg~~l~~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  847 (1068)
                      +|||++||+|+| +.|.||+...                  ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence            999999999995 6789998762                  346778999999999999999 99999999999999999


Q ss_pred             EcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEE
Q 001490          848 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  927 (1068)
Q Consensus       848 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  927 (1068)
                      +..+.+.+.++++|.+.|..+.|.|-|++||+-+.|++|+||++.+....+  .+..+..+......+..+.|||||++|
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l  234 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL  234 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence            999999999999999999999999999999999999999999987744333  333333333333468899999999999


Q ss_pred             EE--EeC---CeEEEEECCCceeeeeeccCCCcCEEEEEEec--------CC-----C----EEEEEECCCcEEEEEcCC
Q 001490          928 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN  985 (1068)
Q Consensus       928 a~--~~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~dg~v~vwd~~~  985 (1068)
                      ++  +.+   ..+.|.+-.+-+.-.. +.||..++..++|.|        +|     .    .+|+|+.|++|.||....
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            98  322   3588888766555554 668999999999998        11     1    578999999999999988


Q ss_pred             CcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001490          986 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus       986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
                      .+++....       ...+  -..+.++|+| ||-.|++++.||+|.+..+.+.+-.
T Consensus       314 ~RPl~vi~-------~lf~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  314 PRPLFVIH-------NLFN--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             CCchhhhh-------hhhc--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence            88774443       1111  2346899999 7999999999999999999876643

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=7.6e-28  Score=230.17  Aligned_cols=308  Identities=13%  Similarity=0.199  Sum_probs=237.0

Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCccc
Q 001490          597 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  676 (1068)
Q Consensus       597 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1068)
                      +..++.+.+|++||.++++|+.|..|+|+|++..-...   .+.+                                   
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~~e-----------------------------------  152 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KPKE-----------------------------------  152 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---chhh-----------------------------------
Confidence            34568999999999999999999999999988431110   0000                                   


Q ss_pred             ceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCC
Q 001490          677 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP  756 (1068)
Q Consensus       677 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  756 (1068)
                      +..+..+              +...+....-.|...|+.+.|.|....|++++.|++++++|+........        .
T Consensus       153 m~~~~~q--------------a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------~  210 (430)
T KOG0640|consen  153 MISGDTQ--------------ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------F  210 (430)
T ss_pred             hccCCcc--------------cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------H
Confidence            0000000              00000111112888999999999999999999999999999876432110        1


Q ss_pred             cccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEec---CCCCCeEEEEEeCCCC
Q 001490          757 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDN  832 (1068)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~  832 (1068)
                      +++                ....+|+++.|+|.|.+|++|.| .++++||++|.++...-.   .|.+.|+++.+|+ .+
T Consensus       211 K~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~  273 (430)
T KOG0640|consen  211 KVF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TG  273 (430)
T ss_pred             HHh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Cc
Confidence            111                15678999999999999999997 789999999998876543   5788999999999 99


Q ss_pred             CEEEEEECCCeEEEEEcCCceeeeeec-cccc-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc
Q 001490          833 NVIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  910 (1068)
Q Consensus       833 ~~lasg~~dg~v~iwd~~~~~~~~~~~-~h~~-~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  910 (1068)
                      ++.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|.+|++|.+.++.......=....+...
T Consensus       274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~  353 (430)
T KOG0640|consen  274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK  353 (430)
T ss_pred             cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence            999999999999999999999998885 4654 78999999999999999999999999999976433221111112111


Q ss_pred             CCCCceEEEEeeCCCEEEEE--eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490          911 LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       911 ~~~~v~~~~~spdg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~  984 (1068)
                         --+...|.....+++.-  ..+.+.-||.+++..+..+..+|++.+..+.-||.+.-+.||+.|..+++|--.
T Consensus       354 ---~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  354 ---HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ---hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence               23456777778887773  456799999999999998889999999999999999999999999999999643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=9.5e-27  Score=260.12  Aligned_cols=284  Identities=17%  Similarity=0.288  Sum_probs=248.5

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      .|...+.+..|+ ++  .+.+|+.|++|.+||..++..+..                  .+.||.+.|.+++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            356689999999 45  469999999999999999987753                  177999999999999889999


Q ss_pred             EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  467 (1068)
Q Consensus       388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i  467 (1068)
                      ++|+.|.++++||+.+|++..   .+.+|...|.++...+.    ++++|+.|.+|++|++.++..+..+.+|.++|+++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999998777   78899999999987543    68889999999999999999999999999999999


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeE
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT  546 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~  546 (1068)
                      ...    +.++++|+.|++|++||+.+.+++..+.+|...|.++.+.+. ..+++|+.    |..|++||+.++ +++.+
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence            874    569999999999999999999999999999999999987766 88999887    567999999999 99999


Q ss_pred             EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490          547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  626 (1068)
Q Consensus       547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  626 (1068)
                      +.+|.   ..+..+.+  .++++++++.|++|++||..+++++..+... +...|..+++.  ...+++++.|+.+++||
T Consensus       409 l~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  409 LQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             hcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99988   66655444  5689999999999999999999999999874 23345666655  46899999999999999


Q ss_pred             CCCCceeeec
Q 001490          627 TPESNSVDAA  636 (1068)
Q Consensus       627 ~~~~~~~~~~  636 (1068)
                      ++++.....+
T Consensus       481 l~~~~~~~~l  490 (537)
T KOG0274|consen  481 LRSGTLIRTL  490 (537)
T ss_pred             cccCchhhhh
Confidence            9998777655

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=236.96  Aligned_cols=282  Identities=15%  Similarity=0.207  Sum_probs=231.7

Q ss_pred             ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  788 (1068)
                      ..+.|.+++|+|...+=++.+..-.+.||+......                      ...  +.  .....+.++.|..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~s--rFk~~v~s~~fR~   78 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--FS--RFKDVVYSVDFRS   78 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--HH--hhccceeEEEeec
Confidence            456899999999877666666666777776433211                      100  00  1456789999999


Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEE
Q 001490          789 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  867 (1068)
Q Consensus       789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~  867 (1068)
                      ||+++|.|+ .|.|+|||+++...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|++.|.+
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            999999998 4999999988877888999999999999999999999999999999999999999887789999999999


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceee
Q 001490          868 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  946 (1068)
Q Consensus       868 l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~  946 (1068)
                      .+|+|- +.+++|||.||+|++||+....   ......-.+     .+|..+.|-|.|..+|+++.+.++|||+.+|...
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999996 4589999999999999998743   122222222     3699999999999999999999999999966655


Q ss_pred             eeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001490          947 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1026 (1068)
Q Consensus       947 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 1026 (1068)
                      ......|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+..           +...++++.+| |++.++.|.
T Consensus       231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~pvLsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PGPVLSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------ccceeeEEecC-CCceEEEec
Confidence            544556999999999999999999999999999999999999987761           12356778888 679999999


Q ss_pred             CCCcEEEEeC
Q 001490         1027 TNGEVYVIEP 1036 (1068)
Q Consensus      1027 ~dg~i~~w~~ 1036 (1068)
                      .||.+.+=+.
T Consensus       299 snGlv~~rr~  308 (487)
T KOG0310|consen  299 SNGLVSIRRR  308 (487)
T ss_pred             ccceeeeehh
Confidence            9999877643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-25  Score=216.86  Aligned_cols=271  Identities=16%  Similarity=0.190  Sum_probs=229.0

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC--CCcEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV  445 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~--d~~i~i  445 (1068)
                      +..-...|.++.|+++|.+|++++.|.+++|||..+++.++   ++..+...|..++|.....  .++.++.  |.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence            44467899999999999999999999999999999998766   6667777899999988777  4555554  889999


Q ss_pred             EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEee
Q 001490          446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  525 (1068)
Q Consensus       446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~  525 (1068)
                      .++.+.+.++.|.||...|.+++.+|.+  ..+++++.|++|++||++..+++..+.....++  .+|.|.|-.+|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence            9999999999999999999999998865  599999999999999999888887776666555  689999999999875


Q ss_pred             CCCCceeEEEEeCCCC--eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCC-c
Q 001490          526 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P  602 (1068)
Q Consensus       526 ~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~  602 (1068)
                          ...|.+||++.-  .+..++.-......+...+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus       161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence                236999999853  444555444333478899999999999999999999999999999999988766543322 4


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc-cccceeeeEEcCC
Q 001490          603 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI  651 (1068)
Q Consensus       603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~  651 (1068)
                      ..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|.
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR  286 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence            778999999999999999999999999999999888 5777888887754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-26  Score=247.73  Aligned_cols=279  Identities=18%  Similarity=0.266  Sum_probs=241.0

Q ss_pred             ceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC
Q 001490          313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  392 (1068)
Q Consensus       313 V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~  392 (1068)
                      ..-+.||..+  +||+|.. ..|.+|+..+++......                   -++..|+++.|+++|.+||+|..
T Consensus       180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l~~-------------------~~~~~vtSv~ws~~G~~LavG~~  237 (484)
T KOG0305|consen  180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTELCS-------------------FGEELVTSVKWSPDGSHLAVGTS  237 (484)
T ss_pred             hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEeEe-------------------cCCCceEEEEECCCCCEEEEeec
Confidence            4457888655  5677764 689999999998664322                   24789999999999999999999


Q ss_pred             CcEEEEEEccCCCcccceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE-eccCCCcEEEEeee
Q 001490          393 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH  470 (1068)
Q Consensus       393 d~~i~vwd~~~~~~~~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~i~~~  470 (1068)
                      +|.|.|||..+.+.++   .+.+ |...|.+++|.  +.  .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus       238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS  310 (484)
T ss_pred             CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence            9999999999877666   5667 99999999998  34  799999999999999998876655 88999999999996


Q ss_pred             ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEec
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  549 (1068)
Q Consensus       471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~  549 (1068)
                      +  |+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++  ..|+.|++||..+|..+.....
T Consensus       311 ~--d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt  386 (484)
T KOG0305|consen  311 P--DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT  386 (484)
T ss_pred             C--CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence            6  778999999999999999988899999999999999999999 5567777764  4588999999999998887765


Q ss_pred             cccccCCeEEEEEecCCCEEEE--EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          550 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       550 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      .    ..|.++.|++..+.+++  |..++.|.||+..+.+.+..+.+|.  ..|..++++|||..+++|+.|.++++|++
T Consensus       387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            3    58999999999887777  5577899999999999999988774  46999999999999999999999999998


Q ss_pred             CCC
Q 001490          628 PES  630 (1068)
Q Consensus       628 ~~~  630 (1068)
                      -+.
T Consensus       461 f~~  463 (484)
T KOG0305|consen  461 FDE  463 (484)
T ss_pred             cCC
Confidence            764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.8e-26  Score=213.97  Aligned_cols=279  Identities=13%  Similarity=0.218  Sum_probs=234.8

Q ss_pred             eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEE
Q 001490          545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIK  623 (1068)
Q Consensus       545 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~  623 (1068)
                      +.+++|.   ..+.+++|+.+|..+++|+.|+++.+|+++..+........++...|-.++|+| ...++++++.|.+|+
T Consensus        14 r~~~~~~---~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   14 RELQGHV---QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HHhhhhh---hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            4455666   889999999999999999999999999999988887777777777888999998 677999999999999


Q ss_pred             EEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceee
Q 001490          624 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  703 (1068)
Q Consensus       624 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  703 (1068)
                      +||...+++........+.+. +.+                      +|+|.+++.+..|..|.+.|...........  
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~-i~w----------------------sp~g~~~~~~~kdD~it~id~r~~~~~~~~~--  145 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENIN-ITW----------------------SPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--  145 (313)
T ss_pred             EEEeccCcEEEEeeccCcceE-EEE----------------------cCCCCEEEEecCcccEEEEEecccceeehhc--
Confidence            999999988877765554442 223                      5889999999999999999876544333222  


Q ss_pred             cCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeE
Q 001490          704 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  783 (1068)
Q Consensus       704 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  783 (1068)
                           ....+..+.|+.++..++.....|.|.|..++.-+.                      +..+    ..|.....|
T Consensus       146 -----~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp----------------------v~si----~AH~snCic  194 (313)
T KOG1407|consen  146 -----FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP----------------------VQSI----KAHPSNCIC  194 (313)
T ss_pred             -----ccceeeeeeecCCCCEEEEecCCceEEEEecccccc----------------------cccc----ccCCcceEE
Confidence                 234567789998899888888889999988763211                      1111    148889999


Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc
Q 001490          784 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS  862 (1068)
Q Consensus       784 l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~  862 (1068)
                      +.|+|+|+|+|+|+ |..+.+||++..-+.+.+..+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.
T Consensus       195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~  272 (313)
T KOG1407|consen  195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CE  272 (313)
T ss_pred             EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-cc
Confidence            99999999999998 78899999999999999999999999999999 99999999999999999999999998888 88


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCC
Q 001490          863 KRVTGLVFSDALNILVSSGGDA  884 (1068)
Q Consensus       863 ~~V~~l~~spdg~~l~s~s~dg  884 (1068)
                      ++...++|+|...+||.++.|.
T Consensus       273 ~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  273 GPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             CCceeEEecCCCceeeEEecCC
Confidence            9999999999999999988763

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=9.6e-27  Score=237.83  Aligned_cols=313  Identities=16%  Similarity=0.188  Sum_probs=225.3

Q ss_pred             eccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEE
Q 001490          635 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS  714 (1068)
Q Consensus       635 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~  714 (1068)
                      .+++|...|.++++.                      |.|..+++|+.|.+|++||+......... +..-.......|+
T Consensus       162 ~l~hgtk~Vsal~~D----------------------p~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~h~i~  218 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVD----------------------PSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCETHQIN  218 (641)
T ss_pred             eccCCceEEEEeeec----------------------CCCceeeeccccceEEEEecccccccchh-hhccCcccccccc
Confidence            455666677777775                      67889999999999999998754433221 2222222556788


Q ss_pred             EEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001490          715 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  794 (1068)
Q Consensus       715 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~  794 (1068)
                      ++.|++.|..|++.+.....+|+|                                                 .||..+.
T Consensus       219 sl~ys~Tg~~iLvvsg~aqakl~D-------------------------------------------------RdG~~~~  249 (641)
T KOG0772|consen  219 SLQYSVTGDQILVVSGSAQAKLLD-------------------------------------------------RDGFEIV  249 (641)
T ss_pred             eeeecCCCCeEEEEecCcceeEEc-------------------------------------------------cCCceee
Confidence            899999988888888876666654                                                 2333333


Q ss_pred             EEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce-eeeeec-----ccccCeEEE
Q 001490          795 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLE-----GHSKRVTGL  868 (1068)
Q Consensus       795 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~~~-----~h~~~V~~l  868 (1068)
                      -...|--+|-|+.      .-++|...++|.+|.|++...+++++.||+++|||+...+ .+..++     +..-+++.+
T Consensus       250 e~~KGDQYI~Dm~------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC  323 (641)
T KOG0772|consen  250 EFSKGDQYIRDMY------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC  323 (641)
T ss_pred             eeeccchhhhhhh------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence            2222333333332      3457889999999999888899999999999999998643 223332     344578999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeee
Q 001490          869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK  947 (1068)
Q Consensus       869 ~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~  947 (1068)
                      +|++||+++|.|+.||.|.+|+..+........+  ...|.. ...|++++||+||++|++ +.|++++|||++..+...
T Consensus       324 ~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL  400 (641)
T KOG0772|consen  324 AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL  400 (641)
T ss_pred             ecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCC-CCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence            9999999999999999999999865432222222  222221 136999999999999999 999999999998765432


Q ss_pred             eeccC--CCcCEEEEEEecCCCEEEEEEC------CCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490          948 QWFPI--SSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus       948 ~~~~~--h~~~v~~l~fs~dg~~l~t~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
                      ....+  ...+-+.++||||.++|+||+.      .|.+.+||..+.+.+..+...          ...+..+.||| .-
T Consensus       401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----------~aSvv~~~Whp-kL  469 (641)
T KOG0772|consen  401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----------TASVVRCLWHP-KL  469 (641)
T ss_pred             hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----------CceEEEEeecc-hh
Confidence            21222  2456688999999999999874      478999999999999887722          24466789999 57


Q ss_pred             CEEEEEeCCCcEEEE-eCCCC
Q 001490         1020 TQFAVGLTNGEVYVI-EPNEP 1039 (1068)
Q Consensus      1020 ~~l~~~~~dg~i~~w-~~~~~ 1039 (1068)
                      +.+.+|+.||.++++ |-+.+
T Consensus       470 NQi~~gsgdG~~~vyYdp~~S  490 (641)
T KOG0772|consen  470 NQIFAGSGDGTAHVYYDPNES  490 (641)
T ss_pred             hheeeecCCCceEEEECcccc
Confidence            889999999999875 44433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=3.6e-26  Score=231.43  Aligned_cols=301  Identities=15%  Similarity=0.198  Sum_probs=238.8

Q ss_pred             eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeec----cccccceeeeeecCCCcceEEE
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI----GACSMLFKTALVRDPGVSVNRV  378 (1068)
Q Consensus       303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~h~~~V~~~  378 (1068)
                      .+.+..|.-.|.||+++||++ ...+++.+++|.=|++.+|+....    +|..    +....+++... .+|...|.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence            456678888999999999998 569999999999999999986632    1111    11222333322 4899999999


Q ss_pred             EECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490          379 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       379 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      +.|+||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|+.|++|+++.-..+.++.
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence            999999999999999999999999998776   6889999999999987666  68999999999999999998999999


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      +|...|.+|....  -++.+-+|+.|+++++|++ ....+..+.++.+.+.|++|-.+ ..+++|+.    +|.|.+|++
T Consensus       284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~  355 (479)
T KOG0299|consen  284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSL  355 (479)
T ss_pred             CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeee
Confidence            9999999997654  3345666669999999999 45566777888889999999655 46677775    667999999


Q ss_pred             CCCeeeeEEeccc-cc--------cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCCCCCCceEE
Q 001490          539 SEGAIKRTYQGLQ-LQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC  605 (1068)
Q Consensus       539 ~~~~~~~~~~~~~-~~--------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~  605 (1068)
                      .+.+++.+....+ ..        ...|++++..|..+.+++|+.+|.|++|-+..+    +++..++..   ..|++++
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~  432 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA  432 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence            9988877654322 11        127899999999999999999999999999887    445555543   4489999


Q ss_pred             EecCCCEEEEE-ECCCeEEEE
Q 001490          606 FNKNGTLLAVI-ANENRIKIL  625 (1068)
Q Consensus       606 ~s~~~~~l~~~-~~dg~i~iw  625 (1068)
                      |+++|+.+++| +....+--|
T Consensus       433 f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  433 FSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EccCCCEEEEeccccccccee
Confidence            99999966665 333333333

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=251.51  Aligned_cols=276  Identities=15%  Similarity=0.206  Sum_probs=213.5

Q ss_pred             cccccEEEEEEecCCceEEEeecCccEEEEeccCCcc------C------------------CCc-cc---------eec
Q 001490          708 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EA---------TTK  753 (1068)
Q Consensus       708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~------~------------------~~~-~~---------~~~  753 (1068)
                      .|.+.|.++.||+||++|++++.||.|+||.+...+.      .                  ... ..         ...
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876211      0                  000 00         000


Q ss_pred             cCCcccCCCCCCceeeec-CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCC
Q 001490          754 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD  831 (1068)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d  831 (1068)
                      ....+....... +...+ ....||...|..+.||.++- |++++ |.+|++|++...+++..|. |.+.|||++|+|-|
T Consensus       345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~f-LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNF-LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD  421 (712)
T ss_pred             CccccCCCcccc-ccccchhhhhccchhheecccccCCe-eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence            000000100000 00000 01236999999999998874 55555 9999999999999999998 99999999999999


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccC
Q 001490          832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  911 (1068)
Q Consensus       832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  911 (1068)
                      .+++++|+-||.|+||++...+.+.-...+ .-|++++|+|||++.+.|+.+|.+++|+....+......+....+....
T Consensus       422 DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~  500 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ  500 (712)
T ss_pred             CCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence            999999999999999999987776655544 7799999999999999999999999999998777666666655555444


Q ss_pred             CCCceEEEEeeCCC--EEEEEeCCeEEEEECCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001490          912 APSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE  987 (1068)
Q Consensus       912 ~~~v~~~~~spdg~--~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~  987 (1068)
                      ...|+.+.|.|...  .|+++.|..|+|||..+...+..+...+ ...-....|+.||++|++++.|..|++|++....
T Consensus       501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            45799999997654  7888999999999998888877755444 2334567899999999999999999999985544

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.7e-26  Score=235.94  Aligned_cols=309  Identities=18%  Similarity=0.233  Sum_probs=240.5

Q ss_pred             CCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcce
Q 001490          296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  375 (1068)
Q Consensus       296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V  375 (1068)
                      ...|..+-..|.+|+..|.++++.|.|-+ +++|+.|-+|++||+..-..... .|+            . +.......|
T Consensus       153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~fr------------~-l~P~E~h~i  217 (641)
T KOG0772|consen  153 KLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SFR------------Q-LQPCETHQI  217 (641)
T ss_pred             hcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hhh------------c-cCccccccc
Confidence            45678888899999999999999999986 59999999999999975332211 111            1 122345689


Q ss_pred             EEEEECCCCCEEEEEeCCcEEEEEEccCCCc---------ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~---------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      .+++||+.|..|++.+.....+|+|-..-+.         ++....-+||...++|.+|+|+.+. .++|++.||+++||
T Consensus       218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIW  296 (641)
T ss_pred             ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEE
Confidence            9999999999999999999999999875433         2223345699999999999999987 79999999999999


Q ss_pred             ECCCCce-eeEec-----cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce---EEecCCCC--cEEEEEEcc
Q 001490          447 DAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYSA  515 (1068)
Q Consensus       447 d~~~~~~-~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~--~i~~~~~s~  515 (1068)
                      |+...+. +..++     +..-++++++|++  ||..|++|+.||.|.+|+.......   ..-..|..  .|++++||+
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~  374 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY  374 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence            9876443 23332     2345678888865  8889999999999999997554332   23344544  899999999


Q ss_pred             CCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCCEEEEEE------CCCeEEEEEcCCCeE
Q 001490          516 NGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQL  588 (1068)
Q Consensus       516 d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~~  588 (1068)
                      ||++|++-+.    |..+++||++.. +++....+.. ....-+.++|+|+.+.|++|.      ..|++++||..+...
T Consensus       375 dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  375 DGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             ccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            9999998765    667999999864 4454544433 224567789999999999975      457899999999999


Q ss_pred             EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490          589 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  629 (1068)
Q Consensus       589 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  629 (1068)
                      +..+...  ...|..+.|+|.-+.|++++.||++++|--.+
T Consensus       450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            9998766  34588999999999999999999999975443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=220.47  Aligned_cols=298  Identities=16%  Similarity=0.246  Sum_probs=247.0

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ..+.+.|.||++.||.++...... ++.+++.|.+.+||.+++|.++..                   +.||.+.|.++.
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik  197 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK  197 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence            467788999999999999988766 889999999999999999999976                   889999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEc------cCC--------C----------------------cc-cceEEEccccccEEE
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAY------HGG--------S----------------------DA-RQQLEIDAHVGNVND  422 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~------~~~--------~----------------------~~-~~~~~~~~h~~~v~~  422 (1068)
                      |++.+.++++++.|++..||..      ...        +                      .+ .+...+.+|...|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            9999999999999999999972      110        0                      01 124467899999999


Q ss_pred             EEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec
Q 001490          423 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  502 (1068)
Q Consensus       423 l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  502 (1068)
                      +.|...|+  .+++++-|.+..+||+++|..+..+.||....+.++-+|  ..+++++.+.|.+.++||++.        
T Consensus       278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRe--------  345 (481)
T KOG0300|consen  278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFRE--------  345 (481)
T ss_pred             hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchh--------
Confidence            99999999  699999999999999999999999999999999998876  456888888888888887752        


Q ss_pred             CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEE
Q 001490          503 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  582 (1068)
Q Consensus       503 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd  582 (1068)
                          .|                                 ..+..|+||.   ..|+++.|..+ ..+++|++|.+|++||
T Consensus       346 ----aI---------------------------------~sV~VFQGHt---dtVTS~vF~~d-d~vVSgSDDrTvKvWd  384 (481)
T KOG0300|consen  346 ----AI---------------------------------QSVAVFQGHT---DTVTSVVFNTD-DRVVSGSDDRTVKVWD  384 (481)
T ss_pred             ----hc---------------------------------ceeeeecccc---cceeEEEEecC-CceeecCCCceEEEee
Confidence                01                                 1234578888   89999999876 4689999999999999


Q ss_pred             cCCC-eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee----eccccccceeeeEEcCCcccccc
Q 001490          583 MNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD----AAGVLSDNLRKLSVNPISTVTGA  657 (1068)
Q Consensus       583 ~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~  657 (1068)
                      +++. .++.++...   .+++.++.+..++.++.--++..|++||+...+...    .-++|...|.|++|....     
T Consensus       385 LrNMRsplATIRtd---S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh-----  456 (481)
T KOG0300|consen  385 LRNMRSPLATIRTD---SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH-----  456 (481)
T ss_pred             eccccCcceeeecC---CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC-----
Confidence            9875 466777654   347899999999999999999999999999765433    346888899999986432     


Q ss_pred             ccccCeeeecCCCCCCcccceeecccccceeecccc
Q 001490          658 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  693 (1068)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  693 (1068)
                                    | -.-|++++.|..+.-|.+..
T Consensus       457 --------------p-~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  457 --------------P-ACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             --------------c-ccccccccccceeeeeEecc
Confidence                          1 24477888899999998764

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=4.7e-25  Score=247.17  Aligned_cols=237  Identities=10%  Similarity=0.095  Sum_probs=185.3

Q ss_pred             ecCCCcceEEEEECCC-CCEEEEEeCCcEEEEEEccCCCc-c----cceEEEccccccEEEEEEcCCCCcEEEEEEeCCC
Q 001490          368 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  441 (1068)
Q Consensus       368 l~~h~~~V~~~~~spd-g~~las~~~d~~i~vwd~~~~~~-~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~  441 (1068)
                      +.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. .    .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg  148 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS  148 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence            7899999999999997 89999999999999999986532 1    122357789999999999999874 567999999


Q ss_pred             cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE-----EEEccC
Q 001490          442 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN  516 (1068)
Q Consensus       442 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d  516 (1068)
                      +|+|||+.+++.+..+. |...|.+++|++  +|.+|++++.|+.|++||++++.....+..|.+.+..     ..|+++
T Consensus       149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            99999999999887776 667899999976  7789999999999999999999888888888765432     345689


Q ss_pred             CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490          517 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       517 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                      +.++++++.++..++.|++||+++ ++++..+..+. ..+.+......+++.++++|+.|+.|++|++..+. +..+...
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~  303 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY  303 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence            999999887655557899999985 55555543322 12333333344558888899999999999998764 3344333


Q ss_pred             CCCCCCceEEEecCC
Q 001490          596 GGLPENPRICFNKNG  610 (1068)
Q Consensus       596 ~~~~~v~~v~~s~~~  610 (1068)
                      ....++..++|.|..
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence            344567889999964

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.9e-26  Score=215.01  Aligned_cols=284  Identities=17%  Similarity=0.246  Sum_probs=226.8

Q ss_pred             eEEEEcC--CCCeEEEEEc-----CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CC
Q 001490          314 MSMDFHP--VQHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS  385 (1068)
Q Consensus       314 ~~v~~sp--dg~~lla~gs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~  385 (1068)
                      .++.|||  +++..+|++.     ..|++.|-++..++-+..  +.-+|               -++.+..++||++ ..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence            5788998  3442333332     247899999975554432  22222               3568999999996 56


Q ss_pred             EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001490          386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  465 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  465 (1068)
                      .+++++.||++++||+...  -.++..++.|...|.++.|++..++ .+++++-|++|++|+...++.++++.+|...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            7788899999999995433  3455578899999999999998776 677779999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC-CCEEEEEeeCCCCceeEEEEeCCCC-ee
Q 001490          466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEG-AI  543 (1068)
Q Consensus       466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~~~~-~~  543 (1068)
                      ...|+|. ...+++++|.|+++++||++.......+..|...+.++.|+.- .+.+++++.    ++.|+.||+++- .+
T Consensus       152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP  226 (311)
T ss_pred             EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence            9999986 5569999999999999999998888889999999999999984 455666654    778999999864 55


Q ss_pred             eeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCe-EEEEEeCCCCCCCCceEEEec-CCCEEEEEECCC
Q 001490          544 KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANEN  620 (1068)
Q Consensus       544 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg  620 (1068)
                      +..+.+|.   -.|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...|  ..-+..+.||+ ++.++|+.+-|+
T Consensus       227 l~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe  301 (311)
T KOG0277|consen  227 LFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDE  301 (311)
T ss_pred             ceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeeccccc
Confidence            77778887   899999999975 466779999999999998543 44445544  34577888888 678999999999


Q ss_pred             eEEEEEC
Q 001490          621 RIKILET  627 (1068)
Q Consensus       621 ~i~iwd~  627 (1068)
                      .++||+-
T Consensus       302 ~l~Vw~p  308 (311)
T KOG0277|consen  302 LLYVWNP  308 (311)
T ss_pred             ceeeecc
Confidence            9999983

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.3e-25  Score=214.99  Aligned_cols=275  Identities=18%  Similarity=0.236  Sum_probs=219.9

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  388 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~la  388 (1068)
                      .+.|.+++|||....+++.||.||+||+|+++. |..+..                  ....|.++|.+++|+.||..++
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------a~~~~~~PvL~v~WsddgskVf   88 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------AQQSHDGPVLDVCWSDDGSKVF   88 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------hhhccCCCeEEEEEccCCceEE
Confidence            568999999996666888999999999999986 443321                  1446899999999999999999


Q ss_pred             EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001490          389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  468 (1068)
Q Consensus       389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~  468 (1068)
                      +|+.|+.+++||+.+++..    .+..|.++|.++.|-+...+..|+||+-|++|+.||.+...++.++. -.+.++++.
T Consensus        89 ~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D  163 (347)
T KOG0647|consen   89 SGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD  163 (347)
T ss_pred             eeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence            9999999999999998533    46689999999999887766689999999999999999999988886 556777775


Q ss_pred             eeecCCccEEEEEEcCCcEEEEeCCCCCceEEec--CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC--eee
Q 001490          469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIK  544 (1068)
Q Consensus       469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~  544 (1068)
                      .    --.+++.+..+..|.+|++++........  .-.-.+++++..+|....+.|+-    +|.+.+..+..+  +.-
T Consensus       164 v----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  164 V----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             c----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCc
Confidence            4    22488999999999999997655443221  12236889999998888888876    556777766665  445


Q ss_pred             eEEeccccc------cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          545 RTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       545 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      .+|+.|...      ...|++++|+|....|++++.||++.+||-.....+...+.+  ..+|.+.+|+.+|.++|.+.
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence            566666631      245788999999999999999999999998877777666544  35699999999999888654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=6.9e-26  Score=223.53  Aligned_cols=281  Identities=16%  Similarity=0.204  Sum_probs=233.2

Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCC-cEEEEEEeCCCcEEEEEC
Q 001490          370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA  448 (1068)
Q Consensus       370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd~  448 (1068)
                      -|.+.|.++...  ++.+++|+.||++++||..... .   ..+.||.++|.+++|.-.+. .-.+++++.|.++++|-+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-I---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCce-E---EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            478889998888  8899999999999999998742 2   36789999999888843322 115999999999999998


Q ss_pred             CCCcee----eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC-------------------------CCCceE
Q 001490          449 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV  499 (1068)
Q Consensus       449 ~~~~~~----~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~-------------------------~~~~~~  499 (1068)
                      +.+...    ..-.||...|.++...+  +|..+++|+.|.+|++|+..                         +..++.
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            877543    33459999999998754  77899999999999999831                         122445


Q ss_pred             EecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEE
Q 001490          500 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  579 (1068)
Q Consensus       500 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~  579 (1068)
                      .+.+|..+|.++.|++ ...+++++.    |.+|+.||+.++..+..+.+.    ..+.++..+|..+.|++|+.|..|+
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence            6788888999999988 667778876    778999999999998888774    4899999999999999999999999


Q ss_pred             EEEcCCCe---EEEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEECCCCc-eeeeccccccceeeeEEcCCccc
Q 001490          580 IWDMNKVQ---LLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV  654 (1068)
Q Consensus       580 iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  654 (1068)
                      +||.+++.   ..+.+.+|  ...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.++     
T Consensus       326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-----  398 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-----  398 (423)
T ss_pred             ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence            99998763   23445544  55799999999 55678899999999999999887 899999999999999886     


Q ss_pred             cccccccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490          655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  692 (1068)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~  692 (1068)
                                        ++..+++|+.|.+++++...
T Consensus       399 ------------------~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 ------------------EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ------------------CCceEEeccCcceEEEeccc
Confidence                              57789999999999998743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.9e-25  Score=214.78  Aligned_cols=311  Identities=13%  Similarity=0.164  Sum_probs=233.4

Q ss_pred             eeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCC--cccceeecCCcccc
Q 001490          633 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKA  710 (1068)
Q Consensus       633 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~  710 (1068)
                      +..+++|...|++++|+                      .||+++++++.|++|++|++..-..  .++.....    ..
T Consensus        79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~  132 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EY  132 (420)
T ss_pred             hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cC
Confidence            34678999999999996                      7899999999999999999764222  22222222    23


Q ss_pred             ccEEEEEEecCCceEEEee-cCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001490          711 NKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  789 (1068)
Q Consensus       711 ~~i~~l~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  789 (1068)
                      +..+.+.|+||-+.++... ....+++|.+...+.   |....  ...-||-.      .  + ...|.-.+..+-...+
T Consensus       133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~------~--f-~~kh~v~~i~iGiA~~  198 (420)
T KOG2096|consen  133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNL------E--F-ERKHQVDIINIGIAGN  198 (420)
T ss_pred             CCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--cccccccc------c--c-chhcccceEEEeecCC
Confidence            4678899999987766554 456899998765432   11110  11112200      0  0 0126667778888889


Q ss_pred             CCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcC---Cc-----eeeeeecc
Q 001490          790 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---SS-----EVISKLEG  860 (1068)
Q Consensus       790 g~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~---~~-----~~~~~~~~  860 (1068)
                      +++|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++.--.|++|.+-   .|     ..+..++|
T Consensus       199 ~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG  276 (420)
T KOG2096|consen  199 AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG  276 (420)
T ss_pred             ceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence            99999998 6789999999 999998887777788899999 99999999988899999873   23     24567899


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--eeeeecCCCcc-cCCCCceEEEEeeCCCEEEEEeCCeEEE
Q 001490          861 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLVHETHLAI  937 (1068)
Q Consensus       861 h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~-~~~~~v~~~~~spdg~~la~~~d~~i~v  937 (1068)
                      |...|..++||++.+.++|.|.||+++|||++-.....  ...++...... ...+.-..++.||.|+.||++....+++
T Consensus       277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~  356 (420)
T KOG2096|consen  277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKV  356 (420)
T ss_pred             chhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEE
Confidence            99999999999999999999999999999987432211  12222221111 1112344899999999999999999999


Q ss_pred             EECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCC
Q 001490          938 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL  986 (1068)
Q Consensus       938 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~  986 (1068)
                      |..++|+....+...|...|++++|++||++++|++ |..++|..-..|
T Consensus       357 ~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  357 FASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             EEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence            999999988887888999999999999999999986 788888764333

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=231.05  Aligned_cols=285  Identities=17%  Similarity=0.240  Sum_probs=240.8

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++  .+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            56799999999999999999999999999999998876 223336778889999999999999  788899999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      +...+...++.||.+.|+++.|.-..  ..+++|+.|.+|+.||+....+...+.. ...+..|+.+  ...++++..  
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~--  320 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF--  320 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc--
Confidence            99999999999999999999986543  2499999999999999988666554432 2344555554  455666665  


Q ss_pred             CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCC--CCCCceEE
Q 001490          528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC  605 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~  605 (1068)
                        |..|+.||.++.........+    +.|+++..++++..+++.+.|.++.+.|+++......+...+.  ....+.+.
T Consensus       321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence              556999999999998888775    4899999999999999999999999999999998888865432  23478899


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCCceeeeccccccc--eeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490          606 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  683 (1068)
Q Consensus       606 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  683 (1068)
                      |||++.++++|+.||.|+||++.+++....+......  |++++|+                      |.|..+++++.+
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~  452 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ  452 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence            9999999999999999999999999988887766555  8989886                      568889999999


Q ss_pred             ccceeec
Q 001490          684 NKSEVEK  690 (1068)
Q Consensus       684 ~~i~~wd  690 (1068)
                      +.+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            9999983

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.7e-24  Score=196.46  Aligned_cols=300  Identities=15%  Similarity=0.222  Sum_probs=234.0

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEcc------CCCcc--cc----eEEEccccccEEEEEEcCCCCcEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------GGSDA--RQ----QLEIDAHVGNVNDLAFSAPCKQISVI  435 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~------~~~~~--~~----~~~~~~h~~~v~~l~~s~d~~~~~l~  435 (1068)
                      .-.....|.+++|+|.|.+.|+|+..++.+|--..      .+...  .+    ...-+.|.+.|.|.+|||+|+  +++
T Consensus        28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--lia  105 (350)
T KOG0641|consen   28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIA  105 (350)
T ss_pred             EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEE
Confidence            44567899999999999999999999998876432      22110  00    112346889999999999999  999


Q ss_pred             EEeCCCcEEEEECCCCce--e---eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE
Q 001490          436 TCGDDKTIKVWDAVTGSR--T---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  510 (1068)
Q Consensus       436 s~~~d~~i~iwd~~~~~~--~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~  510 (1068)
                      +|+.|++|++.......+  .   ..+.-|.+.|..++|...+.                                    
T Consensus       106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~------------------------------------  149 (350)
T KOG0641|consen  106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE------------------------------------  149 (350)
T ss_pred             ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCC------------------------------------
Confidence            999999999875543222  1   23444666666666543221                                    


Q ss_pred             EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 001490          511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  590 (1068)
Q Consensus       511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~  590 (1068)
                          ..+..|++++.   |+..|++-|..+|+....+.+|.   +.|.++ ++=++-++++|+.|.+|++||++-...+.
T Consensus       150 ----s~~~il~s~ga---gdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~  218 (350)
T KOG0641|consen  150 ----SGGAILASAGA---GDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN  218 (350)
T ss_pred             ----cCceEEEecCC---CcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceee
Confidence                23456666553   68889999999999999999998   777765 44467889999999999999999988888


Q ss_pred             EEeCCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeee
Q 001490          591 TIDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  665 (1068)
Q Consensus       591 ~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  665 (1068)
                      ++....+     ...|.+++..|.|++|++|-.|....+||++.++.++.+..|...|.++.|+                
T Consensus       219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs----------------  282 (350)
T KOG0641|consen  219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS----------------  282 (350)
T ss_pred             eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC----------------
Confidence            7753221     2458899999999999999999999999999999999999999999999996                


Q ss_pred             ecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEecc
Q 001490          666 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  740 (1068)
Q Consensus       666 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~  740 (1068)
                            |...++++++.|..|++-|+...-..+........  |...+-.+.|.|..-.+++.+.|.++.+|.++
T Consensus       283 ------p~a~yllt~syd~~ikltdlqgdla~el~~~vv~e--hkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  283 ------PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE--HKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ------CCceEEEEecccceEEEeecccchhhcCceEEEEe--ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                  66789999999999999998754444433333333  78888889999999999999999999999753

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=9.1e-25  Score=244.65  Aligned_cols=270  Identities=17%  Similarity=0.198  Sum_probs=210.6

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcc----------cceEEEccccccEEEEEEcC-CCCcEEEEEEeC
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD  439 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~  439 (1068)
                      |-..|.....++|+..+++++.+..+..|+...+..+          .....+.+|.+.|.+++|+| +++  +|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence            3446666777788777777777777777776554321          11224679999999999999 777  8999999


Q ss_pred             CCcEEEEECCCC-------ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490          440 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  512 (1068)
Q Consensus       440 d~~i~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  512 (1068)
                      |++|++||+.++       ..+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.+......+..|...|.+++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            999999999765       3567889999999999998753 35899999999999999999888888888999999999


Q ss_pred             EccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE----CCCeEEEEEcCCCe-
Q 001490          513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ-  587 (1068)
Q Consensus       513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~-  587 (1068)
                      |+|+|.+|++++.    ++.|++||+++++.+..+.+|.  ......+.|.+++..+++++    .|+.|++||+++.. 
T Consensus       176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999999999886    6679999999999998888876  22345678899888888754    47999999998754 


Q ss_pred             EEEEEeCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEECCCCceeeeccc-cccceeeeEEcC
Q 001490          588 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP  650 (1068)
Q Consensus       588 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~  650 (1068)
                      ++.....+. ...+....|++++.++++++ .|+.|++||+.++..+..... ....+.++++.|
T Consensus       250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence            343333322 23355667899999999887 499999999998876655433 233455555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.1e-25  Score=210.49  Aligned_cols=243  Identities=19%  Similarity=0.271  Sum_probs=204.2

Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCC--EEEEEECCCeEEEEEc
Q 001490          773 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNA  849 (1068)
Q Consensus       773 ~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~  849 (1068)
                      ....|...++++|+  ++.|+|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-.  .|.+|+.||.|.+|+.
T Consensus        38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~  114 (362)
T KOG0294|consen   38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRV  114 (362)
T ss_pred             cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEc
Confidence            33469999999998  689999998 89999999999999999999999999999998 554  8999999999999999


Q ss_pred             CCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490          850 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  929 (1068)
Q Consensus       850 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  929 (1068)
                      .+.+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+......+..         ..+.+.|+|.|.++++
T Consensus       115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVV  185 (362)
T ss_pred             CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEE
Confidence            9999999999999999999999999999999999999999999877444222222         2345999999999999


Q ss_pred             EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccc
Q 001490          930 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1009 (1068)
Q Consensus       930 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1068)
                      +..+.|-+|.+++-........  +.++.++.|. ++.+|++|+.|+.|.+||.+++.+.+.+.        .|...+..
T Consensus       186 ~~~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~  254 (362)
T KOG0294|consen  186 SGRNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKD  254 (362)
T ss_pred             EeccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheee
Confidence            9999999999988776654332  3556666665 55688999999999999999988887777        23445555


Q ss_pred             eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490         1010 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus      1010 ~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
                      +..--.| ++.+|++++.||.|++||+...
T Consensus       255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecC-CceEEEEeccCceEEEEEcccc
Confidence            5544566 6789999999999999999755

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1e-26  Score=227.61  Aligned_cols=293  Identities=11%  Similarity=0.163  Sum_probs=235.1

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ++-+..|.||.+.|.|++=+|..-..+|+|+.||.|+|||+.+.++...                   +..|.+.|..++
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC  116 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence            4456678999999999999998845789999999999999999888765                   678999999999


Q ss_pred             ECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  459 (1068)
Q Consensus       380 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  459 (1068)
                      +..  ..+++++.|++|+.|.++.. ..+   ++.+ ...+..+.-+..+.  .++|||.+  |.|||.....++..+.-
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw  185 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW  185 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence            987  67788889999999998873 222   3333 23456666655566  68888764  99999999999999988


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  539 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~  539 (1068)
                      -...|.++.|+|.+. ..|+++..|+.|.+||++....+...... ...+.++|+|.+-.++++..    |..++.+|++
T Consensus       186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR  259 (433)
T KOG0268|consen  186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR  259 (433)
T ss_pred             CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence            889999999988744 58888899999999999988876644322 24467899996666666653    7789999987


Q ss_pred             C-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490          540 E-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       540 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      . ..++..+.+|.   ..|..+.|+|.|+-+++||.|.+|+||..+.+......-. .....|.++.||.|.+++++|++
T Consensus       260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence            5 34566666766   8999999999999999999999999999988765433321 12345899999999999999999


Q ss_pred             CCeEEEEECCCCce
Q 001490          619 ENRIKILETPESNS  632 (1068)
Q Consensus       619 dg~i~iwd~~~~~~  632 (1068)
                      |+.|++|.....+.
T Consensus       336 d~nvRlWka~Asek  349 (433)
T KOG0268|consen  336 DGNVRLWKAKASEK  349 (433)
T ss_pred             Ccceeeeecchhhh
Confidence            99999999775433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.6e-26  Score=239.08  Aligned_cols=242  Identities=21%  Similarity=0.259  Sum_probs=206.8

Q ss_pred             EEEEC-CCCCEEEEEeCCcEEEEEEccCCCcc---cceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-
Q 001490          377 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-  451 (1068)
Q Consensus       377 ~~~~s-pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-  451 (1068)
                      .+..+ |.++||.+|+.||.|++|++......   .....+..|.+.|+.++...+++  .|++++.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            34444 46788999999999999998754431   12336778999999999999999  7999999999999999887 


Q ss_pred             -ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc--eE--------Eec-CCCCcEEEEEEccCCCE
Q 001490          452 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR  519 (1068)
Q Consensus       452 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~  519 (1068)
                       -+..++..|...|.++++.. .+...+++|+-|+.|.+||+.++..  ..        .+. ++...|++++.++.|..
T Consensus       107 ~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             chhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence             67788899999999999842 3557999999999999999997633  11        122 45568999999999988


Q ss_pred             EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCC
Q 001490          520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  599 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  599 (1068)
                      +++|+.    ++.+++||.++++.+..++||.   ..|..+..++||.+++++|.||+|++||+...+++.++..|..  
T Consensus       186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--  256 (735)
T KOG0308|consen  186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--  256 (735)
T ss_pred             EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence            888876    4459999999999999999999   9999999999999999999999999999999999999987754  


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          600 ENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      .|+++..+|+-..+++|+.||.|..=|+.+.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            4999999999999999999999999888764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.2e-23  Score=227.54  Aligned_cols=567  Identities=12%  Similarity=0.116  Sum_probs=352.3

Q ss_pred             cCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCc-EEEEEEeCCCcEEEEE
Q 001490          369 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWD  447 (1068)
Q Consensus       369 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~-~~l~s~~~d~~i~iwd  447 (1068)
                      .|-...-..-.||+|++++..+. +..|.||.+.+|+++.   .+.+|..++..+.+.|.... .++.+++.||.|++||
T Consensus        13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            33333334456999999998775 5569999999999887   78899999999999887663 4788999999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeec-CCccEEEEEE-cC------------CcEEEEeCCCCCce-EEecCCCCcEEEEE
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAK-ENIHFIFSIS-VD------------GKIKAWLYDSLGAR-VDYDAPGLGCTRMA  512 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~-~~~~~l~s~s-~d------------g~i~vwd~~~~~~~-~~~~~~~~~i~~~~  512 (1068)
                      ...+..++++..+. ++..+.+.+. -+....+..+ .|            ++++-+.+.+.... ..+......-.++.
T Consensus        89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~  167 (792)
T KOG1963|consen   89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV  167 (792)
T ss_pred             CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence            99999998886433 2333222110 0000111111 11            11111111111100 00111111135678


Q ss_pred             EccCCCEEEEEeeCCCCceeEEEEeCCCCeee-eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC--CeEE
Q 001490          513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL  589 (1068)
Q Consensus       513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~  589 (1068)
                      +++.|.+...+.     +..+.+|+..++... .....+..|...+++.+++|+++++++|..||.|.+|.--.  +...
T Consensus       168 ~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  168 DNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             EcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence            888888877766     345889988875511 11111122235589999999999999999999999996433  3322


Q ss_pred             EEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCC
Q 001490          590 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  669 (1068)
Q Consensus       590 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1068)
                      ..-..|-|...|.+++|+++|.+|++|+..+.+.+|.+.+++. +-+..                               
T Consensus       243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPR-------------------------------  290 (792)
T KOG1963|consen  243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPR-------------------------------  290 (792)
T ss_pred             cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccc-------------------------------
Confidence            2222334456799999999999999999999999999998741 11110                               


Q ss_pred             CCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCcc
Q 001490          670 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  749 (1068)
Q Consensus       670 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  749 (1068)
                                                             -...|..+.+|||+...+....|+.|.+-....-....   
T Consensus       291 ---------------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~---  328 (792)
T KOG1963|consen  291 ---------------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS---  328 (792)
T ss_pred             ---------------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh---
Confidence                                                   23567888899999988888888888887654322100   


Q ss_pred             ceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEccCceeEEEec-----CCC----
Q 001490          750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS----  819 (1068)
Q Consensus       750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~dg~i~iwd~~~~~~~~~~~-----~~~----  819 (1068)
                           .+.-..+.+..      . ......-.+.++++|- +..+.-+-.|.|++||+.+.+.+..+.     .+.    
T Consensus       329 -----tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n  396 (792)
T KOG1963|consen  329 -----TISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN  396 (792)
T ss_pred             -----hccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence                 01111111000      0 0113455677888884 444444447999999998877665543     122    


Q ss_pred             --CCeEEEEEeCCCCCEEEEEE--------CCC--eEEEEEcCCcee----e-eeecccccCeEEEEEcC-CC-CEEEEE
Q 001490          820 --PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----I-SKLEGHSKRVTGLVFSD-AL-NILVSS  880 (1068)
Q Consensus       820 --~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~-~~~~~h~~~V~~l~~sp-dg-~~l~s~  880 (1068)
                        -.+++++.+- .|.+++|+-        .||  .+++|-......    . .....|...+...+|.+ .. .+++++
T Consensus       397 ~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta  475 (792)
T KOG1963|consen  397 IQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA  475 (792)
T ss_pred             eEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe
Confidence              2578888888 699999863        333  677887654332    2 22245877777666654 23 389999


Q ss_pred             eCCCcEEEEECCCCcee-----eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCc
Q 001490          881 GGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV  955 (1068)
Q Consensus       881 s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~  955 (1068)
                      +.||.++||-+...+..     ...+.....-|.   .+++.++||.||..|+++.++.|.+||..+...+.........
T Consensus       476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~  552 (792)
T KOG1963|consen  476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNW  552 (792)
T ss_pred             ccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccccc
Confidence            99999999998543221     122222222233   3789999999999999999999999999984333222333344


Q ss_pred             CEEEEEEec----CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCC--------C-CccCcccceEEEECCCCCCEE
Q 001490          956 PISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP--------T-TSCLHVYPHAIAAHPLKPTQF 1022 (1068)
Q Consensus       956 ~v~~l~fs~----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~p~~~~~l 1022 (1068)
                      ++..+.|..    ++.  +.....+.+.+|++-+..+...+........        . ...+...-.-+++.|   ..+
T Consensus       553 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~~  627 (792)
T KOG1963|consen  553 PIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---ELL  627 (792)
T ss_pred             chHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cch
Confidence            555555543    333  2233567899999999988874332222111        0 001111112244555   233


Q ss_pred             E--------EEeCCCcEEEEeCCCCC
Q 001490         1023 A--------VGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus      1023 ~--------~~~~dg~i~~w~~~~~~ 1040 (1068)
                      .        ..+.|+.|.+|+....+
T Consensus       628 ~~~k~~~~~f~~~~~ril~F~~~~pk  653 (792)
T KOG1963|consen  628 LVVKSIEQIFRGRDSRILIFSGDSPK  653 (792)
T ss_pred             hhhhhhhhhcccccceEEEecCCCch
Confidence            3        77788888888875444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=5e-25  Score=233.94  Aligned_cols=285  Identities=18%  Similarity=0.293  Sum_probs=241.1

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE-E
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-V  378 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-~  378 (1068)
                      ..+.+.|.||...|..+++.+..  .+++++.||++++|+-..++-+....                 +.+|.+-|.+ +
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~~-----------------~~~~~g~i~~~i   64 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETHA-----------------FEGPKGFIANSI   64 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCccccccee-----------------cccCcceeeccc
Confidence            45778999999999999998876  46899999999999987776664322                 5567777777 7


Q ss_pred             EECC-CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490          379 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       379 ~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  457 (1068)
                      ++-+ ++-+|++|+.|++|.+|.......+.   .+.+|...|.+++...++.   +++|+-|.++++|-  .+++...+
T Consensus        65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l  136 (745)
T KOG0301|consen   65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL  136 (745)
T ss_pred             eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence            7775 55679999999999999999987666   7889999999999887775   89999999999996  46677789


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd  537 (1068)
                      .+|...|++++..+..   .+++||.|.+|++|.  .++...++.+|..-|+.+++-+++.+ ++|+.    |+.|++|+
T Consensus       137 ~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~  206 (745)
T KOG0301|consen  137 QGHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWD  206 (745)
T ss_pred             CCcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEe
Confidence            9999999999887643   899999999999994  57788899999999999999887665 45554    77899999


Q ss_pred             CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      + +|+.+..+.+|.   .-++++....++..++++++|++++||+..  .+.+.+..+..  .|+++.+-++|. +++|+
T Consensus       207 ~-~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~  277 (745)
T KOG0301|consen  207 L-DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGG  277 (745)
T ss_pred             c-cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEec
Confidence            8 889999999999   899999988888899999999999999976  77777776543  488888888885 77889


Q ss_pred             CCCeEEEEECCCC
Q 001490          618 NENRIKILETPES  630 (1068)
Q Consensus       618 ~dg~i~iwd~~~~  630 (1068)
                      +||.|+||.....
T Consensus       278 SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  278 SDGRVRVFTVDKD  290 (745)
T ss_pred             cCceEEEEEeccc
Confidence            9999999998744

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.3e-25  Score=223.05  Aligned_cols=250  Identities=21%  Similarity=0.287  Sum_probs=214.0

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceE-------------EE--ccccccEEEEEEcCCCCcE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL-------------EI--DAHVGNVNDLAFSAPCKQI  432 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~-------------~~--~~h~~~v~~l~~s~d~~~~  432 (1068)
                      +..|.-+|.+|+++||+++..+++.+++|.=|++.+|+..+...             ..  .+|...+.+++.|+||+  
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence            55699999999999999999999999999999999887431100             01  37888999999999999  


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  512 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  512 (1068)
                      +|++|+.|..|.|||.++.+.++.+++|.+.|.+++|...  ...|++++.|+.|++|+++......++.+|...|..+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            8999999999999999999999999999999999999754  35899999999999999999999999999999999999


Q ss_pred             EccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490          513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  592 (1068)
Q Consensus       513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  592 (1068)
                      ...-++.+-+++.    |.++++|++.. +....|.++.   +.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus       294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            8888888777765    77899999943 4445677776   88999999755 57899999999999999999988776


Q ss_pred             eCCCCC----------CCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          593 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       593 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      ....+.          ..|++++..|...++++|+.+|.|++|-+.++
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            532211          15778999999999999999999999998876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=3.4e-25  Score=247.73  Aligned_cols=279  Identities=17%  Similarity=0.241  Sum_probs=242.0

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  450 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~  450 (1068)
                      +...+.+..|.  +.++++++.+++|++||..++..+..  .+.||.+.|.+++|..-+.  ++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence            56788888888  66889999999999999999876552  3889999999999987555  899999999999999999


Q ss_pred             CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          451 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       451 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      |.+.+++.+|...|.++..    ....+++|+.|.+|++|+++++..+..+.+|..+|.++..+  +.++++++.    +
T Consensus       281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d  350 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D  350 (537)
T ss_pred             CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence            9999999999999999976    33578889999999999999999999999999999999987  889999987    5


Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC-eEEEEEeCCCCCCCCceEEEecC
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN  609 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~  609 (1068)
                      +.|.+||+.++++++.+.+|.   ..|.++.+.+. +.+++|+.|++|++||+++. +++..+..|...  +..+  ...
T Consensus       351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~  422 (537)
T KOG0274|consen  351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR  422 (537)
T ss_pred             ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence            679999999999999999988   99999988765 89999999999999999999 899998877543  3333  345


Q ss_pred             CCEEEEEECCCeEEEEECCCCceeeeccc-cccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490          610 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  688 (1068)
Q Consensus       610 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  688 (1068)
                      +++|++++.|++|++||..++..+..+.+ +...+..++..                        ...+++++.|+++++
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL  478 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence            78999999999999999999999999998 56666655542                        356788999999999


Q ss_pred             ecccccCCc
Q 001490          689 EKPLFARPS  697 (1068)
Q Consensus       689 wd~~~~~~~  697 (1068)
                      ||+......
T Consensus       479 ~dl~~~~~~  487 (537)
T KOG0274|consen  479 WDLRSGTLI  487 (537)
T ss_pred             EecccCchh
Confidence            998755443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=7.4e-25  Score=209.88  Aligned_cols=274  Identities=16%  Similarity=0.167  Sum_probs=215.9

Q ss_pred             cCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          369 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       369 ~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      ...++.|.+++||| ...++++++.|++|++|+++....... .....|.++|.+++|+.||.  .+++|+.|+.+++||
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD  100 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence            34678999999999 455666889999999999987422222 24567999999999999998  799999999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      +.+++ +..+..|.++|..+.|.+..+-..|++||.|++|+.||.+....+..+...+ .+.++..  -..+++++..  
T Consensus       101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata--  174 (347)
T KOG0647|consen  101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA--  174 (347)
T ss_pred             ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence            99995 5567789999999999887777799999999999999999888887776655 3333332  2334555554  


Q ss_pred             CCceeEEEEeCCCCeee-eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC--eEEEEEeCCCC-------
Q 001490          528 EGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG-------  597 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~-------  597 (1068)
                        +..|.+|+++++... +.....-  +..+++++...+....+.|+-+|.+.|-.+..+  +.-..++.|..       
T Consensus       175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~  250 (347)
T KOG0647|consen  175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD  250 (347)
T ss_pred             --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence              556999999765432 2222221  356899999999888899999999999999886  33344444442       


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccc
Q 001490          598 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  655 (1068)
Q Consensus       598 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  655 (1068)
                      ...|++++|+|....|++++.||++.+||-.....+...+.+..+|++..|+.++...
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if  308 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF  308 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence            3357889999999999999999999999999888888889999999999998665544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=235.88  Aligned_cols=352  Identities=18%  Similarity=0.220  Sum_probs=262.7

Q ss_pred             CCCCce---EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490          309 GSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  385 (1068)
Q Consensus       309 h~~~V~---~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~  385 (1068)
                      |...|.   .+..++.+.++|.+|+.||.|++|++..-.......             -...+..|.+.|..++...+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCC
Confidence            444555   566665555578999999999999986533221100             0112667999999999999999


Q ss_pred             EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEE-cCCCCcEEEEEEeCCCcEEEEECCCCc--eee-------
Q 001490          386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTY-------  455 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~-------  455 (1068)
                      .|++++.|-+|++|+...+. ......+..|.+.|.|++. -++..  ++|+||-|+.|.+||+.+|.  .+.       
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999998874 2223367789999999999 66666  89999999999999999883  222       


Q ss_pred             -Eec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490          456 -SFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       456 -~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i  533 (1068)
                       .+. |+..+|++++..+  +|..+++|+..+.+++||.++.+....+.+|...|..+-.++||+.+++++.    |++|
T Consensus       164 ~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtI  237 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTI  237 (735)
T ss_pred             ccCCCCCccceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceE
Confidence             233 7889999998855  6679999999999999999999999999999999999999999999999986    7789


Q ss_pred             EEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEE
Q 001490          534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  613 (1068)
Q Consensus       534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  613 (1068)
                      ++||+...+++.++..|.   ..|+++..+|+-..+++|+.||.|+.=|+++......+-.+.  .+|..+..+...+-+
T Consensus       238 rlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~~  312 (735)
T KOG0308|consen  238 RLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNSV  312 (735)
T ss_pred             EeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCCc
Confidence            999999999999999988   779999999999999999999999999998853333332221  246777777655555


Q ss_pred             EEEECCCeEEEEECCCCceeeecccc-------ccceeeeEEcCCccccccccccCeeee-cCCCCCCcccceeeccccc
Q 001490          614 AVIANENRIKILETPESNSVDAAGVL-------SDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKPEISVEAENK  685 (1068)
Q Consensus       614 ~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~  685 (1068)
                      -+++.|+.|+-|...-...+......       ...+.+....|+...-      |..++ ......|.+.+++-...|.
T Consensus       313 WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~------Gg~ai~k~~mL~dkRhVlTkDa~gn  386 (735)
T KOG0308|consen  313 WVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIP------GGAAIKKHAMLNDKRHVLTKDAKGN  386 (735)
T ss_pred             eeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceecc------CchhhhhhhhhcCcceEeeecCCCC
Confidence            78888999999987643222111110       0011111111111111      11111 1111467889999999999


Q ss_pred             ceeecccc
Q 001490          686 SEVEKPLF  693 (1068)
Q Consensus       686 i~~wd~~~  693 (1068)
                      +.+||+-.
T Consensus       387 v~lwDIl~  394 (735)
T KOG0308|consen  387 VALWDILA  394 (735)
T ss_pred             EEEEEeee
Confidence            99999653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2e-24  Score=216.72  Aligned_cols=285  Identities=16%  Similarity=0.185  Sum_probs=244.3

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      ...+.++...|... .+.||+.|..+.++|..+++.+..                   ++||...|..+.|+|+...+++
T Consensus       219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~  278 (506)
T KOG0289|consen  219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT  278 (506)
T ss_pred             CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence            34788888888744 679999999999999999998865                   8899999999999999999999


Q ss_pred             EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc--CCCcEEEE
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSL  467 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~~~v~~i  467 (1068)
                      ++.|..|+||.........   ....|..+|+.+..+|.|+  |+++++.|++..+.|+++|..+.....  ..-.+++.
T Consensus       279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~  353 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA  353 (506)
T ss_pred             cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence            9999999999998765433   5678999999999999999  899999999999999999998876643  23447888


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  547 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  547 (1068)
                      +|+|  ||.++.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|+++..    |+.|++||++.-+..+++
T Consensus       354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence            9987  7889999999999999999999999999999999999999999999999986    556999999988888888


Q ss_pred             eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          548 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       548 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      ....  ...+.++.|.+.|.+++.++.|=.|++++-.+.........+.+......+.|....+++++++.|..++++.+
T Consensus       428 ~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  428 QLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            7655  45799999999999999998888888887655544333333333345788999999999999999999888754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=218.10  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=242.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001490          373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  452 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  452 (1068)
                      ..+.++...|....+++|+.|.++.++|..+++.+.   .++||...|+.+.|+|+..  .+++++.|..|+||......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence            468888888888899999999999999999987666   7889999999999999998  89999999999999998888


Q ss_pred             eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC--CCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      .......|.++|+.+..++  +|.||++++.||+..+.|++++.........  .-.+++.+|+|||..+.++..    +
T Consensus       295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d  368 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D  368 (506)
T ss_pred             Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence            8888889999999999887  6679999999999999999999887766553  346899999999999999876    7


Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      +.+++||+.++..+..|.+|.   ++|..+.|+.+|.+++++++|+.|++||++..+...++...... ++.++.|.+.|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG  444 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG  444 (506)
T ss_pred             ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence            789999999999999999988   99999999999999999999999999999999988888876654 68999999999


Q ss_pred             CEEEEEECCCeEEEEECCCC--ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490          611 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  688 (1068)
Q Consensus       611 ~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  688 (1068)
                      .+|+.++.|=.|++++-.+.  ..+..+..|.+..+++.|.                      ...+++++++.|...++
T Consensus       445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL  502 (506)
T ss_pred             CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence            99999988777777764443  4455555666666666664                      55678888888887776


Q ss_pred             ec
Q 001490          689 EK  690 (1068)
Q Consensus       689 wd  690 (1068)
                      +.
T Consensus       503 ~a  504 (506)
T KOG0289|consen  503 YA  504 (506)
T ss_pred             ee
Confidence            54

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.4e-26  Score=222.11  Aligned_cols=284  Identities=14%  Similarity=0.224  Sum_probs=235.0

Q ss_pred             EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEe
Q 001490          412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  491 (1068)
Q Consensus       412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd  491 (1068)
                      .+.||.+.|.|++=+|..-. .+++|+.||.|+|||+.+..++.+++.|.+.|..+++..    ..+++++.|.+|+.|.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            46799999999999998732 799999999999999999999999999999999999865    4799999999999998


Q ss_pred             CCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE
Q 001490          492 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  571 (1068)
Q Consensus       492 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  571 (1068)
                      ++.. ...++. ....+..+.-+..+..+++|+.      .|.|||.....++..+.-..   ..|.++.|+|....|+.
T Consensus       136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA  204 (433)
T ss_pred             ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence            7663 222332 2234555666666778888875      49999999888888888666   78999999998776655


Q ss_pred             -EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-ceeeeccccccceeeeEEc
Q 001490          572 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN  649 (1068)
Q Consensus       572 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~  649 (1068)
                       ++.|+.|.+||++++.+++.+.....   -+.++|+|++-.++++..|..++.+|+... .++....+|...|..+.|+
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence             56999999999999999988876544   478999998888999999999999999865 5677788898888888886


Q ss_pred             CCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEee
Q 001490          650 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA  729 (1068)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  729 (1068)
                                            |.|+-+++|+.|.+||+|..............     .-..|.++.||-|.+++++|+
T Consensus       282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS  334 (433)
T ss_pred             ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence                                  67889999999999999998755444333222     334689999999999999999


Q ss_pred             cCccEEEEeccC
Q 001490          730 SNGVHLMWRWPR  741 (1068)
Q Consensus       730 ~dg~i~iw~~~~  741 (1068)
                      .|+.|++|.-..
T Consensus       335 dd~nvRlWka~A  346 (433)
T KOG0268|consen  335 DDGNVRLWKAKA  346 (433)
T ss_pred             CCcceeeeecch
Confidence            999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.5e-25  Score=234.26  Aligned_cols=275  Identities=20%  Similarity=0.246  Sum_probs=237.6

Q ss_pred             EEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490          376 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       376 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                      .-+.|| ....||+|. ...|++|+..++.... +  ...+...|+++.|+++|.  +|+.|..+|.|.|||..+.+.+.
T Consensus       181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hHhhcc-cCCeEEEEe-cceEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence            346788 455677774 4469999999987332 2  223378999999999999  89999999999999999999999


Q ss_pred             Eecc-CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-ecCCCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490          456 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       456 ~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i  533 (1068)
                      .+.+ |...|-+++|.    +..+.+|+.|+.|..+|++..+.... +..|...|..+.|++|++++++++.    |+.+
T Consensus       254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~  325 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV  325 (484)
T ss_pred             cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence            9998 99999999995    45899999999999999998887666 7889999999999999999999986    7789


Q ss_pred             EEEeCCCCeeeeEEeccccccCCeEEEEEecCC-CEEEE--EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490          534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      .|||.....++..+..|.   ..|.+++|+|-. ..|++  |+.|+.|++||..++..+..+...   ..|..+.|++..
T Consensus       326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~  399 (484)
T KOG0305|consen  326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY  399 (484)
T ss_pred             EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence            999998889999999998   999999999964 45566  458999999999999999988765   348999999988


Q ss_pred             CEEEE--EECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490          611 TLLAV--IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  688 (1068)
Q Consensus       611 ~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  688 (1068)
                      +-|++  |..++.|.||+..+.+.+..+.+|...|..++++                      |||..+++++.|.++++
T Consensus       400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf  457 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF  457 (484)
T ss_pred             CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence            76665  4457899999999999999999999999999996                      78999999999999999


Q ss_pred             ecccc
Q 001490          689 EKPLF  693 (1068)
Q Consensus       689 wd~~~  693 (1068)
                      |++-.
T Consensus       458 w~~f~  462 (484)
T KOG0305|consen  458 WNLFD  462 (484)
T ss_pred             ccccC
Confidence            99764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.7e-25  Score=204.05  Aligned_cols=284  Identities=15%  Similarity=0.207  Sum_probs=226.5

Q ss_pred             eEEEEECCC-CCEEEEE-------eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          375 VNRVVWSPD-GSLLGVA-------YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       375 V~~~~~spd-g~~las~-------~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      =.++.|||= ..+||++       ...|.+.|-++..++.+.....+ ...+.+..++|++.... .+++++.||++++|
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~-~~~~a~GDGSLrl~   88 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHEN-QVIAASGDGSLRLF   88 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcc-eEEEEecCceEEEe
Confidence            357889992 3344433       24688999999766655544444 34667999999998776 67788889999999


Q ss_pred             ECCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCEEEEEe
Q 001490          447 DAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG  524 (1068)
Q Consensus       447 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~  524 (1068)
                      |+.. ..+++.++.|...|.++.+... +++.++++|.|++|++|+......+.++.++...|....|+| .++.+++++
T Consensus        89 d~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   89 DLTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             ccCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence            9643 4578899999999999999876 456777779999999999999999999999999999999999 556777776


Q ss_pred             eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCC-eEEEEEeCCCCCCCCc
Q 001490          525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENP  602 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~  602 (1068)
                      .    ++.+++||++.......+..|.   ..+.++.|+.-. +.+++|+.|+.|++||++.- .++..+.+|  .-.|.
T Consensus       168 g----d~~l~lwdvr~~gk~~~i~ah~---~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh--~~AVR  238 (311)
T KOG0277|consen  168 G----DGTLRLWDVRSPGKFMSIEAHN---SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH--GLAVR  238 (311)
T ss_pred             C----CceEEEEEecCCCceeEEEecc---ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC--ceEEE
Confidence            4    7889999998755445577776   899999999754 56677999999999999874 456666544  45699


Q ss_pred             eEEEecC-CCEEEEEECCCeEEEEECCCC-ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490          603 RICFNKN-GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  680 (1068)
Q Consensus       603 ~v~~s~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  680 (1068)
                      .+.|||. ..+|++++.|-+++|||...+ ..+.+...|.+-+..+.+++                     -++.++++.
T Consensus       239 kvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~---------------------~~~~~vAs~  297 (311)
T KOG0277|consen  239 KVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL---------------------FDPGQVAST  297 (311)
T ss_pred             EEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc---------------------ccCceeeec
Confidence            9999994 568999999999999999844 55666677788787777773                     367789999


Q ss_pred             cccccceeecc
Q 001490          681 EAENKSEVEKP  691 (1068)
Q Consensus       681 ~~d~~i~~wd~  691 (1068)
                      +-|+.+.+|+.
T Consensus       298 gWDe~l~Vw~p  308 (311)
T KOG0277|consen  298 GWDELLYVWNP  308 (311)
T ss_pred             ccccceeeecc
Confidence            99999999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-24  Score=205.96  Aligned_cols=256  Identities=20%  Similarity=0.309  Sum_probs=187.4

Q ss_pred             eeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcc--cceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcE
Q 001490          366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  443 (1068)
Q Consensus       366 ~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i  443 (1068)
                      ..|.+|...|++++||.||++||+++.|++|+||++..-+..  +.. ...-.-+..+.++|+||-+. +++++-...++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCCEE
Confidence            348899999999999999999999999999999999763221  000 01111234688999999886 56666677789


Q ss_pred             EEEECCC---CceeeE--------e-ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEE
Q 001490          444 KVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  511 (1068)
Q Consensus       444 ~iwd~~~---~~~~~~--------~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~  511 (1068)
                      ++|.+..   |.....        | +.|.-.+..+-.  .+++.+|++++.|..|.+|++. ++.+..+......-...
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            9997643   222111        1 235566666655  4478899999999999999998 67777777777677788


Q ss_pred             EEccCCCEEEEEeeCCCCceeEEEEeCC---CC-----eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEc
Q 001490          512 AYSANGRRLFSCGTSKEGESFLVEWNES---EG-----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  583 (1068)
Q Consensus       512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  583 (1068)
                      +.||+|+++++++...+    |.+|.+-   .|     ..+..+.||.   ..|...+|+++..++++.+.||+++|||.
T Consensus       235 avSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             eeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            99999999999987555    8999763   22     2345677887   99999999999999999999999999997


Q ss_pred             CC-------CeEEEEE--eCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee
Q 001490          584 NK-------VQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  634 (1068)
Q Consensus       584 ~~-------~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1068)
                      +-       .+.+...  ..+........++++|+|..||++.. ..+.++..++++...
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYP  366 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccch
Confidence            52       1222222  11222223457999999998887665 578888887765443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1e-20  Score=208.02  Aligned_cols=279  Identities=16%  Similarity=0.218  Sum_probs=225.1

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCc-ceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  385 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~  385 (1068)
                      ..|+..-+.++|.|+|. ++.+++.||.|++|+..+-. ....                   +.-++..|.+++-.  +.
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN   67 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence            36888899999999999 67888899999999987652 2211                   22266677777654  55


Q ss_pred             EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001490          386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  465 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  465 (1068)
                      +|++|+.+++|.+|...+++.-.   .+...+-++.+++|+.+|+  +++.|+.|-.|++-++.+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            99999999999999999886433   3445677899999999999  899999999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC--------CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490          466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd  537 (1068)
                      ++.++|  ++.+|++.+-||.|++|+++++.....+..-        ...+..++|+|+|..+++...    ++.|.+|+
T Consensus       143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~  216 (933)
T KOG1274|consen  143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS  216 (933)
T ss_pred             eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence            999977  6679999999999999999988776554332        235678999999666666554    66799999


Q ss_pred             CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      ..+.+....+.....+ ..+..+.|+|+|+||++++.||.|.|||.++-..      |.....|.+++|.|+...+-...
T Consensus       217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence            9999998888765522 3499999999999999999999999999998222      33345689999999988776665


Q ss_pred             CCCeEEEE
Q 001490          618 NENRIKIL  625 (1068)
Q Consensus       618 ~dg~i~iw  625 (1068)
                      ..|...+|
T Consensus       290 ~~g~~~~~  297 (933)
T KOG1274|consen  290 ALGTLGVS  297 (933)
T ss_pred             eccccccC
Confidence            55555554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=3.2e-23  Score=216.64  Aligned_cols=216  Identities=16%  Similarity=0.201  Sum_probs=161.2

Q ss_pred             eecCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCccc---ceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490          367 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  442 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~---~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~  442 (1068)
                      ++.+|++.|+.+.||| +..+||+|+.|..|+||.+..|....   ....+.+..-.|.++.|+|.... ++++ +..|+
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence            4889999999999999 56789999999999999998543211   12233344457899999998774 4444 45899


Q ss_pred             EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCC-cEEEEEEccCCCEE
Q 001490          443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRRL  520 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~d~~~l  520 (1068)
                      ++|||+.+++.+..+.+|...|.+..|+  .||.+|++.+.|..|+|||.+.... ......|++ .-..+.|..+-..|
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl  229 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL  229 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence            9999999999999999999999999984  5899999999999999999887554 334455544 33456777666677


Q ss_pred             EEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeE
Q 001490          521 FSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL  588 (1068)
Q Consensus       521 ~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~  588 (1068)
                      ++.+.+......|++||.+. +..+.++.-..  ...|.--.|.||.+.++. |-.+.+++.+.+...++
T Consensus       230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP  297 (1012)
T KOG1445|consen  230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP  297 (1012)
T ss_pred             hhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence            77666555567799999875 33444444322  234555668899887766 44778888888876554

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.3e-23  Score=200.92  Aligned_cols=270  Identities=20%  Similarity=0.275  Sum_probs=214.6

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      .+.|+.|.|+|.+..| ++++.||++++||+...+....                    -.|+.++.+++|.+ ...+++
T Consensus        13 ~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             hhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence            4689999999999855 5667999999999988755532                    23889999999997 557889


Q ss_pred             EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  469 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~  469 (1068)
                      |+.||.|+++|++++...    .+..|..+|.|+.+++-..  .+++|+.|++|++||.........+. ....|.++..
T Consensus        71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            999999999999998754    4668999999999998776  79999999999999988755555554 3347888865


Q ss_pred             eecCCccEEEEEEcCCcEEEEeCCCCCceEEecC--CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC----ee
Q 001490          470 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI  543 (1068)
Q Consensus       470 ~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~----~~  543 (1068)
                          .|..|+.|+.+..|.+||+++.........  -.-.++++++-|++.-.++++-    +|+|.+=.++..    +.
T Consensus       144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence                556899999999999999998776653322  2337899999998877777765    445555444433    33


Q ss_pred             eeEEeccccc------cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          544 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       544 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      ...|+.|...      ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+...  ...|..++|+.+|..||+++
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence            4456666532      246899999999999999999999999999999888887654  23589999999999999987


Q ss_pred             C
Q 001490          618 N  618 (1068)
Q Consensus       618 ~  618 (1068)
                      .
T Consensus       294 s  294 (323)
T KOG1036|consen  294 S  294 (323)
T ss_pred             c
Confidence            6

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.5e-23  Score=202.26  Aligned_cols=272  Identities=16%  Similarity=0.228  Sum_probs=223.1

Q ss_pred             EEEEeCCcEEEEEEccCCC---------cccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001490          387 LGVAYSKHIVQLYAYHGGS---------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~---------~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  457 (1068)
                      |++|+....|.=+++.-..         .+.+...+..|.++|+++|.+  +.  ++++|+.|-+|+|||+.+...+..+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcce
Confidence            5566666666655553221         123344677899999999985  56  8999999999999999999999999


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEe
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd  537 (1068)
                      -.|.+.|+++.|.+......|++|+.||.|.+|+...-.....+..|.+.|+.++++|.|++.++.+.    |..+++||
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~----D~~lr~WN  155 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG----DQVLRTWN  155 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC----Cceeeeeh
Confidence            99999999999987655558999999999999999999889999999999999999999999999885    77899999


Q ss_pred             CCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      +-+|+.-....-..    .-..+.|+|.|.+++.++.+ .|-||.+.+......+...   ..+.++.|. ++..|++|+
T Consensus       156 LV~Gr~a~v~~L~~----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~  226 (362)
T KOG0294|consen  156 LVRGRVAFVLNLKN----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGG  226 (362)
T ss_pred             hhcCccceeeccCC----cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEec
Confidence            99988765555433    34459999999988887765 5899999888777666544   224445444 577899999


Q ss_pred             CCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccC
Q 001490          618 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  695 (1068)
Q Consensus       618 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  695 (1068)
                      +|+.|.+||..+..++..+.+|..+|..+.+--                    .|++.+|+++++||.|++||++...
T Consensus       227 d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------------------~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  227 DNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------------------NPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             CCceEEEeccCCCccceeeecchhheeeeEEEe--------------------cCCceEEEEeccCceEEEEEccccc
Confidence            999999999999999999999999999887431                    4778999999999999999988653

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=6.6e-23  Score=229.97  Aligned_cols=247  Identities=12%  Similarity=0.176  Sum_probs=189.0

Q ss_pred             EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC-CCcEEEEEEeCCCcEEEEECCCCc--------eeeEeccC
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH  460 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h  460 (1068)
                      |+.++.|++|+.....   ....+.+|.+.|.+++|+|+ +.  +|++|+.|++|+|||+.++.        .+..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            5567889999987653   33478899999999999997 56  89999999999999998642        34567899


Q ss_pred             CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC
Q 001490          461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  540 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~  540 (1068)
                      ...|.+++|+|.. ..+|++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.    ++.|++||+++
T Consensus       125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs  198 (568)
T PTZ00420        125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK  198 (568)
T ss_pred             CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence            9999999998842 2356799999999999999888766664 4568999999999999998875    56799999999


Q ss_pred             CeeeeEEeccccccCCe-----EEEEEecCCCEEEEEECCC----eEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCC
Q 001490          541 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       541 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      ++.+..+.+|.   +.+     ....|++++.++++++.|+    .|+|||+++ ++++.....+.....+......++|
T Consensus       199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            99999999887   433     2234568999999988664    799999985 6677666655443322233334468


Q ss_pred             CEEEEEECCCeEEEEECCCCceeeecc--ccccceeeeEEcCC
Q 001490          611 TLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPI  651 (1068)
Q Consensus       611 ~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~  651 (1068)
                      .++++|..|+.|++|++..+.. ..+.  .+..++.++++.|.
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence            8999999999999999986632 2222  13345566666653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.5e-24  Score=203.00  Aligned_cols=325  Identities=11%  Similarity=0.142  Sum_probs=239.4

Q ss_pred             CCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcc
Q 001490          596 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  675 (1068)
Q Consensus       596 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1068)
                      ++..+|+.++.......+.+++.|.+-+||.+++++++....+|.+.|+++.|+                      +.+.
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~  203 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL  203 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence            345568888887777789999999999999999999999999999999988886                      5677


Q ss_pred             cceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccC
Q 001490          676 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP  755 (1068)
Q Consensus       676 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  755 (1068)
                      ++++++.|++-.+|.....       +..|.......+     |....  .-.+ |...+         ..++.      
T Consensus       204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE--~e~s-De~~~---------d~d~~------  253 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE--EEHS-DEHNR---------DTDSS------  253 (481)
T ss_pred             eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh--hhcc-ccccc---------ccccc------
Confidence            7888888888888885421       111110000000     00000  0000 00000         00000      


Q ss_pred             CcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCE
Q 001490          756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV  834 (1068)
Q Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~  834 (1068)
                      .    ...|..+........+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|....+.++-.| ..++
T Consensus       254 ~----~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrL  328 (481)
T KOG0300|consen  254 E----KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRL  328 (481)
T ss_pred             c----ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceE
Confidence            0    0111112111112225999999999999999999999 89999999999999999999999999999999 8999


Q ss_pred             EEEEECCCeEEEEEcCCc-eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490          835 IAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  913 (1068)
Q Consensus       835 lasg~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  913 (1068)
                      +++.+.|.+.++||+... ..+..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+...    .+.+....    .
T Consensus       329 VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRtd----S  399 (481)
T KOG0300|consen  329 VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRTD----S  399 (481)
T ss_pred             EEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeecC----C
Confidence            999999999999999843 457889999999999999876 5689999999999999987432    22222222    3


Q ss_pred             CceEEEEeeCCCEEEEE-eCCeEEEEECCCceeee---eeccCCCcCEEEEEEecCC--CEEEEEECCCcEEEEEcCCC
Q 001490          914 SETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASNL  986 (1068)
Q Consensus       914 ~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~dg~v~vwd~~~~  986 (1068)
                      ++..++.+..+..||.- .+..|++||+......+   .-..+|..-|++++|+.+-  .-|++++-|..+.=|++...
T Consensus       400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            58899999999999995 55679999997554332   2246799999999999765  45889999999999998754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=3.4e-24  Score=218.17  Aligned_cols=287  Identities=14%  Similarity=0.179  Sum_probs=230.1

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      .|-+-|.++++|...+ .+.||+. |.|+|||+.......  .            ....-.-....-|+++.++|||+.|
T Consensus       417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--P------------vsqLdcl~rdnyiRSckL~pdgrtL  480 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--P------------VSQLDCLNRDNYIRSCKLLPDGRTL  480 (705)
T ss_pred             ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--c------------cccccccCcccceeeeEecCCCceE
Confidence            4666788899999887 5688887 899999997532110  1            1111122245689999999999999


Q ss_pred             EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  467 (1068)
Q Consensus       388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i  467 (1068)
                      ++|+.-.++.|||+..... +....+....-...+++.+||.+  +.+++..||.|.|||+.....++.|+||.+.+.+|
T Consensus       481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI  557 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  557 (705)
T ss_pred             EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence            9999999999999987543 22223444445678899999999  88999999999999999999999999999999999


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  547 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~  547 (1068)
                      .++.  ||..|.+|+-|.+||.||++.+....... ....|.++.++|.+.++++|-.    .+.+.+.... +.....+
T Consensus       558 dis~--dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql  629 (705)
T KOG0639|consen  558 DISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL  629 (705)
T ss_pred             EecC--CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence            9854  88899999999999999999877665443 2347899999999999999976    4456666543 3333444


Q ss_pred             eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          548 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       548 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      .-|.   ..|.++.|.+.|+++++.+.|+.+..|...-|..+...+..   ..|.++.+|.|.+++++|+.|..-.+|.+
T Consensus       630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            4455   88999999999999999999999999999999888777643   45899999999999999999988888764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.2e-24  Score=200.24  Aligned_cols=251  Identities=20%  Similarity=0.330  Sum_probs=208.3

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC--CCCcEEEEEEeCCCcEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~i  445 (1068)
                      -..|++.|..+...--|++||+|+.|++|+|+.+..+.....+.+|.||.++|+.++|..  -|.  +|++++.||.|.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi   84 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence            557999999999888999999999999999999998877677779999999999999976  577  9999999999999


Q ss_pred             EECCCCce--eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC---ceEEecCCCCcEEEEEEccC---C
Q 001490          446 WDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---G  517 (1068)
Q Consensus       446 wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d---~  517 (1068)
                      |.-+.|+-  .+....|...|++++|.|.+-|-.|++++.||.|.+.+++...   .......|.-.+++++|.|.   |
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            99777743  4566789999999999999999999999999999999988762   23355667778999999985   5


Q ss_pred             -----------CEEEEEeeCCCCceeEEEEeCCCCe--eeeEEeccccccCCeEEEEEecCC----CEEEEEECCCeEEE
Q 001490          518 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI  580 (1068)
Q Consensus       518 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~i  580 (1068)
                                 +.|++++.    |+.|.+|+..+++  ..+++.+|.   +.|+.++|.|.-    .+|+++++||++.|
T Consensus       165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence                       56888876    7779999988763  345578887   999999999974    57899999999999


Q ss_pred             EEcCCC--eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490          581 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       581 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      |.....  ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus       238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            976632  111122 11223458999999999999999999999999755

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.6e-21  Score=214.38  Aligned_cols=514  Identities=15%  Similarity=0.147  Sum_probs=325.5

Q ss_pred             cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCc-cEEEEEEcCCcEEEEeCC
Q 001490          415 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD  493 (1068)
Q Consensus       415 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~vwd~~  493 (1068)
                      +-...-....||+|++  .++... +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||..
T Consensus        14 g~n~~~~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             cccceecccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            3333344567999999  444333 668999999999999999999999999999887654 678899999999999999


Q ss_pred             CCCceEEecCCCCcEEEEEEcc---CCCEEEEEee-C--------CCCceeEEEEeCCCC--eeeeEEeccccccCCeEE
Q 001490          494 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGT-S--------KEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSV  559 (1068)
Q Consensus       494 ~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~~~~-~--------~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~  559 (1068)
                      .......+..... +..+.+.|   +-...+..+. +        .+...+++-+.+.+.  ........+.    .-.+
T Consensus        91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~~~  165 (792)
T KOG1963|consen   91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EPKS  165 (792)
T ss_pred             CcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc----CCcc
Confidence            8887776655443 22222212   1111111111 0        000111111111110  0011111111    1456


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE--eCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeecc
Q 001490          560 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  637 (1068)
Q Consensus       560 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1068)
                      +.+++.+++....- +..+.+|+..++......  ....+.-.+.++++||+++++|++..||+|.+|.--..      .
T Consensus       166 I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~  238 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S  238 (792)
T ss_pred             EEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence            77888777665554 456888988875521111  11122333789999999999999999999999975421      0


Q ss_pred             ccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEE
Q 001490          638 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  717 (1068)
Q Consensus       638 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~  717 (1068)
                      ...                                           -+.++|.-                 |...|.+++
T Consensus       239 ~~~-------------------------------------------~t~t~lHW-----------------H~~~V~~L~  258 (792)
T KOG1963|consen  239 DDS-------------------------------------------ETCTLLHW-----------------HHDEVNSLS  258 (792)
T ss_pred             ccc-------------------------------------------ccceEEEe-----------------cccccceeE
Confidence            000                                           11111111                 567899999


Q ss_pred             EecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001490          718 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  797 (1068)
Q Consensus       718 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~  797 (1068)
                      |+++|.+|++|+.+|.+.+|.+..++.                      ..   ++  .-..+|..+.+|||+.+.+...
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence            999999999999999999998765421                      11   11  1577899999999999887765


Q ss_pred             -CCeEEEEEccCceeEEEecCC-----------CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec------
Q 001490          798 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------  859 (1068)
Q Consensus       798 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~------  859 (1068)
                       |+.|.+....+.....++.+.           .+-.+.++++| --+.++..+..|.|.+||+.+.+.+..+.      
T Consensus       312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~  390 (792)
T KOG1963|consen  312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY  390 (792)
T ss_pred             cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence             899999888766555444332           23457889999 66778888899999999998876655442      


Q ss_pred             -----ccccCeEEEEEcCCCCEEEEEeC--------CC--cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC
Q 001490          860 -----GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  924 (1068)
Q Consensus       860 -----~h~~~V~~l~~spdg~~l~s~s~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  924 (1068)
                           .+.-.+++++.+-.|.+++|.-.        ||  .+++|-...........-.....|..  ..+..+.+++..
T Consensus       391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r  468 (792)
T KOG1963|consen  391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR  468 (792)
T ss_pred             cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence                 12345788888889999998642        33  47889877654332222122222222  123333444433


Q ss_pred             C-EEEE-EeCCeEEEEECCCceee---------eeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CcEEEEe
Q 001490          925 T-RFLL-VHETHLAIYEAEELTCL---------KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI  992 (1068)
Q Consensus       925 ~-~la~-~~d~~i~vwd~~~~~~~---------~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~~~  992 (1068)
                      . ..++ +.|+.++||-..+.+-+         ...-.-|..++++++||.||..|+ ++.|++|.+||..+ .++.+..
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~  547 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTE  547 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccc
Confidence            3 5665 68999999998432211         111123689999999999997666 55788999999999 5554443


Q ss_pred             ccccccCCCCccCcccceEE-EECCCCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 001490          993 LSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1044 (1068)
Q Consensus       993 ~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 1044 (1068)
                      ...        +.++...+. +-.+  ....+.....+.+.+|++....-.|.
T Consensus       548 ~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w~  590 (792)
T KOG1963|consen  548 GSR--------NWPIAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIWN  590 (792)
T ss_pred             ccc--------ccchHhHhhhcccc--cccceeeccCceEehHhhhhhheecc
Confidence            311        111111111 1122  24455666778999999988777773

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-20  Score=205.33  Aligned_cols=271  Identities=12%  Similarity=0.179  Sum_probs=229.6

Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCC-CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490          370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  448 (1068)
Q Consensus       370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~  448 (1068)
                      .|...-+.++|.|+|.+|.+++.||.|++|+.... +...   .+..+...|.+++...  .  .+++|+.+++|.+|..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEeeC
Confidence            68889999999999999999999999999998776 3222   3333777888887643  4  6999999999999999


Q ss_pred             CCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490          449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  528 (1068)
Q Consensus       449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~  528 (1068)
                      ..+..-..+....-+++.++++.  +|.+++.||.|-.|++-+.........+.+|..+|.++.|+|++.+||+...   
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g--~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~---  158 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSG--SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC---  158 (933)
T ss_pred             CCCCccceeeeeeccceEEEEec--CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence            98887666666778899999955  7889999999999999999999999999999999999999999999999876   


Q ss_pred             CceeEEEEeCCCCeeeeEEeccccc-----cCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490          529 GESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                       +|.|++||+.++.+..++.+....     ...+..++|+|++..++..+.|+.|.+|+..+......+........+..
T Consensus       159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence             778999999999887777654321     23467789999999999999999999999999999998877665555889


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccc
Q 001490          604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  657 (1068)
Q Consensus       604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  657 (1068)
                      +.|+|+|++||+++.+|.|.|||.++..    .......|.+++|.|+...+..
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~  287 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITL  287 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEE
Confidence            9999999999999999999999999722    1445677889999888766543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=9.2e-24  Score=214.62  Aligned_cols=264  Identities=17%  Similarity=0.241  Sum_probs=211.4

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CC
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS  385 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~  385 (1068)
                      -.|.++|+.+.+-|....++|+++..+.|.|||..+-.-.....      +   ...+...+.||...=..++|++. .-
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~---~~~Pdl~L~gH~~eg~glsWn~~~~g  191 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------G---ECRPDLRLKGHEKEGYGLSWNRQQEG  191 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------c---cCCCceEEEeecccccccccccccce
Confidence            46888999999999999999999999999999987543322100      0   11123348899988888999995 45


Q ss_pred             EEEEEeCCcEEEEEEccCCCc----ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC--CCceeeEecc
Q 001490          386 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG  459 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~----~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~  459 (1068)
                      +|++++.|++|++||+.....    +.....+.+|...|..++|++-... ++++++.|+.+.|||++  +.+......+
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            788999999999999976543    5556678999999999999998876 79999999999999999  5566678889


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEE-EEEeeCCCCceeEEEEe
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~~~~i~~wd  537 (1068)
                      |.+.|.+++|+|. ++..||+||.|++|.+||+++... ...+..|...|..+.|||....+ ++++.    ++.+.+||
T Consensus       271 h~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vWD  345 (422)
T KOG0264|consen  271 HSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVWD  345 (422)
T ss_pred             cCCceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEEe
Confidence            9999999999987 467999999999999999998765 56889999999999999976654 44443    77899999


Q ss_pred             CCCCeee-----------eEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCC
Q 001490          538 ESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  585 (1068)
Q Consensus       538 ~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~  585 (1068)
                      +..-...           ..+-.|..|...|..+.|+|+..++++ +++|+.+.||.+..
T Consensus       346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            8752221           112223334489999999999988765 78999999999863

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3.1e-23  Score=220.42  Aligned_cols=275  Identities=15%  Similarity=0.214  Sum_probs=222.7

Q ss_pred             ccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeE-EE
Q 001490          707 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA  785 (1068)
Q Consensus       707 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~  785 (1068)
                      .+|...+..+++.+.. .+++++.||++++|+-.....                      +....+  .++.+-|.+ ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~~~--~~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETHAF--EGPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccceec--ccCcceeeccce
Confidence            5688889888876655 689999999999997322211                      110111  125555555 66


Q ss_pred             Eec-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc
Q 001490          786 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  863 (1068)
Q Consensus       786 ~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~  863 (1068)
                      +-+ ++-.+++|+ |.++.+|...+..++.++.+|...|.+++... ++. +++|+.|.++++|..  +++...+++|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            664 444466666 89999999999999999999999999999877 665 999999999999965  567777999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCc
Q 001490          864 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  943 (1068)
Q Consensus       864 ~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~  943 (1068)
                      .|+++++-|++ .++|||.|++|++|.-.+       .++++.+|..   .|+.+++-+++.+|-++.||.|++|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999987 889999999999998754       7888999987   899999999999999999999999999 78


Q ss_pred             eeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEE
Q 001490          944 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1023 (1068)
Q Consensus       944 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 1023 (1068)
                      +++.+ ..+|+..|.++....+++.++++++|+++++|+..  ++...+.    +|..    .++  ++.+-+  +.-++
T Consensus       210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siW--sa~~L~--NgDIv  274 (745)
T KOG0301|consen  210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIW--SAKVLL--NGDIV  274 (745)
T ss_pred             ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceE--EEEEee--CCCEE
Confidence            88877 66899999999999999999999999999999988  5554444    2332    344  455554  45699


Q ss_pred             EEeCCCcEEEEeCC
Q 001490         1024 VGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1024 ~~~~dg~i~~w~~~ 1037 (1068)
                      +|+.||.|++|-..
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            99999999999876

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=1e-21  Score=206.60  Aligned_cols=273  Identities=13%  Similarity=0.148  Sum_probs=205.6

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      .|..++|-|||..|++.++  ..+.|||++.|..+..                   +++|.+.|.|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence            7999999999997766554  6899999999998876                   889999999999999999999999


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeee
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  471 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~  471 (1068)
                      .|+.|.+|+-.-...++     -.|.+.|.|+.|+|-..  .|++++- ...-+|..+.....    .|...+..++-++
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~----K~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVS----KHKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHH----hhhhheeEEEeee
Confidence            99999999976543332     26999999999999998  6888874 34778976544332    2444444455555


Q ss_pred             cCCccEEEEEEcCCcEEEEeCCCCCceEEec---CCCCcEEEEEEccCCC-----EEEEEeeCCCCceeEEEEeCCCCee
Q 001490          472 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI  543 (1068)
Q Consensus       472 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~-----~l~~~~~~~~~~~~i~~wd~~~~~~  543 (1068)
                      .+||++++.|-.+|+|.+-+-. ++....+.   +...+|.+++|+|...     .+++..-    ..++..+.+ +|+.
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~  214 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ  214 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence            7799999999999999988543 33333333   3556899999999542     2333221    223444443 3444


Q ss_pred             eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001490          544 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  623 (1068)
Q Consensus       544 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  623 (1068)
                      +.+-+...   ....|+.+.++|++++.|+.|+.+.+|-. .|-.+.++...  ...|+.++..|+++.++.|+.||+|.
T Consensus       215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence            43333222   45678999999999999999999999975 56666666543  24689999999999999999999999


Q ss_pred             EEECCC
Q 001490          624 ILETPE  629 (1068)
Q Consensus       624 iwd~~~  629 (1068)
                      .|++..
T Consensus       289 CyNl~f  294 (1081)
T KOG1538|consen  289 CYNLIF  294 (1081)
T ss_pred             hhhhHH
Confidence            998763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=1.9e-21  Score=212.45  Aligned_cols=289  Identities=11%  Similarity=0.056  Sum_probs=212.5

Q ss_pred             EEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE-EEEeCCcEEEEEEccC
Q 001490          325 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG  403 (1068)
Q Consensus       325 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l-as~~~d~~i~vwd~~~  403 (1068)
                      ++++++.|+.|++||+.+++.+..                   +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            778999999999999999887654                   3333 346789999999987 5667789999999998


Q ss_pred             CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc
Q 001490          404 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV  483 (1068)
Q Consensus       404 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~  483 (1068)
                      ++...   .+..+. .+..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.++++++  ++.++++++.
T Consensus        63 ~~~~~---~~~~~~-~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~  134 (300)
T TIGR03866        63 GEVIG---TLPSGP-DPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE  134 (300)
T ss_pred             CcEEE---eccCCC-CccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence            86543   333333 3567899999984 345556789999999999888777753 33457777765  7778888887


Q ss_pred             CC-cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----ccCCeE
Q 001490          484 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS  558 (1068)
Q Consensus       484 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~  558 (1068)
                      ++ .+.+||..+......... ...+..++|+++++++++++.   .++.|++||+.+++.+..+..+..    ......
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            65 467789877655443322 234577999999998876542   256799999999988776653210    011235


Q ss_pred             EEEEecCCCEEEE-EECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEECCCCceeeec
Q 001490          559 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA  636 (1068)
Q Consensus       559 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  636 (1068)
                      .++|+|+++++++ .+.++.+.+||..+++.+..+...   ..+.+++|+|+|++|+++. .++.|.+||+.+++.+..+
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6889999998665 456778999999998887665432   2478999999999998864 5899999999999888887


Q ss_pred             cccccceeeeEEc
Q 001490          637 GVLSDNLRKLSVN  649 (1068)
Q Consensus       637 ~~~~~~i~~~~~~  649 (1068)
                      +.. ...+.++++
T Consensus       288 ~~~-~~~~~~~~~  299 (300)
T TIGR03866       288 KVG-RLPWGVVVR  299 (300)
T ss_pred             Ecc-cccceeEeC
Confidence            654 333555554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=194.81  Aligned_cols=299  Identities=15%  Similarity=0.200  Sum_probs=224.4

Q ss_pred             CCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      .+|..+..+|....  -.|+.||+.|. +||+|..||.|.|||+.|...-+.                   +.+|..+|.
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~   69 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT   69 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence            56777788887543  78999999997 789999999999999998765443                   889999999


Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      +++||+||+.|++++.|..|.+||+..|..++..    ....+|+.+.|+|-.+...+++-- +..-.+-++..+... .
T Consensus        70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~-~  143 (405)
T KOG1273|consen   70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHS-V  143 (405)
T ss_pred             EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCcee-e
Confidence            9999999999999999999999999999876633    356789999999987764454443 444555555442211 1


Q ss_pred             ecc-CCCcEEEE--eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC-CcEEEEEEccCCCEEEEEeeCCCCcee
Q 001490          457 FEG-HGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESF  532 (1068)
Q Consensus       457 ~~~-h~~~v~~i--~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~  532 (1068)
                      +.. ..+.....  +-..+..|+++++|...|.+.++|..+.+++..++... ..|..+.++..|++++..+.    |..
T Consensus       144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRv  219 (405)
T KOG1273|consen  144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRV  219 (405)
T ss_pred             ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----Cce
Confidence            111 11111111  11235578899999999999999999999988887766 78999999999999999876    778


Q ss_pred             EEEEeCCCC-------ee--eeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCeEEEEEeCCCCCCCCc
Q 001490          533 LVEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENP  602 (1068)
Q Consensus       533 i~~wd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  602 (1068)
                      |+.|++..-       +.  .++++..- ..-.-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ ....
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~  297 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELL  297 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hhee
Confidence            999987621       11  12222111 112346788999999998876 456799999999999999987654 3467


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          603 RICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      .+.|+|-...+++. ..|.+++|.....
T Consensus       298 DV~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  298 DVNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             ecccccceeeeeec-cCCceEEEEeecc
Confidence            88999988888877 6699999987643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=4.8e-21  Score=209.18  Aligned_cols=279  Identities=18%  Similarity=0.237  Sum_probs=202.3

Q ss_pred             CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEECCCCceeeeccccccceee
Q 001490          567 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK  645 (1068)
Q Consensus       567 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  645 (1068)
                      ..+++++.|+.|++||+.+++.+..+..+.   .+..++|+|+++.+ ++++.++.|++||..+++....+.        
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence            467888999999999999999888887543   25789999999876 456678899999977543221110        


Q ss_pred             eEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceE
Q 001490          646 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  725 (1068)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  725 (1068)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (300)
T TIGR03866        71 --------------------------------------------------------------------------------   70 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001490          726 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL  803 (1068)
Q Consensus       726 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~i  803 (1068)
                                                                         ....+..++++|+++.++++.  ++.+++
T Consensus        71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~   99 (300)
T TIGR03866        71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV   99 (300)
T ss_pred             ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence                                                               000123456777777665543  578889


Q ss_pred             EEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC-eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEE-e
Q 001490          804 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G  881 (1068)
Q Consensus       804 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s  881 (1068)
                      ||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+..++|+|||++|+.+ .
T Consensus       100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            99888777776653 33467899999 899999888775 567889988877655442 3346789999999988654 4


Q ss_pred             CCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceeeeeeccCCCcCEEE
Q 001490          882 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ  959 (1068)
Q Consensus       882 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~  959 (1068)
                      .++.|++||+.+++............+.. ......++|+|+|+++++  +.++.+.+||..+++.+....  +...+.+
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~  253 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ  253 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence            69999999999876433221111110100 112456899999998655  456789999999888776543  3457889


Q ss_pred             EEEecCCCEEEEE-ECCCcEEEEEcCCCcEEEEec
Q 001490          960 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       960 l~fs~dg~~l~t~-~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      ++|+|+|++|+++ +.+|.|.+||+.+++.+..+.
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9999999999876 468999999999999998887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-22  Score=205.27  Aligned_cols=288  Identities=14%  Similarity=0.217  Sum_probs=233.8

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC-EEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG  388 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~-~la  388 (1068)
                      .+.|++|.|+|.-+ +|.+++.|++++||.+.........++               .+  -..+|.+.+|.|+|. .++
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~---------------~l--~~fPi~~a~f~p~G~~~i~  274 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSI---------------HL--EKFPIQKAEFAPNGHSVIF  274 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheee---------------ee--ccCccceeeecCCCceEEE
Confidence            35899999999987 889999999999999975332221111               12  346899999999999 888


Q ss_pred             EEeCCcEEEEEEccCCCcccceEEEcccc-ccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490          389 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  467 (1068)
Q Consensus       389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i  467 (1068)
                      +++.....+.||+.+.+..+. ..+.++. ..+.....|++++  +|+..|..|.|.+....+++.+.+++ -.+.|..+
T Consensus       275 ~s~rrky~ysyDle~ak~~k~-~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKVTKL-KPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             ecccceEEEEeeccccccccc-cCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            999999999999999875432 2344544 3577888999999  89999999999999999999999887 67889999


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC-cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC------
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------  540 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~------  540 (1068)
                      +|+  .+++.|++++.+|.|.+||++...++..+...+. .-+++|.++++.++|+|+.    .|.|.|||..+      
T Consensus       351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence            997  4789999999999999999999988887766554 4578899999999999986    66899999653      


Q ss_pred             CeeeeEEeccccccCCeEEEEEecCCCEEEEEE--CCCeEEEEEcCCCeEEEEEeCC-CCCCCCceEEEecCCCEEEEEE
Q 001490          541 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       541 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      .+++..+....   ..|.++.|+++.+.|+.+|  .+..+++-++.+......++.. .....|+|++|||.+.+||+|.
T Consensus       425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            34555555555   7899999999999888876  5778999999887777666543 2345689999999999999999


Q ss_pred             CCCeEEEEECC
Q 001490          618 NENRIKILETP  628 (1068)
Q Consensus       618 ~dg~i~iwd~~  628 (1068)
                      .+|.+.+|.+.
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            99999999874

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-22  Score=205.57  Aligned_cols=292  Identities=15%  Similarity=0.191  Sum_probs=229.7

Q ss_pred             EEEEEcCc-CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCC-CcceEEEEECCCCCEEEEEeC-CcEEEEEEc
Q 001490          325 LLLVGTNV-GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY  401 (1068)
Q Consensus       325 lla~gs~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~spdg~~las~~~-d~~i~vwd~  401 (1068)
                      ++.+++.| .++.+||+.+|....+                   +++. ...-.++..- .+.|++++.. ...+.+|.+
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~-------------------ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i   68 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQ-------------------YKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI   68 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEE-------------------ecCcccccchhhhhh-chhheeeecccCcccccccc
Confidence            44445555 4599999999987654                   2222 1111111111 2367777743 457999999


Q ss_pred             cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEE
Q 001490          402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  481 (1068)
Q Consensus       402 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~  481 (1068)
                      .......+.   .--.++|.+++-+|+|.  +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.|+.  ||.+|++|
T Consensus        69 ~k~~~~~q~---~v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~--dgs~iiTg  141 (476)
T KOG0646|consen   69 LKKDQVVQY---IVLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD--DGSHIITG  141 (476)
T ss_pred             Cchhhhhhh---cccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC--CCcEEEec
Confidence            765544322   23457899999999998  788888999999999999999999999999999999954  88999999


Q ss_pred             EcCCcEEEEeCC---------CCCceEEecCCCCcEEEEEEccC--CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001490          482 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  550 (1068)
Q Consensus       482 s~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  550 (1068)
                      +.||.|.+|++.         +......+..|.-+|+.+...+.  ..++++++.    |.++++||+..|..+.++...
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence            999999999763         23456678888889999988765  357888875    778999999999999888765


Q ss_pred             ccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----------------eEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          551 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       551 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      .    .+.+++.+|.+..+++|+++|.|.+.++...                ..+..+.+|.....|+|++++-||.+|+
T Consensus       218 ~----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 S----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             C----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence            4    8999999999999999999999999887542                2344555555545899999999999999


Q ss_pred             EEECCCeEEEEECCCCceeeeccccccceeeeEEcCC
Q 001490          615 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  651 (1068)
Q Consensus       615 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  651 (1068)
                      +|+.||.+.|||..+.++++++....++|+.+.+.|.
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            9999999999999999999988878888988888654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=9.3e-23  Score=189.49  Aligned_cols=255  Identities=16%  Similarity=0.209  Sum_probs=203.5

Q ss_pred             cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--C
Q 001490          306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--D  383 (1068)
Q Consensus       306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--d  383 (1068)
                      -..|.+.|-.+...--|+ .|||++.|++|+|+.+.++.....                ...|.||+++|..++|..  -
T Consensus         7 dt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk~   69 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPKF   69 (299)
T ss_pred             hhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccccc
Confidence            357899999888888898 469999999999999987654211                112889999999999987  7


Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-c--eeeEeccC
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGH  460 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h  460 (1068)
                      |.+||+++.||.|.||.-++|. ..+......|...|++++|.|.+--+.|++++.||.|.|.+..+. .  .......|
T Consensus        70 G~iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH  148 (299)
T KOG1332|consen   70 GTILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAH  148 (299)
T ss_pred             CcEeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcc
Confidence            9999999999999999999884 444446778999999999999988889999999999999987654 1  22445689


Q ss_pred             CCcEEEEeeeecCC-c-----------cEEEEEEcCCcEEEEeCCCCCc--eEEecCCCCcEEEEEEccCC----CEEEE
Q 001490          461 GAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFS  522 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~-~-----------~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~~  522 (1068)
                      .-.|+++++.|..- |           +.|++|+.|..|++|+.+...-  ...+..|...|+.++|.|.-    .+|++
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS  228 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS  228 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence            99999999987521 2           5799999999999999988643  23478888999999999964    47888


Q ss_pred             EeeCCCCceeEEEEeCCCC--eee-eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 001490          523 CGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  585 (1068)
Q Consensus       523 ~~~~~~~~~~i~~wd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~  585 (1068)
                      |+.    |+.+.||-....  ... ..+....   ..+..+.|+..|+.|+.++.|+.+.+|.-..
T Consensus       229 ~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  229 CSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            876    667999976521  111 1122233   6799999999999999999999999997553

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=9.1e-22  Score=189.96  Aligned_cols=270  Identities=14%  Similarity=0.103  Sum_probs=211.1

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  450 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~  450 (1068)
                      .+..|..+.|+|.+..|++++.||++++||+.......    .-.|..++.+++|.++.+   +++|+.||.|+.+|+.+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence            56899999999999999999999999999999874332    225899999999998765   89999999999999998


Q ss_pred             CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          451 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       451 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      +.... +..|..+|.++...+..  ..+++|+.|++|++||.+.......+.... .|.++..  .|..|++++.    +
T Consensus        85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~  154 (323)
T KOG1036|consen   85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D  154 (323)
T ss_pred             Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence            87654 45699999999987643  489999999999999998754444444333 6766664  4667777665    5


Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC----eEEEEEeCCCC-------CC
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP  599 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~  599 (1068)
                      ..+.+||+++.......... .-+..++++++-|++.-.++++-||.|.+=.++..    +....++.|..       ..
T Consensus       155 r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            57999999876543322111 11367899999999888999999999988666554    33334444321       23


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccc
Q 001490          600 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  658 (1068)
Q Consensus       600 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  658 (1068)
                      +|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            68999999999999999999999999999999999888888889999998655554433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.6e-22  Score=203.16  Aligned_cols=302  Identities=16%  Similarity=0.200  Sum_probs=225.1

Q ss_pred             EeCCC-cEEEEECCCCceeeEeccC-CCcEEEEeeeecCCccEEEEEE-cCCcEEEEeCCCCCceEEecCCCCcEEEEEE
Q 001490          437 CGDDK-TIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  513 (1068)
Q Consensus       437 ~~~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  513 (1068)
                      ++.|. ++.+||+.+|....++++. ...-.++...   ++.+++++. ....|.+|.+.............+++.+++-
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s   89 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALAS   89 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhhhcccccceeeeec
Confidence            33444 5999999999999888765 2222222211   224666654 4457999998776666655666778999999


Q ss_pred             ccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC--------
Q 001490          514 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------  585 (1068)
Q Consensus       514 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--------  585 (1068)
                      +|+|.+|+.++.    .+.|++|.+.+|.++..+..|.   ..|+++.|+.|+.++++||.||.|.+|.+.+        
T Consensus        90 ~n~G~~l~ag~i----~g~lYlWelssG~LL~v~~aHY---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   90 SNLGYFLLAGTI----SGNLYLWELSSGILLNVLSAHY---QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             CCCceEEEeecc----cCcEEEEEeccccHHHHHHhhc---cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence            999999999865    4459999999999999998888   9999999999999999999999999998642        


Q ss_pred             -CeEEEEEeCCCCCCCCceEEEecC--CCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccC
Q 001490          586 -VQLLTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  662 (1068)
Q Consensus       586 -~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  662 (1068)
                       -+++..+..|  .-+|..+...+.  ..++++++.|.++++||+..+..+.++.                         
T Consensus       163 ~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------------------------  215 (476)
T KOG0646|consen  163 SVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------------------------  215 (476)
T ss_pred             CccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-------------------------
Confidence             2344444433  455777766654  4578888889999999888765443322                         


Q ss_pred             eeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCC
Q 001490          663 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  742 (1068)
Q Consensus       663 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~  742 (1068)
                                                                    ....+.+++..|....+.+|+.+|.|.+.++..-
T Consensus       216 ----------------------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  216 ----------------------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL  249 (476)
T ss_pred             ----------------------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence                                                          2246788999999999999999998887654321


Q ss_pred             ccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCC--
Q 001490          743 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--  820 (1068)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--  820 (1068)
                      .                                +....+.                  .+.++ ..+..+..+.+|.+  
T Consensus       250 ~--------------------------------~~~~~v~------------------~k~~~-~~~t~~~~~~Gh~~~~  278 (476)
T KOG0646|consen  250 S--------------------------------GQSAGVN------------------QKGRH-EENTQINVLVGHENES  278 (476)
T ss_pred             C--------------------------------ccccccc------------------ccccc-cccceeeeeccccCCc
Confidence            1                                0111111                  11111 12445566777877  


Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCC
Q 001490          821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  873 (1068)
Q Consensus       821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd  873 (1068)
                      .|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|-
T Consensus       279 ~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  279 AITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             ceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence            999999999 9999999999999999999999999998877889999999664

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.9e-22  Score=205.64  Aligned_cols=284  Identities=12%  Similarity=0.147  Sum_probs=233.4

Q ss_pred             cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC---eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeE
Q 001490          502 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  578 (1068)
Q Consensus       502 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i  578 (1068)
                      ..|+.-|..+++|...+++++|+     .+.|++||+...   ..+..+.... ....|+++...|||+.|++|++-.++
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEecccccee
Confidence            34666788899999999999986     678999998743   2333443332 24679999999999999999999999


Q ss_pred             EEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccc
Q 001490          579 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  658 (1068)
Q Consensus       579 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  658 (1068)
                      .|||+....+....+.......+..++.+||.++.+++..||.|.|||+.+...+..+++|.+...|+.++         
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis---------  560 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---------  560 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec---------
Confidence            99999877665555444444568899999999999999999999999999999999999999999999986         


Q ss_pred             cccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEe
Q 001490          659 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  738 (1068)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~  738 (1068)
                                   +||..|.+|+-|+++|.||+......+...       ....|.++..+|++.++++|-.++.+.+..
T Consensus       561 -------------~dGtklWTGGlDntvRcWDlregrqlqqhd-------F~SQIfSLg~cP~~dWlavGMens~vevlh  620 (705)
T KOG0639|consen  561 -------------KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-------FSSQIFSLGYCPTGDWLAVGMENSNVEVLH  620 (705)
T ss_pred             -------------CCCceeecCCCccceeehhhhhhhhhhhhh-------hhhhheecccCCCccceeeecccCcEEEEe
Confidence                         788899999999999999987655444333       346799999999999999999999888765


Q ss_pred             ccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecC
Q 001490          739 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP  817 (1068)
Q Consensus       739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~  817 (1068)
                      .....                       .....    -|+..|.++.|++-|+++++.+ |+-+-.|.+.-|..+...+ 
T Consensus       621 ~skp~-----------------------kyqlh----lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-  672 (705)
T KOG0639|consen  621 TSKPE-----------------------KYQLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-  672 (705)
T ss_pred             cCCcc-----------------------ceeec----ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-
Confidence            43221                       11111    2889999999999999999887 8889999998888776665 


Q ss_pred             CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEc
Q 001490          818 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  849 (1068)
Q Consensus       818 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  849 (1068)
                      ....|.++.+|. |+++|++|+.|+...||.+
T Consensus       673 E~SsVlsCDIS~-ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  673 ESSSVLSCDISF-DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCcceeeeecc-CceEEEecCCCcceEEEEE
Confidence            567899999999 8999999999998888865

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=1.6e-21  Score=185.92  Aligned_cols=320  Identities=13%  Similarity=0.187  Sum_probs=230.9

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CCC
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS  385 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg~  385 (1068)
                      ..|.+.|+.+...|...+++.+|+.||.|.+||++....-....+ +-+ ..|.  .....-.+|.-.|..+.|-| |..
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence            357789999999997777899999999999999976442111000 000 0010  11122457889999999999 677


Q ss_pred             EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCC-cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490          386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  464 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  464 (1068)
                      .+.+++.|.+++|||+++-+...   .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.|
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            88899999999999999865433   23 3456788888888643 3378888889999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490          465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  544 (1068)
Q Consensus       465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~  544 (1068)
                      .++.|+|.. ...|++|+.||.|++||++...                                  +..++.|..+++..
T Consensus       192 laV~Wsp~~-e~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~~  236 (397)
T KOG4283|consen  192 LAVEWSPSS-EWVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKRP  236 (397)
T ss_pred             EEEEeccCc-eeEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCccC
Confidence            999999874 4688999999999999987531                                  11333444333322


Q ss_pred             eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC----CCCCCCceEEEecCCCEEEEEECCC
Q 001490          545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANEN  620 (1068)
Q Consensus       545 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg  620 (1068)
                      ..++....+.+.+..++|+.++.++++.+.|..+++|+...|+....-.++    .....-..+. +.+...++.--.++
T Consensus       237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~  315 (397)
T KOG4283|consen  237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG  315 (397)
T ss_pred             ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence            233322334488999999999999999999999999999987643222111    0000001122 33444555555678


Q ss_pred             eEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490          621 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  692 (1068)
Q Consensus       621 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~  692 (1068)
                      .+.++++-++..+..+..|-..+.+.++.                      ++-....++..|+.+..|-..
T Consensus       316 ~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  316 SLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence            99999999999999999998888888875                      556667788888888888753

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.2e-22  Score=200.69  Aligned_cols=281  Identities=14%  Similarity=0.187  Sum_probs=222.5

Q ss_pred             CCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCc-eEEEeecCccEEEEeccCCccCCCccc
Q 001490          672 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEA  750 (1068)
Q Consensus       672 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~  750 (1068)
                      |....+++++.|+++++|.++.......+.+.+.    ..+|.+..|.|+|. .+++++....++.||+...+....   
T Consensus       223 p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~----~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~---  295 (514)
T KOG2055|consen  223 PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE----KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL---  295 (514)
T ss_pred             CCCceEEEecCCCcEEEEEecCccChhheeeeec----cCccceeeecCCCceEEEecccceEEEEeeccccccccc---
Confidence            5667789999999999999987766666555443    47899999999999 788888888999999865432111   


Q ss_pred             eeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeC
Q 001490          751 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  829 (1068)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  829 (1068)
                               .+..|.           ....+....+|+++++|+..+ .|.|.+....|++.+..++ -.+.|..++|+.
T Consensus       296 ---------~~~~g~-----------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS  354 (514)
T KOG2055|consen  296 ---------KPPYGV-----------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS  354 (514)
T ss_pred             ---------cCCCCc-----------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec
Confidence                     111111           244677889999999999998 6999999999999998887 667899999999


Q ss_pred             CCCCEEEEEECCCeEEEEEcCCceeeeeeccccc-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eeeeeeecCCC
Q 001490          830 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDG  907 (1068)
Q Consensus       830 ~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~  907 (1068)
                       +++.|++.+.+|.|++||+....++.++....+ .-++++.|++|.+||+|+..|.|.|||.++.-. ...+++.....
T Consensus       355 -dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN  433 (514)
T KOG2055|consen  355 -DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN  433 (514)
T ss_pred             -CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence             889998889999999999999999888874322 235688889999999999999999999765221 11223333333


Q ss_pred             cccCCCCceEEEEeeCCCEEEEE---eCCeEEEEECCCceeeeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490          908 VMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       908 ~~~~~~~v~~~~~spdg~~la~~---~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vwd  982 (1068)
                      -.   ..|+++.|++|++.||.+   .++.+++--+.+......|....  -+.|++++|||.|.+|+.|..+|.|.+|.
T Consensus       434 Lt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  434 LT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            33   379999999999999983   56789999998888777765442  57899999999999999999999999998


Q ss_pred             cC
Q 001490          983 AS  984 (1068)
Q Consensus       983 ~~  984 (1068)
                      +.
T Consensus       511 L~  512 (514)
T KOG2055|consen  511 LH  512 (514)
T ss_pred             ec
Confidence            64

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=1.6e-21  Score=197.66  Aligned_cols=304  Identities=17%  Similarity=0.189  Sum_probs=228.6

Q ss_pred             eeeecccCCCCceEEEEcCCCC-eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .....+-|.+.|++++|+|... .++|+|+..|+|-+||+.+.+......               .++..|..+|.++.|
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F  242 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKF  242 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEe
Confidence            3344566788999999999887 799999999999999997544443322               237789999999999


Q ss_pred             CCC-CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce-eeEec
Q 001490          381 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFE  458 (1068)
Q Consensus       381 spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~  458 (1068)
                      +|. -..+++.+.||+|++-|++++.. .....+......+..+.|+.+..  .++.++.=|.+.+||.+++.. ...+.
T Consensus       243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~  319 (498)
T KOG4328|consen  243 SPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLR  319 (498)
T ss_pred             cCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhh
Confidence            994 56788899999999999998642 22223333445678889998888  677888788999999998665 56667


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce----EEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                      -|...|.+++++|. ...+|++++.|++.+|||++.....    .....|...|.+..|||++-.|++.+.    |..|+
T Consensus       320 lh~kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IR  394 (498)
T KOG4328|consen  320 LHKKKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIR  394 (498)
T ss_pred             hhhcccceeecCCC-CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceE
Confidence            79999999999987 4479999999999999999875543    345567789999999998888888775    66799


Q ss_pred             EEeCC----CCeeeeEEecccccc--CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          535 EWNES----EGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       535 ~wd~~----~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      +||..    .-....++.....+.  -......|.|+.+++++|-.-..|-|+|-..++.+..+-.+.......-..|+|
T Consensus       395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP  474 (498)
T KOG4328|consen  395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP  474 (498)
T ss_pred             EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence            99983    333333333222111  123456799999999999999999999999999887765443322223457999


Q ss_pred             CCC-EEEEEECCCeEEEEECC
Q 001490          609 NGT-LLAVIANENRIKILETP  628 (1068)
Q Consensus       609 ~~~-~l~~~~~dg~i~iwd~~  628 (1068)
                      -+. +++-++..|.|+||..+
T Consensus       475 ~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  475 MRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             cccceeccCCccceEEEEecC
Confidence            777 44555567889988654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1e-21  Score=205.03  Aligned_cols=342  Identities=12%  Similarity=0.159  Sum_probs=254.8

Q ss_pred             CccCCCCccccccccc-------cCCCccCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcce
Q 001490          274 PDYSPKSSLKKEMFQS-------FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL  346 (1068)
Q Consensus       274 ~~fsP~~s~~~~~~~~-------~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~  346 (1068)
                      +..+|+-...+.....       -.+..+..+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||+++
T Consensus       357 LYL~PR~rK~rlniDpe~LiPkLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcv  435 (733)
T KOG0650|consen  357 LYLAPRVRKMRLNIDPESLIPKLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCV  435 (733)
T ss_pred             hhhCcccccceecCCHHHhcccCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEE
Confidence            3456665444433221       2334567788899999999999999999999998 7899999999999999999999


Q ss_pred             eeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC--EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEE
Q 001490          347 FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA  424 (1068)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~--~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~  424 (1068)
                      ++..+                    .+.|.||+|+|.++  .||++..+. +.|-+..-|..+..     +.+.      
T Consensus       436 r~~~~--------------------d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t~------  483 (733)
T KOG0650|consen  436 RTVQF--------------------DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPTK------  483 (733)
T ss_pred             EEEee--------------------cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cchh------
Confidence            76432                    35899999999765  455554444 66666554432211     0000      


Q ss_pred             EcCCCCcEEEEEE----eCCCcEEEEECCCCc----eeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCC
Q 001490          425 FSAPCKQISVITC----GDDKTIKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYD  493 (1068)
Q Consensus       425 ~s~d~~~~~l~s~----~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~  493 (1068)
                           .  .|+++    ..++.+..|.-....    -++..-.|...|..+.|+.  .|.+|++...+   ..|.|.++.
T Consensus       484 -----e--ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  484 -----E--LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             -----h--hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecc
Confidence                 0  11111    235577788644211    1334446999999999987  66799988654   468899988


Q ss_pred             CCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE
Q 001490          494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  573 (1068)
Q Consensus       494 ~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s  573 (1068)
                      ....+..+....+.+.++.|+|...+|++++     ...|++||+..++.++++....   ..|..++.+|.|..|+.|+
T Consensus       555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             cccccCchhhcCCceeEEEecCCCceEEEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEec
Confidence            8777777777788999999999999999887     4569999999988888877655   7899999999999999999


Q ss_pred             CCCeEEEEEcCCC-eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC------CC---ceeeeccccccc-
Q 001490          574 DDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN-  642 (1068)
Q Consensus       574 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~~~~~~~~~-  642 (1068)
                      .|+.+..+|+.-. ++.+++..|.  ..+.+|+|++.-.++++|+.||++.|+.-.      .+   -++..+++|... 
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~--~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~  704 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHE--KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN  704 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhh--hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence            9999999999854 5666777664  458999999999999999999999998532      11   234566676654 


Q ss_pred             ---eeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceee
Q 001490          643 ---LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE  689 (1068)
Q Consensus       643 ---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~w  689 (1068)
                         |....|+                      |...+|++++.|++|++|
T Consensus       705 ~~gVLd~~wH----------------------P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  705 DLGVLDTIWH----------------------PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ccceEeeccc----------------------CCCceEEecCCCceEEee
Confidence               5555554                      667889999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=3.2e-21  Score=183.86  Aligned_cols=305  Identities=14%  Similarity=0.160  Sum_probs=219.7

Q ss_pred             ccccEEEEEEec-CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001490          709 KANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  787 (1068)
Q Consensus       709 ~~~~i~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  787 (1068)
                      |.+.|+++.+.+ .|+++++|+.||.+.+||+.............          ...|+... ..+.+|...|..+.|-
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIWY  110 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEEe
Confidence            788999999876 58999999999999999997654321111111          11111111 1223588999999998


Q ss_pred             cCC-CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCC--CCEEEEEECCCeEEEEEcCCceeeeeeccccc
Q 001490          788 KND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSK  863 (1068)
Q Consensus       788 ~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d--~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~  863 (1068)
                      |-. -.+.+++ |.++++||..|.+....|+ -.+.|.+-++||-.  -.++|+|..|-.|++.|+.+|.....+.||.+
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~  189 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD  189 (397)
T ss_pred             eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence            844 4444555 8999999999999888886 55667777777621  35888999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceee-------eeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCe
Q 001490          864 RVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQT-------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH  934 (1068)
Q Consensus       864 ~V~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~  934 (1068)
                      .|.++.|+|...+ |++|+.||.|++||+.......       .+..+..+....+.+.|..++|+.||.++++ +.|..
T Consensus       190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            9999999998776 6799999999999998641100       0111112222233358999999999999998 89999


Q ss_pred             EEEEECCCceeeeeecc--CCCc---CEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccc
Q 001490          935 LAIYEAEELTCLKQWFP--ISSV---PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1009 (1068)
Q Consensus       935 i~vwd~~~~~~~~~~~~--~h~~---~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1009 (1068)
                      +++|+..+|+....-+.  .|+.   .-..+. +.+...++---.|+.+.++++-+|+.+..+..+        .  -..
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--------~--k~i  338 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--------L--KRI  338 (397)
T ss_pred             eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--------c--cee
Confidence            99999998865432111  1211   111122 445455555556789999999999999888722        1  233


Q ss_pred             eEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490         1010 HAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1010 ~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                      .|.++-| +-+...+|+.|+.|..|-..
T Consensus       339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEeecC-chhhhhccccCCcccccccc
Confidence            4677888 67889999999999999763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-21  Score=188.14  Aligned_cols=282  Identities=15%  Similarity=0.215  Sum_probs=213.7

Q ss_pred             eEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490          375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  454 (1068)
Q Consensus       375 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  454 (1068)
                      ..|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999976444   6789999999999999999  8999999999999999999999


Q ss_pred             eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC----cEEEEEEccCCCEEEEEeeCCCCc
Q 001490          455 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       455 ~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      +.+. ...+|+.+.|+|......+++--... -.+-++.............+    ...+..|.+.|+++++|..    .
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K  174 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K  174 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence            9886 78899999999987766655544333 44444444222221111111    1233468899999999975    6


Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE---------EEEeCCCCCCCC
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPEN  601 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v  601 (1068)
                      |.+.++|..+-+++..++-..  ...|..+.++..|++++.-+.|+.|+.|+...-...         +.+..--....-
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            779999999999888877543  367899999999999999999999999998631111         111100001123


Q ss_pred             ceEEEecCCCEEEEEEC-CCeEEEEECCCCceeeeccccc-cceeeeEEcCCccccccccccCeeeecCCCCCCccccee
Q 001490          602 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  679 (1068)
Q Consensus       602 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  679 (1068)
                      .+++|+.+|.+++.++. ...++||....|..++.+.|.+ +....+.+.|....                      +++
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s  310 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS  310 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence            57899999999887764 5789999999999999999887 55666677654332                      333


Q ss_pred             ecccccceeeccc
Q 001490          680 VEAENKSEVEKPL  692 (1068)
Q Consensus       680 ~~~d~~i~~wd~~  692 (1068)
                      . ..|.+.+|...
T Consensus       311 i-~sg~v~iw~~~  322 (405)
T KOG1273|consen  311 I-ASGVVYIWAVV  322 (405)
T ss_pred             c-cCCceEEEEee
Confidence            3 55888999854

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=1.4e-21  Score=198.75  Aligned_cols=253  Identities=19%  Similarity=0.317  Sum_probs=202.2

Q ss_pred             ecCCCcceEEEEECCCC-CEEEEEeCCcEEEEEEccCCCcc-------cceEEEccccccEEEEEEcCCCCcEEEEEEeC
Q 001490          368 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  439 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~-------~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~  439 (1068)
                      ...|.+.|..+..-|.. ..+|+.+..+.|.|||...-...       +....+.+|.+.-..++|++.... .+++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence            44589999999999965 55666788899999998754322       233478899998889999998765 7999999


Q ss_pred             CCcEEEEECCCCc-------eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC--CCCceEEecCCCCcEEE
Q 001490          440 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR  510 (1068)
Q Consensus       440 d~~i~iwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~--~~~~~~~~~~~~~~i~~  510 (1068)
                      |++|++||+....       ....+.+|...|..++|++. +..++++++.|+.+.+||.+  +.+.......|...+.|
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            9999999987543       24567899999999999987 44689999999999999999  55666778889999999


Q ss_pred             EEEccCC-CEEEEEeeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCe
Q 001490          511 MAYSANG-RRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  587 (1068)
Q Consensus       511 ~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~  587 (1068)
                      ++|+|-+ ..||+++.    |++|.+||+++- ..+.++.+|.   ..|..+.|+|... .+++++.|+.+.+||+..-.
T Consensus       278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            9999955 55666664    678999999874 4677788887   9999999999865 45668899999999996422


Q ss_pred             EE------------EEEeCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEECCC
Q 001490          588 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE  629 (1068)
Q Consensus       588 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~  629 (1068)
                      ..            -.+...++...|..+.|+|+.. .+++.++|+.+.||....
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            21            1244456677799999999765 577788999999999874

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.2e-21  Score=204.59  Aligned_cols=324  Identities=13%  Similarity=0.169  Sum_probs=240.8

Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEE
Q 001490          365 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  444 (1068)
Q Consensus       365 ~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~  444 (1068)
                      ..++.||++.|.+++..|.|.+||+|+.||+|+||.+.||.+++..    ...+.|.|++|+|.+..-+|+.+- ...+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceE
Confidence            3468899999999999999999999999999999999999988743    234579999999998864555544 44477


Q ss_pred             EEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEE----EcCCcEEEEeCCCCC----ceEEecCCCCcEEEEEEccC
Q 001490          445 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN  516 (1068)
Q Consensus       445 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~----s~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d  516 (1068)
                      |-|..-|..+..-.  .             ...|+++    ..++.+..|.-....    .+.....+...|..+.|+.+
T Consensus       468 ivnp~~G~~~e~~~--t-------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGP--T-------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             EeCccccchhhhcc--h-------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            77755553221110  0             0111111    234567778654222    23355567789999999999


Q ss_pred             CCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCC
Q 001490          517 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  596 (1068)
Q Consensus       517 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  596 (1068)
                      |.||++...++ +...|.|.++..+.....|....   +.+.++.|+|...++++++. ..|+|||+....++..+... 
T Consensus       533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-  606 (733)
T KOG0650|consen  533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-  606 (733)
T ss_pred             CceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence            99999987654 36679999998777666665544   78999999999999998875 57999999987777666533 


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcc
Q 001490          597 GLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  675 (1068)
Q Consensus       597 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1068)
                       ...|..++.+|.|..|++++.|+.+..+|+.-. ++.+.++-|...++++++++                      .-.
T Consensus       607 -~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~----------------------ryP  663 (733)
T KOG0650|consen  607 -SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK----------------------RYP  663 (733)
T ss_pred             -CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc----------------------ccc
Confidence             345889999999999999999999999999854 67888999999999999974                      445


Q ss_pred             cceeecccccceeecccccCCcccceeecCC---cccccc----EEEEEEecCCceEEEeecCccEEEE
Q 001490          676 PEISVEAENKSEVEKPLFARPSECQSLLLPS---KVKANK----ISRLTYNNGGQAIFALASNGVHLMW  737 (1068)
Q Consensus       676 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~~~~~~----i~~l~~s~~g~~l~~~~~dg~i~iw  737 (1068)
                      ++++++.|+++.++.-..........+..|.   .+|...    |....|+|...+|++++.||+|++|
T Consensus       664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            6788888888888763322211111111111   234433    8888999999999999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4e-23  Score=220.30  Aligned_cols=236  Identities=17%  Similarity=0.287  Sum_probs=213.4

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      ...|...|.++..-..++.+++|+.|..+-+|.+..-..+.   .+.+|..+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            33588899999987788999999999999999987654443   5789999999999999988  899999999999999


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      ++.++.++++.||...+.++.|+|  -+.+.++++.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.  
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence            999999999999999999999987  5678999999999999999999999999999999999999999999999875  


Q ss_pred             CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490          528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  607 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  607 (1068)
                        +..+.+||...|+....|.+|.   +.+.++.|+|..-.+..|+.|+++++||+++.+.+......  ...|.+.+|+
T Consensus       175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn  247 (825)
T KOG0267|consen  175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN  247 (825)
T ss_pred             --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence              6789999999999999999998   89999999999888888999999999999998888777655  4579999999


Q ss_pred             cCCCEEEEEECC
Q 001490          608 KNGTLLAVIANE  619 (1068)
Q Consensus       608 ~~~~~l~~~~~d  619 (1068)
                      |++..+++|...
T Consensus       248 ~~~~~~~~G~q~  259 (825)
T KOG0267|consen  248 PDGKIVLSGEQI  259 (825)
T ss_pred             CCceeeecCchh
Confidence            999999888664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=6.3e-21  Score=205.45  Aligned_cols=243  Identities=16%  Similarity=0.236  Sum_probs=196.9

Q ss_pred             EEEEEec-CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCC-C
Q 001490          714 SRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-A  791 (1068)
Q Consensus       714 ~~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~  791 (1068)
                      ..+.|.. +.++|++++.+|.|.+||+.....                   .  .....+.  +|...+.++.|++-. .
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f~--EH~Rs~~~ldfh~tep~  147 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVFN--EHERSANKLDFHSTEPN  147 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHhh--hhccceeeeeeccCCcc
Confidence            3344442 456788889999999999875210                   0  1111122  399999999999865 5


Q ss_pred             EEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-ceeeeeecccccCeEEEE
Q 001490          792 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLV  869 (1068)
Q Consensus       792 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~  869 (1068)
                      +|++|+ ||+|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++- .++...+.+|.++|.++.
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n  227 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN  227 (839)
T ss_pred             EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence            667777 899999999999999999998899999999998899999999999999999975 457788899999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE----EeCCeEEEEECCCcee
Q 001490          870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTC  945 (1068)
Q Consensus       870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~----~~d~~i~vwd~~~~~~  945 (1068)
                      |+|++.+|||||+|++|+|||..+++.....++++.       .++..+.|-|+..+.++    ..|..|+|||++..-.
T Consensus       228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI  300 (839)
T KOG0269|consen  228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI  300 (839)
T ss_pred             ecCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeeccccc
Confidence            999999999999999999999998765554455544       36899999999877544    3678899999998877


Q ss_pred             eeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEEEEcCCC
Q 001490          946 LKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL  986 (1068)
Q Consensus       946 ~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~  986 (1068)
                      ....+..|...++.++|-. |-..|.+++.||+|..-.++++
T Consensus       301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            7777888999999999976 5678899999998876555443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.86  E-value=2.3e-20  Score=196.72  Aligned_cols=286  Identities=17%  Similarity=0.219  Sum_probs=207.3

Q ss_pred             CCCCeEEEEEcCcCcEEEEecCCCcce-eeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEE
Q 001490          320 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL  398 (1068)
Q Consensus       320 pdg~~lla~gs~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~v  398 (1068)
                      |+.+++||.+..||.|.++|.....-. ....+              .....|...|..+.|-|....|++++.|.++++
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasGDsT~r~  126 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP  126 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccCCceeee
Confidence            455679999999999999998764322 11111              114579999999999997788999999999999


Q ss_pred             EEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001490          399 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------------  452 (1068)
Q Consensus       399 wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------------------------  452 (1068)
                      ||+++++..... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||+.-..                          
T Consensus       127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            999998876643 46799999999999999886 89999999999999985322                          


Q ss_pred             -eeeEeccCCCcEEE---EeeeecCCccEEEEEEc-CCcEEEEeCCCCCceEE--------ecCC---CCcEEEEEEccC
Q 001490          453 -RTYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSAN  516 (1068)
Q Consensus       453 -~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~d  516 (1068)
                       .+.....+...|.+   +.+.  .|...|++++. |+.|+|||++.......        +..+   ...+.++.....
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             ccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence             01112234444444   2232  25568999887 99999999987654332        2222   235778888888


Q ss_pred             CCEEEEEeeCCCCceeEEEEeCCCC--eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE-EEEe
Q 001490          517 GRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTID  593 (1068)
Q Consensus       517 ~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~~  593 (1068)
                      |.+|++...    |+.|+.||+.+-  .++..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.- ..+.
T Consensus       283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~  357 (720)
T KOG0321|consen  283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL  357 (720)
T ss_pred             CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhhh
Confidence            888877665    667999999764  3445555544222222 2346899999999999999999999875543 3333


Q ss_pred             CCCCCCCCceEEEecC-CCEEEEEECCCeEEEEECCCC
Q 001490          594 AGGGLPENPRICFNKN-GTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       594 ~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      +  +...|.+++|.|. -.-++++++|.++++|++..+
T Consensus       358 G--ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  358 G--HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             C--cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            3  3456899999883 334666699999999999654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=8.4e-19  Score=184.98  Aligned_cols=175  Identities=18%  Similarity=0.257  Sum_probs=137.4

Q ss_pred             cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce
Q 001490          419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR  498 (1068)
Q Consensus       419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~  498 (1068)
                      .|..++|-|||.+++++.   +..+.+||...|..+.++++|.+.|++++++.  ||+.+++|+.|..|.+|.-......
T Consensus        14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee
Confidence            789999999999744443   44699999999999999999999999999965  8899999999999999975543332


Q ss_pred             EEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeE
Q 001490          499 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  578 (1068)
Q Consensus       499 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i  578 (1068)
                      .  -.|...|.||.|+|-...|++|+-+.     .-+|........ +.+.    ...+.+++|..||++++.|-.+|+|
T Consensus        89 k--YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~-K~ks----s~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   89 K--YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVS-KHKS----SSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             e--eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHH-hhhh----heeEEEeeecCCCcEEEEeccCceE
Confidence            2  24777899999999999999998532     667876554332 2221    2578999999999999999999999


Q ss_pred             EEEEcCCCeEEEEEeCCCCCCCCceEEEecCC
Q 001490          579 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       579 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      .|-+......+..-...+...+|.+++|+|..
T Consensus       157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s  188 (1081)
T KOG1538|consen  157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSS  188 (1081)
T ss_pred             EeecCCCCcceEEeCCCCCCCCceEEEecCCC
Confidence            99876544444443444455789999999964

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=6.8e-22  Score=211.01  Aligned_cols=239  Identities=11%  Similarity=0.206  Sum_probs=213.8

Q ss_pred             eecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC
Q 001490          304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  383 (1068)
Q Consensus       304 ~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd  383 (1068)
                      +....|...|.|+..-..++ ++++|+.|..+-+|.+..-..+..                   +.+|+.+|.++.|+++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~   81 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS   81 (825)
T ss_pred             hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence            44557888999999866665 889999999999999876555433                   7789999999999999


Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  463 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  463 (1068)
                      ..+|++|+.+|+|++||++.++.++   ++.+|...+..+.|+|-+.  +.++|+.|+.+++||++...+.+.+.+|...
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence            9999999999999999999988777   7889999999999999999  7899999999999999988899999999999


Q ss_pred             EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001490          464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  543 (1068)
Q Consensus       464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~  543 (1068)
                      |..+.|.|  +|.+++++++|.++++||+..++....+..|...+.++.|+|..-+++.|+.    +..+++||+++.+.
T Consensus       157 v~~l~lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~  230 (825)
T KOG0267|consen  157 VDVLRLSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV  230 (825)
T ss_pred             eEEEeecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence            99999966  8899999999999999999999999999999999999999999988988876    66899999999888


Q ss_pred             eeEEeccccccCCeEEEEEecCCCEEEEEECCC
Q 001490          544 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  576 (1068)
Q Consensus       544 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg  576 (1068)
                      +.......   ..|.+..|+|++..+++|....
T Consensus       231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence            87777665   8899999999999888876543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=1.2e-19  Score=181.51  Aligned_cols=308  Identities=15%  Similarity=0.167  Sum_probs=220.2

Q ss_pred             ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCC
Q 001490          305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  384 (1068)
Q Consensus       305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg  384 (1068)
                      .++.|+ +|..+.|.+++...+|||+.|..|+||-++.++.-..-          ....-...|..|...|+++.|+|+|
T Consensus         9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen    9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence            345665 99999999988757899999999999999765543210          0011122388899999999999999


Q ss_pred             CEEEEEeCCcEEEEEEcc--------C-----CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          385 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      ..||+|+.+|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++-|..+++||+..|
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence            999999999999999876        3     222233446788999999999999999  8999999999999999999


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec-------------------CCC----CcE
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC  508 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i  508 (1068)
                      ..+..+..|...+..++|.|  -++++++-+.|...+.+.+...+......                   .|.    .-.
T Consensus       156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence            99999999999999999976  45788888888766666554333221110                   001    124


Q ss_pred             EEEEEccCCCEEEEEeeC----CC-CceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecC-----------------
Q 001490          509 TRMAYSANGRRLFSCGTS----KE-GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA-----------------  565 (1068)
Q Consensus       509 ~~~~~s~d~~~l~~~~~~----~~-~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-----------------  565 (1068)
                      ..++|+|||.++++....    +. ..+..++++-.. .++...+.+..   .....+.|+|-                 
T Consensus       234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp  310 (434)
T KOG1009|consen  234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP  310 (434)
T ss_pred             hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence            568999999999875431    11 023345554331 22233333333   44555555541                 


Q ss_pred             CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCc
Q 001490          566 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  631 (1068)
Q Consensus       566 ~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  631 (1068)
                      -+.+++....+.|++||.++..++.....- +...++.++|++||..+++.+.||...+...+..+
T Consensus       311 yrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             cceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            123344444567999999998888776532 23568999999999999999999998887776543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1e-19  Score=176.80  Aligned_cols=294  Identities=15%  Similarity=0.263  Sum_probs=213.4

Q ss_pred             ecccCCCCceEEEEcC----CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          305 TLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       305 ~l~~h~~~V~~v~~sp----dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .+.+|+.+|..++|.+    +...++|+.+. ..+.||.....--++.              ++...-..|...-..++|
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcsw   97 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCSW   97 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEEE
Confidence            3457888999999983    33346666655 6899999865332211              111112347788889999


Q ss_pred             CCC----CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          381 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       381 spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      +-|    .-+||+|+.-|.|+|.|+.+++...   .+.+|.+.|+.+.|.|+..+ ++++++.|..|++||+++..++..
T Consensus        98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~V  173 (385)
T KOG1034|consen   98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAV  173 (385)
T ss_pred             EecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEE
Confidence            875    3478999999999999999988766   67799999999999999877 899999999999999999999987


Q ss_pred             e---ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE------e----------------------cCCC
Q 001490          457 F---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------Y----------------------DAPG  505 (1068)
Q Consensus       457 ~---~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------~----------------------~~~~  505 (1068)
                      |   .||.+.|.++.|+.  +|.++++++.|.++++|++...+....      +                      ..|.
T Consensus       174 fGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr  251 (385)
T KOG1034|consen  174 FGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR  251 (385)
T ss_pred             ecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc
Confidence            7   57999999999976  667999999999999999873321110      0                      0111


Q ss_pred             CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC-CCCee-------------eeEEeccccccCCeEEEEE--ecCCCEE
Q 001490          506 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVVHF--DTAKDQI  569 (1068)
Q Consensus       506 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~~~v~~~~~--~~~~~~l  569 (1068)
                      ..|.|+.|-  |.++++-+.    ++.|..|.. +-++.             +..+.-.   ...|.-+.|  .|-++.|
T Consensus       252 nyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  252 NYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             chHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHHH
Confidence            122222222  456666543    667999987 21211             1222222   255555554  5668899


Q ss_pred             EEEECCCeEEEEEcCCCeE--EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490          570 LAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       570 ~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      +.|...|.|++||++...+  ..++........|...+|+.||..|+..++|++|.-||..
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999999987665  2344444444568999999999999999999999999854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=8.2e-20  Score=192.63  Aligned_cols=287  Identities=16%  Similarity=0.139  Sum_probs=202.5

Q ss_pred             ceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001490          723 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI  801 (1068)
Q Consensus       723 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i  801 (1068)
                      ..|+.+..+|.|.++|.......               ++... +..    ...|...|..+.+-|....|++++ |.++
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence            44666677899999986543221               11000 111    114899999999999667777776 7889


Q ss_pred             EEEEccCceeEEE--ecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce--------------------------
Q 001490          802 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------------  853 (1068)
Q Consensus       802 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------------  853 (1068)
                      ++||+++.+++..  +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..                          
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999988877  889999999999999888999999999999999985321                          


Q ss_pred             -eeeeecccccCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCceeeee-ee--ecCCCcccCCCCceEEEEeeCCC
Q 001490          854 -VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SL--QTPDGVMTLAPSETHIQFHKDQT  925 (1068)
Q Consensus       854 -~~~~~~~h~~~V~~---l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~spdg~  925 (1068)
                       .+....+|...|.+   +.+..|...||++|. |+.|+|||+......... ..  .....+..-...+.++.....|.
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence             12223345566666   666678899999988 999999999875432211 11  11111111113567777777788


Q ss_pred             EEEE-EeCCeEEEEECCCceeee-eeccCCC--cCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCC
Q 001490          926 RFLL-VHETHLAIYEAEELTCLK-QWFPISS--VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1001 (1068)
Q Consensus       926 ~la~-~~d~~i~vwd~~~~~~~~-~~~~~h~--~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1001 (1068)
                      +|.+ +.|+.|+.|++.+-..-. ..+.++.  .--..-..|||+.+|++|+.|...++|.+.+-+.-    +...+.+ 
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~----~~~l~Gh-  359 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP----PALLLGH-  359 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC----hhhhhCc-
Confidence            8877 899999999998644322 1123331  11123346899999999999999999999987654    2222333 


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490         1002 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus      1002 ~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
                          .+.+.+++|.|.+-.-++|+++|.++.+|++..
T Consensus       360 ----t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  360 ----TREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             ----ceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence                366678888886667789999999999999954

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.9e-19  Score=172.14  Aligned_cols=257  Identities=13%  Similarity=0.178  Sum_probs=191.7

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCC-cccceEEEccccccEEEEEEcCC--CCcEEEEEEeCCCcEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  444 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~~~~h~~~v~~l~~s~d--~~~~~l~s~~~d~~i~  444 (1068)
                      -.+|.+-|.++.|.+-|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+-  |+  .+++++.|+++.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence            45799999999999999999999999999999964433 34444467789999999999654  66  899999999999


Q ss_pred             EEECCC------C---ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE------ec-------
Q 001490          445 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------YD-------  502 (1068)
Q Consensus       445 iwd~~~------~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------~~-------  502 (1068)
                      ||.-..      |   ....++......|+.++|.|..-|-.|++++.||.+|+|+.........      +.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421      1   1235666778899999999999999999999999999998654332221      11       


Q ss_pred             CCCCcEEEEEEcc---CCCEEEEEeeCC-CCceeEEEEeCCCCe----eeeEEeccccccCCeEEEEEecCC----CEEE
Q 001490          503 APGLGCTRMAYSA---NGRRLFSCGTSK-EGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK----DQIL  570 (1068)
Q Consensus       503 ~~~~~i~~~~~s~---d~~~l~~~~~~~-~~~~~i~~wd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~----~~l~  570 (1068)
                      .+..+..|+.|+|   ...+|++++.+. ...+.++||....+.    .+.++.++.   .+|+.++|.|+-    ..|+
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence            2334678899987   345777776431 122356777654332    344556666   999999999973    4678


Q ss_pred             EEECCCeEEEEEcCCCe-----------------EEEEEe-CCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          571 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       571 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      +++.|| |+||++....                 .+..+. ..+|...|..+.|+-.|..|++.++||.|++|...-.
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence            899999 9999987311                 122222 3344557999999999999999999999999986643

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.5e-19  Score=183.10  Aligned_cols=251  Identities=15%  Similarity=0.178  Sum_probs=193.1

Q ss_pred             eEEEEECC-------CCCEEEEEeCCcEEEEEEccCCCcccceEE------------------EccccccEEEEEEcCCC
Q 001490          375 VNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLE------------------IDAHVGNVNDLAFSAPC  429 (1068)
Q Consensus       375 V~~~~~sp-------dg~~las~~~d~~i~vwd~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~d~  429 (1068)
                      ..|++|..       -|+|+|.|+.|..|.|||+.-...+.+...                  -.+|+..|.+++|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            34666643       378999999999999999864333222222                  23799999999999887


Q ss_pred             CcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEE
Q 001490          430 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT  509 (1068)
Q Consensus       430 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~  509 (1068)
                      +. +|++||.|.+|++||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|.
T Consensus       256 ~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VE  333 (463)
T KOG0270|consen  256 RN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVE  333 (463)
T ss_pred             ce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceE
Confidence            76 8999999999999999999999999999999999999986 567999999999999999985333322222345788


Q ss_pred             EEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCe
Q 001490          510 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  587 (1068)
Q Consensus       510 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~  587 (1068)
                      .++|.|.....+.++.   .+|+|+-+|++.. +++.+++.|.   +.|.++++++... .+.+++.|+.|++|++....
T Consensus       334 kv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             EEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence            9999998776666653   2788999999864 8899999988   8999999988654 56679999999999987644


Q ss_pred             EEEEEeCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEECCCCcee
Q 001490          588 LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSV  633 (1068)
Q Consensus       588 ~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~  633 (1068)
                      ........-......|.++.|+- -.++.|+..+.+++||+.+...+
T Consensus       408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            43222211122234566777754 46778888889999999877544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2.7e-20  Score=200.72  Aligned_cols=286  Identities=15%  Similarity=0.252  Sum_probs=217.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccc-eEEEcc---ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490          373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  448 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~-~~~~~~---h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~  448 (1068)
                      ....+|+..++-..++.++.. .+.||.+........ ...+..   -...+..+.|..-... +|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence            456677788888888877544 578887765432111 111111   1124567788754444 8999999999999999


Q ss_pred             CC---CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCEEEEEe
Q 001490          449 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG  524 (1068)
Q Consensus       449 ~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~  524 (1068)
                      ..   .+.+..|..|...+.+++|++. ...+|++||.||+|++||++.......+......|+.+.|+| .+..++++.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            87   5667788999999999999976 346999999999999999999999999988888999999999 556677766


Q ss_pred             eCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490          525 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                      .    .|.+.+||++.. ++...+..|.   ++|.++.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++..
T Consensus       197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r  268 (839)
T KOG0269|consen  197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR  268 (839)
T ss_pred             C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence            4    668999999864 4556677777   999999999999999999999999999998765443333222 356899


Q ss_pred             EEEecCCC-EEEEEEC--CCeEEEEECCCC-ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCccccee
Q 001490          604 ICFNKNGT-LLAVIAN--ENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  679 (1068)
Q Consensus       604 v~~s~~~~-~l~~~~~--dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  679 (1068)
                      |.|-|+.. +||+++.  |..|+|||+... -+...+..|...++.++|.                     +.|...+.+
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s  327 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS  327 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence            99999654 5665543  789999999865 4556777888888888886                     345666788


Q ss_pred             ecccccceeec
Q 001490          680 VEAENKSEVEK  690 (1068)
Q Consensus       680 ~~~d~~i~~wd  690 (1068)
                      ++.|+++..-.
T Consensus       328 ~sKD~tv~qh~  338 (839)
T KOG0269|consen  328 CSKDGTVLQHL  338 (839)
T ss_pred             ecCccHHHHhh
Confidence            88888765433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5.2e-19  Score=170.46  Aligned_cols=268  Identities=13%  Similarity=0.201  Sum_probs=193.0

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--CC
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  384 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--dg  384 (1068)
                      .+|.+-|.++.|.+-|+++ |+|+.|++|+|||.+...-.-.       .        ....+.|.+.|..+.|.+  -|
T Consensus        10 s~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~W~-------~--------Ts~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGTWS-------C--------TSSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCceE-------E--------eeeEEecCCcEEEEEecCcccc
Confidence            4899999999999999965 9999999999999754432211       1        112567999999999976  49


Q ss_pred             CEEEEEeCCcEEEEEEccCC------CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCce-----
Q 001490          385 SLLGVAYSKHIVQLYAYHGG------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-----  453 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~~~------~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-----  453 (1068)
                      +.+|+++.|+++.||.-...      ..-....++......|+++.|.|....+.+++++.||.++||+.-..--     
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            99999999999999976311      1112233566677899999999998777999999999999998654322     


Q ss_pred             -eeEec-------cCCCcEEEEeeeecCCc-cEEEEEEcC-----CcEEEEeCCCCCce----EEecCCCCcEEEEEEcc
Q 001490          454 -TYSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA  515 (1068)
Q Consensus       454 -~~~~~-------~h~~~v~~i~~~~~~~~-~~l~s~s~d-----g~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~  515 (1068)
                       .+.++       .+..+..++.|+++.-. .+|+.|+.+     +.++||........    ..+..+..+|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence             22332       35667778888764332 466666655     47899987665532    35667888999999999


Q ss_pred             CC----CEEEEEeeCCCCceeEEEEeCCCCe-----------------eeeEEeccccccCCeEEEEEecCCCEEEEEEC
Q 001490          516 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  574 (1068)
Q Consensus       516 d~----~~l~~~~~~~~~~~~i~~wd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~  574 (1068)
                      +-    ..|++++.    +| |+||.+....                 .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus       234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            53    35666653    44 9999887311                 12233333334499999999999999999999


Q ss_pred             CCeEEEEEcCC---CeEEEEEeCC
Q 001490          575 DHVIKIWDMNK---VQLLTTIDAG  595 (1068)
Q Consensus       575 dg~i~iwd~~~---~~~~~~~~~~  595 (1068)
                      ||.|++|...-   .++...+...
T Consensus       309 DG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  309 DGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             CceeeehhhhhhhhheeeeEEecc
Confidence            99999997653   3344455444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=1.3e-16  Score=184.80  Aligned_cols=373  Identities=24%  Similarity=0.393  Sum_probs=285.5

Q ss_pred             EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccCCC-cEEEEeeeecCCcc-EEEEEEc-CCcE
Q 001490          412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKI  487 (1068)
Q Consensus       412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~s~-dg~i  487 (1068)
                      .+..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence            3457899999999999999  78888899999999998887 6677766443 77777775 55665 5555444 9999


Q ss_pred             EEEeCCC-CCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC
Q 001490          488 KAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  566 (1068)
Q Consensus       488 ~vwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  566 (1068)
                      .+|+... ......+..+...+..++|+|+++.+++++.   .++.+++|+...+..+..+.+|.   ..+.+++|+|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~  210 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDG  210 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCc
Confidence            9999998 7777888889999999999999998877753   36789999999988888888877   899999999999


Q ss_pred             C-EEEEEECCCeEEEEEcCCCeEEE-EEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce-eeeccccccce
Q 001490          567 D-QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNL  643 (1068)
Q Consensus       567 ~-~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i  643 (1068)
                      . .+++++.|+.|++||...+..+. .+..+...  . ...|++++..+++++.|+.+++|+...... +...       
T Consensus       211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------  280 (466)
T COG2319         211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------  280 (466)
T ss_pred             ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence            8 44445899999999998777777 56555432  2 228999998999999999999999886532 1110       


Q ss_pred             eeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCc
Q 001490          644 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ  723 (1068)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  723 (1068)
                                                                                     ..|...+.++.+.|++.
T Consensus       281 ---------------------------------------------------------------~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         281 ---------------------------------------------------------------SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             ---------------------------------------------------------------ecCCccEEEEEECCCCC
Confidence                                                                           11456777888888888


Q ss_pred             eEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeE
Q 001490          724 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVI  801 (1068)
Q Consensus       724 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--~dg~i  801 (1068)
                      .+++++.++.+.+|+......                      .....  ...|...+..+.+.+++..++.+  .++.+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence            888888888888886543321                      11110  11255578888884343566666  36889


Q ss_pred             EEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEE-EECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEE
Q 001490          802 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS  880 (1068)
Q Consensus       802 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~  880 (1068)
                      .+|+.............. .+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..++++
T Consensus       354 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (466)
T COG2319         354 RLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG  430 (466)
T ss_pred             EeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence            999998877333333222 288999998 7 55554 8899999999999988777766554779999999999999999


Q ss_pred             eCCCcEEEEECCC
Q 001490          881 GGDAQIFVWDVDG  893 (1068)
Q Consensus       881 s~dg~i~iwd~~~  893 (1068)
                      +.++.+++|+...
T Consensus       431 ~~~~~~~~~~~~~  443 (466)
T COG2319         431 SSDNTIRLWDLKT  443 (466)
T ss_pred             cCCCcEEEEeccC
Confidence            9999999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=5e-17  Score=188.31  Aligned_cols=371  Identities=23%  Similarity=0.349  Sum_probs=274.4

Q ss_pred             ecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCc-ceeeeeeeeeeccccccceeeeeecCCC-cceEEEEE-C
Q 001490          305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S  381 (1068)
Q Consensus       305 ~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~-s  381 (1068)
                      .+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. .+..                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            4578889999999999998 66888889999999998886 3322                   22322 36777777 8


Q ss_pred             CCCC-EEEEEeC-CcEEEEEEccC-CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-CCcEEEEECCCCceeeEe
Q 001490          382 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       382 pdg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~  457 (1068)
                      +++. +++..+. |+.+.+||..+ ....   ..+..|...|..++|+|+++  .+++++. |+.+++|++.++..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 89999999987 4323   36778999999999999999  6777775 999999999999999999


Q ss_pred             ccCCCcEEEEeeeecCCcc-EEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          458 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      .+|...|.++++.+  ++. .+++++.|+.|++||........ .+..+.... ...|++++.++++++.    ++.+++
T Consensus       195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~  267 (466)
T COG2319         195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL  267 (466)
T ss_pred             ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence            99999999999984  555 55555999999999888666665 466666654 3389999988886664    667999


Q ss_pred             EeCCCCee-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          536 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       536 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      |+...... ...+.+|.   ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.+.+++..++
T Consensus       268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence            99987664 44444444   889999999988899988888999999998887776665112222478888843435666


Q ss_pred             EE-ECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccce-eecccccceeeccc
Q 001490          615 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL  692 (1068)
Q Consensus       615 ~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~  692 (1068)
                      .+ ..|+.+.+|+............... +..+.+.                      ++ .... .+..++.+.+|+..
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~  400 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS  400 (466)
T ss_pred             EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence            65 6788999999988762222222211 4445554                      22 2223 36778899999976


Q ss_pred             ccCCcccceeecCCcccc-ccEEEEEEecCCceEEEeecCccEEEEeccC
Q 001490          693 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR  741 (1068)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~  741 (1068)
                      .........       .. ..+....+++++..++.++.++.+++|+...
T Consensus       401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            433222111       11 6788999999999999988899999998643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=3e-19  Score=173.56  Aligned_cols=298  Identities=15%  Similarity=0.214  Sum_probs=208.3

Q ss_pred             ccccEEEEEEec----CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490          709 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  784 (1068)
Q Consensus       709 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  784 (1068)
                      |..+|..++|.+    +...+++......+.+|+.+...                    +.++..... ...+......+
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~-D~d~~Esfytc   95 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYA-DEDHDESFYTC   95 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeecc-CCCCCcceEEE
Confidence            667788888874    33445566666688888765421                    122222222 11356666777


Q ss_pred             EEecCC----CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-
Q 001490          785 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-  858 (1068)
Q Consensus       785 ~~s~dg----~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-  858 (1068)
                      +++-|-    .++|+++ -|.|+|.|..++++...+.+|...|+.+.+.|+..++|++++.|.+|++|++++..++..+ 
T Consensus        96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen   96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            777643    3666666 6999999999999999999999999999999987899999999999999999999998887 


Q ss_pred             --cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee-------------eeeeecCCCccc-------CCCCce
Q 001490          859 --EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET  916 (1068)
Q Consensus       859 --~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~  916 (1068)
                        .||.+.|.++.|+++|.+++++|.|.++++|++...+...             .+.+.....+..       +...|.
T Consensus       176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence              4699999999999999999999999999999998543211             011111111111       111233


Q ss_pred             EEEEeeCCCEEEE-EeCCeEEEEEC-CCceeeeee------------ccCCCcCEEEEEEe--cCCCEEEEEECCCcEEE
Q 001490          917 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       917 ~~~~spdg~~la~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~~~dg~v~v  980 (1068)
                      |+.|-  |.++++ +.++.|..|.. +-++.+...            +.-....|+-+.|+  +-+++||.|...|.|++
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            33332  577787 78889999998 222221111            11225566666655  55789999999999999


Q ss_pred             EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490          981 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus       981 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
                      ||++..+....    ..+.++..+..++  ..+|+- |+.+|+...+|+.|.-||.
T Consensus       334 wdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  334 WDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence            99998877511    1222222334444  456666 7899999999999999985

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.1e-17  Score=179.95  Aligned_cols=605  Identities=12%  Similarity=0.111  Sum_probs=359.0

Q ss_pred             CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC------C
Q 001490          311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------G  384 (1068)
Q Consensus       311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd------g  384 (1068)
                      ..-.++.|+|.|  |+|.|+. ..|.+-|..+-+.+..                   +.-|...|+.+.|.|-      +
T Consensus        16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll   73 (1062)
T KOG1912|consen   16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL   73 (1062)
T ss_pred             ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence            356789999998  6788876 6799999998888765                   5668999999999873      1


Q ss_pred             ------CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC---CCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490          385 ------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       385 ------~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                            -+||++...|.|.+||...+..+.   .+..|..++..++|-+   +.+. +|+.-....+|.+||..+|+...
T Consensus        74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W  149 (1062)
T KOG1912|consen   74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW  149 (1062)
T ss_pred             CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence                  257888888999999999876554   5678889999999864   3434 56666668899999999999988


Q ss_pred             EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC------ceEEec-CCCC----------------------
Q 001490          456 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYD-APGL----------------------  506 (1068)
Q Consensus       456 ~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~------~~~~~~-~~~~----------------------  506 (1068)
                      ..........++.+.|- |.+.+..-+..|.+.+-+.-...      ....+. .+..                      
T Consensus       150 k~~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~  228 (1062)
T KOG1912|consen  150 KYDYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY  228 (1062)
T ss_pred             ccccCCcceeeeeeCCC-CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence            87766666777777665 33455555556666555432111      111111 1100                      


Q ss_pred             ---cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC--CCEEEEEECCCeEEEE
Q 001490          507 ---GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIW  581 (1068)
Q Consensus       507 ---~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iw  581 (1068)
                         -...++|+|.-+.++.....+    -+.++|++-..++....-..   +.+.-+.+-|+  ...+++.-.||.+.+|
T Consensus       229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltir  301 (1062)
T KOG1912|consen  229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIR  301 (1062)
T ss_pred             HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEE
Confidence               012356788665554444433    39999998888877776655   55556666665  4578999999999999


Q ss_pred             EcCC----------------CeEEEEEeCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEECCCCceeeecc-------
Q 001490          582 DMNK----------------VQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG-------  637 (1068)
Q Consensus       582 d~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------  637 (1068)
                      -.+.                +.....+..-.... ....+..|. ...+++-..+|...+|.+.+++......       
T Consensus       302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~  380 (1062)
T KOG1912|consen  302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV  380 (1062)
T ss_pred             EeeccCccccccchhhccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence            7654                22222221111111 122333443 4556666677888899888653221111       


Q ss_pred             ------------------------ccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccc
Q 001490          638 ------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  693 (1068)
Q Consensus       638 ------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~  693 (1068)
                                              +|.....+....|.....-.....    ........-.+++.|...|+|.+.|+.+
T Consensus       381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvst  456 (1062)
T KOG1912|consen  381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVST  456 (1062)
T ss_pred             ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEecc
Confidence                                    111111122111111110000000    0000011234678899999999999876


Q ss_pred             cCCcccceeecCCccccccEEEEEEecCCceEEEeecC--ccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeec
Q 001490          694 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND  771 (1068)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  771 (1068)
                      +........      |...|.++.|......+-.+...  ....++               ...+.+-+..+|.......
T Consensus       457 ~~v~~~fsv------ht~~VkgleW~g~sslvSfsys~~n~~sg~v---------------rN~l~vtdLrtGlsk~fR~  515 (1062)
T KOG1912|consen  457 NAVAASFSV------HTSLVKGLEWLGNSSLVSFSYSHVNSASGGV---------------RNDLVVTDLRTGLSKRFRG  515 (1062)
T ss_pred             hhhhhhhcc------cccceeeeeeccceeEEEeeeccccccccce---------------eeeEEEEEccccccccccc
Confidence            554443333      88899999998877644333221  100000               0134455666776444333


Q ss_pred             CCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEe-CC---------------CCCE
Q 001490          772 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNV  834 (1068)
Q Consensus       772 ~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~  834 (1068)
                      +++ ..+.+|+.+..|.-|+||+..- +.-+.+||+++..+++.....-.-|+.+.|+ |.               ..+.
T Consensus       516 l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~  594 (1062)
T KOG1912|consen  516 LQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENL  594 (1062)
T ss_pred             CCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhce
Confidence            332 4678999999999999999998 6779999998877766555444458888888 31               1123


Q ss_pred             EEEEECCCeEEEEEcCC-------ceee-eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCC
Q 001490          835 IAIGMDDSTILIYNARS-------SEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD  906 (1068)
Q Consensus       835 lasg~~dg~v~iwd~~~-------~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~  906 (1068)
                      ++..+  +..+++.+.-       +..+ ...+...-.+..++|  .+..|+.|..+|.+.+||+........+-..   
T Consensus       595 vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p---  667 (1062)
T KOG1912|consen  595 VVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSP---  667 (1062)
T ss_pred             eeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCC---
Confidence            33333  2233333321       1111 111111123344666  4678999999999999998764321111111   


Q ss_pred             CcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCc--CEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490          907 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       907 ~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~t~~~dg~v~vwd~~  984 (1068)
                      .+.   .......+-|....+++-...-+-+||.+....+..+ .+...  ++..+.+......++  ..|.++++-.+.
T Consensus       668 ~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~  741 (1062)
T KOG1912|consen  668 DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMP  741 (1062)
T ss_pred             Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEecc
Confidence            111   1223334445433444445556889999888877765 34333  344444444444444  345588877766


Q ss_pred             CCcEE
Q 001490          985 NLEVQ  989 (1068)
Q Consensus       985 ~~~~~  989 (1068)
                      .....
T Consensus       742 mks~~  746 (1062)
T KOG1912|consen  742 MKSPP  746 (1062)
T ss_pred             ccCCc
Confidence            55443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.83  E-value=7.6e-19  Score=170.44  Aligned_cols=409  Identities=10%  Similarity=0.108  Sum_probs=258.2

Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      -+.|||+|+|+|+++.- .+.|-|.++-+..+.    -.--+.|..+.|..|..+ .+.....|+.|.+|++...+--..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            47899999999999765 688888887553321    122457889999999885 566678899999999998888888


Q ss_pred             eccCCCcEEEEeeeecCCc-cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          457 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       457 ~~~h~~~v~~i~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      +.....++.+++|+|  || ..|.+..-+-+|.+|.+.+....... -....+..++|+|||++.+.++. +|....+.+
T Consensus        87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i  162 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQI  162 (447)
T ss_pred             eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCceeeeeec-ccHHHHHHH
Confidence            888889999999977  66 56677778999999999887665433 23335688999999999998874 222233333


Q ss_pred             EeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEE
Q 001490          536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  615 (1068)
Q Consensus       536 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  615 (1068)
                      .....-..++.+....   ...+.+.|+|||+.+++         ||---.-.+.....   .-++..++|+|.+++|++
T Consensus       163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~---~lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee---ccceeEEEeccccceEEe
Confidence            3333344455555555   66788999999987765         44221111111111   124788999999999999


Q ss_pred             EECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccC
Q 001490          616 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  695 (1068)
Q Consensus       616 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  695 (1068)
                      |+.|+.+++.+--+-+.+..+- |...+                                      .|-+..+-..++.+
T Consensus       228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS  268 (447)
T ss_pred             eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence            9999999997654433322211 00000                                      00010000000000


Q ss_pred             CcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCC
Q 001490          696 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  775 (1068)
Q Consensus       696 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  775 (1068)
                      .            -.-...++.|.|..-         ...+|.............   ..+..-.+.+       +.  +
T Consensus       269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p---v~~~~lkp~t-------D~--p  315 (447)
T KOG4497|consen  269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP---VKVHKLKPPT-------DF--P  315 (447)
T ss_pred             h------------hhhcccccccCCCcc---------ccCccccchhhhhhhhcc---eeeecccCCC-------CC--C
Confidence            0            000122333443321         011111100000000000   0000001111       11  1


Q ss_pred             CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc
Q 001490          776 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  852 (1068)
Q Consensus       776 ~~~~~v~~l~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  852 (1068)
                      +..-.+.-++||+|..|+++-.|   +.+.+||+...+....+. ...+|.+..|.| +...|+.+.....+++|.....
T Consensus       316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence            23456778999999999999985   569999998776654443 456899999999 7778887877788999988754


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeCCCc
Q 001490          853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ  885 (1068)
Q Consensus       853 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~  885 (1068)
                      ..+.. .+..-.|..+.|.-+|..++..+.|..
T Consensus       394 ~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  394 RVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            44433 333367999999999999999998874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=7.1e-19  Score=178.62  Aligned_cols=311  Identities=13%  Similarity=0.114  Sum_probs=225.7

Q ss_pred             ECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecC
Q 001490          626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  705 (1068)
Q Consensus       626 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  705 (1068)
                      ++.+.......+.+.++|.+++|+|.                    .+.+++++|+..|.|-+||+.+.++.......+.
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~  231 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT  231 (498)
T ss_pred             ccccceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec
Confidence            33444455566677888999999973                    4567899999999999999975555544444444


Q ss_pred             CccccccEEEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490          706 SKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  784 (1068)
Q Consensus       706 ~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  784 (1068)
                      .  |..+|.++.|+|. -..+++.+.||++++-|+......           .++...             .....+..+
T Consensus       232 ~--hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~v~s~~-------------~d~~~fs~~  285 (498)
T KOG4328|consen  232 P--HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------EVLSLD-------------TDNIWFSSL  285 (498)
T ss_pred             c--CCccccceEecCCChhheeeeccCceeeeeeecchhhH-----------HHhhcC-------------ccceeeeec
Confidence            4  8899999999986 456888999999999887654220           001100             134556778


Q ss_pred             EEecCCCEEEEEeC-CeEEEEEccCcee-EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce----eeeee
Q 001490          785 ALSKNDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKL  858 (1068)
Q Consensus       785 ~~s~dg~~l~~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~~  858 (1068)
                      .|+.+...++.+.+ |...+||..+... ...+.-|...|+.+++.|-...+||+++.|++.+|||+..-.    ++...
T Consensus       286 d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst  365 (498)
T KOG4328|consen  286 DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST  365 (498)
T ss_pred             cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec
Confidence            88888888888875 8999999987654 666777888999999999888899999999999999997632    22334


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeee-eeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCC
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET  933 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~---~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~  933 (1068)
                      ..|...|.+..|||+|..|++.+.|..|+|||..   ..-.... .......+..-   .....+|.||..+++++ .-.
T Consensus       366 ~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r  442 (498)
T KOG4328|consen  366 LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPR  442 (498)
T ss_pred             ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccc---cchhheeCCCccEEEEeccCc
Confidence            4599999999999999889999999999999984   2111111 11111111111   34567899999999996 567


Q ss_pred             eEEEEECCCceeeeeeccCCCcCEEE-EEEecCCCEEEEE-ECCCcEEEEEcCC
Q 001490          934 HLAIYEAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTS-FVDGTLSIHEASN  985 (1068)
Q Consensus       934 ~i~vwd~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~-~~dg~v~vwd~~~  985 (1068)
                      .|-|+|...++.+.++.......|.+ ..|.|-+..+++| +..|.|+||.-..
T Consensus       443 ~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  443 PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence            79999999999888765554545554 4688877645544 4567888886554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.2e-20  Score=208.90  Aligned_cols=296  Identities=16%  Similarity=0.258  Sum_probs=226.4

Q ss_pred             ceEEEEcCCCCeEEEEEcCc----------CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490          313 PMSMDFHPVQHTLLLVGTNV----------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       313 V~~v~~spdg~~lla~gs~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp  382 (1068)
                      -..++|||++..++|+|...          .++.||.+.-....              ..++...--.-..+-+.++|.+
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~--------------~dlk~~~s~~s~~rF~kL~W~~   74 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES--------------SDLKPVGSLQSSNRFNKLAWGS   74 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc--------------ccccccccccccccceeeeecc
Confidence            45689999998677877542          33444444211111              0000000111245788999999


Q ss_pred             CCCE----EEEEeCCcEEEEEEccC---CCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490          383 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       383 dg~~----las~~~d~~i~vwd~~~---~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                      .|..    ||.|..||.|.+||...   +.....+.....|.+.|..+.|++.... +|++|+.||.|.|||+..-+...
T Consensus        75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~  153 (1049)
T KOG0307|consen   75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF  153 (1049)
T ss_pred             cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence            8776    88889999999999876   3434444467789999999999999776 89999999999999998765554


Q ss_pred             Eec--cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC--cEEEEEEccCCCE-EEEEeeCCCCc
Q 001490          456 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE  530 (1068)
Q Consensus       456 ~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~-l~~~~~~~~~~  530 (1068)
                      +..  ...+.|.+++|+.. ..+.|++++.+|++.|||++..+.+..+..+..  .+..++|+|+... +++++ +.+..
T Consensus       154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~  231 (1049)
T KOG0307|consen  154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA  231 (1049)
T ss_pred             CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence            442  24577899998744 557899999999999999999988877766654  5788999998754 44444 45568


Q ss_pred             eeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          531 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       531 ~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      -.|.+||++. ...++++++|.   ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+  ..+..+.|+|
T Consensus       232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p  306 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP  306 (1049)
T ss_pred             ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence            8999999875 45677888888   899999999987 788889999999999999999999998643  4688999999


Q ss_pred             CC-CEEEEEECCCeEEEEECCCC
Q 001490          609 NG-TLLAVIANENRIKILETPES  630 (1068)
Q Consensus       609 ~~-~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      .. ..+++++-||.|.|+.+...
T Consensus       307 r~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  307 RNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCcchhhhheeccceeeeeeecC
Confidence            54 48999999999999998865

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=8.5e-19  Score=179.05  Aligned_cols=294  Identities=15%  Similarity=0.205  Sum_probs=214.3

Q ss_pred             EEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEECCCCceeeeccccccceeeeEE
Q 001490          570 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV  648 (1068)
Q Consensus       570 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  648 (1068)
                      ..++....+++||.........+..+...+.+.++.|+.... .+++.+.|..+++|.-... . .              
T Consensus         6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~-~--------------   69 (673)
T KOG4378|consen    6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T-P--------------   69 (673)
T ss_pred             eeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-C-C--------------
Confidence            344444579999998877776666666666789999988664 2333445778888865432 0 0              


Q ss_pred             cCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEe
Q 001490          649 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  728 (1068)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  728 (1068)
                                                          +|-+-...                ....-.|++......+++++
T Consensus        70 ------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~sg   97 (673)
T KOG4378|consen   70 ------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEISG   97 (673)
T ss_pred             ------------------------------------ccceeecc----------------ccchHHHHhhhhcceeeecc
Confidence                                                00000000                01112233334445789999


Q ss_pred             ecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 001490          729 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVM  807 (1068)
Q Consensus       729 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~  807 (1068)
                      +..+.|+|||+...                        +....+.  +|...|+++.+.-...|||++++ |.|.|..+.
T Consensus        98 G~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~  151 (673)
T KOG4378|consen   98 GQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK  151 (673)
T ss_pred             CcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEecc
Confidence            99999999987632                        1111122  48899999999999999999995 889999999


Q ss_pred             CceeEEEecCCCC-CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-cccccCeEEEEEcCCC-CEEEEEeCCC
Q 001490          808 TFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGGDA  884 (1068)
Q Consensus       808 ~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg-~~l~s~s~dg  884 (1068)
                      ++....+|....+ .+.-+.|+|....+|.+++++|.|.+||+....+...+ +.|..+...|+|+|.. .+||+.|.|.
T Consensus       152 t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk  231 (673)
T KOG4378|consen  152 TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK  231 (673)
T ss_pred             cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence            9988888876544 55689999955667788999999999999987766544 5699999999999964 6788999999


Q ss_pred             cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEe
Q 001490          885 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFS  963 (1068)
Q Consensus       885 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs  963 (1068)
                      .|.+||+...........         ..+...++|+++|.+|++| ..|.|..||++..+........|...|++++|-
T Consensus       232 ki~~yD~~s~~s~~~l~y---------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  232 KINIYDIRSQASTDRLTY---------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             eEEEeecccccccceeee---------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence            999999986442221111         1368899999999999995 778999999997766555577899999999998


Q ss_pred             cCC
Q 001490          964 CDC  966 (1068)
Q Consensus       964 ~dg  966 (1068)
                      +.-
T Consensus       303 ~s~  305 (673)
T KOG4378|consen  303 PSP  305 (673)
T ss_pred             ecc
Confidence            764

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=7.9e-19  Score=179.28  Aligned_cols=288  Identities=14%  Similarity=0.175  Sum_probs=218.0

Q ss_pred             CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE--eCCcEEEEEEccCCCc-ccc
Q 001490          333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSD-ARQ  409 (1068)
Q Consensus       333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~--~~d~~i~vwd~~~~~~-~~~  409 (1068)
                      ..++|||+..-+....+.                 -......+.++.|+.... |+++  +.|..+++|.-..... +..
T Consensus        12 d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~   73 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPR   73 (673)
T ss_pred             CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccce
Confidence            679999997655443211                 001123488999988664 4444  5677899997654311 111


Q ss_pred             eEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEE
Q 001490          410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA  489 (1068)
Q Consensus       410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~v  489 (1068)
                      .....+.  .-.|++......  ++++||..+.|+|||++...+.+.+++|...|+++.+..  ...+|++++..|.|.+
T Consensus        74 ~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   74 VRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIII  147 (673)
T ss_pred             eeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEE
Confidence            1122222  334444444444  899999999999999998878888999999999999865  5579999999999999


Q ss_pred             EeCCCCCceEEecCCC-CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCE
Q 001490          490 WLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  568 (1068)
Q Consensus       490 wd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  568 (1068)
                      ..+.++.....+.... ..+.-+.|++..+.+++...+   +|.|.+||+....++..+..  .|..+...++|+|....
T Consensus       148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~  222 (673)
T KOG4378|consen  148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEA  222 (673)
T ss_pred             EecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccc
Confidence            9998888777776663 456789999998887765542   67899999988777655543  23588899999997655


Q ss_pred             -EEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-ceeeeccccccceeee
Q 001490          569 -ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKL  646 (1068)
Q Consensus       569 -l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~  646 (1068)
                       +++.+.|..|.+||....+....+....   +...++|+++|.+|+.|...|.|..||++.. .++..+..|...|+++
T Consensus       223 l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  223 LLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             eEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence             4568999999999999887777776543   4689999999999999999999999999865 6788889999999999


Q ss_pred             EEcCCc
Q 001490          647 SVNPIS  652 (1068)
Q Consensus       647 ~~~~~~  652 (1068)
                      +|-+..
T Consensus       300 afq~s~  305 (673)
T KOG4378|consen  300 AFQPSP  305 (673)
T ss_pred             Eeeecc
Confidence            998654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=7.7e-18  Score=168.79  Aligned_cols=302  Identities=13%  Similarity=0.149  Sum_probs=217.8

Q ss_pred             cccEEEEEEecCCc-eEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490          710 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       710 ~~~i~~l~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  788 (1068)
                      ..++.++.|.+++. .+++++.|..|++|.+........+               ......-.+.  .|...|+++.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence            35788899988877 8999999999999998765432111               0112222233  3999999999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcc--------C--------ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC
Q 001490          789 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  851 (1068)
Q Consensus       789 dg~~l~~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  851 (1068)
                      +|..||+|+| |.+.+|-..        +        +.....+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence            9999999995 889999765        3        345567788999999999999 999999999999999999999


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeee---eecCCCccc------------CCCCce
Q 001490          852 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET  916 (1068)
Q Consensus       852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~  916 (1068)
                      |+....+.+|...|..++|.|-++++++-+.|...+.+.+.........-   +....+...            ...-..
T Consensus       155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            99999999999999999999999999999999877777665432211100   000000000            002356


Q ss_pred             EEEEeeCCCEEEEE-----eC-----CeEEEEECCCceeeeeeccCCCcCEEEEEEec------------------CCCE
Q 001490          917 HIQFHKDQTRFLLV-----HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM  968 (1068)
Q Consensus       917 ~~~~spdg~~la~~-----~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~------------------dg~~  968 (1068)
                      .++|+|||.+|++.     ..     +..++|+-.........+++-..+...+.|+|                  -+-.
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            78999999999972     12     24567766544433333444456666667765                  1223


Q ss_pred             EEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001490          969 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus       969 l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
                      ++.++ ...|+|||..+-.+++......|..         ...++|++ ||..|+..+.||-.-+--+...+
T Consensus       315 faiAt-~~svyvydtq~~~P~~~v~nihy~~---------iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  315 FAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA---------ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEee-cceEEEeccccccceEEEeeeeeee---------ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence            44554 4579999999999987776333322         34799999 79999999999977666665444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=5e-18  Score=164.60  Aligned_cols=289  Identities=14%  Similarity=0.183  Sum_probs=206.9

Q ss_pred             eEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC-------CCCCE
Q 001490          314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL  386 (1068)
Q Consensus       314 ~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s-------pdg~~  386 (1068)
                      ..+.|||||..+ .+-+.|..+.+|++...---....-.    ..........  -.....|...+|-       |+..+
T Consensus        53 kgckWSPDGSci-L~~sedn~l~~~nlP~dlys~~~~~~----~~~~~~~~~r--~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   53 KGCKWSPDGSCI-LSLSEDNCLNCWNLPFDLYSKKADGP----LNFSKHLSYR--YQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             ccceeCCCCceE-EeecccCeeeEEecChhhcccCCCCc----cccccceeEE--eccCCEEEEEEeeeccccCCCccce
Confidence            457899999854 66788899999998431100000000    0000000000  0123567777775       67889


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccc---cEEEEEEcCCCCcEEEEEEeCCCcEEEEEC-CCCcee--eEe---
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF---  457 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~---~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~---  457 (1068)
                      +|+.+.+.-|++||.-+|+...... .-.|.+   .-.+++|+|||.  .|++| ....|+++|+ +.|+.-  +..   
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence            9999999999999999998644322 223444   346899999999  56654 5788999998 455432  211   


Q ss_pred             --ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          458 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       458 --~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                        .+..+.+.+++|+|. +...++.++...++-+|.-...+....+.+|.+.|+.+.|.+||+.|++|+..   +..|..
T Consensus       202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~  277 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILC  277 (406)
T ss_pred             ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEEE
Confidence              234677888999886 55689999999999999989999999999999999999999999999999863   557999


Q ss_pred             EeCCC-CeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEE
Q 001490          536 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL  613 (1068)
Q Consensus       536 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l  613 (1068)
                      ||++. +.++..+..|......-.-....|++++|++|+.||.|++||+.+ +..+..+..+..  .++.++++|--.++
T Consensus       278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpil  355 (406)
T KOG2919|consen  278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPIL  355 (406)
T ss_pred             EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCccccee
Confidence            99985 556666777663222223345568899999999999999999998 676666665543  48999999998888


Q ss_pred             EEEECC
Q 001490          614 AVIANE  619 (1068)
Q Consensus       614 ~~~~~d  619 (1068)
                      ++++..
T Consensus       356 atssGq  361 (406)
T KOG2919|consen  356 ATSSGQ  361 (406)
T ss_pred             eeccCc
Confidence            877654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=2.5e-18  Score=170.28  Aligned_cols=262  Identities=17%  Similarity=0.225  Sum_probs=185.2

Q ss_pred             cccCCCCceEEEEcCCC-CeEEEEEcCcCcEEEEecCCCc-ceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC
Q 001490          306 LIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  383 (1068)
Q Consensus       306 l~~h~~~V~~v~~spdg-~~lla~gs~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd  383 (1068)
                      ...|.+.|..+.-++-| ..++|+=+..|.|.|||+..-- .+....+.+-+    +..-+...+.+|...=+.++|||-
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccceeeecccc
Confidence            34677788888888765 3466777778999999985311 11000000000    011122237789999999999993


Q ss_pred             -CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC---ceeeEecc
Q 001490          384 -GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG  459 (1068)
Q Consensus       384 -g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~  459 (1068)
                       -..|++|.--+.|++|...+|.-..-...+.+|+..|-.++|||..+. ++++|+-||+|+|||++.+   .++.+ +.
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ec
Confidence             234778877788999999987644334457789999999999998776 8999999999999999988   33433 78


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC---ceEEecCCCCcEEEEEEccCCCE-EEEEeeCCCCceeEEE
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVE  535 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~  535 (1068)
                      |.+.|+.|.|+...  .+|++|+.||+++|||++..+   .+..++.|..+|+++.|+|...- +++++.    |.+|.+
T Consensus       301 h~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----D~Qiti  374 (440)
T KOG0302|consen  301 HNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----DNQITI  374 (440)
T ss_pred             cCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----CCcEEE
Confidence            99999999997643  499999999999999998644   56688999999999999996554 444433    778999


Q ss_pred             EeCCCCee--------e--------eEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEE
Q 001490          536 WNESEGAI--------K--------RTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW  581 (1068)
Q Consensus       536 wd~~~~~~--------~--------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw  581 (1068)
                      ||+....-        .        +.+--|+ ....+..+.|++.- .++++.+.|| +.||
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            99863211        0        1111121 22467788888764 4666677777 4444

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=3.9e-17  Score=168.66  Aligned_cols=499  Identities=14%  Similarity=0.117  Sum_probs=296.5

Q ss_pred             CCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEE-EEEE-----cCCCCcEEEEEEeCCCcE
Q 001490          370 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAF-----SAPCKQISVITCGDDKTI  443 (1068)
Q Consensus       370 ~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~-~l~~-----s~d~~~~~l~s~~~d~~i  443 (1068)
                      .|...|.|+.|+.+...+.+++.+..+.-||+.+.. .... .+  ....|. .+-.     ...+..-.++.++.||.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hC--CcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            366778899999888877766555444445554432 2111 11  111111 1111     011111157778889999


Q ss_pred             EEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEE
Q 001490          444 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  523 (1068)
Q Consensus       444 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~  523 (1068)
                      .|.+ ..|+....+..|.+.+.+-.|++  ||.-|+++++||.|++|. +++-...++.....+|.|++|.|+...++.|
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence            9998 78888888999999999998866  778899999999999997 3333444555566789999999999988887


Q ss_pred             eeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490          524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       524 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                      ..     +.+++=.+.....+-..+.|.   +-|.++.|++..+.+++|++|-..+|||.. |..+..-..|.  .+|++
T Consensus       164 ~g-----~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~e--y~ITS  232 (737)
T KOG1524|consen  164 QG-----GHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEE--YAITS  232 (737)
T ss_pred             cC-----CeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhc--cceee
Confidence            53     357777777777777788888   999999999999999999999999999975 55555544443  46999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490          604 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  683 (1068)
Q Consensus       604 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  683 (1068)
                      ++|+|+ +.+++++. +++++   +                                                       
T Consensus       233 va~npd-~~~~v~S~-nt~R~---~-------------------------------------------------------  252 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSY-NTARF---S-------------------------------------------------------  252 (737)
T ss_pred             eeeccc-cceeeeee-eeeee---c-------------------------------------------------------
Confidence            999999 66776655 23331   1                                                       


Q ss_pred             ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCC
Q 001490          684 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  763 (1068)
Q Consensus       684 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  763 (1068)
                                             ....+.|..++||+||..++.+...|.+.+--.-..                     
T Consensus       253 -----------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq---------------------  288 (737)
T KOG1524|consen  253 -----------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQ---------------------  288 (737)
T ss_pred             -----------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehh---------------------
Confidence                                   013457888999999999988888887654211000                     


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC
Q 001490          764 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  842 (1068)
Q Consensus       764 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  842 (1068)
                             .+        +       -+.+=++. ....|.+-|+.++.+ ..+ .....+...+++-  + +|+++. ..
T Consensus       289 -------~l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~-d~L-E~p~rv~k~sL~Y--~-hLvvaT-s~  340 (737)
T KOG1524|consen  289 -------QL--------V-------SGNLKATSKSRKSITVRDVATGVQ-DIL-EFPQRVVKFSLGY--G-HLVVAT-SL  340 (737)
T ss_pred             -------hh--------h-------hccceeEeeccceEEeehhhhhHH-HHh-hCccceeeeeece--e-EEEEEe-cc
Confidence                   00        0       00111122 245577777766544 222 2445666666654  3 343333 34


Q ss_pred             eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEee
Q 001490          843 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  922 (1068)
Q Consensus       843 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  922 (1068)
                      .|++|.-........+.+....+.-+.-+. ..+++  ....+|.++..+......    ..+.+...  .....=..|-
T Consensus       341 qvyiys~knwntpiiidgre~tr~lieq~e-k~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsL  411 (737)
T KOG1524|consen  341 QVYIYSEKNWNTPIIIDGREDTRNLIEQGE-KYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSL  411 (737)
T ss_pred             EEEEEecCCccCcEEEeccccchhHhhhhh-hheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeec
Confidence            688887655443344444443332222111 12222  233446666655421111    01111111  0111112333


Q ss_pred             CCCEEEE--EeC-CeEEEEEC-CCceeeeee-ccCCCcCEEEEEEec----CCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          923 DQTRFLL--VHE-THLAIYEA-EELTCLKQW-FPISSVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       923 dg~~la~--~~d-~~i~vwd~-~~~~~~~~~-~~~h~~~v~~l~fs~----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      ....|+.  ..| .-+.+||. .+|+....- .-.|...|..++...    +.+.++.-...+.++|=.+..-....++.
T Consensus       412 andtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~  491 (737)
T KOG1524|consen  412 ANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY  491 (737)
T ss_pred             ccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh
Confidence            3344555  233 35888998 666654321 112444555555543    44566666666666655444322111111


Q ss_pred             cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001490          994 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus       994 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
                      -.     +     -....++|+  |...+++|-.|+++.+|=.|...
T Consensus       492 Ki-----G-----TmVhtLawn--dttNiLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  492 KI-----G-----TMVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             hh-----h-----hhhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence            00     0     123457787  56789999999999999998665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=1.1e-17  Score=162.44  Aligned_cols=378  Identities=12%  Similarity=0.112  Sum_probs=245.4

Q ss_pred             EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEE
Q 001490          511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL  589 (1068)
Q Consensus       511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~  589 (1068)
                      .+|||+|+++++++.     -.+.+-|..+-+..+.|...    +.|.-+.|..|..++++ ...++.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            579999999999974     36888888877766665553    46788899999888887 568889999999988877


Q ss_pred             EEEeCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecC
Q 001490          590 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  668 (1068)
Q Consensus       590 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1068)
                      ..+...  ..++.+++|||||+.+...+ -+-+|.+|.+.+.+....-.                               
T Consensus        85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------  131 (447)
T KOG4497|consen   85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------  131 (447)
T ss_pred             EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence            777643  45689999999997666554 58899999988764332111                               


Q ss_pred             CCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCc
Q 001490          669 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  748 (1068)
Q Consensus       669 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  748 (1068)
                                                              ....+..++|.+||++.+..+.-...-..++         
T Consensus       132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i---------  162 (447)
T KOG4497|consen  132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQI---------  162 (447)
T ss_pred             ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHH---------
Confidence                                                    1123466788888887666554311000000         


Q ss_pred             cceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEE
Q 001490          749 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL  825 (1068)
Q Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l  825 (1068)
                           ...+-|..-..     +.+    ..-..+.+.++|||..||+-.   +-.|..|...            -.+..+
T Consensus       163 -----~~c~~W~ll~~-----f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~------------lG~k~v  216 (447)
T KOG4497|consen  163 -----SSCKAWILLKE-----FKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG------------LGLKFV  216 (447)
T ss_pred             -----HhhHHHHHHHh-----cCC----CcccccCceECCCCcEEEEecchhhheeeeeeec------------cceeEE
Confidence                 01112221111     111    334556799999999998875   3444444332            357789


Q ss_pred             EEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccC--------------------eEEEEEcCCCCEEEEEeCCCc
Q 001490          826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR--------------------VTGLVFSDALNILVSSGGDAQ  885 (1068)
Q Consensus       826 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~--------------------V~~l~~spdg~~l~s~s~dg~  885 (1068)
                      +|+| .+++|++|+.|+.++|-+--+-+....+- |-..                    ..++.|.|..         -.
T Consensus       217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~---------~~  285 (447)
T KOG4497|consen  217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD---------LE  285 (447)
T ss_pred             Eecc-ccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhhcccccccCCCc---------cc
Confidence            9999 99999999999999997766655443332 1111                    1234444431         11


Q ss_pred             EEEEECCCC-ce-----eeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeC---CeEEEEECCCceeeeeeccCCCcC
Q 001490          886 IFVWDVDGW-GI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE---THLAIYEAEELTCLKQWFPISSVP  956 (1068)
Q Consensus       886 i~iwd~~~~-~~-----~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d---~~i~vwd~~~~~~~~~~~~~h~~~  956 (1068)
                      ..+|..+.. .+     .....++.+.......-.+.-++||+|..++|+-.|   +.+-+||+...+....+..  ..+
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~p  363 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHP  363 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccc
Confidence            223332210 00     001111111121111235778999999999999655   5699999998876665443  468


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCc
Q 001490          957 ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1030 (1068)
Q Consensus       957 v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~ 1030 (1068)
                      |....|.|....|+.+.....+++|....-..++.-.           ..+....+.|+- +|..++..+.|.-
T Consensus       364 iraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-----------~GF~i~~l~W~~-~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  364 IRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-----------KGFNIQKLQWLQ-PGEFIVLCGKDAF  425 (447)
T ss_pred             eeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-----------CCceeeeEEecC-CCcEEEEEcCCce
Confidence            9999999998888888888889999988754442211           124556788887 6888888888864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=8.9e-18  Score=167.28  Aligned_cols=237  Identities=16%  Similarity=0.260  Sum_probs=186.7

Q ss_pred             eecCCCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCcc----cceEEEccccccEEEEEEcCCCCcEEEEEEeCCC
Q 001490          367 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  441 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~  441 (1068)
                      ...||+++|..++|+| +...||+|+.|.+|.||.+..+...    .....+.+|...|--++|+|.-.. +|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            3789999999999999 6778999999999999999766542    334578899999999999999876 888999999


Q ss_pred             cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC-cEEEEEEccCCCEE
Q 001490          442 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL  520 (1068)
Q Consensus       442 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l  520 (1068)
                      +|.+||+.+|+.+.++. |...|++++|+.  ||.+|++.+.|..||+||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            99999999999999988 999999999966  888999999999999999999998887766655 456677888998 6


Q ss_pred             EEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeE-EEEEeCCCCC
Q 001490          521 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL  598 (1068)
Q Consensus       521 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~  598 (1068)
                      ++.+.++-.+.++-+||...-+.-..+.... ....|.--.|.++.+.++. |-.|+.|+.|.+....+ ++.+......
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            6666677778999999987543322222211 1245666778899888876 55899999999977653 3333333333


Q ss_pred             CCCceEEEecC
Q 001490          599 PENPRICFNKN  609 (1068)
Q Consensus       599 ~~v~~v~~s~~  609 (1068)
                      .+-..+.|-|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            44566777764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-16  Score=170.98  Aligned_cols=612  Identities=12%  Similarity=0.118  Sum_probs=346.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC----------CCcEEEEEEeCCCc
Q 001490          373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDKT  442 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d----------~~~~~l~s~~~d~~  442 (1068)
                      ..-.++.|+|.| +||.|+.. .|.|-|..+-+.+.   .+.-|...|+.+.|.|-          ...++++++...|.
T Consensus        16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            346678899877 77777644 58888988766555   67789999999999763          24557888999999


Q ss_pred             EEEEECCCCceeeEeccCCCcEEEEeeeecCCc--cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc-CCCE
Q 001490          443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR  519 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~  519 (1068)
                      |.+||...+..+..+..|..++..++|.+..+.  ..|++.....++.+|+.++++.............++.+.| |.+.
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh  170 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH  170 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence            999999999999999999999999999875543  4778888889999999999999888877777777788888 4454


Q ss_pred             EEEEeeCCCCceeEEEEeCC-------CCeeeeEEecccc----------------ccCC------eEEEEEecCCCEEE
Q 001490          520 LFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQIL  570 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~l~  570 (1068)
                      +...+.    .|.+.+-+.-       .|+..+.-..|..                ....      ...++|+|.-+.++
T Consensus       171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            444332    3334443321       1122211111110                0000      11256677766666


Q ss_pred             EEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCC--CEEEEEECCCeEEEEECCCCceeeec-----cc-cccc
Q 001490          571 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LSDN  642 (1068)
Q Consensus       571 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~-~~~~  642 (1068)
                      .......+.++|++-..++.....+.+.  +.-+.+-|++  ..|++...||.+.+|-.+........     .. ....
T Consensus       247 fi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q  324 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQ  324 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccc
Confidence            6677888999999999999888876553  4556666654  57999999999999987652111111     00 0111


Q ss_pred             eeeeEEcCCccccccccccCeeeecCCCCCC-cccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecC
Q 001490          643 LRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG  721 (1068)
Q Consensus       643 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~  721 (1068)
                      +.++.  +.......         .+...|. ...++.--.+|.+.+|.+..+...........     .-+..+.|...
T Consensus       325 ~~~vr--~m~~~rp~---------~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~i-----el~~pf~f~~~  388 (1062)
T KOG1912|consen  325 VHVVR--PMEEFRPV---------IGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSI-----ELVLPFDFNLS  388 (1062)
T ss_pred             eEEEe--echhcccc---------eeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccc-----cccccccccCc
Confidence            11111  11110000         0000122 33344445567788888764322211111000     00111111111


Q ss_pred             -----CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001490          722 -----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  796 (1068)
Q Consensus       722 -----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~  796 (1068)
                           ...++..+.||.           ...|.     .+.-.++.....+...+     .......+.    -.++|.|
T Consensus       389 ~~~v~k~~l~~LS~dg~-----------h~sGs-----~~~~~~p~p~~t~~~~~-----p~~n~~~~~----~pLvAvG  443 (1062)
T KOG1912|consen  389 TKLVGKTSLISLSDDGS-----------HSSGS-----TCVRMRPMPELTKVEND-----PGGNTPAGT----VPLVAVG  443 (1062)
T ss_pred             eeehhhccccchhhcCC-----------CCCCc-----eeeecccCcccceeecC-----CCCCcccee----eeeEEee
Confidence                 111222222220           00000     00000110000000000     000000111    1356777


Q ss_pred             e-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEE---------ECCCeEEEEEcCCcee--eeeecc-ccc
Q 001490          797 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG---------MDDSTILIYNARSSEV--ISKLEG-HSK  863 (1068)
Q Consensus       797 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg---------~~dg~v~iwd~~~~~~--~~~~~~-h~~  863 (1068)
                      . .|+|.++|+.++.....+..|...|.++.|-. ..+++-.+         ..-+.+.+-|+.+|..  .+.+++ ...
T Consensus       444 T~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g-~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~des  522 (1062)
T KOG1912|consen  444 TNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLG-NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDES  522 (1062)
T ss_pred             cCCceEEEEEecchhhhhhhcccccceeeeeecc-ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcC
Confidence            6 69999999999999999999999999999985 44333322         2224678889998853  232332 567


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEe-eCCCEEEE-------------
Q 001490          864 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH-KDQTRFLL-------------  929 (1068)
Q Consensus       864 ~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~-------------  929 (1068)
                      +|..+..|.-|+||+..-.|.-+.+||+++..     +++.......   .++.+.|+ |.-.-+..             
T Consensus       523 pI~~irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWsl~~~~si~qk~ls~q~sms~n~  594 (1062)
T KOG1912|consen  523 PIRAIRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWSLPKHPSIKQKELSKQSSMSENL  594 (1062)
T ss_pred             cceeeeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeecccCCCCcccccchhhhhhhhce
Confidence            89999999999999999999999999998732     3333222221   37888888 43322221             


Q ss_pred             --EeCCeEEEEECC-------CceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec-------
Q 001490          930 --VHETHLAIYEAE-------ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL-------  993 (1068)
Q Consensus       930 --~~d~~i~vwd~~-------~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~-------  993 (1068)
                        .......++.+.       +|.+...........+-.++|  .+..|+.|..+|.+.+||+...+-.....       
T Consensus       595 vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~  672 (1062)
T KOG1912|consen  595 VVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAH  672 (1062)
T ss_pred             eeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhh
Confidence              000112222221       111100000000111222333  45689999999999999976543222000       


Q ss_pred             --cccccCCCCccCcccceEEEECC-----CCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490          994 --STAYLRPTTSCLHVYPHAIAAHP-----LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus       994 --~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
                        .....|..   +....+-..|-|     .+.-.+..++.|++.++-|+..-+..-.++|+++
T Consensus       673 ~l~~~~ipG~---~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~d~  733 (1062)
T KOG1912|consen  673 SLTFPQIPGD---HTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPNDN  733 (1062)
T ss_pred             heecccCCCC---ceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceecCCCC
Confidence              00011110   111112222222     1222334458899999998877776666666643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1e-17  Score=162.53  Aligned_cols=191  Identities=16%  Similarity=0.189  Sum_probs=149.6

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEc-cCceeEEE---e----cCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIV-MTFKTILT---I----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  851 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~-~~~~~~~~---~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  851 (1068)
                      ...+++|+|||.+|..|....|++||+ ..|..-..   +    .+..+-|.+++|+|.+...+|+|+...++-||.-..
T Consensus       160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            345899999999999999999999999 44432211   1    123567899999998888999999999999999999


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE
Q 001490          852 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  930 (1068)
Q Consensus       852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~  930 (1068)
                      +.++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+.....    .+-.+.+|......-......|+|++||+|
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG  315 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASG  315 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeecc
Confidence            9999999999999999999999999999876 66799999986331    222233333211223345667999999996


Q ss_pred             -eCCeEEEEECCC-ceeeeeeccCCCcCEEEEEEecCCCEEEEEECC
Q 001490          931 -HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  975 (1068)
Q Consensus       931 -~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d  975 (1068)
                       .||.|++||+++ |..+.. ...|...+..+++.|-=..++|++..
T Consensus       316 ~tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  316 DTDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence             899999999998 665655 55678899999999987777777654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=4.1e-18  Score=172.68  Aligned_cols=252  Identities=13%  Similarity=0.208  Sum_probs=184.6

Q ss_pred             CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccc------eeeeeecCCCcceEEEEECCC-CCEEEEEeCCc
Q 001490          322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML------FKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH  394 (1068)
Q Consensus       322 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~h~~~V~~~~~spd-g~~las~~~d~  394 (1068)
                      |+ ++|.|+.|..|.|||+.=-..+.    +...++.....      .+.....+|+..|.+++|..+ ...||+|+.|.
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            44 78999999999999985322111    01111100000      011224579999999999986 56789999999


Q ss_pred             EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcEEEEeeeecC
Q 001490          395 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPHAKE  473 (1068)
Q Consensus       395 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~~~~~~  473 (1068)
                      +|++||+.+|++..   .+..|.+.|.+++|+|.... +|++|+.|++|.+.|.+..... ..+ ...+.|-.++|.+..
T Consensus       267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~s  341 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHS  341 (463)
T ss_pred             eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCC
Confidence            99999999998765   66789999999999998776 8999999999999998853322 222 255778888988753


Q ss_pred             CccEEEEEEcCCcEEEEeCCCC-CceEEecCCCCcEEEEEEccCCCEEE-EEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490          474 NIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQ  551 (1068)
Q Consensus       474 ~~~~l~s~s~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~-~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  551 (1068)
                       ...++++..||+|+-+|++.. ++...+..|..+|.++++++.-..++ +++    .++.|.+|++..-.... ...|.
T Consensus       342 -e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~~~~~~~~~-v~~~~  415 (463)
T KOG0270|consen  342 -ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWKFDVDSPKS-VKEHS  415 (463)
T ss_pred             -ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEeecCCCCcc-ccccc
Confidence             357788899999999999987 67889999999999999998766554 444    37789999986543321 22222


Q ss_pred             cccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCCCeEE
Q 001490          552 LQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL  589 (1068)
Q Consensus       552 ~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~  589 (1068)
                      ...+...|.++.|+-.++++ |+..+.++|||+.+...+
T Consensus       416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            22355778888888766554 778888999999876554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.78  E-value=4.9e-18  Score=168.18  Aligned_cols=173  Identities=22%  Similarity=0.373  Sum_probs=145.5

Q ss_pred             cceeeecccCCCCceEEEEcC--CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHP--VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  377 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~sp--dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  377 (1068)
                      ..-+.++.+|..+=..++|||  .|+  |++|..-+.|++|...+|.-..                ....+.+|+..|-.
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~v----------------d~~Pf~gH~~SVED  262 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKV----------------DQRPFTGHTKSVED  262 (440)
T ss_pred             cCceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceee----------------cCccccccccchhh
Confidence            345677889999999999999  554  5888888999999998875332                12226789999999


Q ss_pred             EEECCC-CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC---CCce
Q 001490          378 VVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSR  453 (1068)
Q Consensus       378 ~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~  453 (1068)
                      ++|||. ...||+|+.||+|+|||+..+...... ..+.|...|+-+.|+.+-.  +|++|+.||+++|||++   .+++
T Consensus       263 LqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  263 LQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             hccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCc
Confidence            999996 567899999999999999998543333 3478999999999998887  89999999999999987   4678


Q ss_pred             eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC
Q 001490          454 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  494 (1068)
Q Consensus       454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~  494 (1068)
                      +..|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus       340 VA~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  340 VATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ceeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence            899999999999999998755 5888899999999999854

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=5.4e-19  Score=191.47  Aligned_cols=286  Identities=19%  Similarity=0.284  Sum_probs=220.5

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  381 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s  381 (1068)
                      .++.|.||...|.|+.|...|. ++++|+.|..|+||..+++.++..                   +.||++.|+.++.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs  241 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVS  241 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccc
Confidence            3556789999999999999997 679999999999999999999976                   88999999999999


Q ss_pred             CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE---ec
Q 001490          382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FE  458 (1068)
Q Consensus       382 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~  458 (1068)
                      .+..++|+++.|..|++|.+.++..+.   .+.+|++.|++++|+|-.      +.+.||++++||..-.-.+..   ++
T Consensus       242 ~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~  312 (1113)
T KOG0644|consen  242 SNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLK  312 (1113)
T ss_pred             hhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCC
Confidence            999999999999999999999998776   678999999999999943      678899999999761111111   11


Q ss_pred             c-CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCC-EEEEEeeCCCCceeEEEE
Q 001490          459 G-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEW  536 (1068)
Q Consensus       459 ~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i~~w  536 (1068)
                      . ...-+.++.|  .+++..+++++.|+.-..|.+.....      +...+.-+.++.|.. +.++.-    .+..+.+|
T Consensus       313 ~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vw  380 (1113)
T KOG0644|consen  313 FTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVW  380 (1113)
T ss_pred             cccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeee
Confidence            1 1233444444  34667889999999888886542111      111112222222322 222222    26678999


Q ss_pred             eCCCCeeeeEEeccccccCCeEEEEEecCCCEEE-EEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEE
Q 001490          537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  615 (1068)
Q Consensus       537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  615 (1068)
                      ++.+|.....+.+|.   ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++.
T Consensus       381 nl~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  381 NLYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             ecccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEec
Confidence            999999999999988   8999999999877665 5899999999999999988777632 2 34677899999999999


Q ss_pred             EECCCeEEEEECCCCcee
Q 001490          616 IANENRIKILETPESNSV  633 (1068)
Q Consensus       616 ~~~dg~i~iwd~~~~~~~  633 (1068)
                      ..+-|.+.|.....+...
T Consensus       456 sd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  456 SDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             CCCCCceEEeccCCCccc
Confidence            999999999887765443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=2.2e-16  Score=163.20  Aligned_cols=500  Identities=12%  Similarity=0.164  Sum_probs=288.2

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE--CCCCC
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDGS  385 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--spdg~  385 (1068)
                      .|.+.|.|+.|+.+.. ++.+++++-.+.-||+.+.+... ....       ...++..   .|   +....-  -....
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~~dDh~~~~~~~~~~~s~~~-~~~p-------~df~pt~---~h---~~~rs~~~g~~~d   76 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFVSDDHQIFKWSDVSRDSVEV-AKLP-------DDFVPTD---MH---LGGRSSGGGKGSD   76 (737)
T ss_pred             ccceeEEeecccccce-EEEeccCceEEEeecccchhhhh-hhCC-------cccCCcc---cc---ccccccCCCCCcc
Confidence            5677888999999887 55555544444444544332211 0100       0000000   01   000000  01235


Q ss_pred             EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001490          386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  465 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~  465 (1068)
                      .|+.++.||.+.+-+-...    ....+..|.+.|.+-.|+|||.  -|++.|.||.|++|. ++|-...++.....+|+
T Consensus        77 ~~~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR  149 (737)
T ss_pred             eEEEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence            6888889998888775432    2225678999999999999999  799999999999999 77877677777888999


Q ss_pred             EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeee
Q 001490          466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  545 (1068)
Q Consensus       466 ~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~  545 (1068)
                      |++|.|+.+ ..+++.+  +.+.+=.+........++.|.+-|.++.|++..+.+++++.    |....+||. .|..+.
T Consensus       150 c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~-~G~~Lf  221 (737)
T KOG1524|consen  150 CARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDA-QGANLF  221 (737)
T ss_pred             EEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeecc-cCcccc
Confidence            999988644 3444433  45555556667778888999999999999999999999985    778999996 455555


Q ss_pred             EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001490          546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  625 (1068)
Q Consensus       546 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  625 (1068)
                      .-..|.   .+|++++|+|+ +.++.++. ++++            +.. .....|..++||+||..+++|+..|.+.+=
T Consensus       222 ~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  222 TSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cCChhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            555555   89999999999 45555543 3344            211 123458899999999999999999887653


Q ss_pred             ECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecC
Q 001490          626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  705 (1068)
Q Consensus       626 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  705 (1068)
                      ..-+.+...                                       +..-++......|.+-|+...   .+..+.+|
T Consensus       284 ~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~p  321 (737)
T KOG1524|consen  284 YAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEFP  321 (737)
T ss_pred             eeehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhCc
Confidence            322221110                                       111112222233333333211   11222222


Q ss_pred             CccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490          706 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  785 (1068)
Q Consensus       706 ~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  785 (1068)
                           .++.....  .-..|+++... .+++|.-.                 -|+..     ..++.    ....+.-+.
T Consensus       322 -----~rv~k~sL--~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~lie  367 (737)
T KOG1524|consen  322 -----QRVVKFSL--GYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLIE  367 (737)
T ss_pred             -----cceeeeee--ceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHhh
Confidence                 23433332  22234444333 45555321                 11111     00000    000000000


Q ss_pred             EecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCC---eEEEEEeCCCCCEEEEEE--CCCeEEEEEc-CCceeee--e
Q 001490          786 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT---ATSLAFNPHDNNVIAIGM--DDSTILIYNA-RSSEVIS--K  857 (1068)
Q Consensus       786 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~~l~~s~~d~~~lasg~--~dg~v~iwd~-~~~~~~~--~  857 (1068)
                        ...+++......++.+|..+ |+.....+.+...   .+.=.+|- ....|+.-.  ....+.+||. .+|+...  .
T Consensus       368 --q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsL-andtLaird~ad~kvlhlFd~istgk~qgDgk  443 (737)
T KOG1524|consen  368 --QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSL-ANDTLAIRDNADPKVLHLFDLISTGKRQGDGK  443 (737)
T ss_pred             --hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeec-ccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence              01123333334557777665 3332222212111   11112222 233455432  3346788998 7776542  2


Q ss_pred             ecccccCeEEEEEc----CCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCC
Q 001490          858 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  933 (1068)
Q Consensus       858 ~~~h~~~V~~l~~s----pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~  933 (1068)
                      +-.|...|..++..    ++.+.++.-...+.+.|=.+++-..        .+........|..++|+..-+.|+--.|+
T Consensus       444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgk--------ee~I~KiGTmVhtLawndttNiLcglqDt  515 (737)
T KOG1524|consen  444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGK--------EEEIYKIGTMVHTLAWNDTTNILCGLQDT  515 (737)
T ss_pred             ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCc--------hhhhhhhhhhhhhhhhccccceeeeeccc
Confidence            22366667666664    3557788888888888877765221        11112222358899999999988888999


Q ss_pred             eEEEEECCCc
Q 001490          934 HLAIYEAEEL  943 (1068)
Q Consensus       934 ~i~vwd~~~~  943 (1068)
                      .+.||=..+-
T Consensus       516 ~fsVWy~pn~  525 (737)
T KOG1524|consen  516 CFSVWYYPNE  525 (737)
T ss_pred             eEEEEEcCCc
Confidence            9999987643

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=3.7e-18  Score=178.32  Aligned_cols=261  Identities=15%  Similarity=0.199  Sum_probs=197.5

Q ss_pred             eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEcc-----CCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC
Q 001490          367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  441 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~  441 (1068)
                      .+..|.+.|++++|.|-..-|++++.||++.+|+++     ....+.+..++.+|.++|.|++..++++  .+++||.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            477899999999999999999999999999999993     2334667779999999999999999999  899999999


Q ss_pred             cEEEEECCCC----------ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC--CCcEE
Q 001490          442 TIKVWDAVTG----------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCT  509 (1068)
Q Consensus       442 ~i~iwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~i~  509 (1068)
                      +|+.|++...          .....+.||.+.|+.++++..++  .|++++.||+++.|+...... ..+...  .+-..
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            9999965411          22357789999999999988654  799999999999998766555 222222  22234


Q ss_pred             EEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----ccCCeEEEEEecCCCEEEEEECCCeEEEEEcC
Q 001490          510 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  584 (1068)
Q Consensus       510 ~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~  584 (1068)
                      ++.+.... ...++...    .+.-.+.+...+..+..+.....    ....+..+.++|.+...+++.+|+.|+++|..
T Consensus       444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            44443322 12222111    12233444444444444432221    12457788999999999999999999999999


Q ss_pred             CCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490          585 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  638 (1068)
Q Consensus       585 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1068)
                      ++.++.....+  ...+.++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus       520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence            99999888766  45689999999999999999999999999987766655443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4e-18  Score=174.41  Aligned_cols=302  Identities=16%  Similarity=0.226  Sum_probs=234.2

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .+...|..|.+.|..|-|...|. +|++|+.|..|.+||+.++.....                  ...||...|..-.|
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKF  193 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKF  193 (559)
T ss_pred             hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhc
Confidence            45567889999999999999997 789999999999999999887643                  15578888888888


Q ss_pred             CC--CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-
Q 001490          381 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  457 (1068)
Q Consensus       381 sp--dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  457 (1068)
                      -|  +.+.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -+.+++.|+.+.-.|+.++.....+ 
T Consensus       194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence            88  4678999999999999877554444434467789999999999999887 7999999999999999887654333 


Q ss_pred             --ccCCC---cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce------EE------ecCCCCcEEEEEEccCCCEE
Q 001490          458 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VD------YDAPGLGCTRMAYSANGRRL  520 (1068)
Q Consensus       458 --~~h~~---~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~~------~~~~~~~i~~~~~s~d~~~l  520 (1068)
                        ..+..   ...+++..|. +...+++++.|..+++||.+.....      ..      .....-.|++++|+.++.-|
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence              22333   4567777765 3458999999999999997653322      11      11223379999999877766


Q ss_pred             EEEeeCCCCceeEEEEeCCCCe------------ee-eEEeccccccCCeEEEE-EecCCCEEEEEECCCeEEEEEcCCC
Q 001490          521 FSCGTSKEGESFLVEWNESEGA------------IK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV  586 (1068)
Q Consensus       521 ~~~~~~~~~~~~i~~wd~~~~~------------~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~  586 (1068)
                      ++...    +-.|+++....+.            .+ +.++||... ..|..+- |.|..+++++|+.-|.|.||+..++
T Consensus       352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence            66554    4458888544321            22 337888733 2366665 4788999999999999999999999


Q ss_pred             eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          587 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       587 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      +.+..+.+..+  -|+|+.-+|--..||+.+-|..|+||.-.+.
T Consensus       427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            99999987766  4899999999999999999999999987544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.5e-18  Score=193.52  Aligned_cols=251  Identities=14%  Similarity=0.160  Sum_probs=196.8

Q ss_pred             CceEEEEcCCCCe---EEEEEcCcCcEEEEecCCC---cceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490          312 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  385 (1068)
Q Consensus       312 ~V~~v~~spdg~~---lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~  385 (1068)
                      .-..++|.+.|..   ++|.|..||.|.+||...-   .....                ......|.+.|..+.|++...
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~  129 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG  129 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence            5678999988876   6899999999999998652   11110                011556999999999999765


Q ss_pred             -EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC--
Q 001490          386 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--  462 (1068)
Q Consensus       386 -~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--  462 (1068)
                       .||+|+.||.|.|||+..-+...... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+  
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence             99999999999999998744322110 1124568999999988776 899999999999999999988877766554  


Q ss_pred             cEEEEeeeecCCccEEEEEEcCC--cEEEEeCCCCCc-eEEecCCCCcEEEEEEccCC-CEEEEEeeCCCCceeEEEEeC
Q 001490          463 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~s~dg--~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      .+..+.|+|+...+++++..+|+  .|.+||++.... ...+..|...|.++.|++.+ .+|++++.    |+.|.+|+.
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~  283 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP  283 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence            46788999875544444444443  599999987654 45667899999999999966 78888775    667999999


Q ss_pred             CCCeeeeEEeccccccCCeEEEEEecCCC-EEEEEECCCeEEEEEcCCCe
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  587 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~  587 (1068)
                      ++++.+..+....   +.+..+.|+|... .+++++-||.|.|+.+....
T Consensus       284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999988755   8899999999877 66668999999999987654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=3.7e-17  Score=162.90  Aligned_cols=237  Identities=15%  Similarity=0.181  Sum_probs=178.0

Q ss_pred             cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-C
Q 001490          306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G  384 (1068)
Q Consensus       306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g  384 (1068)
                      ..||+++|..++|.|-....+|+||.|.+|.||++..+...+...            .+...|.||...|.-++|+|. .
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA~  144 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTAP  144 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccch
Confidence            479999999999999888899999999999999998766554311            223348899999999999996 4


Q ss_pred             CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490          385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  464 (1068)
Q Consensus       385 ~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  464 (1068)
                      ..|++++.|.+|.+||+.+|+.+.   .+. |.+.|.++.|+.||.  ++++.+.|+.|+|||..+|+.+..-.+|.+.-
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k  218 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK  218 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence            568889999999999999998655   454 999999999999999  89999999999999999999998888887643


Q ss_pred             EE-EeeeecCCccEEEEEE---cCCcEEEEeCCCCCceEEec--CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          465 YS-LCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       465 ~~-i~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      .. +.|  -.+|.++.+|.   .+..+-+||..+.+....+.  .....|.---|.+|.+.+..++.   ||+.|+.|.+
T Consensus       219 ~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK---GD~~IRYyEi  293 (472)
T KOG0303|consen  219 PARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK---GDSSIRYFEI  293 (472)
T ss_pred             cceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec---CCcceEEEEe
Confidence            22 223  23666444442   46789999988766544322  23446666678899999988873   6889999998


Q ss_pred             CCCeeeeEEeccccccCCeEEEEEecC
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTA  565 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  565 (1068)
                      ....+.-.+-..-....+-..+.|.|.
T Consensus       294 t~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  294 TNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             cCCCceeEEecccccCCcccccccccc
Confidence            766532222111111234456666664

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=8e-17  Score=159.70  Aligned_cols=301  Identities=12%  Similarity=0.118  Sum_probs=214.8

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceee-eeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      +.+.+.+|.+-|.++.||.+|+ +||+|+.|..+++|++..--..++ .++.+             .-..|...|.|++|
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEE
Confidence            4456789999999999999997 789999999999999864322211 11110             12346689999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-e--eeEe
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSF  457 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~  457 (1068)
                      ....++|.+|..+++|++-|+++.+.+... .-....+.|..+..+|...  .+++.+.++.|.+||..... .  +..+
T Consensus       114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence            999999999999999999999998765422 1112334899999999987  89999999999999987654 2  2223


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-------ecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      ........++-|+|. ...+|++.+..+-+-+||.+.......       +........++.|+|+|..+++.-.    .
T Consensus       191 AN~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~  265 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G  265 (609)
T ss_pred             cCCCccceeeeecCC-CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence            334455677778775 346889999999999999876543221       1111223467889999999987654    2


Q ss_pred             eeEEEEeCCCCee-eeEEecccc----ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC-------------------
Q 001490          531 SFLVEWNESEGAI-KRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------------------  586 (1068)
Q Consensus       531 ~~i~~wd~~~~~~-~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-------------------  586 (1068)
                      ..-.+||+-+.++ +.++. |..    ....+.+++|..|- .+++|+.+-.|++|.+...                   
T Consensus       266 ~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  266 KCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             CCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence            2345677766443 22222 221    12346778887664 4899999999999987521                   


Q ss_pred             ----eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490          587 ----QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       587 ----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                          +.+..+.+|  ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus       344 ~~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  344 IFIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             heecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence                122344544  3457899999999999999999999999755

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=2.5e-17  Score=155.38  Aligned_cols=293  Identities=17%  Similarity=0.193  Sum_probs=199.2

Q ss_pred             ccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeec-CCCcceEE
Q 001490          299 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR  377 (1068)
Q Consensus       299 p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~  377 (1068)
                      |..-...|++|...|+++.|-.+++  |.+|..-|.|++|++.+.+.+..                   ++ .|...|+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~   61 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN   61 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence            3445566789999999999999996  58899999999999998776643                   33 46778999


Q ss_pred             EEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC-----CCcE--EEEEEeCCC-cEEEEECC
Q 001490          378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV  449 (1068)
Q Consensus       378 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~  449 (1068)
                      +.--|+ ..|.+-+.|+.+.+|++..+.-+      ..|.-.++++.|.+-     ++..  .++.-+... .+.+-|..
T Consensus        62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g  134 (323)
T KOG0322|consen   62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG  134 (323)
T ss_pred             eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence            999988 56677789999999999876433      245555666666542     2110  111111000 01112211


Q ss_pred             CCceeeEe----ccCCCcEEEEeeeec-CCccEEEEEEcCCcEEEEeCCCCCce----------EEecCCCCcEEEEEEc
Q 001490          450 TGSRTYSF----EGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGAR----------VDYDAPGLGCTRMAYS  514 (1068)
Q Consensus       450 ~~~~~~~~----~~h~~~v~~i~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~----------~~~~~~~~~i~~~~~s  514 (1068)
                      ....+...    .+..+.+.+..+... ..--++++|-++|.+.+||+.++...          .....+..++.++.+.
T Consensus       135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya  214 (323)
T KOG0322|consen  135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA  214 (323)
T ss_pred             ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence            11111111    122344555443222 12235677889999999999987433          3345566788899988


Q ss_pred             cCCCEEEEEeeCCCCceeEEEEeCCC--Cee-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 001490          515 ANGRRLFSCGTSKEGESFLVEWNESE--GAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  591 (1068)
Q Consensus       515 ~d~~~l~~~~~~~~~~~~i~~wd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  591 (1068)
                      +.-..=++++.    +..+..|.++.  +.+ ++...  ...+..+..+.+-||++.+++++.|+.||||+.++.+++..
T Consensus       215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~--~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV  288 (323)
T KOG0322|consen  215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEI--TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV  288 (323)
T ss_pred             hhhcCCcCCCc----cccceeeeeccccCcccccceE--EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence            75555455544    33477777653  222 11111  11235688899999999999999999999999999999999


Q ss_pred             EeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          592 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      +..|.  ..|++++|+|+..++|.++.|++|.+|++
T Consensus       289 LkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 LKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99886  46999999999999999999999999986

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=4.7e-18  Score=184.34  Aligned_cols=288  Identities=14%  Similarity=0.228  Sum_probs=227.0

Q ss_pred             eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490          542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  621 (1068)
Q Consensus       542 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  621 (1068)
                      +.++.+.+|.   ..|+|+.|...|.++++|++|..++||.++++.++....+|..  .+..++.+.+..++++++.|..
T Consensus       181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence            3455677777   8999999999999999999999999999999999999987754  5999999999999999999999


Q ss_pred             EEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccce
Q 001490          622 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  701 (1068)
Q Consensus       622 i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  701 (1068)
                      |++|.+.++.++..+++|.+.|++++|+|..                          +.+.||++++||.....-   ..
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~---~y  306 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPR---IY  306 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEecccccccc---cc
Confidence            9999999999999999999999999998742                          566789999999762110   00


Q ss_pred             eecCC-ccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCC
Q 001490          702 LLLPS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  780 (1068)
Q Consensus       702 ~~~~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1068)
                      ...|. ......+.++.|...+..+++++.++.-..|.+..-               .|                 +...
T Consensus       307 ~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~  354 (1113)
T KOG0644|consen  307 VPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNL  354 (1113)
T ss_pred             CCCCCCcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccc
Confidence            00111 113355677888889999999999988887765421               11                 1111


Q ss_pred             eeEEEEecCC-CEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490          781 VPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  858 (1068)
Q Consensus       781 v~~l~~s~dg-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~  858 (1068)
                      +.-+.++.|- .+.+++. +-.+++|++.+|...+.+.+|...+..+.++|.+.++..+++.||...|||+..|.+++..
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            2222222222 3444443 6779999999999999999999999999999988888889999999999999999877665


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  895 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~  895 (1068)
                      ....+.+..-+||+||+.++....-|.++|.....++
T Consensus       435 ~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  435 FIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            4334557778999999999998888999998776544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.3e-15  Score=140.33  Aligned_cols=286  Identities=13%  Similarity=0.151  Sum_probs=196.0

Q ss_pred             cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490          712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  791 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  791 (1068)
                      .|.+-+++|.+++++++..+|.|.+..+..-...   .+         .+.....+    .+..+|+.++..++|.  ..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~---sa---------~~~gk~~i----v~eqahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG---SA---------EPPGKLKI----VPEQAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc---cc---------CCCCCcce----eeccccCCCeeeeeee--hh
Confidence            3455678999999999999999999987642210   00         00111111    1223699999999998  56


Q ss_pred             EEEEEeCCeEEEEEccCcee------EEEec-------CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490          792 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  858 (1068)
Q Consensus       792 ~l~~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~  858 (1068)
                      +|.+++||.|+-|.......      +....       ..-..|+++-+.|..+.++.+| .|+.++-||+++|+...++
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEE
Confidence            78888899999998753221      11111       1234789999999555555544 8999999999999999999


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc----CCCCceEEEEeeCCCEEEEEeCCe
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH  934 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~la~~~d~~  934 (1068)
                      +||++.|.+++--.....+++|++||++++||.++++....  +...+....    ...+|  .+..-+..+|++|....
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~  228 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK  228 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence            99999999999855666789999999999999999774442  222111111    11233  44556778999998889


Q ss_pred             EEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEE
Q 001490          935 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1014 (1068)
Q Consensus       935 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1068)
                      +.+|.+++.++...+..  ..++..+.|-.|  .+++++..++|.-|.+. |.+.+...      -.  ....++.....
T Consensus       229 lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~  295 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT  295 (325)
T ss_pred             eeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence            99999999988876543  567888888654  57778888899999876 44443333      11  11123333444


Q ss_pred             CCCCCCEEEEEeCCCcEEEEe
Q 001490         1015 HPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus      1015 ~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
                      +|  -+.+-.++-...+.++.
T Consensus       296 ~p--~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  296 SP--IKFISIAGFSNKLHILK  314 (325)
T ss_pred             Cc--eEEEEecccceeeeeee
Confidence            55  46666777777777653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=1.8e-16  Score=151.51  Aligned_cols=260  Identities=17%  Similarity=0.219  Sum_probs=187.1

Q ss_pred             eecccCCCCceEEEEcCCCCeEEEEEcCc-------CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       304 ~~l~~h~~~V~~v~~spdg~~lla~gs~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      .+|..|.++|+.++-+|-.+++|++...+       -.+.||.+.......  +...|+.       ...+-..+-+.|.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--~~~tlE~-------v~~Ldteavg~i~  127 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--NSSTLEC-------VASLDTEAVGKIN  127 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--ccchhhH-------hhcCCHHHhCcee
Confidence            45577889999999999999999988763       237888875432110  0000100       0001124556999


Q ss_pred             EEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEE---EccccccEEEEEEcC--CCCcEEEEEEeCCCcEEEEECCCC
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       377 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~---~~~h~~~v~~l~~s~--d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      |+.|.|++..||+-. |..|.+|+++.+..+.....   -.+|....++-+|+|  ||.  .+++.+ |+++..||+++.
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~  203 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM  203 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence            999999999999875 77899999988765321111   123566788999998  566  566554 899999999988


Q ss_pred             ceeeEe-ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCC-EEEEEeeCCC
Q 001490          452 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKE  528 (1068)
Q Consensus       452 ~~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~  528 (1068)
                      ++...+ ..|...|..+.|.|+. ..+|++++.||.|++||.+..+ .+..+..|.+.+.++.|+|.-. ++++++.   
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---  279 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---  279 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence            877666 4688999999998863 3689999999999999998755 4668889999999999999655 4455543   


Q ss_pred             CceeEEEEeCCCCe-----------------------------eeeEEeccccccCCeEEEEEecCCCEEEE-EECCCeE
Q 001490          529 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI  578 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i  578 (1068)
                       |..|.+|...+-.                             .+.++..|.   +.|++++|+.-..++++ -+.||.+
T Consensus       280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence             5568887543211                             123455555   89999999988887765 7899998


Q ss_pred             EEEEcC
Q 001490          579 KIWDMN  584 (1068)
Q Consensus       579 ~iwd~~  584 (1068)
                      .|=.+.
T Consensus       356 iIs~V~  361 (370)
T KOG1007|consen  356 IISSVP  361 (370)
T ss_pred             EeecCC
Confidence            886654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-15  Score=140.95  Aligned_cols=278  Identities=17%  Similarity=0.213  Sum_probs=193.8

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCC---cceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  388 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~la  388 (1068)
                      .|..-++||.++ +++.|..+|+|.+..+++-   +....            ...+.....+|.++|+.++|.  ..+|+
T Consensus        12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~------------gk~~iv~eqahdgpiy~~~f~--d~~Ll   76 (325)
T KOG0649|consen   12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPP------------GKLKIVPEQAHDGPIYYLAFH--DDFLL   76 (325)
T ss_pred             HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCC------------CCcceeeccccCCCeeeeeee--hhhee
Confidence            567778999998 6799999999999998642   11100            111112246899999999999  45677


Q ss_pred             EEeCCcEEEEEEccCCCc---ccceEE--Ecccc-----ccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490          389 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       389 s~~~d~~i~vwd~~~~~~---~~~~~~--~~~h~-----~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      +| .||.|+=|.+..-..   .+...+  ..-|.     -.|+++...|...  -++.++.|+.++.||+++|+..++++
T Consensus        77 s~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   77 SG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             ec-cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence            76 469999998864322   111111  11222     3688999998877  45555679999999999999999999


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC----------cEEEEEEccCCCEEEEEeeCCC
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE  528 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~d~~~l~~~~~~~~  528 (1068)
                      ||++.|.++.-..  ....+++|++||++|+||.++.+....+.....          .|.  +..-+..++++|+.   
T Consensus       154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgG---  226 (325)
T KOG0649|consen  154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGG---  226 (325)
T ss_pred             CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCC---
Confidence            9999999997632  234799999999999999999988776543322          343  44466778988863   


Q ss_pred             CceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          529 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                        ..+.+|+++..++...|.-.    ..+..+.|..  +.++++++.+.+.-|.+. |.+....+...+  ...+..++.
T Consensus       227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~  295 (325)
T KOG0649|consen  227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT  295 (325)
T ss_pred             --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence              34999999999988888764    4778888864  578888888899999874 555555544332  244444443


Q ss_pred             CC-CEEEEEECCCeEEEE
Q 001490          609 NG-TLLAVIANENRIKIL  625 (1068)
Q Consensus       609 ~~-~~l~~~~~dg~i~iw  625 (1068)
                      .. +++-.++..+.+.|+
T Consensus       296 ~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  296 SPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CceEEEEecccceeeeee
Confidence            32 344445555566554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=4.3e-15  Score=163.22  Aligned_cols=252  Identities=11%  Similarity=0.104  Sum_probs=165.3

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcc-Ccee--EEEecCCCCCeEEEEEeCCCCCEEEEEE-CCCeEEEEEcCC-
Q 001490          779 EAVPCFALSKNDAYLFSAS--GGVISLYIVM-TFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-  851 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~-~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-  851 (1068)
                      .....++++||+++|+++.  ++.|.+|++. +++.  +.... .......++|+| ++++|++++ .++.|.+|++.+ 
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence            4566889999999998775  5889999986 3432  22222 234567899999 788777766 488999999974 


Q ss_pred             ce---eeeeecccccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeee---eeeecCCCcccCCCCceEEEEeeCC
Q 001490          852 SE---VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQFHKDQ  924 (1068)
Q Consensus       852 ~~---~~~~~~~h~~~V~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~spdg  924 (1068)
                      +.   .+..+.+ ......++++|+|++++++ ..++.|.+||+.+......   .......+     .....++|+|||
T Consensus       113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg  186 (330)
T PRK11028        113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence            32   2333332 2346778999999988654 4568999999986321110   11111112     235689999999


Q ss_pred             CEEEEE--eCCeEEEEECCC--ce--eeeeec--cC---CCcCEEEEEEecCCCEEEEEEC-CCcEEEEEcCCCcEEEEe
Q 001490          925 TRFLLV--HETHLAIYEAEE--LT--CLKQWF--PI---SSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRI  992 (1068)
Q Consensus       925 ~~la~~--~d~~i~vwd~~~--~~--~~~~~~--~~---h~~~v~~l~fs~dg~~l~t~~~-dg~v~vwd~~~~~~~~~~  992 (1068)
                      ++++++  .+++|.+|+++.  ++  .+..+.  ..   +......+.|+|||++|+++.. ++.|.+|++........+
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~  266 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF  266 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence            999874  378999999973  32  222211  11   1223346889999999998854 689999999654321111


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeC-CCcEEEEeCCCCCCCCccC
Q 001490          993 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTWAVL 1046 (1068)
Q Consensus       993 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~-dg~i~~w~~~~~~~~~~~~ 1046 (1068)
                      ....  +.+     ..+..++++| |+++|+++.. +++|.+|++..+...+...
T Consensus       267 ~~~~--~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~~  313 (330)
T PRK11028        267 EGHQ--PTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTEL  313 (330)
T ss_pred             eEEE--ecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence            1111  111     2344689999 6777777665 8999999997665444443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=2.7e-15  Score=149.09  Aligned_cols=241  Identities=11%  Similarity=0.171  Sum_probs=185.3

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC--eEEEEEcCCceee
Q 001490          778 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI  855 (1068)
Q Consensus       778 ~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~  855 (1068)
                      ...+..+.|..|...|..|+....++|..+..............|..+-||.   .++|..+.+.  .+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            4456677788899999999877788888876554333333445677788876   4777666543  6999999988877


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-E--eC
Q 001490          856 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE  932 (1068)
Q Consensus       856 ~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~--~d  932 (1068)
                      ..+. ...+|.+|.+.  .++|+++=.+. |+|||+++.+     .+.+..........+.++++++.+.+||. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7766 55679999996  45666655555 9999999854     44444433222234666777777789998 2  56


Q ss_pred             CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCcEEEEeccccccCCCCccCcccceE
Q 001490          933 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1011 (1068)
Q Consensus       933 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1068)
                      |.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||++..|+ |||+.+.+|+.+.+|+.+.+ +       +....
T Consensus       153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~IyS  223 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIYS  223 (391)
T ss_pred             ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEEE
Confidence            8899999999988887 4589999999999999999999999987 89999999999999996554 2       33457


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEeCCCCC
Q 001490         1012 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1040 (1068)
Q Consensus      1012 ~~~~p~~~~~l~~~~~dg~i~~w~~~~~~ 1040 (1068)
                      ++|+| |+++|++.+..++|++|++....
T Consensus       224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  224 LSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            89999 78999999999999999997654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.2e-16  Score=156.85  Aligned_cols=292  Identities=13%  Similarity=0.165  Sum_probs=203.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec--CCC-CcEE
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT  509 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~-~~i~  509 (1068)
                      .++++-..|.|++||..+|+.+..++++...++.+.|........+.+++.||+|++||++.......+.  .+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            6788888999999999999999999999999999999875566789999999999999999877655443  333 3566


Q ss_pred             EEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee-eeEEe-ccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCC
Q 001490          510 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV  586 (1068)
Q Consensus       510 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~  586 (1068)
                      +++..-.++.++++..-...+..|.+||++..+. ++.+. .|.   ..|+++.|+|.. +.|++||.||-|.+||+...
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            7776667888888876555678899999998766 55543 344   899999999974 67888999999999999754


Q ss_pred             e----EEEEEeCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccccccc
Q 001490          587 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  661 (1068)
Q Consensus       587 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  661 (1068)
                      .    ++.++..   ...|..+.|..++ +.+.+-+...+..+|+++.+.....+....-..  ...        -.-.+
T Consensus       199 ~EeDaL~~viN~---~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~--~d~--------r~~~~  265 (376)
T KOG1188|consen  199 NEEDALLHVINH---GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA--DDL--------RKEDN  265 (376)
T ss_pred             cchhhHHHhhcc---cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh--hhH--------Hhhhh
Confidence            2    2233322   2447889998876 458888889999999999886443333211000  000        00000


Q ss_pred             CeeeecCCCCCCcccceeecc-cccceeecccccC-CcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEec
Q 001490          662 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFAR-PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  739 (1068)
Q Consensus       662 ~~~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~  739 (1068)
                      ....++.....+....+.++. -++..++-+.... ............+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus       266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            011112221233444444444 4555555544211 22222333344557778899999999999999999999999985


Q ss_pred             c
Q 001490          740 P  740 (1068)
Q Consensus       740 ~  740 (1068)
                      +
T Consensus       346 ~  346 (376)
T KOG1188|consen  346 E  346 (376)
T ss_pred             C
Confidence            3

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=1.2e-14  Score=144.67  Aligned_cols=240  Identities=12%  Similarity=0.132  Sum_probs=187.4

Q ss_pred             CcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCC--CcEEEEECC
Q 001490          372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAV  449 (1068)
Q Consensus       372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~  449 (1068)
                      ...+..+.|..|...|..|+.|| -++|..+.-....   ........|.-+-|+..    ++|..+.+  +.+++.+..
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS----LvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS----LVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc----eeEEEecCCCceEEEEEcc
Confidence            34677788999999999999999 6888877644311   11122335666677654    34443333  459999999


Q ss_pred             CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC---CCcEEEEEEccCCCEEEEEeeC
Q 001490          450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      .+..+..+. ...+|.++.+..    +.|+++-.+. |.|||+++.+.+.++...   ...+.++++++.+.+++.-+.-
T Consensus        77 k~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   77 KKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             cCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence            988888775 567788888743    4676666555 999999999988876554   3356666677777788875432


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCe-EEEEEcCCCeEEEEEeCCCCCCCCceEE
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRIC  605 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~  605 (1068)
                      .  .|.|++||..+-+.+..+..|.   +.+.+++|+++|.+|+++|+.|+ |||+.+.+|+.+..+.-......|.+++
T Consensus       151 t--~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~  225 (391)
T KOG2110|consen  151 T--SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS  225 (391)
T ss_pred             C--CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence            2  5569999999999999999888   99999999999999999999997 6899999999999998665556788999


Q ss_pred             EecCCCEEEEEECCCeEEEEECCCC
Q 001490          606 FNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       606 ~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      |+|++.+|++.++.++|++|.++..
T Consensus       226 Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  226 FSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             ECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999999999999998854

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.5e-16  Score=163.29  Aligned_cols=248  Identities=17%  Similarity=0.163  Sum_probs=165.7

Q ss_pred             EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEE
Q 001490          412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW  490 (1068)
Q Consensus       412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vw  490 (1068)
                      ++.||++.|.|++|+.||.  +|++|++|-.+.|||.-..+.++.+ +||.+.|.++.|.|..+...+++|..|..|+++
T Consensus        45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            6789999999999999999  9999999999999999988888777 789999999999999888999999999999999


Q ss_pred             eCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC-CEE
Q 001490          491 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI  569 (1068)
Q Consensus       491 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l  569 (1068)
                      |+...+....                                    |-...+....+..|.   ..|..++-.|++ +.+
T Consensus       123 dl~~~~~~~~------------------------------------d~~~~~~~~~~~cht---~rVKria~~p~~Phtf  163 (758)
T KOG1310|consen  123 DLDSSKEGGM------------------------------------DHGMEETTRCWSCHT---DRVKRIATAPNGPHTF  163 (758)
T ss_pred             eccccccccc------------------------------------ccCccchhhhhhhhh---hhhhheecCCCCCceE
Confidence            9875322100                                    000111223344555   678888888888 778


Q ss_pred             EEEECCCeEEEEEcCCCeEEE--------EEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEECCCC-ceeeecc--
Q 001490          570 LAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG--  637 (1068)
Q Consensus       570 ~~~s~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~--  637 (1068)
                      .++++||+|+-+|++....-.        ........-...++..+| +..+|++|+.|--.++||.... +....-.  
T Consensus       164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~  243 (758)
T KOG1310|consen  164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM  243 (758)
T ss_pred             EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence            889999999999998632110        001111122356888999 5678999999999999995321 1111100  


Q ss_pred             --ccccceeeeE-EcCCccccccccc------cCeeeecCCCCCCcccceeecccccceeecccccCCcccceeec
Q 001490          638 --VLSDNLRKLS-VNPISTVTGAGIA------NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  704 (1068)
Q Consensus       638 --~~~~~i~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  704 (1068)
                        .......|+. |+|.......+..      ...+.|    +|+|.-++..-....|.++|+...+.........
T Consensus       244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~  315 (758)
T KOG1310|consen  244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPI  315 (758)
T ss_pred             cCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeecCcc
Confidence              0111112222 2222221111100      112344    6788777777777788999987665554444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.2e-16  Score=153.77  Aligned_cols=277  Identities=15%  Similarity=0.165  Sum_probs=193.3

Q ss_pred             eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--CCCEEEEEeCCcEEEEEEc
Q 001490          324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAY  401 (1068)
Q Consensus       324 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--dg~~las~~~d~~i~vwd~  401 (1068)
                      ..+|++-..|+|++||..+|+.+..                   +.+|...+..++|..  ....+.+|+.||+|++||+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~  101 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI  101 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence            3568888889999999999988876                   667888888888877  4678999999999999999


Q ss_pred             cCCCcccceEEEcccc-ccEEEEEEcCCCCcEEEEEEe----CCCcEEEEECCCCce-eeEe-ccCCCcEEEEeeeecCC
Q 001490          402 HGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKEN  474 (1068)
Q Consensus       402 ~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~i~~~~~~~  474 (1068)
                      .+....... .+..+. .+..+++..-.++  ++++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+ +
T Consensus       102 Rs~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~  177 (376)
T KOG1188|consen  102 RSQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-D  177 (376)
T ss_pred             ecchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-C
Confidence            987654433 445565 4667777665666  676664    466799999998766 4443 679999999999997 5


Q ss_pred             ccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCC-CEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc
Q 001490          475 IHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  550 (1068)
Q Consensus       475 ~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~  550 (1068)
                      ..+|++||.||.|.++|+.....   +.....+...|.++.|..++ +.+.+.+.    .....+|+++.+.....+...
T Consensus       178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~  253 (376)
T KOG1188|consen  178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENP  253 (376)
T ss_pred             CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCc
Confidence            57999999999999999876533   22334456679999999888 33444443    345899999988765444432


Q ss_pred             ccc---------cCCeEEEEEecCCCEEEE-EECCCeEEEEEcC---CCe---EEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          551 QLQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       551 ~~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      ...         ...+.......++...+. |+.-|+..++-+.   ++.   .+..+.++ +...|+++.|...+..+.
T Consensus       254 ~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  254 DVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             cchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceee
Confidence            100         011111111223344444 3335666665443   333   33333332 334578889998999999


Q ss_pred             EEECCCeEEEEECC
Q 001490          615 VIANENRIKILETP  628 (1068)
Q Consensus       615 ~~~~dg~i~iwd~~  628 (1068)
                      +|+.||.+.+|..+
T Consensus       333 TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVE  346 (376)
T ss_pred             ccCCCceEEEEecC
Confidence            99999999999964

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=1.1e-16  Score=151.15  Aligned_cols=287  Identities=15%  Similarity=0.129  Sum_probs=197.9

Q ss_pred             eecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEc-cccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490          367 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i  445 (1068)
                      .+++|.+.|+++.|-.+++ |.+|...|.|++|++.+.....   .+. .|...|+.+.-.|++.   +.+-+.|+.+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l   81 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL   81 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence            4778999999999998876 8889999999999999976544   445 4677899999999865   899999999999


Q ss_pred             EECCCCceeeEeccCCCcEEEEeeeec---CC----ccEEEEEEcCCc-EEEEeCCCCCceEEecC----CCCcEEEEEE
Q 001490          446 WDAVTGSRTYSFEGHGAPVYSLCPHAK---EN----IHFIFSISVDGK-IKAWLYDSLGARVDYDA----PGLGCTRMAY  513 (1068)
Q Consensus       446 wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~----~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~----~~~~i~~~~~  513 (1068)
                      |++.-+..+.   .|.-.++++.|.+.   .+    .+.++.-+.... +++-|............    ..+.+.+..+
T Consensus        82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            9988765442   23334444443321   01    011222111110 22222222222222111    2234555543


Q ss_pred             cc-CCCE-EEEEeeCCCCceeEEEEeCCCCeeee----------EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEE
Q 001490          514 SA-NGRR-LFSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  581 (1068)
Q Consensus       514 s~-d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw  581 (1068)
                      .. ++.+ ++.++.   +.+.+.+||+.++..+.          ....|.   .+|.++.+.+.-..=++|+.+..+..|
T Consensus       159 ~~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  159 DHACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             cccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence            22 3443 333332   36679999999984332          233444   889999999877777888888899999


Q ss_pred             EcCCC--eEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCcccccccc
Q 001490          582 DMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  659 (1068)
Q Consensus       582 d~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  659 (1068)
                      +++..  .+.......-..+++..+.+-||++.+|+++.|+.||+|+.++.+++..++.|+..+++++|+          
T Consensus       233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs----------  302 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS----------  302 (323)
T ss_pred             eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence            88643  322111111123568899999999999999999999999999999999999999999999997          


Q ss_pred             ccCeeeecCCCCCCcccceeecccccceeecc
Q 001490          660 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  691 (1068)
Q Consensus       660 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~  691 (1068)
                                  |+...++.++.|++|.+|++
T Consensus       303 ------------pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 ------------PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------------CCCchhhhccCCceEEeeec
Confidence                        56778899999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=1.3e-14  Score=159.39  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=178.5

Q ss_pred             eEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe-CCcEEEEEEc
Q 001490          324 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY  401 (1068)
Q Consensus       324 ~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~-~d~~i~vwd~  401 (1068)
                      +++++...++.|.+||+.+ |+......                 + .+.+....++++||+++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3455557789999999974 33221111                 1 1335677899999999987764 4788999999


Q ss_pred             cCCCcccceEEEccccccEEEEEEcCCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeeEeccCCCcEEEEeeeecCCcc
Q 001490          402 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH  476 (1068)
Q Consensus       402 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~-~~d~~i~iwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~  476 (1068)
                      .....+...... ...+....++|+|+++.  ++++ ..++.|.+|++.+ +.   .+..+.+ ......++++|  +++
T Consensus        65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~  138 (330)
T PRK11028         65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNR  138 (330)
T ss_pred             CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCC
Confidence            732222211121 23345678999999994  4444 3588999999874 32   2233332 23355666755  666


Q ss_pred             EEEE-EEcCCcEEEEeCCCCCceEE-----e-cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC--Ce--eee
Q 001490          477 FIFS-ISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR  545 (1068)
Q Consensus       477 ~l~s-~s~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--~~--~~~  545 (1068)
                      ++++ ...++.|.+||+++......     . ...+.....++|+|||++++++..   +++.|.+|++..  ++  .+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence            7755 45679999999986432211     1 112345678999999999988764   356799999873  32  233


Q ss_pred             EEecccc---ccCCeEEEEEecCCCEEEEEE-CCCeEEEEEcCCCe----EEEEEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          546 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       546 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      .+.....   .......+.++|++++++++. .++.|.+|++....    .+......   .....++++|+|++|+++.
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence            3332210   011234688999999999975 47899999986432    22333221   2356899999999999887


Q ss_pred             C-CCeEEEEECC
Q 001490          618 N-ENRIKILETP  628 (1068)
Q Consensus       618 ~-dg~i~iwd~~  628 (1068)
                      . +++|.+|+++
T Consensus       293 ~~~~~v~v~~~~  304 (330)
T PRK11028        293 QKSHHISVYEID  304 (330)
T ss_pred             ccCCcEEEEEEc
Confidence            6 8999999875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=9.2e-17  Score=168.01  Aligned_cols=270  Identities=14%  Similarity=0.188  Sum_probs=192.3

Q ss_pred             eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp  382 (1068)
                      ..+|..|.+.|+.++|+|... .+++++.||++.+|++.....-.           .....+...+.+|+++|.|++.++
T Consensus       287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~-----------~~~~epi~tfraH~gPVl~v~v~~  354 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSA-----------EKDVEPILTFRAHEGPVLCVVVPS  354 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcc-----------ccceeeeEEEecccCceEEEEecC
Confidence            347889999999999999987 67999999999999993311100           011112233889999999999999


Q ss_pred             CCCEEEEEeCCcEEEEEEccCCCc-------ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       383 dg~~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                      +++.+.+|+.||+|+.|++.....       ......+.||++.|+.+++|+...  .|++++.||++++|+...... .
T Consensus       355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~  431 (577)
T KOG0642|consen  355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C  431 (577)
T ss_pred             CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence            999999999999999996642211       111225679999999999999888  699999999999999766555 3


Q ss_pred             EeccCC--CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC-------CCcEEEEEEccCCCEEEEEeeC
Q 001490          456 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       456 ~~~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      ++....  +...++.+.... -...++...-+.-.+.++........+...       ...+..+...|.+...+++.. 
T Consensus       432 ~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-  509 (577)
T KOG0642|consen  432 TFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-  509 (577)
T ss_pred             ccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence            343222  222334332111 012222222233333333333333332221       124667788888888888775 


Q ss_pred             CCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490          527 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       527 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                         +..|+++|..++.++.....|.   ..++++++.|+|.++++++.|+.+++|.+....++.....+
T Consensus       510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence               6679999999999999888887   89999999999999999999999999999877766655443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=8e-16  Score=147.10  Aligned_cols=182  Identities=17%  Similarity=0.220  Sum_probs=128.9

Q ss_pred             eeEEEEec--CCCEEEEEeCCeEEEEEccCceeEEEec-CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-ceeee
Q 001490          781 VPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS  856 (1068)
Q Consensus       781 v~~l~~s~--dg~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~  856 (1068)
                      .++-+|||  ||..+++.+|++++.||+.|.+....+. .|...+..+.|.|+-..+|++++.||.|+|||.+. ..++.
T Consensus       173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~  252 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ  252 (370)
T ss_pred             ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence            34455666  8899999999999999999988877765 57789999999996677899999999999999976 45789


Q ss_pred             eecccccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCe
Q 001490          857 KLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH  934 (1068)
Q Consensus       857 ~~~~h~~~V~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~  934 (1068)
                      .+.+|...|+++.|+|. .++++++|.|..|.+|....-....                  .+.|-.|..-.-. ....+
T Consensus       253 el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dseer  314 (370)
T KOG1007|consen  253 ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEER  314 (370)
T ss_pred             ccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHHh
Confidence            99999999999999995 4778899999999999876522111                  0111111000000 00001


Q ss_pred             EEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEECCCcEEEEEcC
Q 001490          935 LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       935 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v~vwd~~  984 (1068)
                      ++  -+.+|...  .+..|...|.+++||.-.. .+|+-+.||.+.|=.+.
T Consensus       315 ~k--pL~dg~l~--tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  315 VK--PLQDGQLE--TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cc--cccccccc--cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            11  11222221  2567899999999987554 56778889988775544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=8.8e-16  Score=152.40  Aligned_cols=293  Identities=11%  Similarity=0.076  Sum_probs=208.4

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCc---ccceEEEc--cccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKT  442 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~~~--~h~~~v~~l~~s~d~~~~~l~s~~~d~~  442 (1068)
                      +.+|.+.|.++.||.++++||+|+.|..+.+|+++..-.   .++. .+.  .|...|.|++|...++  .+++|+.+++
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~  128 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENR--FLYSGERWGT  128 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCe--eEecCCCcce
Confidence            678999999999999999999999999999999863211   1111 222  3557999999998888  8999999999


Q ss_pred             EEEEECCCCceeeEecc--CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCC
Q 001490          443 IKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG  517 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~  517 (1068)
                      |.+.|+++.+.+..+..  ..+.|+.+..+|.  ...+++.+.+|.|.+||.+....   .......+.....+.|+|-.
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999999998887742  2358999998886  35899999999999999987552   33334445578889999977


Q ss_pred             CEEEEEeeCCCCceeEEEEeCCCCee-eeE---EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE-EEE
Q 001490          518 RRLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTI  592 (1068)
Q Consensus       518 ~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~~  592 (1068)
                      ..|+.......   -+-+||.+.... +..   +.+.......-.++.|+|+|+++++--....-.+||+...++. ..+
T Consensus       207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            76665544333   378899875432 111   2222211223467889999999988766555667887764432 222


Q ss_pred             eCCC----CCCCCceEEEecCCCEEEEEECCCeEEEEECCCC-----------------------ceeeeccccccceee
Q 001490          593 DAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRK  645 (1068)
Q Consensus       593 ~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~i~~  645 (1068)
                      ....    ....+.+++|--|- .+++|+++=.|++|.+...                       ..+..+++|...+..
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            2111    11235567776554 4999999999999998732                       234455666666666


Q ss_pred             eEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecc
Q 001490          646 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  691 (1068)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~  691 (1068)
                      +.|+                      +...++++.+-.+.+++|..
T Consensus       363 VRF~----------------------~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  363 VRFS----------------------QHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eeec----------------------CCcceEeccchhhheecccc
Confidence            6664                      55677888888899999974

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.71  E-value=2.4e-15  Score=144.08  Aligned_cols=289  Identities=18%  Similarity=0.258  Sum_probs=205.4

Q ss_pred             eeecccCCCCceEEEEc--CCCCeEEEEEcCc----CcEEEEec--CCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490          303 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTNV----GDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  374 (1068)
Q Consensus       303 ~~~l~~h~~~V~~v~~s--pdg~~lla~gs~d----g~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  374 (1068)
                      +.++..+- .+.++.||  |+.+..||.|+.-    +.|.|-.+  .+++.+...+                  ..|..+
T Consensus        38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP   98 (364)
T KOG0290|consen   38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP   98 (364)
T ss_pred             EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence            33444443 67888888  6666778999853    44555444  4455443322                  248889


Q ss_pred             eEEEEECCCCC-----EEEEEeCCcEEEEEEccCCCc-ccceEE-----EccccccEEEEEEcCCCCcEEEEEEeCCCcE
Q 001490          375 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGSD-ARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI  443 (1068)
Q Consensus       375 V~~~~~spdg~-----~las~~~d~~i~vwd~~~~~~-~~~~~~-----~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i  443 (1068)
                      ++.+.|.||.+     +||+++  ..+++|.+...+. +.....     -..+..++++..|+.-... ++.+.+-|.+.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC  175 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC  175 (364)
T ss_pred             ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence            99999999863     566553  3599999974221 111111     2246679999999876665 89999999999


Q ss_pred             EEEECCCCce---eeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEe-cCC--CCcEEEEEEcc-C
Q 001490          444 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAP--GLGCTRMAYSA-N  516 (1068)
Q Consensus       444 ~iwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~--~~~i~~~~~s~-d  516 (1068)
                      .|||+++|..   ...+-.|...|..++|.. +..+.+++.+.||.+|++|++.......+ ...  ..+...++|++ |
T Consensus       176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD  254 (364)
T KOG0290|consen  176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD  254 (364)
T ss_pred             EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence            9999998733   456778999999999986 34568999999999999999987654432 222  34778899988 4


Q ss_pred             CCEEEEEeeCCCCceeEEEEeCCC-CeeeeEEeccccccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCCCeE------
Q 001490          517 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------  588 (1068)
Q Consensus       517 ~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~------  588 (1068)
                      -+++++...+   ...|.+.|++. ...+..+++|.   ..|+.++|.|.. ..|.++++|..+.|||+...-.      
T Consensus       255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            5677766543   33589999986 45678889988   999999999974 5778899999999999975322      


Q ss_pred             EEEEeCCCCCCCCceEEEec-CCCEEEEEECCCeEEE
Q 001490          589 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKI  624 (1068)
Q Consensus       589 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i  624 (1068)
                      +....   ....|+.+.|++ .+..++++.. +.+.+
T Consensus       329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            22222   234589999997 5677877765 44444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.6e-16  Score=159.55  Aligned_cols=198  Identities=17%  Similarity=0.204  Sum_probs=162.9

Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecc
Q 001490          782 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  860 (1068)
Q Consensus       782 ~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~  860 (1068)
                      .+++|+.||..++++. ||++|||+......+.....|...|.++.||| ||++|++-+.| ..+||+..+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999997 89999999988888888888999999999999 99999999999 899999999977666542


Q ss_pred             --cccCeEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCceeee-eeeecCCCcccCCCCceEEEEeeCCCEEEE-Ee
Q 001490          861 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH  931 (1068)
Q Consensus       861 --h~~~V~~l~~spdg-----~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~  931 (1068)
                        .......+.|+.|+     ..++....-+.|+.|++........ +..+....+.    .|++++.|+||+++|. +.
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence              23346678898887     4444455566788888766443211 1112222222    5999999999999999 58


Q ss_pred             CCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001490          932 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN  985 (1068)
Q Consensus       932 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~  985 (1068)
                      ||.|.|++..+.+++.-....|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999888889999999999999999999999999999887775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.68  E-value=4.1e-12  Score=130.21  Aligned_cols=415  Identities=12%  Similarity=0.113  Sum_probs=233.2

Q ss_pred             CCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE-------eCCc
Q 001490          322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-------YSKH  394 (1068)
Q Consensus       322 g~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~-------~~d~  394 (1068)
                      |.+++.+++.|  +..+++.+|+..+                    +..|-+-|....|+|||+.+|..       ...+
T Consensus        50 GD~IiFt~~Dd--lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~ta  107 (668)
T COG4946          50 GDRIIFTCCDD--LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTA  107 (668)
T ss_pred             CcEEEEEechH--HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEEecCCCccc
Confidence            44577777653  5555667776654                    55677889999999999999873       1234


Q ss_pred             EEEEEEccCCCcccceEEEccccccEEE-EEEcCCCCcEEEEEEeCCCcEEEE----ECCC-CceeeEeccCCCcEEEEe
Q 001490          395 IVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKVW----DAVT-GSRTYSFEGHGAPVYSLC  468 (1068)
Q Consensus       395 ~i~vwd~~~~~~~~~~~~~~~h~~~v~~-l~~s~d~~~~~l~s~~~d~~i~iw----d~~~-~~~~~~~~~h~~~v~~i~  468 (1068)
                      .+.+.+.+.|+..+.  ++-|  ...+. +.|+|||+  ++++.....-.--|    .+.. |-....+  .-++.+.+.
T Consensus       108 Dly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--nlGpathiv  179 (668)
T COG4946         108 DLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--NLGPATHIV  179 (668)
T ss_pred             cEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--cCCceeeEE
Confidence            588888888875432  2223  33333 45999998  67765443322222    2211 1101111  122333333


Q ss_pred             eeecCCccEEEEEEcCC------------cEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE
Q 001490          469 PHAKENIHFIFSISVDG------------KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  535 (1068)
Q Consensus       469 ~~~~~~~~~l~s~s~dg------------~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~  535 (1068)
                      +   .|| .++.|-..-            .=++|--..+. ....+..-.+.|.+-.+-.+.-++++   +-+|-+.++-
T Consensus       180 ~---~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~eG~GnlYS  252 (668)
T COG4946         180 I---KDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DHEGVGNLYS  252 (668)
T ss_pred             E---eCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cccCccceEE
Confidence            2   133 222221110            11233222222 11111111222222222222223333   3345666777


Q ss_pred             EeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC----CC--CC----CCceEE
Q 001490          536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GG--LP----ENPRIC  605 (1068)
Q Consensus       536 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~--~~----~v~~v~  605 (1068)
                      -|+....+.+...-     ..-.+-..+.||++++- +.-|.|++||.++..... +...    ..  ..    +..-+.
T Consensus       253 vdldGkDlrrHTnF-----tdYY~R~~nsDGkrIvF-q~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyle  325 (668)
T COG4946         253 VDLDGKDLRRHTNF-----TDYYPRNANSDGKRIVF-QNAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLE  325 (668)
T ss_pred             eccCCchhhhcCCc-----hhccccccCCCCcEEEE-ecCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhh
Confidence            77654332221111     12233345678887765 345789999988754432 2211    00  00    001111


Q ss_pred             -Eec-CCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccc
Q 001490          606 -FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  683 (1068)
Q Consensus       606 -~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  683 (1068)
                       |++ +|.+++..+. |...|.+.-.+-.++.                                                
T Consensus       326 dfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv------------------------------------------------  356 (668)
T COG4946         326 DFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV------------------------------------------------  356 (668)
T ss_pred             hhccCCCcEEEEEec-CcEEEECCCCCeeEEc------------------------------------------------
Confidence             333 5777777766 5555554333221111                                                


Q ss_pred             ccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCc-cEEEEeccCCccCCCccceeccCCcccCCC
Q 001490          684 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPR  762 (1068)
Q Consensus       684 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  762 (1068)
                                              ++.+.|.-..+..+++.++.+..|| .+-|++....                    
T Consensus       357 ------------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------------  392 (668)
T COG4946         357 ------------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------------  392 (668)
T ss_pred             ------------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------------
Confidence                                    1333455555666666778888877 6777765432                    


Q ss_pred             CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECC
Q 001490          763 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  841 (1068)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  841 (1068)
                        + .....    +.-+.|.++..++||++++++.+ ..+.+.|++++.....-+...+-|+..+|+| +++++|.+--+
T Consensus       393 --e-~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~  464 (668)
T COG4946         393 --E-VKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPE  464 (668)
T ss_pred             --e-EEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCc
Confidence              2 11110    24578999999999999999986 7799999999988766666778999999999 99999998777


Q ss_pred             C----eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeC
Q 001490          842 S----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG  882 (1068)
Q Consensus       842 g----~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~  882 (1068)
                      |    .|++||+.+++....-. ..+.=.+-+|.|||++|..-+.
T Consensus       465 gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         465 GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence            6    78999999887654433 2233356789999999887654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5e-15  Score=167.48  Aligned_cols=235  Identities=13%  Similarity=0.111  Sum_probs=162.9

Q ss_pred             cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCccc
Q 001490          332 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR  408 (1068)
Q Consensus       332 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~  408 (1068)
                      +..|.+||....... .                   +..|...+.+.+|||||++||+++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~-~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF-I-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCce-E-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            468999998765422 1                   55678889999999999999988654   479999998875321


Q ss_pred             ceEEEccccccEEEEEEcCCCCcEEEEE-EeCCCcEEE--EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEE-cC
Q 001490          409 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD  484 (1068)
Q Consensus       409 ~~~~~~~h~~~v~~l~~s~d~~~~~l~s-~~~d~~i~i--wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~d  484 (1068)
                       ...+.+|   ...++|+|||+  .|+. .+.++.+.|  ||+.++. ...+..+...+....|++  ||+.|+.++ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             1123333   44789999999  4554 446776555  5666665 455666777777788866  677666554 67


Q ss_pred             CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          485 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       485 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      |..++|+++..........+..  ....|+|||++++..+.     ..+.+||+.+++........     ....+.|+|
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP  381 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP  381 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence            8889998765433222222222  45789999999988764     23777999988764332221     234678999


Q ss_pred             CCCEEEEEECCCeEEEEEc--CCCeEEEEEeCCCCCCCCceEEEecC
Q 001490          565 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN  609 (1068)
Q Consensus       565 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~  609 (1068)
                      +|++|+.++.++...+|.+  .+|..+..+..+.  ..+...+|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            9999999999998888875  3577777776543  34778899884

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=1.6e-13  Score=149.38  Aligned_cols=318  Identities=10%  Similarity=0.122  Sum_probs=201.7

Q ss_pred             ceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecC
Q 001490          530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  609 (1068)
Q Consensus       530 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  609 (1068)
                      ++.|.+.|..+.+.+.++....   ..-..+.|+||++++++++.||.|.++|+.+++.+.++.....   ...+++|+|
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D   88 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD   88 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred             CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence            6679999999999999998654   3345578999999999999999999999999999999986533   578999999


Q ss_pred             CCEEEEEE-CCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeeccccccee
Q 001490          610 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  688 (1068)
Q Consensus       610 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~  688 (1068)
                      |++++++. .++.+.++|..+.+.+..+.......                                             
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---------------------------------------------  123 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---------------------------------------------  123 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence            99998776 58999999999988777654211100                                             


Q ss_pred             ecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC-ccEEEEeccCCccCCCccceeccCCcccCCCCCCce
Q 001490          689 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  767 (1068)
Q Consensus       689 wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  767 (1068)
                                        .....++.++..++....++..-.+ +.+.+-|+.....                      +
T Consensus       124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~----------------------~  163 (369)
T PF02239_consen  124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN----------------------L  163 (369)
T ss_dssp             ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC----------------------E
T ss_pred             ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc----------------------c
Confidence                              0023456777788888866555554 6666555443210                      1


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecC----CCCCeEEEEEeCC---------CC
Q 001490          768 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----PSPTATSLAFNPH---------DN  832 (1068)
Q Consensus       768 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------d~  832 (1068)
                      ....+   ..........|+|+++|++++.  .+.|.++|.++++.+..+..    |..+...+ .+|.         .+
T Consensus       164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~  239 (369)
T PF02239_consen  164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG  239 (369)
T ss_dssp             EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred             ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence            11111   1234556789999999998876  57899999999988766532    33333322 1221         22


Q ss_pred             CEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCCceeeeeeeecCCCc
Q 001490          833 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV  908 (1068)
Q Consensus       833 ~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~  908 (1068)
                      ...++.-....+.+|+..+.+.++++....++ .-+.-+||++++...    ...++|.++|.++.+...  .+....+ 
T Consensus       240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-  315 (369)
T PF02239_consen  240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-  315 (369)
T ss_dssp             SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred             ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence            22222222335667888889999999877666 778889999999987    455889999999864221  1211111 


Q ss_pred             ccCCCCceEEEEeeCCCEEEEE---eCCeEEEEECCCceeeeeec
Q 001490          909 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF  950 (1068)
Q Consensus       909 ~~~~~~v~~~~~spdg~~la~~---~d~~i~vwd~~~~~~~~~~~  950 (1068)
                          ..+..+.|++||+++..+   .++.|.|||..+.+.+.++.
T Consensus       316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                147899999999988763   34489999999999888644

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=3.4e-13  Score=146.74  Aligned_cols=332  Identities=15%  Similarity=0.162  Sum_probs=207.9

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE
Q 001490          431 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  510 (1068)
Q Consensus       431 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~  510 (1068)
                      .+++++-..++.|.+.|..+.+.+.++......-..+.+  ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            345677778999999999999999999765554344555  4588899999999999999999999887776544 5678


Q ss_pred             EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc----ccCCeEEEEEecCCCEEEEE-ECCCeEEEEEcCC
Q 001490          511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK  585 (1068)
Q Consensus       511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~  585 (1068)
                      +++|+||++++++...   .+.+.++|.++.+.++.+.....    ....+..+..+|....++.. -+.+.|.+-|...
T Consensus        83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            9999999999987642   55799999999999888765321    12467788888888855554 4558888889877


Q ss_pred             CeEE--EEEeCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccC
Q 001490          586 VQLL--TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  662 (1068)
Q Consensus       586 ~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  662 (1068)
                      .+.+  ..+...   .......|+|++++++++ ..++.|.++|..+++.+..+.....                     
T Consensus       160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~---------------------  215 (369)
T PF02239_consen  160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKK---------------------  215 (369)
T ss_dssp             SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSS---------------------
T ss_pred             ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccc---------------------
Confidence            6544  333322   224678999999988775 4467899999887755443321000                     


Q ss_pred             eeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCC
Q 001490          663 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  742 (1068)
Q Consensus       663 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~  742 (1068)
                                                                   .|..+...+ .+|..-           .+|.    
T Consensus       216 ---------------------------------------------p~~~~~~~~-php~~g-----------~vw~----  234 (369)
T PF02239_consen  216 ---------------------------------------------PHPGPGANF-PHPGFG-----------PVWA----  234 (369)
T ss_dssp             ---------------------------------------------BEETTEEEE-EETTTE-----------EEEE----
T ss_pred             ---------------------------------------------ccccccccc-cCCCcc-----------eEEe----
Confidence                                                         011111111 111111           0111    


Q ss_pred             ccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCeEEEEEccCceeEEEecCCCCC
Q 001490          743 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPT  821 (1068)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l-~~~~dg~i~iwd~~~~~~~~~~~~~~~~  821 (1068)
                                                                 .+..+... ...+.+.+.+||..+++.++++......
T Consensus       235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence                                                       01111111 1122345557888889999998876666


Q ss_pred             eEEEEEeCCCCCEEEEE----ECCCeEEEEEcCCceeeeeecccc-cCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCC
Q 001490          822 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGDA--QIFVWDVDGW  894 (1068)
Q Consensus       822 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~dg--~i~iwd~~~~  894 (1068)
                       .-+..+| +++++.+.    ...++|.++|.++.+.+..+.... ..+..+.|++||+++..+..++  .|.++|..+.
T Consensus       272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence             7888899 88888887    445899999999998887776433 3588999999999876655443  6999999997


Q ss_pred             ceee
Q 001490          895 GIQT  898 (1068)
Q Consensus       895 ~~~~  898 (1068)
                      +...
T Consensus       350 ~~~~  353 (369)
T PF02239_consen  350 KEKK  353 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7555

...

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.5e-14  Score=161.70  Aligned_cols=194  Identities=17%  Similarity=0.161  Sum_probs=146.5

Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEecC-CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc---eeeeeecccccC-
Q 001490          790 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-  864 (1068)
Q Consensus       790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~~~~h~~~-  864 (1068)
                      |.++++|.-..|+|||+........+.. ....++++.-+...|.++++|..||.|++||.+..   ..+...+.|++. 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            4444444457899999998777776653 44577888776657899999999999999998754   357778889988 


Q ss_pred             -eEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCC
Q 001490          865 -VTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE  942 (1068)
Q Consensus       865 -V~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~  942 (1068)
                       |..+.+-+.|-- |++|+.||.|++||+..........+   ..+...++..+++..+++...+|+|+.+.|+||++. 
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS- 1333 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecC-
Confidence             999999887754 99999999999999987432221111   122222235899999999999999777999999986 


Q ss_pred             ceeeeee------ccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc
Q 001490          943 LTCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE  987 (1068)
Q Consensus       943 ~~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~  987 (1068)
                      |+.+..+      .....+.+.+++|.|---+||+|+.|.+|.||.....+
T Consensus      1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            3333221      12235678999999999999999999999999887654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.7e-15  Score=153.72  Aligned_cols=197  Identities=21%  Similarity=0.203  Sum_probs=151.8

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeee
Q 001490          823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL  902 (1068)
Q Consensus       823 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~  902 (1068)
                      .+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.++....   -
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~  222 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R  222 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence            7899999 89999999999999999998888888888899999999999999999999999 79999999973211   1


Q ss_pred             ecCCCcccCCCCceEEEEeeCC---CE-EEE-E-eCCeEEEEECCCcee-----eeeeccCCCcCEEEEEEecCCCEEEE
Q 001490          903 QTPDGVMTLAPSETHIQFHKDQ---TR-FLL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT  971 (1068)
Q Consensus       903 ~~~~~~~~~~~~v~~~~~spdg---~~-la~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t  971 (1068)
                      ..+.+..   .....+.|+.|+   .+ +++ . .-+.|..|++.....     .++ .......|++++.|+||++++.
T Consensus       223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEE
Confidence            1111211   257788999988   33 333 2 334566665542221     111 1122458999999999999999


Q ss_pred             EECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 001490          972 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038 (1068)
Q Consensus       972 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~ 1038 (1068)
                      |+.||.|.|++..+.+.+.-..       ..|.  ..++.+.|+| |.+.+++.+.|.+.++..++-
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk-------~aH~--~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK-------EAHL--GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh-------hhhe--eeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence            9999999999999988875444       1122  4567899999 789999999999999999875

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=4.7e-14  Score=156.85  Aligned_cols=250  Identities=17%  Similarity=0.168  Sum_probs=181.3

Q ss_pred             CCcceEEEEECC-CCCEEEEEeCCcEEEEEEccCCCcc--cc-eEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          371 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       371 h~~~V~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~~-~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      ....|.|+.|+| +..++|.|+.+|.|.+||+..+...  .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            456899999999 5677888899999999999887652  11 1123468889999999765432248999999999999


Q ss_pred             ECCCCce------eeEec------cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc--------eEEecCCCC
Q 001490          447 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL  506 (1068)
Q Consensus       447 d~~~~~~------~~~~~------~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~--------~~~~~~~~~  506 (1068)
                      +++.-..      .....      .-...++++.|.+. +-..++.|+++|.|..-+......        ...+..|.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            8763322      11111      12345778888765 446799999999988733222211        225566788


Q ss_pred             cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEeccccccCCeEEEEEecCCCEE-EEEECCCeEEEEEcC
Q 001490          507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN  584 (1068)
Q Consensus       507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~  584 (1068)
                      +|.++.++|-+..++..+.    |.+++||... ...++..+..+.   ..+.+++|+|...-+ +++..||.|.+||+.
T Consensus       400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            9999999998776665543    7789999987 566666666655   679999999987655 457789999999997


Q ss_pred             CCe--EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          585 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       585 ~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      ...  ++.+....  ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus       473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            543  34443333  345677888999999999999999999999754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=1e-13  Score=157.84  Aligned_cols=256  Identities=13%  Similarity=0.110  Sum_probs=181.4

Q ss_pred             ecCCCcceEEEEECCCC-CEEEEEeCCcEEEEEEccCC----CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc
Q 001490          368 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  442 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg-~~las~~~d~~i~vwd~~~~----~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~  442 (1068)
                      +..|+..|..++.+++. .++++|+.||+|++||...-    ...+...++.....++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            66788888898888764 99999999999999998642    22333334444567899999999999  6888899999


Q ss_pred             EEEEECCCC--ce-----eeEecc-CCCcEEEE-eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEe--cCCCCcEEEE
Q 001490          443 IKVWDAVTG--SR-----TYSFEG-HGAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRM  511 (1068)
Q Consensus       443 i~iwd~~~~--~~-----~~~~~~-h~~~v~~i-~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~  511 (1068)
                      |++.++...  +.     .+.... ..+.+.++ ++........|+.+..-+.|..||.+........  ....+.|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            999998752  11     111111 22334444 3332222237888999999999999887765543  4455689999


Q ss_pred             EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC---CCEEEEEE--CCCeEEEEEcCCC
Q 001490          512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV  586 (1068)
Q Consensus       512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~  586 (1068)
                      +.+|-+.++++|..    .|.+.+||++=+.++.......  ..++..+..+|-   ....++++  ..+.|.+|++.+|
T Consensus      1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            99999999999986    6679999999888887766443  356776666654   34555543  5788999999999


Q ss_pred             eEEEEEeCCCCC-----------------CCCceEEEecCCCEEEEEECCCeEEEEECCCCc
Q 001490          587 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN  631 (1068)
Q Consensus       587 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  631 (1068)
                      .....+......                 ......++...+..+.+|+.|..|+.||.....
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            777666443110                 011223344456788999999999999988653

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.63  E-value=1e-13  Score=133.10  Aligned_cols=243  Identities=14%  Similarity=0.154  Sum_probs=174.4

Q ss_pred             CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEccCce--e--EEEe-----cCCCCCeEEEEEeCCCCCEEEEEECCC
Q 001490          776 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS  842 (1068)
Q Consensus       776 ~~~~~v~~l~~s~dg~----~l~~~~dg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg  842 (1068)
                      .|..+++.+.|.|+.+    -+...++..+|+|.+...+  .  ...+     ..+..++++..|..-+.++|.+.+-|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            3889999999999874    2334456789999987422  1  1111     235568999999987889999999999


Q ss_pred             eEEEEEcCCce---eeeeecccccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEE
Q 001490          843 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  918 (1068)
Q Consensus       843 ~v~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  918 (1068)
                      +..|||++++.   ....+-+|..+|..++|+.++ +.+|+.|.||.|+++|+..-+-.+ .....+..+    .+...+
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~p~~~----~pLlRL  248 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYEDPSPS----TPLLRL  248 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecCCCCC----Ccceee
Confidence            99999999873   356788899999999999865 678999999999999998754222 222222222    357888


Q ss_pred             EEeeCC-CEEEE-E-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecC-CCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490          919 QFHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS  994 (1068)
Q Consensus       919 ~~spdg-~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~dg~v~vwd~~~~~~~~~~~~  994 (1068)
                      +|++.. +++|+ . ....|.|.|++.......-+.+|.+.|.+++|.|. ...|.|++.|..+.+||+.+--......+
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            888865 56666 4 44679999998766554457789999999999995 47899999999999999986433111111


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeCC
Q 001490          995 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1028 (1068)
Q Consensus       995 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d 1028 (1068)
                      ......   +..+  --+.|+|..++-++.+...
T Consensus       329 ilay~a---~~EV--Nqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  329 ILAYTA---GGEV--NQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             hhhhhc---ccee--eeeeecccCCCEEEEEecC
Confidence            111111   1222  2477887667777776644

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=5.6e-14  Score=146.11  Aligned_cols=169  Identities=11%  Similarity=0.150  Sum_probs=127.2

Q ss_pred             ecCCCEEEEEe-CCeEEEEEccCceeEEEec----CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC----------
Q 001490          787 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------  851 (1068)
Q Consensus       787 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------  851 (1068)
                      .+.+--+..+- -|.+.+.|....+..+.+.    -....++|+.|-|.+...++++-.+|.+++||..-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            35666666665 4888888875422222111    12368999999996667777788999999997521          


Q ss_pred             ----c--------------eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490          852 ----S--------------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  913 (1068)
Q Consensus       852 ----~--------------~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  913 (1068)
                          +              .++..+.--.+.|...+|||||++||+.+.||.++|+|+.+.+     ++...+...   +
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G  333 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G  333 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence                1              1122222234578889999999999999999999999999844     344444444   3


Q ss_pred             CceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEec
Q 001490          914 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC  964 (1068)
Q Consensus       914 ~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~  964 (1068)
                      ...|++|||||++|++ |.|.-|.||.+..++.+.. -.+|...|+.++|.|
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence            7899999999999999 6889999999999988875 678999999999997

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.62  E-value=9.9e-14  Score=135.34  Aligned_cols=231  Identities=13%  Similarity=0.070  Sum_probs=174.2

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      +.-.++|+|.||++|+. .+|++-....|.||.......-.                ....+..|...|+.+.|+|.+..
T Consensus         7 ~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snr   69 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNR   69 (361)
T ss_pred             eeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCc
Confidence            33445999999999997 67888888899999987665211                11237789999999999999999


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee----eEeccCCC
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGA  462 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~  462 (1068)
                      |++|+.|..-+||....+...++...+..+....+++.|+|.+.  .+++|+.-..|.||-.+...-=    +.-+.+..
T Consensus        70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirS  147 (361)
T KOG1523|consen   70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS  147 (361)
T ss_pred             eeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence            99999999999999966666666667888999999999999999  7999999999999876644321    22245678


Q ss_pred             cEEEEeeeecCCccEEEEEEcCCcEEEEeC-----CC-------------CCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLY-----DS-------------LGARVDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~-----~~-------------~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      .|.++.|++  ++-+|++|+.|+..+++..     +.             +.....+....+.+..+.|+|+|..|+-.+
T Consensus       148 tv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  148 TVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             ceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            899999988  5568999999999999853     11             111223335567899999999999999887


Q ss_pred             eCCCCceeEEEEeCCCCe-eeeEEeccccccCCeEEEEEecC
Q 001490          525 TSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTA  565 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~  565 (1068)
                      .    +..+.+-|..... .+......+   -+..++.|-.+
T Consensus       226 H----ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise  260 (361)
T KOG1523|consen  226 H----DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE  260 (361)
T ss_pred             C----CCceEEeecCCCchhccchhhcc---CCceeeEeecC
Confidence            6    5568888876654 233333222   45666666544

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=7.6e-14  Score=156.10  Aligned_cols=297  Identities=15%  Similarity=0.200  Sum_probs=206.0

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC--CCC
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS  385 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp--dg~  385 (1068)
                      +.......+.|+|-.. .++++.....|+|||.+.++.+..+     |.+.           .....|+.+.+-.  |..
T Consensus      1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F-----~n~~-----------~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGF-----DNGA-----------FPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred             cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccc-----cCCC-----------CCCCccceeeeecccchh
Confidence            3344577889999887 5577776688999999999887542     1111           1345788888865  567


Q ss_pred             EEEEEeCCcEEEEEEcc-CC-Cc---ccceEEEccc----cccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          386 LLGVAYSKHIVQLYAYH-GG-SD---ARQQLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~-~~-~~---~~~~~~~~~h----~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      ++.+|+.||.|+||+-- .+ +.   +.....+.++    .+.=.-+.|-....  .|+++|.-..|+|||.........
T Consensus      1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence            89999999999999643 32 11   1111112221    11113456776666  566666688999999998888776


Q ss_pred             ecc-CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc---eEEecCCCCc--EEEEEEccCCCE-EEEEeeCCCC
Q 001490          457 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG  529 (1068)
Q Consensus       457 ~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~d~~~-l~~~~~~~~~  529 (1068)
                      +.. ....|+++.-.-. .|..+++|..||.|++||.+....   +...+.|...  |..+.+-+.|-. |++++.    
T Consensus      1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred             cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence            643 4455666654433 478999999999999999876543   4456666665  999999887765 888886    


Q ss_pred             ceeEEEEeCCCCeeeeEE--eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC-----CCCCCCc
Q 001490          530 ESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP  602 (1068)
Q Consensus       530 ~~~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~  602 (1068)
                      +|.|++||++.......+  ..|..-.+..+++..++....+++|+. +.|.||++.. +.+..+...     .....+.
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcc
Confidence            555999999875222211  111100124899999999999999988 9999999864 444333221     1234578


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          603 RICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       603 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      +++|+|..-++|+|+.|.+|.||.....
T Consensus      1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeeecchhHhhhhccCCceEEEeecCCc
Confidence            9999999999999999999999987654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=6.8e-12  Score=141.76  Aligned_cols=277  Identities=15%  Similarity=0.130  Sum_probs=189.5

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCC--cceEEEEECCCCCEEEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG--VSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~spdg~~las  389 (1068)
                      .+.+.++-.  ++|+| |+ .-.|.+||+.++..+....             +...+..|.  ..+.     -.+.++++
T Consensus         9 ~l~~~~~~~--~~lla-g~-gp~i~~yd~~s~~li~~~~-------------~~~~~~~H~~e~~~~-----l~~~~~v~   66 (967)
T KOG0974|consen    9 PLNLPQLVS--DYLLA-GS-GPEILVYDLSSGCLIRHLI-------------QSKILEVHRGEGKVK-----LLSGKIVT   66 (967)
T ss_pred             cccchhhcc--ceeee-cC-CCceEEeeCCchhHhhhhh-------------hhcccccccccccce-----eccceEEE
Confidence            344444444  34544 33 2679999999998775311             111133340  1111     12344555


Q ss_pred             EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE-EE-E
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-YS-L  467 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~-i  467 (1068)
                      +..-+.+..=+..-.       .+..-.+.|....+.-+.+  .++.+..+..+.+||...+.....+....... .+ +
T Consensus        67 ~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~  137 (967)
T KOG0974|consen   67 CAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSL  137 (967)
T ss_pred             EEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEE
Confidence            543333333222211       1112233444566666677  57777778899999998887776664322211 11 1


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeee-E
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-T  546 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~  546 (1068)
                      -+-.+.+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++-||+++++++.    |..+++|++++++... .
T Consensus       138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~  213 (967)
T KOG0974|consen  138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCT  213 (967)
T ss_pred             EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCcc
Confidence            1222345568999999999999998855555578899999999999999999999997    6679999999988776 5


Q ss_pred             EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001490          547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  626 (1068)
Q Consensus       547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  626 (1068)
                      .-+|.   ..+..+.|.|+  .++++++|-+.++|+.+ +..+..+..|.. ..+..++..++....++++.|+.+++|+
T Consensus       214 ~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  214 GFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             ccccc---ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhh
Confidence            56666   89999999998  89999999999999764 455556666554 4689999999999999999999999999


Q ss_pred             CCCC
Q 001490          627 TPES  630 (1068)
Q Consensus       627 ~~~~  630 (1068)
                      +...
T Consensus       287 l~~r  290 (967)
T KOG0974|consen  287 LNGR  290 (967)
T ss_pred             hhcc
Confidence            8753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.3e-14  Score=162.08  Aligned_cols=231  Identities=18%  Similarity=0.194  Sum_probs=151.4

Q ss_pred             CCccceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490          297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  374 (1068)
Q Consensus       297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  374 (1068)
                      +......+.+..|...+...+|||||++++.++..+  ..|.+||+.+++......                 +.+|   
T Consensus       190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~---  249 (429)
T PRK01742        190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH---  249 (429)
T ss_pred             CCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc---
Confidence            334445677888888999999999999664443322  469999998876432111                 2233   


Q ss_pred             eEEEEECCCCCEEEEEe-CCcEEEE--EEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          375 VNRVVWSPDGSLLGVAY-SKHIVQL--YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       375 V~~~~~spdg~~las~~-~d~~i~v--wd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      ...++|||||++|++++ .+|.+.|  ||+.+++. .   .+..+...+...+|+|||+. ++++...++...||++...
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECC
Confidence            34689999999998875 5776555  56666542 2   45567777889999999995 3334456778888876432


Q ss_pred             -ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          452 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       452 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                       .....+ .+..  ....|+  +||+.|+..+.++ +.+||+.++........  .....+.|+|||++++.++.++. .
T Consensus       325 ~~~~~~l-~~~~--~~~~~S--pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~  395 (429)
T PRK01742        325 GGGASLV-GGRG--YSAQIS--ADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-G  395 (429)
T ss_pred             CCCeEEe-cCCC--CCccCC--CCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-c
Confidence             222333 3433  344554  4778888887765 55599887765433222  13356789999999999875322 2


Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  565 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  565 (1068)
                      ..+.+++ .+|..++.+..+.   +.+...+|+|-
T Consensus       396 ~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~  426 (429)
T PRK01742        396 KVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY  426 (429)
T ss_pred             eEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence            2233344 3577777787766   67888889874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=6e-15  Score=151.48  Aligned_cols=296  Identities=14%  Similarity=0.140  Sum_probs=223.8

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      |.+|.+.|..|.|...|..|++|+.|..|.+||+.++.....  -..+|...|....|-|.....-+++++.||.+++=.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            778999999999999999999999999999999998875443  235899999988898875444799999999999876


Q ss_pred             CC-CCcee--eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec---CCCC---cEEEEEEccCCC
Q 001490          448 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGL---GCTRMAYSANGR  518 (1068)
Q Consensus       448 ~~-~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~---~i~~~~~s~d~~  518 (1068)
                      +. ++.+.  ..+..|.++|.-++.-|. ....|.+++.|+.+.-.|++.......+.   ....   ....++..|...
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            54 34332  455679999999988764 34578999999999999988766543322   1222   467888888666


Q ss_pred             -EEEEEeeCCCCceeEEEEeCCCCee------eeEEecccc---ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC--C
Q 001490          519 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V  586 (1068)
Q Consensus       519 -~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~  586 (1068)
                       .+++++.    +.++++||.+.-..      +.++..+..   ..-.|++++|+.++.-+++...|-.|+++...-  |
T Consensus       295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence             5666654    66789998764221      233332221   124589999998888899999999999995442  2


Q ss_pred             ----------eEEEE-EeCCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490          587 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  654 (1068)
Q Consensus       587 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  654 (1068)
                                ..+.. +++|.....|..+-| -|...++++|++=|.|.||+-.+++.+..+.+...-|+|+.-+     
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH-----  445 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH-----  445 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence                      12222 556655555777765 5788899999999999999999999999999888888888776     


Q ss_pred             cccccccCeeeecCCCCCCcccceeecccccceeeccc
Q 001490          655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  692 (1068)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~  692 (1068)
                                       |--..|++.+-|..|+||...
T Consensus       446 -----------------P~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  446 -----------------PHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             -----------------CCCchhhccCCccceeeecCC
Confidence                             445678899999999999863

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.61  E-value=9.5e-14  Score=154.45  Aligned_cols=253  Identities=17%  Similarity=0.202  Sum_probs=184.5

Q ss_pred             CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE--EE
Q 001490          311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL--LG  388 (1068)
Q Consensus       311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~--la  388 (1068)
                      .+|.|++|+|....++|.|..+|.|.+||+..+.......             -......|..+|..+.|-.+-.-  ++
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~~~v~~vvW~~~~~~~~f~  309 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHSEPVTAVVWLQNEHNTEFF  309 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCCcCeEEEEEeccCCCCceE
Confidence            4899999999999999999999999999998876531000             01124568999999999876544  99


Q ss_pred             EEeCCcEEEEEEccCCCcccceEEEc---------cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE---CCCCc----
Q 001490          389 VAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS----  452 (1068)
Q Consensus       389 s~~~d~~i~vwd~~~~~~~~~~~~~~---------~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd---~~~~~----  452 (1068)
                      +++.||.|..|+++.-........+.         .-...+++++|.+.... .++.|+.+|.|.-=+   ...+.    
T Consensus       310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~  388 (555)
T KOG1587|consen  310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSY  388 (555)
T ss_pred             EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccc
Confidence            99999999999886543311110111         11236899999988776 788899999887733   22222    


Q ss_pred             -eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC-CCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          453 -RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       453 -~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                       .+..+..|.++|+++.++|-.. ..+++++ |-++++|.-. .......+..+...+++++|||-...++++.   +++
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~  463 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGD  463 (555)
T ss_pred             cccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCC
Confidence             1335567899999999877533 2444444 9999999888 6666777777777899999999877666654   347


Q ss_pred             eeEEEEeCCCCe--eeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC
Q 001490          531 SFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  585 (1068)
Q Consensus       531 ~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~  585 (1068)
                      |.|.+||+....  ++.+..-..   .....+.|+++|+.+++|...|++.+|++..
T Consensus       464 G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  464 GNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            889999987543  333332222   5677888999999999999999999999864

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=1.5e-11  Score=139.02  Aligned_cols=200  Identities=15%  Similarity=0.166  Sum_probs=152.6

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      .|....+.-+.+ .++.++.+..+.|||...+.......       .+.   ...     -....-+.++++.-++++|+
T Consensus        89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~e---r~~-----l~~~~~~g~s~~~~~i~~gs  152 (967)
T KOG0974|consen   89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDE---RCT-----LYSSLIIGDSAEELYIASGS  152 (967)
T ss_pred             cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCc---eEE-----EEeEEEEeccCcEEEEEecc
Confidence            344455556665 56778888999999998877664310       000   000     01233355788888999999


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeee
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH  470 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~i~~~  470 (1068)
                      .-+.|.+|+....+.   ...+.+|.+.|.++.|+.||+  ++++.++|.++++|++++++... ..-+|.+.|..++|.
T Consensus       153 v~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~  227 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL  227 (967)
T ss_pred             ccccEEEEeccccCC---cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence            999999999983321   115789999999999999999  89999999999999999998776 667899999999997


Q ss_pred             ecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC-CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  541 (1068)
Q Consensus       471 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~  541 (1068)
                      +.    .+++++.|.+.++|+.+..... .+..|. ..+..++..++...+++++.    |+.+++||....
T Consensus       228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR  290 (967)
T ss_pred             cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence            63    8999999999999976554433 555544 47899999999888888876    667999997653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=8.6e-13  Score=130.75  Aligned_cols=288  Identities=16%  Similarity=0.157  Sum_probs=190.0

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CCEEEEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA  390 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~~las~  390 (1068)
                      .+..++|++--- -+|++..|-+|++||-+......-                   -......|+|++|-|. ++-|++|
T Consensus       100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence            577889988543 457888999999999876322110                   1123468999999996 5678888


Q ss_pred             eCCcEEEEEEccCCCcc-----------cceEEEccccccEEEEEEcCCCCcEEEEEEe-CCCcEEEEECCCCceeeEec
Q 001490          391 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       391 ~~d~~i~vwd~~~~~~~-----------~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      +..| |.+|....-...           .+...-.+| .+|++|.|.+||.  .+++++ .|..|.|||..+|..+.-..
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence            8777 999987532111           111223455 6899999999999  677766 46689999999998876554


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      ...+.+.-+.|+|  |+.+|++++-|+..++|+....-.........+.|...+|+|+|++|+.....   ...++-...
T Consensus       236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f  310 (445)
T KOG2139|consen  236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF  310 (445)
T ss_pred             cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence            4567788888977  77799999999999999655444444444445589999999999988765531   222322211


Q ss_pred             CC--Cee-----------e------eEEeccccccCCeEEEEEecCCCEEEEEECC--------CeEEEEEcCCCeEEEE
Q 001490          539 SE--GAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT  591 (1068)
Q Consensus       539 ~~--~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~  591 (1068)
                      ..  +..           +      ....+...-.+.+.+++|.|.|+++++.-..        +.|.+||.+..-.+..
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence            11  100           0      0111111123678899999999999986433        3467788766544443


Q ss_pred             Ee-CCCCCCCCceEEEec---CCCEEEEEECCCeEEEEECC
Q 001490          592 ID-AGGGLPENPRICFNK---NGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       592 ~~-~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      .. +.........++|+|   ++.+|.++=+.|.+.-|++.
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            31 111112245677776   67788888788888777654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=2.5e-12  Score=125.77  Aligned_cols=239  Identities=14%  Similarity=0.203  Sum_probs=170.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccc--cEEEEEEcCCCCcEEEEEEeC-----CCcEEEE
Q 001490          374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQISVITCGD-----DKTIKVW  446 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~--~v~~l~~s~d~~~~~l~s~~~-----d~~i~iw  446 (1068)
                      ...+++|+.|...+++|..+| .+||+++--+...   .-..+.+  .+..|-|  -.+.+.|+-|+.     -..|.||
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            455699999999999998887 8999987532211   1111222  2222333  234323443333     2469999


Q ss_pred             ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC-CCCceEEecCCC--CcEEEEEEccCCCEEEEE
Q 001490          447 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSC  523 (1068)
Q Consensus       447 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~d~~~l~~~  523 (1068)
                      |=...+++.++. ...+|.++.+..+    .|++. ..+.|.+|.+. +.+....+....  ....+++-+.+..+|+.-
T Consensus        81 DD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   81 DDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             ecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence            977778888775 7788999998652    44443 46789999987 455555544433  234444433344444443


Q ss_pred             eeCCCCceeEEEEeCCCCee--eeEEeccccccCCeEEEEEecCCCEEEEEECCCe-EEEEEcCCCeEEEEEeCCCCCCC
Q 001490          524 GTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPE  600 (1068)
Q Consensus       524 ~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~  600 (1068)
                      +   -..|.|.+-|+..-+.  ...+..|.   ..|.+++.+-+|..++++|..|+ |||||..+|+.+..+........
T Consensus       155 g---~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~  228 (346)
T KOG2111|consen  155 G---FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD  228 (346)
T ss_pred             C---CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence            3   2357899999876554  36677777   99999999999999999999998 79999999999999987666677


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          601 NPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      |.+++|||+..+|+++++.|++.|+.+...
T Consensus       229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            999999999999999999999999998864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-13  Score=157.15  Aligned_cols=366  Identities=12%  Similarity=0.067  Sum_probs=225.3

Q ss_pred             EECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcc---cce
Q 001490          625 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQS  701 (1068)
Q Consensus       625 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~  701 (1068)
                      |+.+ |..+..+..|...+..++.+                     ++++.++++|+.||+|++|+........   ...
T Consensus      1034 W~p~-G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ 1091 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE 1091 (1431)
T ss_pred             CCcc-ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeee
Confidence            4443 45667777777777777776                     5777999999999999999966433221   111


Q ss_pred             eecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCe
Q 001490          702 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  781 (1068)
Q Consensus       702 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  781 (1068)
                      ....  ....++..+...+.+..+++++.||.|++.+++....    ...           .+.+.......  ....-+
T Consensus      1092 ltys--~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv 1152 (1431)
T KOG1240|consen 1092 LTYS--PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVV 1152 (1431)
T ss_pred             EEEe--ccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceE
Confidence            1111  1467889999999999999999999999998875311    000           01111111111  122233


Q ss_pred             eEEEEecC-CC-EEEEEe-CCeEEEEEccCceeEEEec--CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeee
Q 001490          782 PCFALSKN-DA-YLFSAS-GGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  856 (1068)
Q Consensus       782 ~~l~~s~d-g~-~l~~~~-dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  856 (1068)
                      ..-+|... +. .|+.+. .+.|..||+.+.....+++  ...+.|++++.+| .+.++++|+..|.+.+||++-+.++.
T Consensus      1153 ~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1153 SMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred             EeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceee
Confidence            33444433 23 556665 4889999998877766654  3457899999999 89999999999999999999988887


Q ss_pred             eec-ccccCeEEEEEcCCC---CEEEEEe--CCCcEEEEECCCCceeeeeeeecC----CCcc-------cCCCCceEEE
Q 001490          857 KLE-GHSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTP----DGVM-------TLAPSETHIQ  919 (1068)
Q Consensus       857 ~~~-~h~~~V~~l~~spdg---~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~----~~~~-------~~~~~v~~~~  919 (1068)
                      .+. .+..+|..++.+|--   ...++++  ..+.|.+|++.+|......-....    ....       ..........
T Consensus      1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~ 1311 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCG 1311 (1431)
T ss_pred             cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeee
Confidence            765 355778888777643   4555554  467899999999864442211100    0000       0001122233


Q ss_pred             EeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc------EEEEEcCCCcEEEEe
Q 001490          920 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT------LSIHEASNLEVQCRI  992 (1068)
Q Consensus       920 ~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~------v~vwd~~~~~~~~~~  992 (1068)
                      +..-+.++.+ +.|..|+.||....+...-...+.........++.+ ..++.++.--.      ..+=+...+......
T Consensus      1312 ~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~ 1390 (1431)
T KOG1240|consen 1312 VCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKL 1390 (1431)
T ss_pred             cccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhccccccc
Confidence            3333445555 789999999998766552222222222323333322 22332221100      011112222234455


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490          993 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus       993 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
                      .++...+...|-++|..++....+  ..+|++++.||.|.+|.
T Consensus      1391 ~~~~~~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1391 RPGPSDPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccCCCCCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence            566667777778888877766664  57999999999999995

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.60  E-value=3.3e-09  Score=128.39  Aligned_cols=541  Identities=10%  Similarity=0.098  Sum_probs=302.5

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEE----EccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      ..+.|.++.+-++...++.+..+|.|.+.    +..+..    ......-...|.+++||||+.  +|+..+.++++.+.
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m  147 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM  147 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence            45789999999999999999999999999    444432    112334566899999999999  66666667777765


Q ss_pred             ECC---------------C--------CceeeEeccCC------------------CcE----EEEeeeecCCccEEEEE
Q 001490          447 DAV---------------T--------GSRTYSFEGHG------------------APV----YSLCPHAKENIHFIFSI  481 (1068)
Q Consensus       447 d~~---------------~--------~~~~~~~~~h~------------------~~v----~~i~~~~~~~~~~l~s~  481 (1068)
                      +-.               .        |+.-..|.|-.                  +.+    ..+.+++.+||.++++.
T Consensus       148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence            421               0        01111111110                  001    23445567899999988


Q ss_pred             Ec---C---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc-ccc
Q 001490          482 SV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQH  554 (1068)
Q Consensus       482 s~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~-~~~  554 (1068)
                      +.   .   ..+|+|+-+ +..........+--.+++|-|.|+++++... ......|.+|. ++|-....|.-.. ...
T Consensus       228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence            75   3   469999755 3333333333334467899999999998875 33356677777 4554444444321 123


Q ss_pred             CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEE--EEEeCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEECCCCc
Q 001490          555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESN  631 (1068)
Q Consensus       555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~  631 (1068)
                      ..|..+.|++|+..|+..-.|. |.+|...+....  +.+..... ..+..+.|+|. ...|.+.+.+|.+..++..-..
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v  382 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV  382 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence            6799999999999999877655 999999887643  33433322 23456999994 5567777777877776543110


Q ss_pred             eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccc---cCCcccceeecCCcc
Q 001490          632 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF---ARPSECQSLLLPSKV  708 (1068)
Q Consensus       632 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~  708 (1068)
                                     ..++..                  .|+..-.+..-...++++-.+..   +.|.....+.     
T Consensus       383 ---------------~~s~~~------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-----  424 (928)
T PF04762_consen  383 ---------------SRSPGS------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-----  424 (928)
T ss_pred             ---------------EecCCC------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----
Confidence                           000000                  01111111111112233322221   1122222232     


Q ss_pred             ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  788 (1068)
                      -...|.+++|++++..+++...+|.+.+|.++...............+..   .  . ...  .........+..++|..
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~~--~~~~~~~~~~~~~~~~~  496 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL---D--S-MDI--SDSELPLGSLRQLAWLN  496 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc---c--c-ccc--cccccccccEEEEEEeC
Confidence            23579999999999999999999999999976543221111000000000   0  0 000  00001345678889988


Q ss_pred             CCCEEEEEeC----CeEEEEEccCce---eEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee-eeeecc
Q 001490          789 NDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEG  860 (1068)
Q Consensus       789 dg~~l~~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~~~~  860 (1068)
                      +...++....    ..+.++++...+   ...........+..+...+ +...++.-..+|.+...+...... +..|..
T Consensus       497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~  575 (928)
T PF04762_consen  497 DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ  575 (928)
T ss_pred             CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCC
Confidence            8887777653    458888874332   3333333445555565665 444566677899888766554322 223332


Q ss_pred             cccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEE-EEeCCeEEE
Q 001490          861 HSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAI  937 (1068)
Q Consensus       861 h~~~V~~l~~spdg--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~d~~i~v  937 (1068)
                      -...+..+.+....  ..++.-+..|.+++   .+ .     .+.         ..++++++  .+.+|+ +.....++.
T Consensus       576 ~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~f  635 (928)
T PF04762_consen  576 PCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLKF  635 (928)
T ss_pred             CCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEEE
Confidence            22222222232222  14444444554442   21 1     111         13556655  344444 467778888


Q ss_pred             EECCC-ceeeeeeccCC----CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEe
Q 001490          938 YEAEE-LTCLKQWFPIS----SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI  992 (1068)
Q Consensus       938 wd~~~-~~~~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~  992 (1068)
                      .++.. ..........+    ...+   .--..|..|+++-....=.|..+..|.+-.-.
T Consensus       636 v~L~~~~~~l~~~~~~~~~~~de~~---R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~  692 (928)
T PF04762_consen  636 VHLNSSVEDLEIPPDSPENSYDERC---RRVERGSRIVTAVPSDTSVVLQMPRGNLETIY  692 (928)
T ss_pred             EECcCchhhcccccCcccccccccc---ccCccCCEEEEEeCCCceEEEEcCCCchhhhc
Confidence            88871 11111111111    1122   22346778887765555667788888765443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.60  E-value=1.5e-10  Score=118.98  Aligned_cols=529  Identities=13%  Similarity=0.119  Sum_probs=280.2

Q ss_pred             ccCCCccceeeecccCCCCceEEEEcCCCCeEEEE----Ec--CcCcEEEEecCCCcceeeeeeeeeeccccccceeeee
Q 001490          294 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL  367 (1068)
Q Consensus       294 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~----gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (1068)
                      |.-.+.....+.+..|-+-|+...|+|||+.++.+    |+  ..+.+.+.+.+.|+..+..-                 
T Consensus        62 We~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------  124 (668)
T COG4946          62 WEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------  124 (668)
T ss_pred             HHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------
Confidence            33344444556677788889999999999976552    22  23558888888888765311                 


Q ss_pred             ecCCCcceEE-EEECCCCCEEEEEeCCcE----EEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC-
Q 001490          368 VRDPGVSVNR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-  441 (1068)
Q Consensus       368 l~~h~~~V~~-~~~spdg~~las~~~d~~----i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~-  441 (1068)
                      + |  ..-+. .-|+|||+.|++...-.-    -.+|.++....-..    .-.-++.+.+.+- ||.   ++.|-.-- 
T Consensus       125 f-G--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e----~LnlGpathiv~~-dg~---ivigRntyd  193 (668)
T COG4946         125 F-G--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE----PLNLGPATHIVIK-DGI---IVIGRNTYD  193 (668)
T ss_pred             e-c--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee----eccCCceeeEEEe-CCE---EEEccCccc
Confidence            2 2  22333 459999999988754322    23444433221000    1123445555543 443   33331110 


Q ss_pred             -----------cEEEEECCC-Ccee---eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC
Q 001490          442 -----------TIKVWDAVT-GSRT---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL  506 (1068)
Q Consensus       442 -----------~i~iwd~~~-~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  506 (1068)
                                 .=++|--.. |+.-   ..+.+|-....-+      .++..+....+|.=.+|..+-...-..-...-.
T Consensus       194 LP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV------~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt  267 (668)
T COG4946         194 LPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV------GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT  267 (668)
T ss_pred             CcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE------cceEEEEecccCccceEEeccCCchhhhcCCch
Confidence                       123443222 2222   2233332211111      112233334444434443322111111000111


Q ss_pred             cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc---cC-----CeEEEE-Eec-CCCEEEEEECCC
Q 001490          507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---HN-----SVSVVH-FDT-AKDQILAAGDDH  576 (1068)
Q Consensus       507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~~-----~v~~~~-~~~-~~~~l~~~s~dg  576 (1068)
                      ...+-..+.||+.++...     .+-|+++|..+.+..+.--+....   ..     +..-+. |++ +|++++..| .|
T Consensus       268 dYY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RG  341 (668)
T COG4946         268 DYYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RG  341 (668)
T ss_pred             hccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cC
Confidence            223334567999988754     234999999876553332221100   00     011111 222 466776666 46


Q ss_pred             eEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC-eEEEEECCCCceeeeccccccceeeeEEcCCcccc
Q 001490          577 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  655 (1068)
Q Consensus       577 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  655 (1068)
                      ...|.+...+-.++.-.    ...|.-..+..+++-++.|..|| .+-|+|..++..-....                  
T Consensus       342 kaFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------------------  399 (668)
T COG4946         342 KAFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------------------  399 (668)
T ss_pred             cEEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC------------------
Confidence            77777766665554322    23367777777888889999988 89999988763222111                  


Q ss_pred             ccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEE
Q 001490          656 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL  735 (1068)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~  735 (1068)
                                                                           .-+.|.++..+++|+.++++.....+.
T Consensus       400 -----------------------------------------------------~lg~I~av~vs~dGK~~vvaNdr~el~  426 (668)
T COG4946         400 -----------------------------------------------------DLGNIEAVKVSPDGKKVVVANDRFELW  426 (668)
T ss_pred             -----------------------------------------------------CccceEEEEEcCCCcEEEEEcCceEEE
Confidence                                                                 335688899999999888887777777


Q ss_pred             EEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-C----CeEEEEEccCce
Q 001490          736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFK  810 (1068)
Q Consensus       736 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-d----g~i~iwd~~~~~  810 (1068)
                      +.|++..                      ...+.-    +....-|+.++++|+++++|.+- +    ..|+++|+.+++
T Consensus       427 vididng----------------------nv~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         427 VIDIDNG----------------------NVRLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             EEEecCC----------------------CeeEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            7666543                      211111    12567799999999999999986 3    459999999888


Q ss_pred             eEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeee--eecccccCeEEEE----EcCCCCEEEE-EeCC
Q 001490          811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLV----FSDALNILVS-SGGD  883 (1068)
Q Consensus       811 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~----~spdg~~l~s-~s~d  883 (1068)
                      ...... +.+.-.+-||.| |+++|..-+.-    --|..+.+.+.  .+..|+.+-..+-    .||-.+..-. -+.+
T Consensus       481 iy~vTT-~ta~DfsPaFD~-d~ryLYfLs~R----sLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea  554 (668)
T COG4946         481 IYDVTT-PTAYDFSPAFDP-DGRYLYFLSAR----SLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEA  554 (668)
T ss_pred             EEEecC-CcccccCcccCC-CCcEEEEEecc----ccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccc
Confidence            765443 444556788999 88888765431    11111111111  1111222211110    1222222111 1233


Q ss_pred             CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEE-----------E--E--eCCeEEEEECCCceeeee
Q 001490          884 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-----------L--V--HETHLAIYEAEELTCLKQ  948 (1068)
Q Consensus       884 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-----------~--~--~d~~i~vwd~~~~~~~~~  948 (1068)
                      +.+-+=+++..    ..+++..++.      -.+++=-.+|+.+.           .  +  ..|.+.+||+++.+.-..
T Consensus       555 ~e~dle~ie~r----~eP~pVee~d------Y~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~  624 (668)
T COG4946         555 GEVDLEGIEDR----VEPFPVEEGD------YRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY  624 (668)
T ss_pred             cceehhhhccc----ccccccCccc------eeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH
Confidence            33322222210    1111211111      11222222332221           1  1  246788999887654321


Q ss_pred             eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001490          949 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN  985 (1068)
Q Consensus       949 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~  985 (1068)
                           ...++++..|+||+.+.. -.||.+++++++.
T Consensus       625 -----k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek  655 (668)
T COG4946         625 -----KDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK  655 (668)
T ss_pred             -----hcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence                 357889999999999988 6899999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=6.5e-13  Score=131.58  Aligned_cols=259  Identities=12%  Similarity=0.119  Sum_probs=165.5

Q ss_pred             ccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001490          711 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  790 (1068)
Q Consensus       711 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  790 (1068)
                      ..|.+++|-|.+...++.+..+.|.+|..+......       -.++..   +..+...  +..++| ..|+++++.+||
T Consensus       141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~~-------r~~~~~---s~~~~qv--l~~pgh-~pVtsmqwn~dg  207 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN-------RNIRMM---STHHLQV--LQDPGH-NPVTSMQWNEDG  207 (445)
T ss_pred             cceeEEEeccCCcceeeeeecceeEEEEcCcccccc-------cccccc---cccchhh--eeCCCC-ceeeEEEEcCCC
Confidence            457888888877767777777788899865432100       001100   1111111  223345 789999999999


Q ss_pred             CEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEE
Q 001490          791 AYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL  868 (1068)
Q Consensus       791 ~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l  868 (1068)
                      ..+++++  +..|.|||..++..+.......+.++-+.||| |+.+|.+++-|+..++|+.....-.....--.+.|...
T Consensus       208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqta  286 (445)
T KOG2139|consen  208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTA  286 (445)
T ss_pred             CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeee
Confidence            9999998  57899999999887766655667899999999 89999999999999999554332222233345589999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcee----------eeeee------ecCCCcccCCCCceEEEEeeCCCEEEEEeC
Q 001490          869 VFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVHE  932 (1068)
Q Consensus       869 ~~spdg~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~------~~~~~~~~~~~~v~~~~~spdg~~la~~~d  932 (1068)
                      +|+|+|++|+.+.... -++|.+.-.+..          ....+      ....+.....++..+++|.|.|.+||+...
T Consensus       287 cWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK  365 (445)
T KOG2139|consen  287 CWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK  365 (445)
T ss_pred             eecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence            9999999877655433 345554321100          00011      111111112257899999999999999533


Q ss_pred             C---------eEEEEECCCceeeeeeccCC--CcCEEEEEEec---CCCEEEEEECCCcEEEEEcC
Q 001490          933 T---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       933 ~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~~~dg~v~vwd~~  984 (1068)
                      +         .|.+||....-.+.-.+.+-  ......++|.|   +|++|..+=+.|.+.-|++.
T Consensus       366 g~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  366 GQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            2         36667766443333222121  23355677776   67777777777877776654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=9.3e-13  Score=148.53  Aligned_cols=238  Identities=10%  Similarity=0.111  Sum_probs=157.8

Q ss_pred             CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC---CcEEEEEEccCCCcccc
Q 001490          333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  409 (1068)
Q Consensus       333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~  409 (1068)
                      ..|.+||...+....                    +..+...+.+.+|||||+.||..+.   +..|.+||+.+|+..  
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--  236 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--  236 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--
Confidence            368888887654332                    3346678999999999999997643   457999999887532  


Q ss_pred             eEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC-Cc
Q 001490          410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK  486 (1068)
Q Consensus       410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~  486 (1068)
                        .+....+.+..++|+|||+. ++++.+.++  .|++||+.+++... +..+...+....|+|  ||+.|+..+.+ +.
T Consensus       237 --~l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~  310 (429)
T PRK03629        237 --QVASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP--DSQNLAYTSDQAGR  310 (429)
T ss_pred             --EccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC--CCCEEEEEeCCCCC
Confidence              22233344557899999995 233334444  59999998887644 444445566777765  77788776654 45


Q ss_pred             EEEE--eCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          487 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       487 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      ..+|  |+.++.. ..+...........|+|||++++..+..+ +...|++||+.+++.. .+...    .......|+|
T Consensus       311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~-~Lt~~----~~~~~p~~Sp  383 (429)
T PRK03629        311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQ-VLTDT----FLDETPSIAP  383 (429)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeE-EeCCC----CCCCCceECC
Confidence            4555  5555433 23333344456789999999998876432 3567999999888654 33321    2234678999


Q ss_pred             CCCEEEEEECCCe---EEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          565 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       565 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      ||++|+.++.++.   ++++++ +|.....+..+.  ..+...+|+|
T Consensus       384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            9999999887764   677777 455555555432  3467788886

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=2.5e-14  Score=148.67  Aligned_cols=246  Identities=13%  Similarity=0.189  Sum_probs=170.9

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      ...+.|.||++-|.|++|+.||. +|++||.|-.+.|||....+.++.                  +-+||.+.|.++.|
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKF  101 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKF  101 (758)
T ss_pred             chhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEee
Confidence            45567899999999999999998 889999999999999987776654                  25689999999999


Q ss_pred             CC--CCCEEEEEeCCcEEEEEEccCCCc-------ccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          381 SP--DGSLLGVAYSKHIVQLYAYHGGSD-------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       381 sp--dg~~las~~~d~~i~vwd~~~~~~-------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      -|  +.+.+++|..|..|+++|+...+.       ..+...+..|...|..++-.|++.. .+.+++.||+|+-+|++..
T Consensus       102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCC
Confidence            99  578899999999999999985221       2222345679999999999999965 8999999999999999753


Q ss_pred             ce-e---------eEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEE-----ecCCCCcEEEEE-Ecc
Q 001490          452 SR-T---------YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSA  515 (1068)
Q Consensus       452 ~~-~---------~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~  515 (1068)
                      .. .         ..+...--...++.++|. +..+|+.|+.|-..++||.+.......     .........|+. |+|
T Consensus       181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p  259 (758)
T KOG1310|consen  181 HVCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP  259 (758)
T ss_pred             ccCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence            21 1         111111123456777776 446999999999999999532211110     001111122222 122


Q ss_pred             CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490          516 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  592 (1068)
Q Consensus       516 d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  592 (1068)
                      .+-    ..              ..|.....    .   ..++-+.|+|+|..++..-....|+++|+..++....+
T Consensus       260 ~hl----kn--------------~~gn~~~~----~---~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  260 GHL----KN--------------SQGNLDRY----I---TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ccc----cC--------------cccccccc----e---eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            211    00              01110000    0   23667899999998888777778999999987765544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.4e-12  Score=148.39  Aligned_cols=237  Identities=13%  Similarity=0.073  Sum_probs=162.0

Q ss_pred             CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC---CcEEEEEEccCCCcccc
Q 001490          333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  409 (1068)
Q Consensus       333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~  409 (1068)
                      ..|.+||...+....                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            378888876544322                    5567889999999999999998764   468999999987632  


Q ss_pred             eEEEccccccEEEEEEcCCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CC-
Q 001490          410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG-  485 (1068)
Q Consensus       410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg-  485 (1068)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |++||+.++.. ..+..+........|+|  ||+.|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence              34556677889999999995 3445555554  77889887765 45665666666677755  7777777664 33 


Q ss_pred             -cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          486 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       486 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                       .|.++|+....... +......+....|+|||+.|+..... .+...|.+||+.++.. +.+.. .   ..+....|+|
T Consensus       314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp  386 (435)
T PRK05137        314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP  386 (435)
T ss_pred             CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence             57777876654433 32234456678899999999987643 2356799999866543 33322 2   2466789999


Q ss_pred             CCCEEEEEECC------CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          565 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       565 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      ||+.|+..+.+      ..++++|+..+.. ..+...+   .+...+|+|
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence            99998875542      3688888876554 3444222   256667776

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=1.9e-12  Score=126.58  Aligned_cols=242  Identities=12%  Similarity=0.151  Sum_probs=169.2

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEeCCCCCEEE-EEECC------CeEEEEEcC
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNAR  850 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~~  850 (1068)
                      ....++|..|...+++|.+...+||+.+..+.......+.  -.+..+-|-.   ++|| +|+.+      ..|.|||=.
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence            4456999999999999999999999998654432222222  2334444432   3444 44433      489999966


Q ss_pred             CceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-
Q 001490          851 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-  929 (1068)
Q Consensus       851 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-  929 (1068)
                      ..+++.++. ...+|.++.+++|  .+|+.- .+.|+||.....-. ....+.+.....    ...+++=...-.+||. 
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEcC
Confidence            667777776 6788999999876  455443 56699999985321 112222222111    1222222223344555 


Q ss_pred             E-eCCeEEEEECCCcee-eeeeccCCCcCEEEEEEecCCCEEEEEECCCc-EEEEEcCCCcEEEEeccccccCCCCccCc
Q 001490          930 V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLH 1006 (1068)
Q Consensus       930 ~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1068)
                      | .-|.|+|-|+...+. .......|...|.+++.+-+|.++||+|..|+ |||||..+|+.+.+++.+.        ..
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~--------d~  226 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV--------DR  226 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC--------ch
Confidence            4 458899999987665 33457789999999999999999999999998 8999999999999998443        22


Q ss_pred             ccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001490         1007 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus      1007 ~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
                      ....+++|+| +..+|+++++.|+|++|.+.+....
T Consensus       227 A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  227 ADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTENT  261 (346)
T ss_pred             heEEEEEeCC-CccEEEEEcCCCeEEEEEeecCCCC
Confidence            2345899999 7899999999999999999775533

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=4.4e-15  Score=162.11  Aligned_cols=350  Identities=18%  Similarity=0.182  Sum_probs=222.8

Q ss_pred             cccCCCcch-hHHHHHHHhhcccchhcccCCCCCCCCCcceeecccCCCCCCccCCCCCCCCCCCCCCCCCCcccccCCc
Q 001490          137 KLKFPSIKR-QRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSM  215 (1068)
Q Consensus       137 ~~~~~~~p~-~rL~~ll~qa~~~Q~~~c~~~~~~~~~~sl~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s~  215 (1068)
                      +.+.|..|+ .-|..|+.|++++|+.+|+.|.+..++.|||..|.|+.               |.+..+++-+...+.  
T Consensus      1003 gq~~~~~p~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl-- 1065 (1516)
T KOG1832|consen 1003 GQMTPANPERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRL-- 1065 (1516)
T ss_pred             ccCCCcCCCCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcc--
Confidence            445555553 35999999999999999999998888889999999986               555555431110000  


Q ss_pred             ccccccccccccCCCCCCccccccCCCCCCCCcCCccccccCCCCceeeecCc--cCCCCCccCCCCccccccccccCCC
Q 001490          216 LTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV--SLKNIPDYSPKSSLKKEMFQSFGET  293 (1068)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~p~~--~~~s~~~fsP~~s~~~~~~~~~~~~  293 (1068)
                        ..+                                          ..++..  .|+.       .-..+.+|..    
T Consensus      1066 --~~r------------------------------------------el~~~y~gV~g~-------~~dr~~IFSR---- 1090 (1516)
T KOG1832|consen 1066 --GTR------------------------------------------ELQSFYSGVHGN-------RRDRQFIFSR---- 1090 (1516)
T ss_pred             --cch------------------------------------------hhcCcccccccC-------cccchhhHhh----
Confidence              000                                          000000  0010       1111122222    


Q ss_pred             ccCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCc
Q 001490          294 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  373 (1068)
Q Consensus       294 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  373 (1068)
                            ....++++.|+..-+|++||-+.+ .|++|+..|.|+++++.+|.....                   ...|..
T Consensus      1091 ------Fr~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~S 1144 (1516)
T KOG1832|consen 1091 ------FRSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQS 1144 (1516)
T ss_pred             ------cccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------cccccc
Confidence                  123466788999999999999987 679999999999999999998876                   556999


Q ss_pred             ceEEEEECCCCCEEEEEeCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          374 SVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      .|+.+.-|-||..+++.+.-  ....+|+..+-.  ...+.+.    .-.++.|+.....  -+.|..-....+||++|+
T Consensus      1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~--~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG--GPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             ccccccccCCcceeeeeccccCchHHHhcccccc--Ccccccc----ccceeehhhhHHH--HHhcccccceEEEecccC
Confidence            99999999999988776443  357899987632  2111222    3457889877553  233333456899999999


Q ss_pred             ceeeEe-cc---CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          452 SRTYSF-EG---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       452 ~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      ..+.++ .+   ....-+...|+|.  ..+++   .||  .+||.+..+.+..+..... ...=.|+|.|..++..+   
T Consensus      1217 ~~l~tylt~~~~~~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred             cHHHHhcCcchhhhhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec---
Confidence            887663 22   1112244456553  33443   233  4699888766665544331 11236899999998864   


Q ss_pred             CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE--CC---------------CeEEEEEcCCCeEEE
Q 001490          528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLT  590 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~d---------------g~i~iwd~~~~~~~~  590 (1068)
                            .|||+++.+.++......     -..+.|+..|+.++..-  .|               ...+-+|......+.
T Consensus      1286 ------EIwD~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ia 1354 (1516)
T KOG1832|consen 1286 ------EIWDMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIA 1354 (1516)
T ss_pred             ------hhhhhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccce
Confidence                  579999988877665533     46678888887766542  00               123445555555666


Q ss_pred             EEeCCCCCCCCceEEEecCCCEEEEEE
Q 001490          591 TIDAGGGLPENPRICFNKNGTLLAVIA  617 (1068)
Q Consensus       591 ~~~~~~~~~~v~~v~~s~~~~~l~~~~  617 (1068)
                      ++....   .+..++-+|...++.+..
T Consensus      1355 Ti~v~R---~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1355 TIPVDR---CLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             eeeccc---chhhhhcCCccceEEEEe
Confidence            665442   255666666666666543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6e-13  Score=150.03  Aligned_cols=233  Identities=14%  Similarity=0.098  Sum_probs=154.2

Q ss_pred             CCCccceeeecccCCCCceEEEEcCCCCeEEEEEc--CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCc
Q 001490          296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  373 (1068)
Q Consensus       296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  373 (1068)
                      .+......+.+..+.+.+...+|||||+.++.+..  .+..|.+||+.+|+....                    ....+
T Consensus       184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~~  243 (429)
T PRK03629        184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFPR  243 (429)
T ss_pred             EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCCC
Confidence            33344445566667778999999999997655432  235799999988865431                    11223


Q ss_pred             ceEEEEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-CC--cEEEEE
Q 001490          374 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK--TIKVWD  447 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~--~i~iwd  447 (1068)
                      .+..++|||||++|+.. +.+|  .|++||+++++..    .+..+...+....|+|||+  .|+..+. ++  .|+++|
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d  317 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVN  317 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEE
Confidence            34568999999999876 3344  5999999887533    3444555678999999999  4544443 34  455557


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      +.++.. ..+..+........|+|  ||++|+..+.+   ..|.+||+.++...... . ........|+|||+.|+..+
T Consensus       318 ~~~g~~-~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~-~~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        318 INGGAP-QRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-D-TFLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             CCCCCe-EEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEEeC-C-CCCCCCceECCCCCEEEEEE
Confidence            776654 34443444455566655  77788776543   35888998877644322 2 12334678999999999888


Q ss_pred             eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      .++. ...++++++ +|.....+.++.   +.+...+|+|
T Consensus       393 ~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp  427 (429)
T PRK03629        393 SQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP  427 (429)
T ss_pred             cCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence            6443 556888887 455556666655   6777788876

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=9.2e-13  Score=138.22  Aligned_cols=284  Identities=14%  Similarity=0.194  Sum_probs=207.2

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      +|...-+.+..||||++++|+|..--.|++||+..-.+...+.+                   ....|.-.-+|.|-..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence            46668889999999999999999999999999987655433211                   23456666677777777


Q ss_pred             EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  467 (1068)
Q Consensus       388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i  467 (1068)
                      +.-..|.+|.+-.-.+ ....  ..+.   ..-.+++++.-.-.  |+.++....|+-.|++.|+.+..+....+.++++
T Consensus       110 v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v  181 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV  181 (703)
T ss_pred             eEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence            7777888877644322 1110  0111   12234555544442  4444445679999999999999998888999999


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC------CC-----cEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW  536 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w  536 (1068)
                      .+++.  ..+|++|+.+|.|..||.+.......+...      .+     .|+++.|+.||-.+++|..    .|.+++|
T Consensus       182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy  255 (703)
T KOG2321|consen  182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY  255 (703)
T ss_pred             eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence            88664  358999999999999999887765544322      22     4899999999999999886    6679999


Q ss_pred             eCCCCeeeeEEeccccccCCeEEEEEecC--CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEE
Q 001490          537 NESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  614 (1068)
Q Consensus       537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  614 (1068)
                      |+++.+++..-.. . ..-+|..+.|.+.  ++.+++ .+...++|||-.+|+....+...   ..++.+|+-|++.+++
T Consensus       256 DLRa~~pl~~kdh-~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  256 DLRASKPLLVKDH-G-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF  329 (703)
T ss_pred             EcccCCceeeccc-C-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence            9999887654332 2 2367888999766  333443 45578999999999999888654   3489999999999999


Q ss_pred             EEECCCeEEEEECCCC
Q 001490          615 VIANENRIKILETPES  630 (1068)
Q Consensus       615 ~~~~dg~i~iwd~~~~  630 (1068)
                      ++-.++.+..|=+...
T Consensus       330 ~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  330 TANESSKMHTYYIPSL  345 (703)
T ss_pred             EecCCCcceeEEcccc
Confidence            9999988887776643

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.55  E-value=7e-13  Score=129.49  Aligned_cols=252  Identities=13%  Similarity=0.125  Sum_probs=183.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEccC---ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-
Q 001490          777 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-  851 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-  851 (1068)
                      ...+|+|.||++|+..+|++.. ..|.||....   .+..+++..|...|+.+.|+| ....|++++.|..-++|...+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            3568999999999999999985 6799998864   457888999999999999999 888999999999999999843 


Q ss_pred             c--eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490          852 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  929 (1068)
Q Consensus       852 ~--~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  929 (1068)
                      +  ++...+..|+...+++.|+|.++.+|+||..+.|.||-++..+  ...+-+.....  +...|.+++|.|++-+|++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkP--irStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKP--IRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCc--cccceeeeeccCCcceecc
Confidence            3  4555666689999999999999999999999999999887632  11111111111  1136999999999999999


Q ss_pred             -EeCCeEEEEECC-----C-------------ceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEE
Q 001490          930 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC  990 (1068)
Q Consensus       930 -~~d~~i~vwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~  990 (1068)
                       +.|+..+|+..-     .             |+...+ .....+.+..+.|+|+|..|+-.+.|+++.+=|........
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E-~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v  242 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE-ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV  242 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh-hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence             679988888642     1             111222 11346889999999999999999999999999988876322


Q ss_pred             EeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccC
Q 001490          991 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1046 (1068)
Q Consensus       991 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 1046 (1068)
                      .......+|         -+++.|-.  ...+++++.|..=.++...+++ .|...
T Consensus       243 ~~~~~~~lP---------~ls~~~is--e~~vv~ag~~c~P~lf~~~~~~-~l~~~  286 (361)
T KOG1523|consen  243 QSVATAQLP---------LLSVSWIS--ENSVVAAGYDCGPVLFVTDEEG-GLSFA  286 (361)
T ss_pred             cchhhccCC---------ceeeEeec--CCceeecCCCCCceEEEecccc-ceeee
Confidence            222111122         23555553  3556666666544555554443 44433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.3e-11  Score=132.48  Aligned_cols=508  Identities=12%  Similarity=0.147  Sum_probs=299.0

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCc------------ccceEEEccccccEEEEEEcCCCCcEEEEEEe
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG  438 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~------------~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~  438 (1068)
                      ......|++|+....|+|+|+.||.++|-.+.+...            +....++.||.+.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            345788999999999999999999999998876432            111235789999999999999888  688999


Q ss_pred             CCCcEEEEECCCCceeeEe--ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC
Q 001490          439 DDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN  516 (1068)
Q Consensus       439 ~d~~i~iwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d  516 (1068)
                      .+|.|.+|-+-.|.-...+  ......|.+++|..  ||..+...-.||.|.+=.++..+ +.--.........+.|++|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence            9999999998777644332  23456678888754  88899999999988765544322 1111112223456889999


Q ss_pred             CCEEEEEeeCCCCceeEEEEeCCCCe-------eeeEEec-cccccCCeEEEEEe--------cCCCEEEEEECCCeEEE
Q 001490          517 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI  580 (1068)
Q Consensus       517 ~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~-~~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i  580 (1068)
                      .+.++.+-.    .+.+.++|....-       +.....+ .......|..+.|.        |+...++.+..+|.+.|
T Consensus       168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence            988877654    4458888865321       1011111 11011235555553        57788999999999888


Q ss_pred             EEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC---------eEEEEECCCCceeeeccccccceeeeEEcCC
Q 001490          581 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI  651 (1068)
Q Consensus       581 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  651 (1068)
                      -.-.+...-..+...   -.+....|+++|..|++++.+.         .|.++. .-+..+.+++.....         
T Consensus       244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~---------  310 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSC---------  310 (1189)
T ss_pred             hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCce---------
Confidence            765443332333222   2367789999999999988753         222221 112233333333333         


Q ss_pred             ccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC
Q 001490          652 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  731 (1068)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  731 (1068)
                                                                                   |+++.|-..|-+++. .-|
T Consensus       311 -------------------------------------------------------------It~lsWEg~gLriA~-Avd  328 (1189)
T KOG2041|consen  311 -------------------------------------------------------------ITGLSWEGTGLRIAI-AVD  328 (1189)
T ss_pred             -------------------------------------------------------------eeeeEEcCCceEEEE-Eec
Confidence                                                                         334444333332221 122


Q ss_pred             ccEEEEeccCCcc----------CCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001490          732 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  800 (1068)
Q Consensus       732 g~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~  800 (1068)
                      +.+.+=++..+-.          ...+.......+..||..+.+....       .-....+++|+.+--.|+.-. ++.
T Consensus       329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence            2222222111100          0001111112355666666553322       223455777777666665554 455


Q ss_pred             EEEEEc-cCceeEEEec-----C--CC---CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee---------------
Q 001490          801 ISLYIV-MTFKTILTIM-----P--PS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---------------  854 (1068)
Q Consensus       801 i~iwd~-~~~~~~~~~~-----~--~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---------------  854 (1068)
                      +.-++. ++...+..+.     +  -.   ..|.-.-..- ++..++.++.+ .+.+|.....+.               
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~  479 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF  479 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence            544421 2211111110     0  01   1122222222 56677777766 478886532111               


Q ss_pred             -----------------eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceE
Q 001490          855 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  917 (1068)
Q Consensus       855 -----------------~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  917 (1068)
                                       ..++.|..++|.+++.|  .++|..+-..|.|.-+.+.+.....     ...-    ...+..
T Consensus       480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~y~~----n~~~y~  548 (1189)
T KOG2041|consen  480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----SYPV----NPSIYS  548 (1189)
T ss_pred             cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----cccc----Cchhee
Confidence                             13445667788888886  5788899999999999998844222     2111    125888


Q ss_pred             EEEeeCCCEEEE-EeCCeEEEEECC---CceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490          918 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       918 ~~~spdg~~la~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd  982 (1068)
                      ++..-+..++|+ ---|.+.+.|+.   +|..+.-+.......|+.+.|..|...|++--....++|++
T Consensus       549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr  617 (1189)
T KOG2041|consen  549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR  617 (1189)
T ss_pred             EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence            999988888887 455667777665   45555544555577889999998887666544444455554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=3.3e-14  Score=145.15  Aligned_cols=272  Identities=18%  Similarity=0.182  Sum_probs=210.7

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      ....+.++.+|++| +.|+.-|.|..+|+.++++..+.++                    ...|..+.|-.+.+++|++ 
T Consensus       131 GPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~v--------------------~Etv~Dv~~LHneq~~AVA-  188 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEINV--------------------METVRDVTFLHNEQFFAVA-  188 (545)
T ss_pred             CCeeeeecCCccEE-EecCCccceeeeecccceeeeeeeh--------------------hhhhhhhhhhcchHHHHhh-
Confidence            66789999999966 5556669999999999998765332                    3579999999999999988 


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeee
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  471 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~  471 (1068)
                      ....++|||-..-+ +.+   +..| ..|..+.|.|---  +|++++..|.++--|+.+|+.+..+..-.+.+..++-+|
T Consensus       189 QK~y~yvYD~~GtE-lHC---lk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  189 QKKYVYVYDNNGTE-LHC---LKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             hhceEEEecCCCcE-Eee---hhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            56679999976532 332   3333 5689999999866  899999999999999999999999988888888888766


Q ss_pred             cCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490          472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  551 (1068)
Q Consensus       472 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  551 (1068)
                      -+  ..+-.|...|+|.+|.....+.+..+..|.++|.++++.++|+|+++.+.    |..+.|||+++-..+.++.. .
T Consensus       262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p  334 (545)
T KOG1272|consen  262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P  334 (545)
T ss_pred             cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence            43  47888999999999999999999999999999999999999999999987    66799999998877666665 2


Q ss_pred             cccCCeEEEEEecCCCEEEEEECCCeEEEEE-cCCCe--EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001490          552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  624 (1068)
Q Consensus       552 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  624 (1068)
                         .....+++|..|  +++.+....+.||. .-.+.  .-...-.|.-...|..+.|.|-...|-+|...|.-.+
T Consensus       335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence               456778888665  55556666799994 33322  1111112222236888999997777777766654444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=7.1e-13  Score=150.40  Aligned_cols=232  Identities=15%  Similarity=0.146  Sum_probs=153.0

Q ss_pred             CCccceeeecccCCCCceEEEEcCCCCeEEEEEcC--cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490          297 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  374 (1068)
Q Consensus       297 ~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  374 (1068)
                      +......+.+..|...+.+.+|||||++++.+...  +..|.+||+.+++...                    +....+.
T Consensus       190 D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~  249 (433)
T PRK04922        190 DSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGI  249 (433)
T ss_pred             CCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCC
Confidence            33445556677777789999999999966544432  2469999998887543                    2223344


Q ss_pred             eEEEEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-CCCc--EEEEEC
Q 001490          375 VNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDA  448 (1068)
Q Consensus       375 V~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~~--i~iwd~  448 (1068)
                      ..+++|||||+.|+.. +.++  .|++||+.+++..    .+..+.......+|+|||++  ++..+ .++.  |+++|+
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl  323 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAA  323 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEEC
Confidence            5678999999988754 4444  6999999987632    34455555678899999994  54444 4444  777787


Q ss_pred             CCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCC---cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEee
Q 001490          449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  525 (1068)
Q Consensus       449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~  525 (1068)
                      .+++.. .+..+.......+|++  ||+.|+..+.++   .|.+||+.++.... +. +........|+|||++++..+.
T Consensus       324 ~~g~~~-~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        324 SGGSAE-RLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CCCCeE-EeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEe
Confidence            777643 3332333344566755  777887765443   58999987766543 22 2223456799999999988775


Q ss_pred             CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       526 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      . .+...|++++... .....+..+.   +.+...+|+|
T Consensus       399 ~-~g~~~L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp  432 (433)
T PRK04922        399 E-GGRGVLAAVSTDG-RVRQRLVSAD---GEVREPAWSP  432 (433)
T ss_pred             c-CCceEEEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence            4 3467799999854 3444454433   4566667765

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=3.6e-14  Score=144.92  Aligned_cols=269  Identities=16%  Similarity=0.214  Sum_probs=199.3

Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490          601 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  680 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  680 (1068)
                      ...+.++.+|++|+.|+..|.+..+|..+++....+..                                          
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------------------------------  169 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------------------------------  169 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------------------------------
Confidence            46789999999999999999999999998876654431                                          


Q ss_pred             cccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccC
Q 001490          681 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  760 (1068)
Q Consensus       681 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  760 (1068)
                                                   ...|.++.|-.+.+ +++.+....++|||-.                    
T Consensus       170 -----------------------------~Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~--------------------  199 (545)
T KOG1272|consen  170 -----------------------------METVRDVTFLHNEQ-FFAVAQKKYVYVYDNN--------------------  199 (545)
T ss_pred             -----------------------------hhhhhhhhhhcchH-HHHhhhhceEEEecCC--------------------
Confidence                                         12334444444444 3344445566666522                    


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEE
Q 001490          761 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  839 (1068)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  839 (1068)
                         |..+....     ....|..+.|-|.--+|+++++ |.++--|+.+|+.+..+....+.+..++-.| -+.++-+|.
T Consensus       200 ---GtElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~Gh  270 (545)
T KOG1272|consen  200 ---GTELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGH  270 (545)
T ss_pred             ---CcEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcC
Confidence               22122211     3567888999999888888884 8999999999999999999999999999999 788999999


Q ss_pred             CCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEE
Q 001490          840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  919 (1068)
Q Consensus       840 ~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  919 (1068)
                      ..|+|.+|...+.+++..+..|.++|.+|++.++|+++||+|.|..++|||+..-....     .....    .....++
T Consensus       271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~-----t~~tp----~~a~~ls  341 (545)
T KOG1272|consen  271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH-----TYRTP----HPASNLS  341 (545)
T ss_pred             CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc-----eeecC----CCccccc
Confidence            99999999999999998899999999999999999999999999999999999844211     11111    2466788


Q ss_pred             EeeCCCEEEEEeCCeEEEEECC-Cce-eeeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490          920 FHKDQTRFLLVHETHLAIYEAE-ELT-CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       920 ~spdg~~la~~~d~~i~vwd~~-~~~-~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~v  980 (1068)
                      ||..|- ||.+....+.||.=. .+. .....+..|  .+.|..+.|.|-...|-.|..-|.-.+
T Consensus       342 ~Sqkgl-LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  342 LSQKGL-LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             cccccc-eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence            887774 666777789999532 222 222223334  569999999997776666655554433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.5e-12  Score=147.76  Aligned_cols=238  Identities=15%  Similarity=0.113  Sum_probs=158.3

Q ss_pred             CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccc
Q 001490          333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ  409 (1068)
Q Consensus       333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~  409 (1068)
                      .+|.+||...+....                    +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++..  
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--  241 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--  241 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence            468899986543321                    44567789999999999999988643   47999999887632  


Q ss_pred             eEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CCc
Q 001490          410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK  486 (1068)
Q Consensus       410 ~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~  486 (1068)
                        .+..+.+...+++|+|||+. ++++.+.++  .|++||+.+++. ..+..+.......+|++  ||+.|+..+. +|.
T Consensus       242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~  315 (433)
T PRK04922        242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR  315 (433)
T ss_pred             --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence              23344455668899999995 334455555  599999988875 44555655556667755  7777777664 455


Q ss_pred             --EEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          487 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       487 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                        |.++++.+++... +..........+|+|||++++..... .+...|.+||+.+++.. .+.. .   .......|+|
T Consensus       316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp  388 (433)
T PRK04922        316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP  388 (433)
T ss_pred             ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence              5566665554332 22233344568999999999887642 23557999999888754 3322 1   2334568999


Q ss_pred             CCCEEEEEECC---CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          565 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       565 ~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      ||++++..+.+   +.|++++... .....+..+.  ..+...+|+|
T Consensus       389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence            99998876643   4688888854 4445454322  2356667776

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.5e-11  Score=129.60  Aligned_cols=286  Identities=12%  Similarity=0.129  Sum_probs=187.9

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE-
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  390 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~-  390 (1068)
                      .....++|++|+ ++|.+.. ..|+|++..++..+...                     ....+.++.|||-|.||.+= 
T Consensus        36 ~~~v~~~S~~G~-lfA~~~~-~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~e   92 (566)
T KOG2315|consen   36 PCNVFAYSNNGR-LFAYSDN-QVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTWE   92 (566)
T ss_pred             cceeEEEcCCCc-EEEEEcC-CeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccccc
Confidence            467889999998 6676654 88999999988644321                     12278899999999999763 


Q ss_pred             ----eCC-----cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC
Q 001490          391 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  461 (1068)
Q Consensus       391 ----~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  461 (1068)
                          ..+     ..+.+|+++++....   .+......-++..|+.|..   ++.--..+.+.+|++..-+.+. -+-|.
T Consensus        93 ~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~  165 (566)
T KOG2315|consen   93 PWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV  165 (566)
T ss_pred             ccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence                122     347899999954322   1222222226899999986   3333345679999987643332 22367


Q ss_pred             CcEEEEeeeecCCccEEEE-----EEcCCcEEEEeCCCCCceEEec---CCCCcEEEEEEccCCCEEEE-Eee--CC---
Q 001490          462 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFS-CGT--SK---  527 (1068)
Q Consensus       462 ~~v~~i~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~-~~~--~~---  527 (1068)
                      ..|..+.++|.+....+++     .+.-+.|++|.+.....-....   .....-..+.|++-|.-|++ .+.  ++   
T Consensus       166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~  245 (566)
T KOG2315|consen  166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA  245 (566)
T ss_pred             cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence            7888888888765556655     3455679999776222211110   01112245778877764432 222  11   


Q ss_pred             --CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE--EECCCeEEEEEcCCCeEEEEEeCCCCCCCCce
Q 001490          528 --EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       528 --~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                        -|+..+++.++......-.+..    .++|.++.|+|+++.+++  |-.-..+.|+|++ +.++..+..    .+-++
T Consensus       246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~  316 (566)
T KOG2315|consen  246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT  316 (566)
T ss_pred             cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence              2466788888874333333322    489999999999987766  5578889999985 566666542    23578


Q ss_pred             EEEecCCCEEEEEECC---CeEEEEECCCCceeeec
Q 001490          604 ICFNKNGTLLAVIANE---NRIKILETPESNSVDAA  636 (1068)
Q Consensus       604 v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~  636 (1068)
                      +-|+|.|++++.++-+   |.|.+||+.+.+.+..+
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            9999999999988764   88999999876655444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=1.1e-12  Score=148.25  Aligned_cols=232  Identities=19%  Similarity=0.186  Sum_probs=149.8

Q ss_pred             ccceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          299 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       299 p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      .....+.+..+.+.+.+.+|||||+.++++...+  ..|.+||+.+|+...                    +....+.+.
T Consensus       184 dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~  243 (427)
T PRK02889        184 DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNS  243 (427)
T ss_pred             CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCcc
Confidence            3445566677778999999999998665544333  359999999887543                    222334566


Q ss_pred             EEEECCCCCEEEE-EeCCcEEEEEE--ccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE--ECCCC
Q 001490          377 RVVWSPDGSLLGV-AYSKHIVQLYA--YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTG  451 (1068)
Q Consensus       377 ~~~~spdg~~las-~~~d~~i~vwd--~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw--d~~~~  451 (1068)
                      +.+|||||+.|+. .+.++...||.  +.++. .+   .+..+...+....|+|||+. ++++...++...||  ++.++
T Consensus       244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g  318 (427)
T PRK02889        244 APAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGG  318 (427)
T ss_pred             ceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCC
Confidence            8999999999875 46677655554  54443 22   34455556677899999995 23333344555666  44455


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCC---cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  528 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~  528 (1068)
                      ... .+..+........|+|  ||++|+..+.++   .|.+||+.++.......  ........|+|||+.|+.....+ 
T Consensus       319 ~~~-~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-  392 (427)
T PRK02889        319 AAQ-RVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-  392 (427)
T ss_pred             ceE-EEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-
Confidence            432 2222222333455654  788888777654   59999998776543322  22346789999999999887643 


Q ss_pred             CceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC
Q 001490          529 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  565 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  565 (1068)
                      +...+++.+. ++.....+..+.   +.+...+|+|-
T Consensus       393 g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~  425 (427)
T PRK02889        393 GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF  425 (427)
T ss_pred             CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence            4566888787 455555555444   56677777763

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.6e-12  Score=145.15  Aligned_cols=223  Identities=14%  Similarity=0.106  Sum_probs=146.5

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  444 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~  444 (1068)
                      +..+...+.+.+|||||+.||..+.+   ..|.+||+.+++..    .+....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~----~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR----VVANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            34567789999999999999987643   46999999988643    23334455678999999995 344567777766


Q ss_pred             EE--ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CCcEEEEeCC--CCCceEEecCCCCcEEEEEEccCCCE
Q 001490          445 VW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR  519 (1068)
Q Consensus       445 iw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~d~~~  519 (1068)
                      ||  |+.++. ...+..+.+......|++  ||+.|+..+. +|...+|.++  .+.... +..........+|+|||++
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKL  341 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCE
Confidence            65  554444 556665665566667755  7777776654 5666777654  333222 2222333446789999999


Q ss_pred             EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCC---eEEEEEcCCCeEEEEEeCCC
Q 001490          520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG  596 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~  596 (1068)
                      ++..+..+ +...|++||+.+++......+     .......|+||++.|+.++.++   .+++.+. ++.....+..+.
T Consensus       342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            99776432 345799999988875433222     2235678999999998877544   3555566 455555554332


Q ss_pred             CCCCCceEEEec
Q 001490          597 GLPENPRICFNK  608 (1068)
Q Consensus       597 ~~~~v~~v~~s~  608 (1068)
                        ..+...+|+|
T Consensus       415 --g~~~~p~wsp  424 (427)
T PRK02889        415 --GDVREPSWGP  424 (427)
T ss_pred             --CCCCCCccCC
Confidence              2356677776

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=1e-11  Score=129.00  Aligned_cols=279  Identities=14%  Similarity=0.108  Sum_probs=186.0

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      .-++..++|||.|+ +|++... ..|.+|+-..+..+...                     -...|..+.|||.++||.+
T Consensus        32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence            34789999999998 5565544 67999998876655331                     1247999999999999998


Q ss_pred             EeCCc---------------EEEEEEccCCCcccceEEEcccccc--EE-EEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          390 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       390 ~~~d~---------------~i~vwd~~~~~~~~~~~~~~~h~~~--v~-~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      =+..+               .+.+||+.+|..+.   .+.+-..+  .+ -+.|+-+.+  +++-- ....++|+++ ++
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~  161 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD  161 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence            65433               48999999987655   34444333  44 678998888  44433 2446999997 44


Q ss_pred             cee-eEeccC-CCcEEEEeeeecCCccEEEE-----EEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          452 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       452 ~~~-~~~~~h-~~~v~~i~~~~~~~~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      ... ..+..- ...|....++|..++..|+.     ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus       162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~  241 (561)
T COG5354         162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV  241 (561)
T ss_pred             ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence            322 112111 24577777888766666655     35678899999886655554433333345678888998876432


Q ss_pred             e-------CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE--EECCCeEEEEEcCCCeEEEEEeCC
Q 001490          525 T-------SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       525 ~-------~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                      .       +--|+..++++++....+ ....+..   ++|...+|.|.++.+++  |..+-.+.++|++.. ....+...
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~  316 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ  316 (561)
T ss_pred             EEeeecccceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence            1       112456788988874433 2222334   89999999999888766  457888999999765 44444322


Q ss_pred             CCCCCCceEEEecCCCEEEEEECC---CeEEEEEC
Q 001490          596 GGLPENPRICFNKNGTLLAVIANE---NRIKILET  627 (1068)
Q Consensus       596 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iwd~  627 (1068)
                      .    -+.+.|+|.+++++.++-|   |.+.+|+.
T Consensus       317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~  347 (561)
T COG5354         317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDP  347 (561)
T ss_pred             c----cccccccCcccEEEEecCCccccceEEecc
Confidence            1    3678899999999987765   34444443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.51  E-value=2.6e-10  Score=125.03  Aligned_cols=211  Identities=13%  Similarity=0.174  Sum_probs=137.3

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEccC-ceeEEE---e----------cCCCCCeEEEEEeCCCCCEEEEEEC-CC
Q 001490          780 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS  842 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg  842 (1068)
                      ....++++|++++|+++.  +|.|.++++.. +.....   +          +.......++.|+| +++++++... ..
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D  166 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD  166 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence            345678888888888886  68888888875 333222   1          11235678999999 8887777653 35


Q ss_pred             eEEEEEcCCce--ee--eeec-ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEECC--CCceeeeeeeecCCCcccCCCC
Q 001490          843 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS  914 (1068)
Q Consensus       843 ~v~iwd~~~~~--~~--~~~~-~h~~~V~~l~~spdg~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  914 (1068)
                      .|++|++....  ..  ..+. ........++|+|||+++.... .+++|.++++.  .+.......+............
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            89999997654  21  2222 2334578899999999886654 57789999998  5544443344433221111125


Q ss_pred             ceEEEEeeCCCEEEEE--eCCeEEEEECC--Ccee--eeeeccCCCcCEEEEEEecCCCEEEEEEC-CCcEEEEEc--CC
Q 001490          915 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEA--SN  985 (1068)
Q Consensus       915 v~~~~~spdg~~la~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-dg~v~vwd~--~~  985 (1068)
                      ...+++||||++|.++  ..+.|.+|+++  +|..  +..+. ........++++|||++|+++.. ++.|.+|++  .+
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            7889999999999985  45689999983  3433  22222 12445889999999999998874 568999876  57


Q ss_pred             CcEEEEe
Q 001490          986 LEVQCRI  992 (1068)
Q Consensus       986 ~~~~~~~  992 (1068)
                      |.+...-
T Consensus       326 G~l~~~~  332 (345)
T PF10282_consen  326 GKLTPVG  332 (345)
T ss_dssp             TEEEEEE
T ss_pred             CcEEEec
Confidence            7665443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=1.2e-12  Score=136.37  Aligned_cols=252  Identities=10%  Similarity=0.125  Sum_probs=165.1

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE-----CCCCCE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL  386 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~-----spdg~~  386 (1068)
                      .+....++-.|++|+.--+  ..+.+|+...+..+..             ++.+..+.+  ....|-+|     .|+|--
T Consensus       125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d  187 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD  187 (636)
T ss_pred             ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence            3455566667776654333  6789999886544331             122222332  22334444     456777


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEcc--ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  464 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v  464 (1068)
                      |..|-.-|.|.+.|....+ +..+.....  ....|+|+.|-|.++. .++.+-.+|.+++||..          +....
T Consensus       188 llIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~  255 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA  255 (636)
T ss_pred             eEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence            8889888999999876632 221111111  2368999999998877 55566779999999862          11111


Q ss_pred             EEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeee
Q 001490          465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  544 (1068)
Q Consensus       465 ~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~  544 (1068)
                      +.-++..-+++..+.....-+.      .+...+..+......|..++|+|||++||+.+.    |++++|+|..+.+++
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL  325 (636)
T ss_pred             CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence            1111211223323322211100      111333334444558899999999999999986    788999999999888


Q ss_pred             eEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEe
Q 001490          545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  607 (1068)
Q Consensus       545 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  607 (1068)
                      ..++..-   +...|++|+|||++|++|++|.-|.||.+...+.+..-.+  |...|..|+|.
T Consensus       326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG--HkSWVs~VaFD  383 (636)
T KOG2394|consen  326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG--HKSWVSVVAFD  383 (636)
T ss_pred             HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc--cccceeeEeec
Confidence            7777766   7899999999999999999999999999999988877554  45678888887

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=3.4e-12  Score=128.32  Aligned_cols=273  Identities=14%  Similarity=0.126  Sum_probs=196.0

Q ss_pred             CCCCceEEEEcCCCCeEEEEEc-CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGT-NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      ..+.|..++|--|++.=+..+. .|..+.............    .||+..         ......+|..++.. | ..|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~-d-g~L  118 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA-D-GTL  118 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc-C-CEE
Confidence            3457888888877765444444 556677777766655543    233322         22345566666654 3 367


Q ss_pred             EEEeCCcEEEEEEccCCCcc-cceEEEccccccEEEEEEcCCCCcEEEEEEeCC--CcEEEEECCCCceeeEeccCC---
Q 001490          388 GVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGHG---  461 (1068)
Q Consensus       388 as~~~d~~i~vwd~~~~~~~-~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~h~---  461 (1068)
                      ++|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++..++ ++++||..  ..+.|||++..+.+.+-+.-.   
T Consensus       119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~  196 (412)
T KOG3881|consen  119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR  196 (412)
T ss_pred             EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence            77888999999999855421 111123223 45677777777775 67779988  889999999886665433211   


Q ss_pred             ------CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          462 ------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       462 ------~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                            -.++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|++++++++..    .+.+.
T Consensus       197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~  272 (412)
T KOG3881|consen  197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLA  272 (412)
T ss_pred             ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhh
Confidence                  234566676654478999999999999999987654 5577778889999999999999999876    55699


Q ss_pred             EEeCCCCeeeeE-EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec
Q 001490          535 EWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       535 ~wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                      .+|.++++.... +.+..   +.|+++..+|..+++++++-|+.+||+|+.+.+++...-....   .+++.+.+
T Consensus       273 ~FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~  341 (412)
T KOG3881|consen  273 KFDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD  341 (412)
T ss_pred             eecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence            999999998877 77777   9999999999999999999999999999999777766554433   45555544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.6e-10  Score=122.75  Aligned_cols=543  Identities=9%  Similarity=0.094  Sum_probs=320.1

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      ...|++|..... ++|+|+.||.+++-.+.+...-....    -+.+.+...-...+.||.+.|.-+.|+.+.+.|-+..
T Consensus        16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            678999999887 67999999999999886643221100    0011111112234889999999999999999999999


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcEEEEeee
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH  470 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~i~~~  470 (1068)
                      .+|.|.||-+-.|.-.... .-.....-|.+++|..||.  .++....||.|.+=.++..+.- +.+++.  ....+.|+
T Consensus        91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws  165 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWS  165 (1189)
T ss_pred             CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceeec
Confidence            9999999999887654432 2233556799999999999  6777778888877654432211 122221  12234554


Q ss_pred             ecCCccEEEEEEcCCcEEEEeCCCCC-------ceE----EecCCCCcEEEEEE--------ccCCCEEEEEeeCCCCce
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAY--------SANGRRLFSCGTSKEGES  531 (1068)
Q Consensus       471 ~~~~~~~l~s~s~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~--------s~d~~~l~~~~~~~~~~~  531 (1068)
                      +  |.+.++.+-..|.++++|.+..-       +..    .+...+..+..+.|        -||...++++..    +|
T Consensus       166 ~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG  239 (1189)
T KOG2041|consen  166 E--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG  239 (1189)
T ss_pred             c--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence            4  66677778888999999865321       111    11122223445554        257788888876    33


Q ss_pred             eEEEEeCC-CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC---------CeEEEEEcCCCeEEEEEeCCCCCCCC
Q 001490          532 FLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN  601 (1068)
Q Consensus       532 ~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v  601 (1068)
                      .+.+..-. ..+++..-.+     -.+....|+++|..++.++.+         +.|.++.. -|+.+.+++.++.  .|
T Consensus       240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I  311 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI  311 (1189)
T ss_pred             eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence            45554322 2233222222     357888999999999987743         34555553 5777778876654  48


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeec
Q 001490          602 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  681 (1068)
Q Consensus       602 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  681 (1068)
                      +.++|-..|-.++.+- |+.|.+=+++..-....+.   ..|   .+                .+..   ++       .
T Consensus       312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~Tv---Vy----------------~y~~---~e-------~  358 (1189)
T KOG2041|consen  312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---ETV---VY----------------VYQK---EE-------L  358 (1189)
T ss_pred             eeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---eEE---EE----------------EEcc---CC-------C
Confidence            8999988887777654 5777776665432111111   000   00                0000   00       0


Q ss_pred             ccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCC
Q 001490          682 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  761 (1068)
Q Consensus       682 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  761 (1068)
                      ....|.+||..+.+....         .-....+++++.+--.++.-..+|.+.-++.-.+.    +   ....+.+-+.
T Consensus       359 p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~----~---~~~~l~LCNS  422 (1189)
T KOG2041|consen  359 PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR----S---RVYFLQLCNS  422 (1189)
T ss_pred             cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc----c---ceEEEeeecc
Confidence            012456777654332211         11233455666555545555555554432110000    0   0000000000


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCcee------------------------------
Q 001490          762 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT------------------------------  811 (1068)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~------------------------------  811 (1068)
                      - |.   .  +.  ..-..|.-.-..-++.+++.++...+.+|.....+.                              
T Consensus       423 I-GT---~--lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~  494 (1189)
T KOG2041|consen  423 I-GT---S--LD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLE  494 (1189)
T ss_pred             c-CC---c--CC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceee
Confidence            0 00   0  00  011123333333467788888877788887532110                              


Q ss_pred             --EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001490          812 --ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  889 (1068)
Q Consensus       812 --~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iw  889 (1068)
                        ..++.+..++|.+++.+   .++|+++-..|.|+-|.+.+........ -+..|+++++.-+...+|...--|.+.+.
T Consensus       495 ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~  570 (1189)
T KOG2041|consen  495 YSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQ  570 (1189)
T ss_pred             ccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeee
Confidence              12344556788888886   3799999999999999999887766655 45668999999888999998888999998


Q ss_pred             ECCC-CceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce
Q 001490          890 DVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT  944 (1068)
Q Consensus       890 d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~  944 (1068)
                      |+.- ........+-....     ..|..+.|..|+..+++ -....++|++-.+.+
T Consensus       571 dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe  622 (1189)
T KOG2041|consen  571 DLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE  622 (1189)
T ss_pred             ecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence            8872 11111111211111     24888999998877766 455668888765544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=5.2e-11  Score=125.64  Aligned_cols=336  Identities=14%  Similarity=0.134  Sum_probs=211.2

Q ss_pred             CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEE-----ECC----
Q 001490          505 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GDD----  575 (1068)
Q Consensus       505 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~d----  575 (1068)
                      ..++...+++++|++++.+.     +..+.|++..++..+.+...     ..+..+.|+|.++++.+-     ..+    
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~  103 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS  103 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence            34567889999999999886     44589999888864433332     368899999999988762     122    


Q ss_pred             -CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490          576 -HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  654 (1068)
Q Consensus       576 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  654 (1068)
                       -.+.+|+++++.....+......  -++..|+.|..+.+- -..+.+.+|+..+-+. ...+-|...+..+.++|....
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~-~~~kl~~~~i~~f~lSpgp~~  179 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKT-IQHKLSVSGITMLSLSPGPEP  179 (566)
T ss_pred             CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccc-eeeeeeccceeeEEecCCCCC
Confidence             34779999996666555543322  257888888754433 3347899999887322 223345667777777764222


Q ss_pred             cccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccE
Q 001490          655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  734 (1068)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  734 (1068)
                      .       .+++.        ..-..+.-..+++|..............   .--...-..+.|.+-|.-|+.....   
T Consensus       180 ~-------~vAvy--------vPe~kGaPa~vri~~~~~~~~~~~~a~k---sFFkadkvqm~WN~~gt~LLvLast---  238 (566)
T KOG2315|consen  180 P-------FVAVY--------VPEKKGAPASVRIYKYPEEGQHQPVANK---SFFKADKVQMKWNKLGTALLVLAST---  238 (566)
T ss_pred             c-------eEEEE--------ccCCCCCCcEEEEeccccccccchhhhc---cccccceeEEEeccCCceEEEEEEE---
Confidence            1       11110        0112344467888886632222111110   0011223356677766655443321   


Q ss_pred             EEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEccCcee
Q 001490          735 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKT  811 (1068)
Q Consensus       735 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~  811 (1068)
                         +++....+    .-...++.+.+.. |. -...++.   ..++|.++.|+|+|+-+++..   -.++.|||+. +..
T Consensus       239 ---dVDktn~S----YYGEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~  305 (566)
T KOG2315|consen  239 ---DVDKTNAS----YYGEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP  305 (566)
T ss_pred             ---eecCCCcc----ccccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence               01110000    0111123333333 22 1222232   478999999999998888776   3789999986 555


Q ss_pred             EEEecCCCCCeEEEEEeCCCCCEEEEEECC---CeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeC------
Q 001490          812 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------  882 (1068)
Q Consensus       812 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------  882 (1068)
                      +..+  ..++=+++-|+| .|++|+.++-+   |.+.|||+.+.+++..+..-..  +-+.|+|||.+++|+..      
T Consensus       306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence            5444  456678999999 89998887755   7999999999999888875443  45899999999999875      


Q ss_pred             CCcEEEEECCC
Q 001490          883 DAQIFVWDVDG  893 (1068)
Q Consensus       883 dg~i~iwd~~~  893 (1068)
                      |+.++||++.+
T Consensus       381 dNg~KiwhytG  391 (566)
T KOG2315|consen  381 DNGIKIWHYTG  391 (566)
T ss_pred             cCCeEEEEecC
Confidence            67799999986

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.49  E-value=3.8e-08  Score=119.37  Aligned_cols=519  Identities=12%  Similarity=0.158  Sum_probs=290.8

Q ss_pred             cceEEEEECCCCCEEEEEeCC--c--EEEEEEccCCCcccceEEEc-----cccccEEEEEEcCCCCcEEEEEEeCCCcE
Q 001490          373 VSVNRVVWSPDGSLLGVAYSK--H--IVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTI  443 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~d--~--~i~vwd~~~~~~~~~~~~~~-----~h~~~v~~l~~s~d~~~~~l~s~~~d~~i  443 (1068)
                      ..+...+|.+....+.++...  .  .|.+-....+........+.     ...+.|.++.|.++..  .++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence            456777777765554433322  2  23343333222122222222     2346899999999998  57777778889


Q ss_pred             EEE----ECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC---------------C--------CC
Q 001490          444 KVW----DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---------------S--------LG  496 (1068)
Q Consensus       444 ~iw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~---------------~--------~~  496 (1068)
                      .+.    |..+... .....-...|.+++|+|  |+.+|+.++.++++.+-.-+               .        ++
T Consensus       100 ~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk  176 (928)
T PF04762_consen  100 ILVREDPDPDEDEI-EIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK  176 (928)
T ss_pred             EEEEccCCCCCcee-EEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence            988    5443332 22233567899999977  66799999999888765321               0        00


Q ss_pred             ceEEecC------------------------CCCcEEEEEEccCCCEEEEEeeCCC-C-ceeEEEEeCCCCeeeeEEecc
Q 001490          497 ARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGL  550 (1068)
Q Consensus       497 ~~~~~~~------------------------~~~~i~~~~~s~d~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~  550 (1068)
                      ....+.+                        ....-..++|-.||.++|+.+.+.. + ...+++|+-+ |....+-...
T Consensus       177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v  255 (928)
T PF04762_consen  177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV  255 (928)
T ss_pred             ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence            0000000                        1224467899999999998876332 2 5889999965 7655554433


Q ss_pred             ccccCCeEEEEEecCCCEEEEEEC---CCeEEEEEcCCCeEEEEEeCC--CCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001490          551 QLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKIL  625 (1068)
Q Consensus       551 ~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  625 (1068)
                      .   +--.+++|.|.|+.|++...   ...|.+|..+ |-.-..+...  .....|..+.|++|+..||+...|. |.+|
T Consensus       256 ~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLW  330 (928)
T PF04762_consen  256 D---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLW  330 (928)
T ss_pred             C---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEE
Confidence            3   44567899999999888653   4567777754 4333334332  2334689999999999999988765 9999


Q ss_pred             ECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecC
Q 001490          626 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  705 (1068)
Q Consensus       626 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  705 (1068)
                      -..+....-...-        .+.                                                        
T Consensus       331 t~~NYHWYLKqei--------~~~--------------------------------------------------------  346 (928)
T PF04762_consen  331 TRSNYHWYLKQEI--------RFS--------------------------------------------------------  346 (928)
T ss_pred             EeeCCEEEEEEEE--------Ecc--------------------------------------------------------
Confidence            8876543221110        000                                                        


Q ss_pred             CccccccEEEEEEecCC-ceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEE
Q 001490          706 SKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  784 (1068)
Q Consensus       706 ~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  784 (1068)
                         ....+..+.|+|.. ..|...+.+|.+..+++.-                  +...+.                   
T Consensus       347 ---~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~------------------~v~~s~-------------------  386 (928)
T PF04762_consen  347 ---SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW------------------DVSRSP-------------------  386 (928)
T ss_pred             ---CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE------------------EEEecC-------------------
Confidence               01112225555543 3355555556666655421                  111110                   


Q ss_pred             EEec-CCCEEEEEeCCeEEEEEccCceeE-----EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee----
Q 001490          785 ALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----  854 (1068)
Q Consensus       785 ~~s~-dg~~l~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----  854 (1068)
                      ..+| |...+++-++.++.+-.+...-..     ..+. ....|.+++|++ ++..+|+-..||.|.+|.......    
T Consensus       387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~  464 (928)
T PF04762_consen  387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVK  464 (928)
T ss_pred             CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCccccc
Confidence            0011 222344444455666665543211     2222 346899999999 777799999999999998544221    


Q ss_pred             ----eeeec----------ccccCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeecCCCcccCCCCceE
Q 001490          855 ----ISKLE----------GHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  917 (1068)
Q Consensus       855 ----~~~~~----------~h~~~V~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  917 (1068)
                          ...+.          .-...+..++|..+...++....+   ..+.++++...+...  .........   ..+..
T Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~  539 (928)
T PF04762_consen  465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLI  539 (928)
T ss_pred             CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEE
Confidence                11111          123457888998888777766654   568888885432111  111111111   13445


Q ss_pred             EEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC---EEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          918 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       918 ~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~---~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      +...++...++. ..+|.+..++..........++. .-....++...+..   .++.-+..|.+++    ++..++.  
T Consensus       540 ~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~--  612 (928)
T PF04762_consen  540 ISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS--  612 (928)
T ss_pred             EeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEec--
Confidence            555555553443 77888887766544322211211 22223333333333   3443333444443    3333321  


Q ss_pred             cccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490          994 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus       994 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                                    .+.+++.+   +.+|+.......+++.++.
T Consensus       613 --------------~~tSF~v~---~~~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  613 --------------NCTSFAVT---DSFLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             --------------CCceEEEE---cCEEEEEecCceEEEEECc
Confidence                          12334444   3677777778889999998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=4e-12  Score=144.55  Aligned_cols=233  Identities=15%  Similarity=0.100  Sum_probs=154.8

Q ss_pred             CCCccceeeecccCCCCceEEEEcCCCCeEEEEEcC--cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCc
Q 001490          296 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  373 (1068)
Q Consensus       296 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~  373 (1068)
                      .+......+.+..|...+.+.+|||||++|+.+...  +..|.+||+.+|+...                    +..+.+
T Consensus       187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g  246 (435)
T PRK05137        187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG  246 (435)
T ss_pred             ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence            334455567778888899999999999966554432  4679999999886542                    334556


Q ss_pred             ceEEEEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-CC--CcEEEEE
Q 001490          374 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD  447 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d--~~i~iwd  447 (1068)
                      .+.+.+|||||+.|+.. +.++  .|.+||+.+++..    .+..+........|+|||++  ++..+ .+  ..|++||
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN  320 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence            77889999999988754 4444  4888899887532    35566666778999999995  44443 33  3688889


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      +.++.. ..+..+...+....|+|  ||+.|+..+.+   ..|.+||+...... .+. ....+..+.|+|||+.|+..+
T Consensus       321 ~~g~~~-~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        321 ADGSNP-RRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             CCCCCe-EEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEE
Confidence            776654 34443445555666755  77788776643   35778887554432 222 223467789999999998766


Q ss_pred             eCCCCc--eeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          525 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       525 ~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      ......  ..++++|+..+.. ..+.. .   +.+...+|+|
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp  432 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP  432 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence            533221  4688889876654 33332 2   3455666665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.46  E-value=7.8e-10  Score=117.06  Aligned_cols=205  Identities=11%  Similarity=0.082  Sum_probs=131.4

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-ceee-e
Q 001490          782 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S  856 (1068)
Q Consensus       782 ~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~  856 (1068)
                      ..+++||||+++.+..   +..|.+.|+.+++.+.++.... ...-...+. +..+  +.+.||......+.+ |+.. .
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEe
Confidence            3578889999888775   5789999999999998887533 222222222 2222  223344444433322 2211 1


Q ss_pred             ---eecccccCeE-EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcc----cCCCCceEEEEeeCCCEE
Q 001490          857 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRF  927 (1068)
Q Consensus       857 ---~~~~h~~~V~-~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l  927 (1068)
                         .+.+-..++. .-.|++ ||+++..... |+|.+-|+...+..............    -..+...-++++|||+++
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence               1111001110 014566 8888877666 99999998765544333333221110    011345569999999998


Q ss_pred             EEEe---C--------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCcEEEEec
Q 001490          928 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       928 a~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      .+..   .        +.|.++|+.+++.+..+..+  ..+..++|||||+ +|++.. .++.|.+.|+.+++.++.+.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8732   1        57999999999999987665  4889999999999 777666 57889999999999998884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.45  E-value=2.8e-10  Score=118.61  Aligned_cols=365  Identities=12%  Similarity=0.163  Sum_probs=224.7

Q ss_pred             EEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCE
Q 001490          489 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  568 (1068)
Q Consensus       489 vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  568 (1068)
                      +|+..+......+....-++..+++||.|.+|++....     .|.+|+-..+..+..+..     ..|..+.|+|.+++
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY   85 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY   85 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccce
Confidence            45444444444444455678899999999999987642     399999888776666554     46999999999999


Q ss_pred             EEEEECC---------------CeEEEEEcCCCeEEEEEeCCCCCCCCc-eEEEecCCCEEEEEECCCeEEEEECCCCce
Q 001490          569 ILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESNS  632 (1068)
Q Consensus       569 l~~~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1068)
                      |.+-+..               +.+.+||..+|..+..+.........+ -+.|+-+.+++|-.. ...+.|+++...-.
T Consensus        86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~  164 (561)
T COG5354          86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIE  164 (561)
T ss_pred             eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccc
Confidence            9986533               359999999999999887654432233 678888887776553 35788888632211


Q ss_pred             eeeccc-cccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccc
Q 001490          633 VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  711 (1068)
Q Consensus       633 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  711 (1068)
                      ...... ....+....++|.+..                             ..+..                       
T Consensus       165 ~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~-----------------------  192 (561)
T COG5354         165 EHPFKNLRPVGILDFSISPEGNH-----------------------------DELAY-----------------------  192 (561)
T ss_pred             cCchhhccccceeeEEecCCCCC-----------------------------ceEEE-----------------------
Confidence            100000 0122333333321100                             00011                       


Q ss_pred             cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490          712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  791 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  791 (1068)
                            |.|.     .....+.+++|.++.++.                      +.+..+    -...-..+.+.+.|+
T Consensus       193 ------~tPE-----k~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~  235 (561)
T COG5354         193 ------WTPE-----KLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK  235 (561)
T ss_pred             ------Eccc-----cCCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence                  1111     012345666666553321                      111101    001112345556666


Q ss_pred             EEEEEe------------CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEE--EECCCeEEEEEcCCceeeee
Q 001490          792 YLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISK  857 (1068)
Q Consensus       792 ~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd~~~~~~~~~  857 (1068)
                      ++++--            +..+.|+++... .+.......++|...+|.| .++.+++  |-.+-.+.++|+... ....
T Consensus       236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~  312 (561)
T COG5354         236 YLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY  312 (561)
T ss_pred             eEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence            655321            345888888733 3333335678999999999 5554443  357789999999864 4333


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE----
Q 001490          858 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----  930 (1068)
Q Consensus       858 ~~~h~~~V~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~----  930 (1068)
                      +  ...+=..+.|||.+++++.++-|   |.+.+||..+.-    .+.....+.     ..+-+.|||||+++.+.    
T Consensus       313 ~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~  381 (561)
T COG5354         313 F--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE  381 (561)
T ss_pred             c--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence            3  33444568999999999998876   569999988732    223223322     34667899999999873    


Q ss_pred             ---eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCC
Q 001490          931 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG  976 (1068)
Q Consensus       931 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg  976 (1068)
                         .|+.+.|||+......         ..+.+.|.|.|++..+.+.+.
T Consensus       382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence               3678999998643322         456778999999888877665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=6.9e-10  Score=111.85  Aligned_cols=281  Identities=11%  Similarity=0.096  Sum_probs=184.8

Q ss_pred             cccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecC---ccEEEEeccCCccCCCccceeccCCccc
Q 001490          683 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY  759 (1068)
Q Consensus       683 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~  759 (1068)
                      +..|.+|++++.........   .......++-++++|+++.|.++..+   |.+.-|.++.                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------   73 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------   73 (346)
T ss_pred             CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence            46788998874332221111   12245667889999999999888665   6666666543                  


Q ss_pred             CCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEccC-ceeEEE--ecCCCCC----------eEE
Q 001490          760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS  824 (1068)
Q Consensus       760 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~  824 (1068)
                        .+|..........  ...+...++++++|++|+++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence              3333222222221  233447899999999999998  58999999965 433221  1123333          788


Q ss_pred             EEEeCCCCCEEEEEECC-CeEEEEEcCCceeeeeec---ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--Ccee
Q 001490          825 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ  897 (1068)
Q Consensus       825 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~-dg~i~iwd~~~--~~~~  897 (1068)
                      ..|.| ++++|++.+-. -+|.+|++..|++...-.   .-...-+.|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            89999 89888877532 379999999876532211   23345678999999999876665 89999999987  4444


Q ss_pred             eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeC--CeEEEEECC--Cceeee-eeccCCCcCEEEEEEecCCCEEEEE
Q 001490          898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAE--ELTCLK-QWFPISSVPISQATFSCDCRMVFTS  972 (1068)
Q Consensus       898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d--~~i~vwd~~--~~~~~~-~~~~~h~~~v~~l~fs~dg~~l~t~  972 (1068)
                      ..+.+..+.....-..+...+..++||++|.++..  +.|.+|.+.  +++... .....+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            44444444333333356788999999999999754  367777765  343221 1222334456788999999999999


Q ss_pred             ECCC-cEEEEEcC--CCcEE
Q 001490          973 FVDG-TLSIHEAS--NLEVQ  989 (1068)
Q Consensus       973 ~~dg-~v~vwd~~--~~~~~  989 (1068)
                      ..++ .|.+|..+  +|++.
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            8764 57777655  55554

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=9.9e-11  Score=122.74  Aligned_cols=317  Identities=14%  Similarity=0.187  Sum_probs=197.1

Q ss_pred             cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE-----------CC
Q 001490          507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD  575 (1068)
Q Consensus       507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d  575 (1068)
                      .-+-+.|||.|.||++-...|     |.+|--.+-..++.|..     ..|.-+.|||+.+||++-+           +.
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence            346789999999999987533     89998777666666654     3588999999999999854           22


Q ss_pred             CeEEEEEcCCCeEEEEEeCCCCC-CCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccc
Q 001490          576 HVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  654 (1068)
Q Consensus       576 g~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~  654 (1068)
                      ..++|||+.+|.....+...... ..-.-+.||.|++++|.-.. ..|.||+...-.++..-                  
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~K------------------  342 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKK------------------  342 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccc------------------
Confidence            57999999999999888763222 22345789999999998776 46888876642211100                  


Q ss_pred             cccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccE
Q 001490          655 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  734 (1068)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  734 (1068)
                                           .+                               ....|..+.|+|.+..|+--...   
T Consensus       343 ---------------------sl-------------------------------ki~gIr~FswsP~~~llAYwtpe---  367 (698)
T KOG2314|consen  343 ---------------------SL-------------------------------KISGIRDFSWSPTSNLLAYWTPE---  367 (698)
T ss_pred             ---------------------cc-------------------------------CCccccCcccCCCcceEEEEccc---
Confidence                                 00                               12235555566655433322111   


Q ss_pred             EEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEE
Q 001490          735 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT  814 (1068)
Q Consensus       735 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~  814 (1068)
                                                  +..           ..                    ..+.+..+.+++.+++
T Consensus       368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT  388 (698)
T ss_pred             ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence                                        000           00                    1233444444444444


Q ss_pred             ecCCCCCeEEEEEeCCCCCEEEEE----------ECCCeEEEEEcCCcee-eeeecccccCeEEEEEcCCCCEEEEEeC-
Q 001490          815 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG-  882 (1068)
Q Consensus       815 ~~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~spdg~~l~s~s~-  882 (1068)
                      -.-+.-.-..+-|-. +|.+|+.-          +.-..+.|+.+..... +..+. -...|...+|-|.|..+++.+. 
T Consensus       389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence            333322223344544 55565542          1112456666654432 22222 4567889999999998887654 


Q ss_pred             --CCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE----eCCeEEEEECCCceeeeeeccCCCcC
Q 001490          883 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVP  956 (1068)
Q Consensus       883 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~----~d~~i~vwd~~~~~~~~~~~~~h~~~  956 (1068)
                        ..++.+|.+++. ......+..+...     ....+.|||.|++++++    ..|.+..+|+.-..+...-...| ..
T Consensus       467 ~~k~tvsfY~~e~~-~~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~  539 (698)
T KOG2314|consen  467 TVKNTVSFYAVETN-IKKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA  539 (698)
T ss_pred             ccccceeEEEeecC-CCchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence              357889988852 1223344444332     36789999999999873    46789999988533333212223 35


Q ss_pred             EEEEEEecCCCEEEEEECC
Q 001490          957 ISQATFSCDCRMVFTSFVD  975 (1068)
Q Consensus       957 v~~l~fs~dg~~l~t~~~d  975 (1068)
                      .+.+.|.|.|+|++|+++-
T Consensus       540 at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             cccceECCCCCEEEEeeeh
Confidence            6788999999999999864

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=2.7e-11  Score=127.41  Aligned_cols=203  Identities=17%  Similarity=0.160  Sum_probs=136.3

Q ss_pred             cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC--CcEEEEeeeecCCccEEEEEEcCCcEEEEeC
Q 001490          415 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLY  492 (1068)
Q Consensus       415 ~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~  492 (1068)
                      +|...-+.|..+|||++ ++++|...-.|++||+..-...  |..|.  ..|.-.-++  .|-..++.-..|.+|.+-..
T Consensus        49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLs--DD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILS--DDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEec--cchhhheEeecCceeeehhh
Confidence            46677789999999997 7888988999999998765433  33332  223222221  12223444445555544311


Q ss_pred             CCCCceEEecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE
Q 001490          493 DSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  571 (1068)
Q Consensus       493 ~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  571 (1068)
                      -  +...... .+..-..++++. ...+++.++ +.    .|+-+++..|..+..|....   +.++++..++....|++
T Consensus       124 ~--G~hy~~R-IP~~GRDm~y~~~scDly~~gs-g~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~  192 (703)
T KOG2321|consen  124 Y--GRHYRTR-IPKFGRDMKYHKPSCDLYLVGS-GS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLAC  192 (703)
T ss_pred             c--Ceeeeee-cCcCCccccccCCCccEEEeec-Cc----ceEEEEcccccccccccccc---ccceeeeecCccceEEe
Confidence            1  1111111 111223455544 333444433 22    39999999999998888776   88999999999999999


Q ss_pred             EECCCeEEEEEcCCCeEEEEEeCCCC---------CCCCceEEEecCCCEEEEEECCCeEEEEECCCCcee
Q 001490          572 AGDDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSV  633 (1068)
Q Consensus       572 ~s~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  633 (1068)
                      |+.+|.|..||.++...+..+....+         ...|+++.|+.+|-.+++|+.+|.+.|||+.+.+++
T Consensus       193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence            99999999999998877776654322         234788889988989999999999999998865443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=6.3e-10  Score=117.74  Aligned_cols=269  Identities=14%  Similarity=0.140  Sum_probs=169.7

Q ss_pred             CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC----------CcEEEEEEcc
Q 001490          333 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH  402 (1068)
Q Consensus       333 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~----------d~~i~vwd~~  402 (1068)
                      ++|.+.|..+++.+.....                  |.  .-..+ +||||+.|+++..          +..|.+||+.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            8899999999888765221                  11  22224 9999999988865          6789999999


Q ss_pred             CCCcccceEEEcc--c---cccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccE
Q 001490          403 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF  477 (1068)
Q Consensus       403 ~~~~~~~~~~~~~--h---~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~  477 (1068)
                      +.+.+.... +..  +   ......++++|||+.++++--+.+..|.+.|+.+++.+..+...... .-.   +..+...
T Consensus        86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~vy---~t~e~~~  160 (352)
T TIGR02658        86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-HIF---PTANDTF  160 (352)
T ss_pred             cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-EEE---EecCCcc
Confidence            988765332 111  1   12334789999999533333345889999999999999887642211 111   1111111


Q ss_pred             EEEEEcCCcEEEEeCCCCCceE-----EecCCCCcE-EEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCCC-----eeee
Q 001490          478 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR  545 (1068)
Q Consensus       478 l~s~s~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~~  545 (1068)
                      . +-+.||......++......     .+......+ ..-.|++ +|+++....     ++.|++.|+...     ....
T Consensus       161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence            1 23345544443333322211     111100000 0014455 888887765     367999995432     2232


Q ss_pred             EEeccc----cccCCeEEEEEecCCCEEEEEE----------CCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCC
Q 001490          546 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  611 (1068)
Q Consensus       546 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  611 (1068)
                      .+....    ...+...-++++++++++++..          ..+.|.++|..+++.+..+....   .+..++++||++
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk  311 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK  311 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence            222111    0123344599999999998843          22579999999999999988643   478999999999


Q ss_pred             -EEEEEE-CCCeEEEEECCCCceeeec
Q 001490          612 -LLAVIA-NENRIKILETPESNSVDAA  636 (1068)
Q Consensus       612 -~l~~~~-~dg~i~iwd~~~~~~~~~~  636 (1068)
                       +|++.. .++.|.++|..+++.+..+
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             777766 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=6.4e-11  Score=132.91  Aligned_cols=239  Identities=12%  Similarity=0.049  Sum_probs=148.4

Q ss_pred             ccceeeecccCCCCceEEEEcCCCCe--EEEEEcCcC--cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490          299 PKTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  374 (1068)
Q Consensus       299 p~~~~~~l~~h~~~V~~v~~spdg~~--lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  374 (1068)
                      .....+.|..+...+..-+|||||+.  ++++...+|  .|.+.++.+|+....                    ....+.
T Consensus       173 dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l--------------------t~~~g~  232 (428)
T PRK01029        173 DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI--------------------LALQGN  232 (428)
T ss_pred             CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe--------------------ecCCCC
Confidence            34444556656667788899999976  333554443  588888888865432                    223344


Q ss_pred             eEEEEECCCCCEEEEEeC-----CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEE--E
Q 001490          375 VNRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--D  447 (1068)
Q Consensus       375 V~~~~~spdg~~las~~~-----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iw--d  447 (1068)
                      ....+|||||++||..+.     +-.+.+|++.++..-.......++.......+|+|||+. ++++...++...+|  +
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEE
Confidence            556899999999997653     223445777654211111122223334567899999995 23333345654444  5


Q ss_pred             CCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEE
Q 001490          448 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  523 (1068)
Q Consensus       448 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~  523 (1068)
                      +.. +.....+..+...+....|+|  ||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||+.|+..
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             CcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEE
Confidence            542 333455555555666667755  77788776543   368999998876654332 23456778999999998876


Q ss_pred             eeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC
Q 001490          524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  566 (1068)
Q Consensus       524 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  566 (1068)
                      ... .+...|+++|+.+++......+ .   +.+...+|+|-.
T Consensus       389 ~~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~  426 (428)
T PRK01029        389 AGN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP  426 (428)
T ss_pred             ECC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence            543 3467899999988776544432 2   456667787753

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=4.7e-11  Score=118.01  Aligned_cols=341  Identities=13%  Similarity=0.174  Sum_probs=204.5

Q ss_pred             eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEE-cCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC
Q 001490          542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  620 (1068)
Q Consensus       542 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  620 (1068)
                      ..++.++|+.   ..++....-|..+-+++.++|.+++||- .+.++.-..+.... ..++.++.+.++.+.|++|-.+|
T Consensus        15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence            3456677777   7788888888888999999999999995 44455444443322 34688999999999999999999


Q ss_pred             eEEEEECCCC----ceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCC
Q 001490          621 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  696 (1068)
Q Consensus       621 ~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~  696 (1068)
                      ++.-+.+...    ..++....|...+..+-++                      .....+++.+.|..+ .|.      
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~----------------------~~~e~V~s~~~dk~~-~~h------  141 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS----------------------LTHEWVLSTGKDKQF-AWH------  141 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEec----------------------CCceeEEEeccccce-EEE------
Confidence            9998876532    2333344555555555443                      222333333333221 111      


Q ss_pred             cccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCC
Q 001490          697 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  776 (1068)
Q Consensus       697 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (1068)
                                          + +..|..         +--|.                             +.       
T Consensus       142 --------------------c-~e~~~~---------lg~Y~-----------------------------~~-------  155 (404)
T KOG1409|consen  142 --------------------C-TESGNR---------LGGYN-----------------------------FE-------  155 (404)
T ss_pred             --------------------e-eccCCc---------ccceE-----------------------------ee-------
Confidence                                0 000100         00000                             00       


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce
Q 001490          777 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  853 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  853 (1068)
                        ...+++.+.-.  +...|. .|.|..-  +......+.++.+|.+.+++++|.+ ..++|.+|..|..+.+||+.-.+
T Consensus       156 --~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  156 --TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             --ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence              00000011000  222222 2333322  2334567788999999999999999 89999999999999999997654


Q ss_pred             -eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee-----eeecCC--------------------C
Q 001490          854 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-----SLQTPD--------------------G  907 (1068)
Q Consensus       854 -~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~--------------------~  907 (1068)
                       ....+.+|.+.|..+...+--+.|.+++.||.|.+|+.+........     ..+...                    .
T Consensus       231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h  310 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH  310 (404)
T ss_pred             ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence             34677899999999999988899999999999999998764322210     000000                    0


Q ss_pred             ccc-CCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceee----eeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490          908 VMT-LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL----KQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       908 ~~~-~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~----~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~v  980 (1068)
                      |.. .+..+...+-|.-..+...+.+-.+++.|..-...-    ..+...|  ...|+++.+..+-.+|+|+|.|+.|.|
T Consensus       311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~i  390 (404)
T KOG1409|consen  311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKI  390 (404)
T ss_pred             hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEE
Confidence            000 001112222222222222244444555543211110    0012223  457899999888889999999999999


Q ss_pred             EEcCCC
Q 001490          981 HEASNL  986 (1068)
Q Consensus       981 wd~~~~  986 (1068)
                      ||+.+-
T Consensus       391 wd~~~v  396 (404)
T KOG1409|consen  391 WDVRSV  396 (404)
T ss_pred             Eechhh
Confidence            998753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=3.8e-09  Score=115.88  Aligned_cols=248  Identities=15%  Similarity=0.209  Sum_probs=161.8

Q ss_pred             cceEEEEECCCCCEEEEEeC----CcEEEEEEccCC-CcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          373 VSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~----d~~i~vwd~~~~-~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      .....++++|++++|.+...    ++.|..|++... ..+...............++++|+++. ++++...++.|.+++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~~  115 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEEE
Confidence            46778999999999999876    568999998875 233333333323445678999999994 334444689999999


Q ss_pred             CCC-CceeeE---ec----------cCCCcEEEEeeeecCCccEEEEEEc-CCcEEEEeCCCCCc-e---EEe-cCCCCc
Q 001490          448 AVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-R---VDY-DAPGLG  507 (1068)
Q Consensus       448 ~~~-~~~~~~---~~----------~h~~~v~~i~~~~~~~~~~l~s~s~-dg~i~vwd~~~~~~-~---~~~-~~~~~~  507 (1068)
                      +.. |.....   +.          .......++.++|  +++++++... ...|.+|+++.... +   ..+ ...+..
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G  193 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG  193 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence            987 443322   11          1123456677755  7777777653 45799999887662 1   122 234557


Q ss_pred             EEEEEEccCCCEEEEEeeCCCCceeEEEEeCC--CCee--eeEEeccc---cccCCeEEEEEecCCCEEEEEE-CCCeEE
Q 001490          508 CTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVIK  579 (1068)
Q Consensus       508 i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i~  579 (1068)
                      .+.++|+|+++++++...   ..+.|.++++.  ++..  +.......   ........+.++|||++|+++. ..+.|.
T Consensus       194 PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             EEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            889999999999988764   35567777776  4433  22222211   0112578899999999998865 678899


Q ss_pred             EEEcC--CCe--EEEEEeCCCCCCCCceEEEecCCCEEEEEEC-CCeEEEEECC
Q 001490          580 IWDMN--KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP  628 (1068)
Q Consensus       580 iwd~~--~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~  628 (1068)
                      +|++.  +++  .+..+...+.  ....++++|+|++|+++.. ++.|.+|++.
T Consensus       271 vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            99993  343  3344443322  3588999999999998875 6789999774

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.3e-10  Score=128.46  Aligned_cols=227  Identities=12%  Similarity=0.082  Sum_probs=141.1

Q ss_pred             ecCCCcceEEEEECCCCCEEE---EEeCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC---
Q 001490          368 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD---  439 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~la---s~~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~---  439 (1068)
                      +......+..-+|||||+.++   +...+  ..|.+.++.+|+..+    +....+.....+|||||++ ++++...   
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~  254 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN  254 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence            334455677889999998633   33333  368888998876432    3334445567899999995 2333322   


Q ss_pred             -CCcEEEEECCCC---ceeeEeccCCCcEEEEeeeecCCccEEEEEE-cCCcEEEEe--CCC-CCceEEecCCCCcEEEE
Q 001490          440 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWL--YDS-LGARVDYDAPGLGCTRM  511 (1068)
Q Consensus       440 -d~~i~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s-~dg~i~vwd--~~~-~~~~~~~~~~~~~i~~~  511 (1068)
                       +-.+.+|++.++   .......++.+.....+|+|  ||+.|+..+ .+|...+|.  ++. ......+......+...
T Consensus       255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p  332 (428)
T PRK01029        255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP  332 (428)
T ss_pred             cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence             223445777653   32233322333345556655  777777665 467655554  432 22233344444566788


Q ss_pred             EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEEC---CCeEEEEEcCCCeE
Q 001490          512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL  588 (1068)
Q Consensus       512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~  588 (1068)
                      .|+|||+.|+..... .+...|++||+.+++......+ .   ..+....|+|||+.|+..+.   ...|+++|+.+++.
T Consensus       333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            999999999987643 3456799999998876543322 2   35677899999998876442   45788999988776


Q ss_pred             EEEEeCCCCCCCCceEEEecC
Q 001490          589 LTTIDAGGGLPENPRICFNKN  609 (1068)
Q Consensus       589 ~~~~~~~~~~~~v~~v~~s~~  609 (1068)
                      .......   ..+...+|+|-
T Consensus       408 ~~Lt~~~---g~~~~p~Ws~~  425 (428)
T PRK01029        408 RKIVIGS---GEKRFPSWGAF  425 (428)
T ss_pred             EEeecCC---CcccCceecCC
Confidence            5544332   23566788874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=9.7e-11  Score=133.74  Aligned_cols=230  Identities=13%  Similarity=0.095  Sum_probs=146.4

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  377 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  377 (1068)
                      ....+.+..+.+.+...+|||||++|+++...+  ..|.+||+.+|+...                    +....+.+..
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~  247 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA  247 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence            344556666777899999999999776655443  358999998886543                    2222334557


Q ss_pred             EEECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCc
Q 001490          378 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS  452 (1068)
Q Consensus       378 ~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~  452 (1068)
                      .+|||||++|+.. +.++  .|++||+.+++..    .+..+........|+|||+. ++++...++  .|+++|+.+++
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence            8999999998854 3344  6888999987532    34455556677899999995 233333333  58888888877


Q ss_pred             eeeEeccCCCcEEEEeeeecCCccEEEEEEcC-C--cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490          453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  529 (1068)
Q Consensus       453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~  529 (1068)
                      ... +...........|++  ||+.|+..+.+ +  .|.+||+.++........  .......|+|||+.++..... .+
T Consensus       323 ~~~-lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g  396 (430)
T PRK00178        323 AER-VTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QG  396 (430)
T ss_pred             EEE-eecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CC
Confidence            533 221222223345544  67777776643 3  478888887654433222  222356899999999887653 34


Q ss_pred             ceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       530 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      ...+++++... ...+.+..+.   +.+...+|+|
T Consensus       397 ~~~l~~~~~~g-~~~~~l~~~~---g~~~~p~ws~  427 (430)
T PRK00178        397 RGVLMLVSING-RVRLPLPTAQ---GEVREPSWSP  427 (430)
T ss_pred             ceEEEEEECCC-CceEECcCCC---CCcCCCccCC
Confidence            56788888754 3333444333   4566666765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=5.4e-11  Score=134.72  Aligned_cols=229  Identities=14%  Similarity=0.097  Sum_probs=143.5

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcC--cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEE
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  378 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~  378 (1068)
                      ...+.+..+.+.+...+|||||++++.+...++  .|.+||+.+++....                    ....+.....
T Consensus       208 ~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~  267 (448)
T PRK04792        208 YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAP  267 (448)
T ss_pred             CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCe
Confidence            334556666778899999999997665554443  588889988765321                    1112234468


Q ss_pred             EECCCCCEEEEE-eCCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001490          379 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR  453 (1068)
Q Consensus       379 ~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~  453 (1068)
                      +|||||+.|+.. +.++  .|++||+.+++..    .+..+.......+|+|||+. ++++...++  .|+++|+.+++.
T Consensus       268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence            999999988764 4555  4888898887532    34455556778999999995 333333333  577778887765


Q ss_pred             eeEeccCCCcEEEEeeeecCCccEEEEEEc-CCc--EEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          454 TYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      .. +..........+|++  ||++|+..+. ++.  |.++|+.++..... ... .......|+|||+.++..... .+.
T Consensus       343 ~~-Lt~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g~  416 (448)
T PRK04792        343 SR-LTFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QGK  416 (448)
T ss_pred             EE-EecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CCc
Confidence            43 322222233445654  6777766654 443  45567666554332 211 122345899999999877653 345


Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEec
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      ..+++++. +|.....+..+.   +.+...+|+|
T Consensus       417 ~~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp  446 (448)
T PRK04792        417 QVLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP  446 (448)
T ss_pred             eEEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence            67888887 555555565444   5566677776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3.4e-10  Score=128.28  Aligned_cols=223  Identities=15%  Similarity=0.098  Sum_probs=142.2

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCc--
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  442 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~--  442 (1068)
                      +..+...+.+.+|||||++|+..+.+   ..|++||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            33466788999999999999987543   368999998876321    2222334457899999995 3344555664  


Q ss_pred             EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CCc--EEEEeCCCCCceEEecCCCCcEEEEEEccCCCE
Q 001490          443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  519 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~  519 (1068)
                      |+++|+.+++. ..+..+.......+|++  ||+.|+..+. ++.  |.++|+.+++.... ..........+|+|||++
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCE
Confidence            88889887764 44555555566677765  6677766553 444  55566665554332 222223345789999999


Q ss_pred             EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC-C--eEEEEEcCCCeEEEEEeCCC
Q 001490          520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG  596 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g--~i~iwd~~~~~~~~~~~~~~  596 (1068)
                      ++..+.. .+...|.++|+.+++... +....    ......|+|+|++|+..+.+ |  .+++++. +|.....+....
T Consensus       364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~  436 (448)
T PRK04792        364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ  436 (448)
T ss_pred             EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence            9887653 234568888988886533 22211    12234799999998876543 3  3777786 566666665432


Q ss_pred             CCCCCceEEEec
Q 001490          597 GLPENPRICFNK  608 (1068)
Q Consensus       597 ~~~~v~~v~~s~  608 (1068)
                        ..+...+|+|
T Consensus       437 --g~~~~p~Wsp  446 (448)
T PRK04792        437 --GEVKSPAWSP  446 (448)
T ss_pred             --CCcCCCccCC
Confidence              2356677776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=4.2e-10  Score=128.52  Aligned_cols=223  Identities=14%  Similarity=0.109  Sum_probs=142.9

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--c
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  442 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~  442 (1068)
                      +..+...+...+|||||++||..+.+   ..|.+||+.+++..    .+....+.+...+|+|||+. ++++...++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~----~l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE----QITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE----EccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            33466789999999999999887644   36999999987642    23333445567899999995 333444444  6


Q ss_pred             EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CC--cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCE
Q 001490          443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  519 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~  519 (1068)
                      |++||+.+++.. .+..+........|++  ||+.|+..+. +|  .|.++++.+++..... ..........|+|||+.
T Consensus       269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        269 IYVMDLASRQLS-RVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKT  344 (430)
T ss_pred             EEEEECCCCCeE-EcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence            888899887653 4555555555566655  6677666553 34  4667777666543322 22223345789999999


Q ss_pred             EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEeCCC
Q 001490          520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG  596 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~  596 (1068)
                      ++..... ++...|.+||+.+++... +....    ......|+|+|+.++..+.+   ..|++++... .....+....
T Consensus       345 i~~~~~~-~~~~~l~~~dl~tg~~~~-lt~~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~  417 (430)
T PRK00178        345 LVMVHRQ-DGNFHVAAQDLQRGSVRI-LTDTS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ  417 (430)
T ss_pred             EEEEEcc-CCceEEEEEECCCCCEEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence            9887643 234569999998876533 22211    12245899999999886643   3577777753 3334444322


Q ss_pred             CCCCCceEEEec
Q 001490          597 GLPENPRICFNK  608 (1068)
Q Consensus       597 ~~~~v~~v~~s~  608 (1068)
                        ..+...+|+|
T Consensus       418 --g~~~~p~ws~  427 (430)
T PRK00178        418 --GEVREPSWSP  427 (430)
T ss_pred             --CCcCCCccCC
Confidence              2355666766

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.33  E-value=1.3e-10  Score=114.61  Aligned_cols=163  Identities=18%  Similarity=0.331  Sum_probs=114.6

Q ss_pred             EEEEECCCCCEEEEEeC----------CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490          376 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       376 ~~~~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i  445 (1068)
                      ..+.|+|+|++|++-..          -+...+|.++..........+ ...++|.+++|+|+|+.+.++.|..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            46889999999886543          134566666433322222122 2345799999999999755666767889999


Q ss_pred             EECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490          446 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  522 (1068)
Q Consensus       446 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~  522 (1068)
                      ||++ ++.+..+.  ...+..+.|+|  +|++|++++.+   |.|.+||.+..+.+....  ...+..++|+|||+++++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence            9986 66666664  56778888876  77899988754   679999999666655443  335789999999999998


Q ss_pred             EeeC--CCCceeEEEEeCCCCeeeeEE
Q 001490          523 CGTS--KEGESFLVEWNESEGAIKRTY  547 (1068)
Q Consensus       523 ~~~~--~~~~~~i~~wd~~~~~~~~~~  547 (1068)
                      +...  ...++.+.||+. .|+.+...
T Consensus       161 a~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEeccceeccccEEEEEe-cCeEeEec
Confidence            8753  223566899997 45555443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.33  E-value=8.1e-11  Score=116.17  Aligned_cols=266  Identities=13%  Similarity=0.183  Sum_probs=175.8

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCC--E
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS--L  386 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~--~  386 (1068)
                      ..+-|.+|.|..+|. +||+|..+|.|.++.-+.... ...++... .+...+.|....--.-+..|..+.|.+++.  .
T Consensus        24 eadiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   24 EADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-GEYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hhcceeeEEeecccc-eEeecCCCCeEEEeecccccc-cceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            345799999999998 679999999999998643222 11111100 011111222111112346799999998754  4


Q ss_pred             EEEEeCCcEEEEEEccCCCccc------------------c--------------eEE-EccccccEEEEEEcCCCCcEE
Q 001490          387 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS  433 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~------------------~--------------~~~-~~~h~~~v~~l~~s~d~~~~~  433 (1068)
                      ++..+.|.+|++|.+.......                  .              .+. -.+|+.-|.++.++.|+.  .
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t  178 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T  178 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence            5566789999999986432211                  0              001 136888899999999998  6


Q ss_pred             EEEEeCCCcEEEEECCCCcee---eEeccC-----CCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce------E
Q 001490          434 VITCGDDKTIKVWDAVTGSRT---YSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------V  499 (1068)
Q Consensus       434 l~s~~~d~~i~iwd~~~~~~~---~~~~~h-----~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~------~  499 (1068)
                      ++++. |=.|.+|+++--..-   ..++.+     ...|++..|+|.. ...++-.+..|+|++.|++.....      .
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~-cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH-CNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH-ccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            77654 778999998743322   222222     3457777888864 357888889999999999843211      1


Q ss_pred             Eec----------CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC-CCeeeeEEeccccc---------cCC---
Q 001490          500 DYD----------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQ---------HNS---  556 (1068)
Q Consensus       500 ~~~----------~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~---------~~~---  556 (1068)
                      ...          ..-..|..+.|+++|+++++-.     -.+|.+||+. ..+++.+++-|..-         .+.   
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd  331 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD  331 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence            111          1112578899999999999853     3579999994 56677777665421         112   


Q ss_pred             eEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001490          557 VSVVHFDTAKDQILAAGDDHVIKIWDMNKV  586 (1068)
Q Consensus       557 v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  586 (1068)
                      -..++|+.++.++++|+..+.+++++...|
T Consensus       332 KFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  332 KFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             eeEEEEcCCcceEecccccceEEEecCCCC
Confidence            245789999999999999999999996554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.8e-08  Score=101.85  Aligned_cols=303  Identities=12%  Similarity=0.147  Sum_probs=186.8

Q ss_pred             CCcEEEEeCCCCCceE---EecCCCCcEEEEEEccCCCEEEEEeeCCC-CceeEEEEeCCCCeeeeEEeccccccCCeEE
Q 001490          484 DGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSV  559 (1068)
Q Consensus       484 dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~  559 (1068)
                      ++-|.+|++++.....   ..-.....++-++|+|+++.|.++...++ +.-..+-||.++|++...-.... .....+.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeE
Confidence            5679999998544433   22334457788999999999999887533 33334445555566532222111 1234488


Q ss_pred             EEEecCCCEEEEEE-CCCeEEEEEcCC-CeEEE---EEeCCCC-------CCCCceEEEecCCCEEEEEEC-CCeEEEEE
Q 001490          560 VHFDTAKDQILAAG-DDHVIKIWDMNK-VQLLT---TIDAGGG-------LPENPRICFNKNGTLLAVIAN-ENRIKILE  626 (1068)
Q Consensus       560 ~~~~~~~~~l~~~s-~dg~i~iwd~~~-~~~~~---~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd  626 (1068)
                      +++++++++++++. .-|.|.++-++. |.+..   .+...+.       .+.+....+.|++++|++..- .-.|.+|+
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            99999999999976 568899999865 44332   2222211       122677889999999888754 34688888


Q ss_pred             CCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCC
Q 001490          627 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS  706 (1068)
Q Consensus       627 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  706 (1068)
                      +..++....-..                                                                .+  
T Consensus       174 ~~dg~L~~~~~~----------------------------------------------------------------~v--  187 (346)
T COG2706         174 LDDGKLTPADPA----------------------------------------------------------------EV--  187 (346)
T ss_pred             cccCcccccccc----------------------------------------------------------------cc--
Confidence            886533211110                                                                00  


Q ss_pred             ccccccEEEEEEecCCceEEEeec-CccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEE
Q 001490          707 KVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  785 (1068)
Q Consensus       707 ~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  785 (1068)
                       ......+.++|+|+++......+ +++|.+|..+...    ++...-..+   +      .+..++   .......++.
T Consensus       188 -~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~----g~~~~lQ~i---~------tlP~dF---~g~~~~aaIh  250 (346)
T COG2706         188 -KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV----GKFEELQTI---D------TLPEDF---TGTNWAAAIH  250 (346)
T ss_pred             -CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC----ceEEEeeee---c------cCcccc---CCCCceeEEE
Confidence             02334567899999998766665 7899999876531    111110000   0      111112   1355677899


Q ss_pred             EecCCCEEEEEeC--CeEEEEEccC--cee--EEEecCCCCCeEEEEEeCCCCCEEEEEECCC-eEEEEEcC--Cceeee
Q 001490          786 LSKNDAYLFSASG--GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNAR--SSEVIS  856 (1068)
Q Consensus       786 ~s~dg~~l~~~~d--g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~--~~~~~~  856 (1068)
                      +++||++|.++..  +.|.+|.+..  ++.  +.....+...-+...|++ ++++|+++..++ .|.+|...  +|++..
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            9999999999873  5788887753  332  222333444578899999 888888888664 78888664  555443


Q ss_pred             eec-ccccCeEEEEEc
Q 001490          857 KLE-GHSKRVTGLVFS  871 (1068)
Q Consensus       857 ~~~-~h~~~V~~l~~s  871 (1068)
                      ... .......||.|.
T Consensus       330 ~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         330 LGRYAVVPEPVCVKFL  345 (346)
T ss_pred             cccccCCCCcEEEEEc
Confidence            332 233445666664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4.8e-10  Score=117.75  Aligned_cols=286  Identities=9%  Similarity=0.118  Sum_probs=189.3

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcC-----------cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGTN-----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  377 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs~-----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  377 (1068)
                      |. .|..+.|||+.++| +|=+.           ...++|||+.+|...+.+.+                +.+....-.-
T Consensus       249 Hp-~Vq~idfSP~EkYL-VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~----------------~~~~~~~WP~  310 (698)
T KOG2314|consen  249 HP-GVQFIDFSPNEKYL-VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV----------------IKSPYLKWPI  310 (698)
T ss_pred             CC-CceeeecCCccceE-EEecCCccccCcccCCCceEEEEEccccchhcceec----------------cCCCccccce
Confidence            54 79999999999855 54332           14699999999998876432                1222222334


Q ss_pred             EEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-----CCcEEEEECCCCc
Q 001490          378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVTGS  452 (1068)
Q Consensus       378 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-----d~~i~iwd~~~~~  452 (1068)
                      +.||.|++|+|--..+ +|.||+..+-..+.. ..  -.-..|....|+|.+.  +||--..     -..+.+-.+.+++
T Consensus       311 frWS~DdKy~Arm~~~-sisIyEtpsf~lld~-Ks--lki~gIr~FswsP~~~--llAYwtpe~~~~parvtL~evPs~~  384 (698)
T KOG2314|consen  311 FRWSHDDKYFARMTGN-SISIYETPSFMLLDK-KS--LKISGIRDFSWSPTSN--LLAYWTPETNNIPARVTLMEVPSKR  384 (698)
T ss_pred             EEeccCCceeEEeccc-eEEEEecCceeeecc-cc--cCCccccCcccCCCcc--eEEEEcccccCCcceEEEEecCccc
Confidence            7899999999987665 599999876332211 01  1234688899999988  5554332     2357777778888


Q ss_pred             eeeEeccCCCcEEEEeeeecCCccEEEEEEc----------CCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490          453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV----------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  522 (1068)
Q Consensus       453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~  522 (1068)
                      .+++-.-|  .|..+.+++..+|.+|+.--.          -..+.|+.++........-.-...|...+|-|.|..+++
T Consensus       385 ~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  385 EIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             eeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEE
Confidence            77765444  366677777888888876421          123556666555544444444557888999999998887


Q ss_pred             EeeCCCCceeEEEEeCCC-C---eeeeEEeccccccCCeEEEEEecCCCEEEEE---ECCCeEEEEEcCCCeEEEEEeCC
Q 001490          523 CGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       523 ~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                      .+... ...++..|.+++ .   +.+..+..     ...+.+.|+|.|++++.+   |..|.+.++|..-.....+- ..
T Consensus       463 i~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~  535 (698)
T KOG2314|consen  463 ISGNT-VKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SP  535 (698)
T ss_pred             EEccc-cccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Cc
Confidence            76533 366788888773 2   23333332     457889999999999875   46789999998753322221 11


Q ss_pred             CCCCCCceEEEecCCCEEEEEEC------CCeEEEEECC
Q 001490          596 GGLPENPRICFNKNGTLLAVIAN------ENRIKILETP  628 (1068)
Q Consensus       596 ~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~  628 (1068)
                      .+ ...+.+.|.|.|+++++++.      |...++|+..
T Consensus       536 eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  536 EH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             cc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence            11 23578999999999999876      3445566655

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=3.9e-10  Score=128.87  Aligned_cols=210  Identities=15%  Similarity=0.083  Sum_probs=139.4

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCC---cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--c
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  442 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~  442 (1068)
                      +..+...+...+|||||++||.+..+   ..|++||+.+++..    .+..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            34466678999999999999988654   47999999987532    23345566778999999985 334444444  5


Q ss_pred             EEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEc-CC--cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCE
Q 001490          443 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  519 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~  519 (1068)
                      |++||+.++.. ..+..+........|++  ||+.|+..+. ++  .|.++++.+.+.. .+.........+.|+|||++
T Consensus       260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence            89999888764 34444544444556654  7777776654 33  5777777665433 33334456677899999999


Q ss_pred             EEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCC---eEEEEEcCCCeEEEEEe
Q 001490          520 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID  593 (1068)
Q Consensus       520 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~  593 (1068)
                      ++...... +...|.+||+.++... .+...    .......|+|++++|+.++.++   .+++.+. ++.....+.
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~  405 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP  405 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeE-EccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence            99887533 3557999999886543 22221    1234568999999998876554   3555554 344444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=1.5e-10  Score=132.23  Aligned_cols=216  Identities=19%  Similarity=0.160  Sum_probs=142.0

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  377 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~  377 (1068)
                      ....+.+..+...+...+|||||++++.+...+  ..|.+||+.+++...                    +..+...+.+
T Consensus       179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~  238 (417)
T TIGR02800       179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA  238 (417)
T ss_pred             CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence            344566666776899999999999665544333  479999999886543                    2234456677


Q ss_pred             EEECCCCCEEEEE-eCC--cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-CCC--cEEEEECCCC
Q 001490          378 VVWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG  451 (1068)
Q Consensus       378 ~~~spdg~~las~-~~d--~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~  451 (1068)
                      ++|+|||+.|+.. +.+  ..|++||+.++...    .+..+........|+|||++  |+..+ .++  .|+++|+.++
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence            9999999988754 333  35889999886532    33445555567899999994  44433 333  5888898777


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcCC---cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCC
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  528 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~  528 (1068)
                      +.. .+..+...+....|++  +|++++.++.++   .|.+||+.+...... ... .......|+|||+.|+.....+ 
T Consensus       313 ~~~-~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg~~l~~~~~~~-  386 (417)
T TIGR02800       313 EVR-RLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNGRMILYATTRG-  386 (417)
T ss_pred             CEE-EeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEeCC-
Confidence            643 4444555566667755  777888887776   788888877543322 221 2334568999999998877543 


Q ss_pred             CceeEEEEeCCCCeeeeEEe
Q 001490          529 GESFLVEWNESEGAIKRTYQ  548 (1068)
Q Consensus       529 ~~~~i~~wd~~~~~~~~~~~  548 (1068)
                      +...+++.+.. +.....+.
T Consensus       387 ~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       387 GRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             CcEEEEEEECC-CceeeECC
Confidence            34567776643 44444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=3.4e-10  Score=111.87  Aligned_cols=247  Identities=15%  Similarity=0.162  Sum_probs=152.6

Q ss_pred             CcceEEEEECCCCCEEEEEeCCcEEEEEEccCCC--cccceEEEcccc------------ccEEEEEEcCCCCcEEEEEE
Q 001490          372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHV------------GNVNDLAFSAPCKQISVITC  437 (1068)
Q Consensus       372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~d~~~~~l~s~  437 (1068)
                      .+-|.++.|..+|.+||+|..+|.|.++.-+...  .......+..|.            ..|..+.|.+++....++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3578899999999999999999999998654322  122222333343            46889999998876677778


Q ss_pred             eCCCcEEEEECCCCceee-----EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEE
Q 001490          438 GDDKTIKVWDAVTGSRTY-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRM  511 (1068)
Q Consensus       438 ~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~  511 (1068)
                      +.|++|++|.+.......     ..++..+.+.++..        .+.+..|-.+..      .+.. .-..|..-|.++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~--------p~~~~~~~~vea------~prRv~aNaHtyhiNSI  170 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL--------PVEGRHDLEVEA------SPRRVYANAHTYHINSI  170 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeec--------eeeccccceeee------eeeeeccccceeEeeee
Confidence            889999999876433221     11122223333321        111111111100      0111 123456679999


Q ss_pred             EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE---eccc--cccCCeEEEEEecCC-CEEEEEECCCeEEEEEcCC
Q 001490          512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY---QGLQ--LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNK  585 (1068)
Q Consensus       512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~---~~~~--~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~  585 (1068)
                      +++.|+..++++-     +-.|.+|+++--..--.+   +.+.  .-...|++..|+|.. +.++-.+..|+|++-|++.
T Consensus       171 S~NsD~Et~lSAD-----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  171 SVNSDKETFLSAD-----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eecCccceEeecc-----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            9999999999874     677999998743221111   1111  001357888999975 4555588899999999984


Q ss_pred             CeEE------EEEeCC--------CCCCCCceEEEecCCCEEEEEECCCeEEEEECC-CCceeeeccc
Q 001490          586 VQLL------TTIDAG--------GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGV  638 (1068)
Q Consensus       586 ~~~~------~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~  638 (1068)
                      ..+-      ...+..        .-...|..+.|+++|+++++-.. -+|++||+. ..+++.+...
T Consensus       246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v  312 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV  312 (433)
T ss_pred             hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence            3221      111110        11235778999999999997665 689999994 4455544443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=1.5e-10  Score=116.70  Aligned_cols=208  Identities=11%  Similarity=0.104  Sum_probs=157.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEccCce----eEEEecCCCCCeEEEEEeCCCCCEEEEEECC--CeEEEEEcC
Q 001490          777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----TILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNAR  850 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~  850 (1068)
                      ....|..++. .||.++.+.++|.+.+|..+.+.    .+..+..+ ..+..+.-++.+..++|+|+..  ..+.|||+.
T Consensus       104 ~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  104 GTKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             ccccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            3455555554 36666666678999999998443    22233322 4555666666566788889998  899999999


Q ss_pred             Cceeeeeeccc---------ccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEE
Q 001490          851 SSEVISKLEGH---------SKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  919 (1068)
Q Consensus       851 ~~~~~~~~~~h---------~~~V~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  919 (1068)
                      ..+.+..-+.-         .-.++++.|-+.  ...||+++.-+.|++||...+.    +++..+.-..   .+++++.
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E---~~is~~~  254 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE---NPISSTG  254 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc---Ccceeee
Confidence            88655443321         123567899887  8899999999999999998644    2222222222   3699999


Q ss_pred             EeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          920 FHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       920 ~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      .-|+|+++.++ .-+.+..+|.++++.....+.+-.+.|+++...|.+++|+++|-|+.|||+|+.+..++...+
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            99999999986 568899999999999887788889999999999999999999999999999999988876555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.30  E-value=2.8e-10  Score=112.26  Aligned_cols=163  Identities=15%  Similarity=0.146  Sum_probs=112.5

Q ss_pred             EEEEEcCCCCcEEEEEEeC--------CCcEEEEECC-CCceeeEecc-CCCcEEEEeeeecCCccEEEEEEcCCcEEEE
Q 001490          421 NDLAFSAPCKQISVITCGD--------DKTIKVWDAV-TGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAW  490 (1068)
Q Consensus       421 ~~l~~s~d~~~~~l~s~~~--------d~~i~iwd~~-~~~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vw  490 (1068)
                      ..+.|+++|+.+++.+...        -+...+|.+. .+.....+.- ..++|.+++|+|+++.-.++.|..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            4688999999744444411        1234555542 2333444432 4457999999885432223445567899999


Q ss_pred             eCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEE
Q 001490          491 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL  570 (1068)
Q Consensus       491 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  570 (1068)
                      |++ ......+  ....+..+.|+|+|+++++++.++ ..+.|.+||.++.+.+..+..     ..+..++|+|+|++++
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~~~~~i~~~~~-----~~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVRKKKKISTFEH-----SDATDVEWSPDGRYLA  159 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECCCCEEeecccc-----CcEEEEEEcCCCCEEE
Confidence            996 3333333  456778999999999999987532 356799999998888776653     3578999999999999


Q ss_pred             EEE------CCCeEEEEEcCCCeEEEEEe
Q 001490          571 AAG------DDHVIKIWDMNKVQLLTTID  593 (1068)
Q Consensus       571 ~~s------~dg~i~iwd~~~~~~~~~~~  593 (1068)
                      +++      .|+.++||+.. |+.+....
T Consensus       160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             EEEeccceeccccEEEEEec-CeEeEecc
Confidence            976      47889999984 66665544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.29  E-value=6.8e-11  Score=116.87  Aligned_cols=357  Identities=15%  Similarity=0.137  Sum_probs=228.4

Q ss_pred             eeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE--EecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      .++.++||.+.++....-+..+  -+++.+.|.++|+|--+...+..  .......+++++.+.++.+.|+++-.    .
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n   89 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N   89 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence            4567789999888887766554  59999999999999654443332  23334568899999999999998876    4


Q ss_pred             eeEEEEeCC----CCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEE
Q 001490          531 SFLVEWNES----EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  606 (1068)
Q Consensus       531 ~~i~~wd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  606 (1068)
                      +.+.-+.+.    .....+.+..|.   ..+..+-|+-..+++++.+.|..+.---.+.+..+........   ...+.+
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~  163 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF  163 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence            456666443    345566666777   8999999999899999999988776555555555543322211   111112


Q ss_pred             ecCCCEEEEEECCCeEEEEECC--CCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccc
Q 001490          607 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  684 (1068)
Q Consensus       607 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  684 (1068)
                      .-.  +..+|...|.|.+-.+.  .-..+..+.+|.+.+.++.+.                      +..+.+.++..|.
T Consensus       164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~  219 (404)
T KOG1409|consen  164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH  219 (404)
T ss_pred             eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence            111  55566666777665554  346788899999999999996                      5677889999999


Q ss_pred             cceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCcccee-----ccCCccc
Q 001490          685 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRLY  759 (1068)
Q Consensus       685 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~  759 (1068)
                      .+.+||+........     ...+|...+..+...+--+.+++++.||.|.+|+++.......+....     ...+..|
T Consensus       220 ~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw  294 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW  294 (404)
T ss_pred             ceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence            999999875443322     234588889999888889999999999999999997654432222211     1122233


Q ss_pred             CCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcc-------CceeEEEecCCCCCeEEEEEeC
Q 001490          760 QPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP  829 (1068)
Q Consensus       760 ~~~~~~~~~~~~~~~~--~~-~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~  829 (1068)
                      +...--......+..+  .+ ...+...+-+.-..+...+.+-.+|+-|.-       +..++..+......|+++.+..
T Consensus       295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe  374 (404)
T KOG1409|consen  295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE  374 (404)
T ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence            2211100000000000  01 112222222222223333333345554432       1122444444445899999988


Q ss_pred             CCCCEEEEEECCCeEEEEEcCC
Q 001490          830 HDNNVIAIGMDDSTILIYNARS  851 (1068)
Q Consensus       830 ~d~~~lasg~~dg~v~iwd~~~  851 (1068)
                       .-.+|++++.|..|+|||+..
T Consensus       375 -tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  375 -TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             -hccceeecCCceEEEEEechh
Confidence             777999999999999999874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.28  E-value=6.2e-10  Score=118.78  Aligned_cols=194  Identities=13%  Similarity=0.182  Sum_probs=156.1

Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEc------C------------CCCcEEEEEEeCCCc
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT  442 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s------~------------d~~~~~l~s~~~d~~  442 (1068)
                      .|-+.|+|....||.+++||+..++..........-.+..++..|.      |            .+...+++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3557899999999999999999987544322222233444555552      2            122337888999999


Q ss_pred             EEEEECCCCceeeEec--cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEE
Q 001490          443 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  520 (1068)
Q Consensus       443 i~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l  520 (1068)
                      |.+|++..|+....+.  .|.+.|.++.++.  +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999888775  5999999988754  45689999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC-----CCEEEE-EECCCeEEEEEcCC
Q 001490          521 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK  585 (1068)
Q Consensus       521 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~s~dg~i~iwd~~~  585 (1068)
                      ++++.      .|.+||+++++.+..|.||.   ++|+++.|..+     |.++++ ...+..+.+|-+..
T Consensus       160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98864      59999999999999999999   99999999887     777777 44566678886654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.21  E-value=2.2e-08  Score=112.40  Aligned_cols=148  Identities=13%  Similarity=0.040  Sum_probs=96.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  512 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  512 (1068)
                      .++.++.++.|..+|..+|+.+...............    ++..++.++.+|.+..+|..+++................
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            5777888999999999999998776544332222222    445788889999999999998888776554432111111


Q ss_pred             EccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccc--CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE
Q 001490          513 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  590 (1068)
Q Consensus       513 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~  590 (1068)
                      .  .+..++.+..    ++.++.||..+|+.+-.+.......  ....+....  +..++.+..+|.+..+|.++|+.+.
T Consensus       143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W  214 (377)
T TIGR03300       143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW  214 (377)
T ss_pred             E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence            2  2344555443    5679999999998877665432000  000111121  2467788889999999999998765


Q ss_pred             EE
Q 001490          591 TI  592 (1068)
Q Consensus       591 ~~  592 (1068)
                      ..
T Consensus       215 ~~  216 (377)
T TIGR03300       215 EQ  216 (377)
T ss_pred             ee
Confidence            54

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.19  E-value=7.5e-08  Score=108.06  Aligned_cols=208  Identities=10%  Similarity=0.073  Sum_probs=125.8

Q ss_pred             eCCeEEEEEccCceeEEEecCCCCCe-----EEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc----C---
Q 001490          797 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R---  864 (1068)
Q Consensus       797 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~----~---  864 (1068)
                      .++.+..||.++|+.+..+.......     .+..+.  + ..++.+..+|.+..+|..+|+.+........    .   
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            36677777777777766654332211     112222  3 3677788899999999999987654321100    0   


Q ss_pred             ---e-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEE
Q 001490          865 ---V-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  939 (1068)
Q Consensus       865 ---V-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd  939 (1068)
                         + ....+  .+..+..++.+|.++.||..+++..-...   ...       .....  .++..+.+ ..++.++.+|
T Consensus       230 ~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d  295 (377)
T TIGR03300       230 LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALD  295 (377)
T ss_pred             hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEE
Confidence               0 01112  34577778889999999999886433211   111       11122  23444544 6789999999


Q ss_pred             CCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490          940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus       940 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
                      ..+|+.+-...........+...  .+.+|++++.+|.|+++|..+|+.+.++....        ..+... .++.   +
T Consensus       296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~  361 (377)
T TIGR03300       296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---G  361 (377)
T ss_pred             CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---C
Confidence            99998764421111112222222  46688899999999999999999998877221        111111 1122   3


Q ss_pred             CEEEEEeCCCcEEEEe
Q 001490         1020 TQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus      1020 ~~l~~~~~dg~i~~w~ 1035 (1068)
                      +.|++++.||.|+.|.
T Consensus       362 ~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       362 DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             CEEEEEeCCceEEEeC
Confidence            5689999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.17  E-value=6.2e-09  Score=111.33  Aligned_cols=190  Identities=18%  Similarity=0.261  Sum_probs=148.3

Q ss_pred             eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE--------------------CCC
Q 001490          324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--------------------SPD  383 (1068)
Q Consensus       324 ~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~--------------------spd  383 (1068)
                      .++|..+.||.++|||+.+++....+.-                ...-++.-.+..|                    +.|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~   69 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD   69 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence            4779999999999999998876653210                0001122223333                    224


Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  463 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~  463 (1068)
                      -..+|-|...|.|.+|++..|+..... .-..|.+.|.++.++.+-.  .+.+++.|+.+..|+..+++.++.+++....
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL  146 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence            456778888999999999998754432 3357999999999998888  8999999999999999999999999999999


Q ss_pred             EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccC-----CCEEEEEeeCCCCceeEEEEeC
Q 001490          464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-----~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      +.++++++  ||..+++++  +.|++||+++.+....+.+|.++|.+++|..+     |.+++++..-   +..+.+|-+
T Consensus       147 ~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~---~r~i~~w~v  219 (541)
T KOG4547|consen  147 VSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA---ERGITVWVV  219 (541)
T ss_pred             cceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc---ccceeEEEE
Confidence            99999876  678888876  68999999999999999999999999999887     7788776532   334666654


Q ss_pred             C
Q 001490          539 S  539 (1068)
Q Consensus       539 ~  539 (1068)
                      .
T Consensus       220 ~  220 (541)
T KOG4547|consen  220 E  220 (541)
T ss_pred             E
Confidence            4

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=1.1e-07  Score=117.97  Aligned_cols=255  Identities=11%  Similarity=0.093  Sum_probs=161.6

Q ss_pred             eEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecC--C------------CCCeEEEEEeCCCCCEEEEEE-CCCeE
Q 001490          782 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI  844 (1068)
Q Consensus       782 ~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v  844 (1068)
                      ..+++++++..+.++.  ++.|+++|.. ++.+..+..  .            -.....+++++ ++..|+++. ..+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            5688988655454444  5889999986 444433332  1            12357899998 666555554 45789


Q ss_pred             EEEEcCCceeeeeeccc-----------------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeee---ee
Q 001490          845 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ  903 (1068)
Q Consensus       845 ~iwd~~~~~~~~~~~~h-----------------~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~  903 (1068)
                      +++|..++.. .++.+-                 -.....++|+| ++.++++.+.++.|++||..++......-   ..
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999887653 333210                 11346799999 56677777888999999998765322100   00


Q ss_pred             cCCCcc---cCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceeeeee------------ccC--------CCcCEE
Q 001490          904 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS  958 (1068)
Q Consensus       904 ~~~~~~---~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~~~~------------~~~--------h~~~v~  958 (1068)
                      ...+..   ........++|+|+|..|.+  ..++.|++||+.++......            +..        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000100   00124567999999986655  46789999999876532110            000        011346


Q ss_pred             EEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccc-cCCC--CccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490          959 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPT--TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus       959 ~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
                      .++|+++|..+++-+.++.|++||..++........... ...+  ....-..+..++++| +++.+++-+.+++|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            899999999888888899999999998877644321110 0000  001113567899999 688888888999999999


Q ss_pred             CCCCC
Q 001490         1036 PNEPG 1040 (1068)
Q Consensus      1036 ~~~~~ 1040 (1068)
                      +....
T Consensus       887 ~~~~~  891 (1057)
T PLN02919        887 LNKGE  891 (1057)
T ss_pred             CCCCc
Confidence            96543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=2.3e-08  Score=111.35  Aligned_cols=208  Identities=15%  Similarity=0.039  Sum_probs=131.1

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcC---cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      ....+.+.... .+...+|||||+++++..+.   +..|.++|+.+|+...                    +....+.+.
T Consensus       178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~  236 (419)
T PRK04043        178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLV  236 (419)
T ss_pred             CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEE
Confidence            33344444333 77889999999864454333   3569999998887653                    222345566


Q ss_pred             EEEECCCCCEEEEEeC---CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCC
Q 001490          377 RVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG  451 (1068)
Q Consensus       377 ~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~  451 (1068)
                      ..+|||||+.|+....   +..|.++|+.+++. +   .+..+........|+|||+.+++.+ ...+  .|.+.|+.+|
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIFMKKLNSG  311 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEEEEECCCC
Confidence            7889999998876532   35788889888753 2   2334443344568999999644443 2223  6888899888


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcC---------CcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEE
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  522 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~  522 (1068)
                      +..+... ....  ...|  ++||+.|+..+..         ..|.+.|++++.... +... .......|+|||+.++.
T Consensus       312 ~~~rlt~-~g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        312 SVEQVVF-HGKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             CeEeCcc-CCCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEE
Confidence            7643322 1111  2255  4477777776644         257777877765433 2222 23335889999999988


Q ss_pred             EeeCCCCceeEEEEeCCCC
Q 001490          523 CGTSKEGESFLVEWNESEG  541 (1068)
Q Consensus       523 ~~~~~~~~~~i~~wd~~~~  541 (1068)
                      .... .+...+.+.++...
T Consensus       385 ~~~~-~~~~~L~~~~l~g~  402 (419)
T PRK04043        385 IKYL-GNQSALGIIRLNYN  402 (419)
T ss_pred             EEcc-CCcEEEEEEecCCC
Confidence            7654 34566888887544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.07  E-value=9.1e-08  Score=118.62  Aligned_cols=260  Identities=11%  Similarity=0.069  Sum_probs=162.7

Q ss_pred             EEEEEecC-CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001490          714 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  792 (1068)
Q Consensus       714 ~~l~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  792 (1068)
                      ..++++++ +..+++-..++.|++++.........+..   ..   .....|.      +. .+.-.....+++++++..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g~---~G~~dG~------~~-~a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---GE---EGLRDGS------FE-DATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---CC---cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence            45778764 55666666678888888653211000000   00   0000010      00 012234678999999987


Q ss_pred             EEEEe--CCeEEEEEccCceeEEEecCC-----------------CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce
Q 001490          793 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  853 (1068)
Q Consensus       793 l~~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  853 (1068)
                      |++++  ++.|+++|..++.. .++.+.                 -.....++|+|+++.++++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            77776  47799999877643 333210                 11346899999667777777788999999998765


Q ss_pred             eeeeecc---------c------ccCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeeeee--------eecCC---
Q 001490          854 VISKLEG---------H------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTPD---  906 (1068)
Q Consensus       854 ~~~~~~~---------h------~~~V~~l~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~~---  906 (1068)
                      .. .+.+         +      -.....|+++|||++ +++-+.++.|++||+.++......-        +....   
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            42 1111         1      123567999999984 4555667899999998765321100        00000   


Q ss_pred             Cc--ccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccC------------CCcCEEEEEEecCCCEEEE
Q 001490          907 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT  971 (1068)
Q Consensus       907 ~~--~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t  971 (1068)
                      +.  .........++++++|.++++ ..+++|++||..++......-.+            .-.....+++++||+.+++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            00  000013468999999997777 67889999999887655321111            1235778999999999888


Q ss_pred             EECCCcEEEEEcCCCcE
Q 001490          972 SFVDGTLSIHEASNLEV  988 (1068)
Q Consensus       972 ~~~dg~v~vwd~~~~~~  988 (1068)
                      -+.+++|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            88899999999999875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.04  E-value=1.4e-08  Score=98.66  Aligned_cols=251  Identities=16%  Similarity=0.121  Sum_probs=161.0

Q ss_pred             CceEEEEc---CCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCC---cceEEEEECCCCC
Q 001490          312 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG---VSVNRVVWSPDGS  385 (1068)
Q Consensus       312 ~V~~v~~s---pdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~~~~spdg~  385 (1068)
                      .+..+.|.   -+|...++-+..+|.|.++.....+.....              +.  +..-.   ....++.|++.|.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L--------------~~--ls~~ki~~~~~lslD~~~~~~  134 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL--------------RG--LSSKKISVVEALSLDISTSGT  134 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee--------------cc--cchhhhhheeeeEEEeeccCc
Confidence            56666665   244435566667788888876543322210              00  11111   1245788999999


Q ss_pred             EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC-CCceeeE-eccCCCc
Q 001490          386 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP  463 (1068)
Q Consensus       386 ~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~  463 (1068)
                      .++++..+|.+.+-+..... +.....+++|.-+.+-+.|+..... ++.+||+|+.+..||++ .++.+.. .+.|...
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            99999999988855544332 2333367899999999999877665 89999999999999998 4445543 5678899


Q ss_pred             EEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCC--CEEEEEeeCCCCceeEEEEeCCCC
Q 001490          464 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEG  541 (1068)
Q Consensus       464 v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~  541 (1068)
                      |.+|.-++. .+.++++|+.|..|++||.++......-....+.|..+..+|.-  +.|++|-.+|     ..+-+...+
T Consensus       213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~  286 (339)
T KOG0280|consen  213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK  286 (339)
T ss_pred             eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence            999876653 66799999999999999999777666555566889999999843  3455544322     344444332


Q ss_pred             --eeeeEEeccccccCCeEEEEEecCCCEEEEEE-CCCeEE-EEEcCCC
Q 001490          542 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV  586 (1068)
Q Consensus       542 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~  586 (1068)
                        +....+..+..+..-...-.|......+++++ .|+.++ +|-.-++
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence              21112222222224455555544345566654 566644 6654443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.99  E-value=0.00019  Score=82.31  Aligned_cols=581  Identities=10%  Similarity=0.056  Sum_probs=284.5

Q ss_pred             cCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC----
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----  383 (1068)
Q Consensus       308 ~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd----  383 (1068)
                      |...-..|+.+-++|  +|.+||.-|.=.+-.+.+........          ...+.  + ..-++|..+..-.+    
T Consensus       304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~  368 (1096)
T KOG1897|consen  304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG  368 (1096)
T ss_pred             CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence            444445667777787  56888887765666655433221100          00000  1 12246666665432    


Q ss_pred             CCEEEEEe---CCcEEEEEEccCCCcccceEEEccccccEEEEE--EcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001490          384 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       384 g~~las~~---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      +..+++|+   .||++++..-.-+-.......+.| -..++.+.  +.+.-...++++-.  +.-++..+...-......
T Consensus       369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~--~eTrvl~i~~e~ee~~~~  445 (1096)
T KOG1897|consen  369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI--SETRVLNISEEVEETEDP  445 (1096)
T ss_pred             CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec--cceEEEEEccceEEeccc
Confidence            34566664   478899876554432222234555 34466666  44433321333322  223444432221111222


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                      +.......+..+.- ++..|+-.. ...||+++-.  .....+.... .++....+.+...++.++.    .+.+...++
T Consensus       446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i  516 (1096)
T KOG1897|consen  446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI  516 (1096)
T ss_pred             cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence            22222333332221 222222222 2345555433  2222333333 3333334444445555443    334555566


Q ss_pred             CCCeeeeEEeccccccCCeEEEEEecCC------CEEEEEECCCeEEEE-EcCCCeEEEEEeC--CCCCCCCceEEEecC
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDA--GGGLPENPRICFNKN  609 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~--~~~~~~v~~v~~s~~  609 (1068)
                      ..+......+  ..-...|.|+.++|-+      ++++.|..+..+.+. -..+...+.....  ..-...|....+-.|
T Consensus       517 ~~~~l~e~~~--~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d  594 (1096)
T KOG1897|consen  517 EDGGLREVSH--KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD  594 (1096)
T ss_pred             eccceeeeee--heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence            5554322222  1124779999998752      256677766555443 3334443333322  211122344455557


Q ss_pred             CCEEEEEECCCeEEEEECC--CCceeeecc--ccccceeeeEE----------cCCccccccccccCeeeecCCC-----
Q 001490          610 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSV----------NPISTVTGAGIANGSVSVNEDP-----  670 (1068)
Q Consensus       610 ~~~l~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-----  670 (1068)
                      ..+|.++..||.+.-+-+.  ++..-..-+  -...++.--.|          ..+...+ +-..++...+.+-.     
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v-iY~~n~kLv~spls~kev~  673 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV-IYSSNGKLVYSPLSLKEVN  673 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE-EEecCCcEEEeccchHHhh
Confidence            8899999999998876554  332111110  00111111111          1111111 11111222221100     


Q ss_pred             ------CCCc-ccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCc
Q 001490          671 ------KEDV-KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  743 (1068)
Q Consensus       671 ------~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~  743 (1068)
                            ++.. ..++++ ..+.+++..++.-.....+.+  |.   ....+.+++.+....+.+.+.......=      
T Consensus       674 ~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--pl---~~~prrI~~q~~sl~~~v~s~r~e~~~~------  741 (1096)
T KOG1897|consen  674 HMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--PL---GESPRRICYQESSLTFGVLSNRIESSAE------  741 (1096)
T ss_pred             hhcccccccCCceEEEe-cCCceEEEEecchhhcceeee--cC---CCChhheEecccceEEEEEecccccchh------
Confidence                  1111 122222 234555555543322222222  21   2344556666644444443332211100      


Q ss_pred             cCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEccCcee
Q 001490          744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT  811 (1068)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~~-----------dg~i~iwd~~~~~~  811 (1068)
                        ..+.......++++|..+-..+...++...+....+.+..|..| +.++++|.           .|.|.+|....++.
T Consensus       742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence              01111222345666666655454444433223334445558877 78888874           26789998887444


Q ss_pred             EEEecCC--CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001490          812 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  889 (1068)
Q Consensus       812 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iw  889 (1068)
                      ++....+  .+.+.++..-  +|++||.  -...|++|+..+++.++.-..|..++..+...-.|..++.|.--+.+.+-
T Consensus       820 L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  820 LELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            4443322  2344444332  6777763  45689999999987777777788999999999999999999888887776


Q ss_pred             ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECC
Q 001490          890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  941 (1068)
Q Consensus       890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~  941 (1068)
                      ..+..+.......+..  +   +.+.+++.+-.+..++.+-.++.+++...+
T Consensus       896 ~y~~~eg~f~evArD~--~---p~Wmtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  896 QYKGDEGNFEEVARDY--N---PNWMTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             EEeccCCceEEeehhh--C---ccceeeEEEecCceEEeecccccEEEEEec
Confidence            6665441111111111  1   147889999999999888777777776554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.98  E-value=1.6e-07  Score=92.29  Aligned_cols=206  Identities=18%  Similarity=0.154  Sum_probs=140.1

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEccCc--eeEE---EecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee
Q 001490          783 CFALSKNDAYLFSASGGVISLYIVMTF--KTIL---TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  857 (1068)
Q Consensus       783 ~l~~s~dg~~l~~~~dg~i~iwd~~~~--~~~~---~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  857 (1068)
                      .++.++||+.||+.-|..|.|-..++.  ..+.   ..+.....=+.++||| |+.+||.+...|+|++||+...++ ..
T Consensus         2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~   79 (282)
T PF15492_consen    2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FV   79 (282)
T ss_pred             ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EE
Confidence            367889999999999999888876542  1222   2233344568999999 999999999999999999985433 23


Q ss_pred             ecc-------cccCeEEEEEcCCC------CEEEEEeCCCcEEEEECCCCc---eeeeeeeecCCCcccCCCCceEEEEe
Q 001490          858 LEG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFH  921 (1068)
Q Consensus       858 ~~~-------h~~~V~~l~~spdg------~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s  921 (1068)
                      +..       -...|..|.|.+-.      ..|+....+|.++=+-+..+.   ......+.....+.   ..|.++.+.
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~  156 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYH  156 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEc
Confidence            322       23567777776432      245566778888777764321   11112222222222   479999999


Q ss_pred             eCCCEEEEEe-----C-------CeEEEEECCCceeeee--------------------ec--------cCCCcCEEEEE
Q 001490          922 KDQTRFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQAT  961 (1068)
Q Consensus       922 pdg~~la~~~-----d-------~~i~vwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~  961 (1068)
                      |..++|++++     +       -.+..|.+-++..-..                    +.        ......|..|.
T Consensus       157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS  236 (282)
T PF15492_consen  157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS  236 (282)
T ss_pred             CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence            9999988741     1       1366676543221100                    00        11267889999


Q ss_pred             EecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          962 FSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       962 fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      .||||+.||+...+|.|.+|++.+..+...+.
T Consensus       237 lSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  237 LSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            99999999999999999999999999998877

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=4e-08  Score=108.39  Aligned_cols=506  Identities=12%  Similarity=0.121  Sum_probs=261.8

Q ss_pred             CceEEEEcCCCCeEEEEEcC----cCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      .-+...|+|... ++|+++.    .|+|.||- ++|++-+..++                 +   -.+++++|+|..-.|
T Consensus        17 vsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-----------------P---~hatSLCWHpe~~vL   74 (1416)
T KOG3617|consen   17 VSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTY-----------------P---VHATSLCWHPEEFVL   74 (1416)
T ss_pred             cccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccccc-----------------c---eehhhhccChHHHHH
Confidence            344568999987 7787764    47888885 56665443221                 1   135569999999999


Q ss_pred             EEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeE--eccC--CCc
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAP  463 (1068)
Q Consensus       388 as~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h--~~~  463 (1068)
                      |.|-.-|.+.+|...+.+.-.   ....|..+|.-+.||++|.  .++++..-|.+.+|....-..++.  +..|  ...
T Consensus        75 a~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~  149 (1416)
T KOG3617|consen   75 AQGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQ  149 (1416)
T ss_pred             hhccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhce
Confidence            999999999999988754322   3457999999999999999  899999999999998663222221  1122  233


Q ss_pred             EEEEeeeecCCcc------EEEEEEcCCcEE-EEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEE
Q 001490          464 VYSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  536 (1068)
Q Consensus       464 v~~i~~~~~~~~~------~l~s~s~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w  536 (1068)
                      ++-++|.-..++.      ..+..+++..+- .++++.........        -.-.|+|..++.++.    +|+|+-.
T Consensus       150 ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyv  217 (1416)
T KOG3617|consen  150 LTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYV  217 (1416)
T ss_pred             eeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEE
Confidence            4445554333321      122333333322 33332111111100        012367777777765    4557666


Q ss_pred             eCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEc-CC----------------------------Ce
Q 001490          537 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NK----------------------------VQ  587 (1068)
Q Consensus       537 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~----------------------------~~  587 (1068)
                      |- .|+.........    . ..+-|.+...-+++.-++-.+.++-. .+                            |-
T Consensus       218 dq-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv  291 (1416)
T KOG3617|consen  218 DQ-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV  291 (1416)
T ss_pred             cC-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence            63 344333332211    1 11122222222222222222221111 01                            10


Q ss_pred             E--EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce----------eeeccccccceeeeEEcCCcccc
Q 001490          588 L--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVT  655 (1068)
Q Consensus       588 ~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~  655 (1068)
                      +  -..+.. .....+.+++++..+..+..|...|.+.+|.-.....          +...+...+.|..+.|.|..+.+
T Consensus       292 Lr~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~  370 (1416)
T KOG3617|consen  292 LRKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTA  370 (1416)
T ss_pred             ccCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchh
Confidence            0  000111 1124588999999999999999999999997543311          11222333455556665544443


Q ss_pred             ccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEE
Q 001490          656 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL  735 (1068)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~  735 (1068)
                      ++.+....+.+....     .+                             ..|.....++.-+.++-.|..+.      
T Consensus       371 avn~~~~v~ll~E~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------  410 (1416)
T KOG3617|consen  371 AVNTEEDVVLLGENS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------  410 (1416)
T ss_pred             hhhhhhheeeeccCc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec------
Confidence            333222222210000     00                             00111111111111111111110      


Q ss_pred             EEeccCCccCCCccceeccCCcccCCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeE--
Q 001490          736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--  812 (1068)
Q Consensus       736 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~--  812 (1068)
                                                 +|.. ...       ..-++..++.+  ...|++..+.+|..|++.+....  
T Consensus       411 ---------------------------sGv~~~l~-------~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~  454 (1416)
T KOG3617|consen  411 ---------------------------SGVSQDLK-------LSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLAT  454 (1416)
T ss_pred             ---------------------------cchhhhhh-------hccchhhheec--cceEEEEcCceEEEEEecccchhHH
Confidence                                       0100 000       11223344443  34566666788889998632211  


Q ss_pred             EEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee--ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          813 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       813 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      ..........+.+++.  +.++...++.+  |.++.+. |.....  +..-.+.|.-+.++  |.+++.....+.++-+|
T Consensus       455 ~~~~tF~cet~~la~~--nqN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~d  527 (1416)
T KOG3617|consen  455 IQCTTFSCETTSLAIV--NQNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLD  527 (1416)
T ss_pred             HhhhhhccccchHhHh--hcceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhh
Confidence            1111222344455555  34455555554  5555444 332222  23334555555554  78999988888888899


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE---EeC----CeEEEEECCCceee
Q 001490          891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL  946 (1068)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~---~~d----~~i~vwd~~~~~~~  946 (1068)
                      +...+...........+.....+.+..+..+..|.-+.+   ..+    .++.+||.++++..
T Consensus       528 vsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~  590 (1416)
T KOG3617|consen  528 VSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ  590 (1416)
T ss_pred             hhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence            887665544344444444444466778888877766554   233    46999999887654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=4.4e-09  Score=110.02  Aligned_cols=294  Identities=10%  Similarity=0.126  Sum_probs=185.3

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCC-CcceeeeeeeeeeccccccceeeeeecCCCcceEEEEE
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~  380 (1068)
                      .+..+.||+..|..++--.+.+. +++++.|++|++|.++. |..+.+        ..|..     .+..|+.+|..+.|
T Consensus       727 rL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQf-----TY~aHkk~i~~igf  792 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQF-----TYQAHKKPIHDIGF  792 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceeee-----EhhhccCcccceee
Confidence            34567899999999876555553 58999999999999964 332221        11211     26679999999999


Q ss_pred             CCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCC-CCcEEEEEEeCCCcEEEEECCCCceeeEec-
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE-  458 (1068)
Q Consensus       381 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  458 (1068)
                      -.|-++++++  ||.|.+||.--|..+.+...-..| +.+..+..-++ .+.++++.++...+|+++|.+.++-...++ 
T Consensus       793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             eeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence            9999999877  778999999877765533222222 22333333333 344355555889999999999887665553 


Q ss_pred             ----cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEE
Q 001490          459 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  534 (1068)
Q Consensus       459 ----~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~  534 (1068)
                          +..+.++++++.+  .|..++.+-..|.|.+.|.+++...-.+.........++- |..+.++....    +..+.
T Consensus       870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sal----dHsla  942 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSAL----DHSLA  942 (1034)
T ss_pred             ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcc----cceeE
Confidence                3456678888866  5669999999999999999988876655544333322322 44455554432    44466


Q ss_pred             E-EeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC----CeEEEEEeCCCCCCCCceEEEecC
Q 001490          535 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKN  609 (1068)
Q Consensus       535 ~-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~  609 (1068)
                      + |....|....+.+...   .+..-  .-.-|..++++...+.+.+|--..    ...+..+....-....++++.-|-
T Consensus       943 VnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen  943 VNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred             eeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence            6 8777776554444333   11111  112245667766666677773211    122223332222233567777776


Q ss_pred             CCEEEEEECCCeEEE
Q 001490          610 GTLLAVIANENRIKI  624 (1068)
Q Consensus       610 ~~~l~~~~~dg~i~i  624 (1068)
                      +.-+..|...|.|.+
T Consensus      1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cchhhccCCCCceee
Confidence            666777777787765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.95  E-value=3.2e-09  Score=126.14  Aligned_cols=201  Identities=15%  Similarity=0.249  Sum_probs=160.3

Q ss_pred             cCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490          369 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  448 (1068)
Q Consensus       369 ~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~  448 (1068)
                      ..|-..|.++.=+|...+.++|+.||.|++|....+..+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence            345678899999999999999999999999999998877655443 33 8899999999999  6777888999999996


Q ss_pred             CCCceeeEeccCCCcEEEEeeeecCCccEEEEEE---cCCcEEEEeCCCCCc-eEEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          449 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       449 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      . .+.....+.|......+.|..    ..+++++   .++.+.+||..-... -.....|.+.++++++.|..+.+++|+
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence            5 666677788998888887754    3566653   567899998643322 233378889999999999999999998


Q ss_pred             eCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490          525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                      .    +|.|++||++..++++.++.            +. ...++++|+..|.++||++.....+..++..
T Consensus      2356 r----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             C----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            7    55699999988777655543            33 4578999999999999999988888777643

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.94  E-value=1.5e-07  Score=91.81  Aligned_cols=198  Identities=15%  Similarity=0.109  Sum_probs=134.1

Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEccCcee--EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcC-Cceeee
Q 001490          781 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS  856 (1068)
Q Consensus       781 v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~  856 (1068)
                      ..++.|++.+..++++. +|.+.+-+......  ++..+.|.-++....|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45678888888888775 68888555544433  347888999999999998788899999999999999998 344444


Q ss_pred             e-ecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC--CEEEEEeC
Q 001490          857 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHE  932 (1068)
Q Consensus       857 ~-~~~h~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~d  932 (1068)
                      . .+.|...|.++.-+| ++.+++||+.|..|++||..+-..    ++.  .  ....+.|..+..+|.-  ++|+++.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl~--~--~~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PLF--K--AKVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----ccc--c--CccccceEEEEecchhhhHHHHHHHh
Confidence            4 456888999998886 578999999999999999986321    111  1  1122579999999864  34555555


Q ss_pred             CeEEEEECCCceee----eeeccCCCcCEEEEEEecCCCEEEEEE-CCCcEE-EEEcCCC
Q 001490          933 THLAIYEAEELTCL----KQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL  986 (1068)
Q Consensus       933 ~~i~vwd~~~~~~~----~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~-vwd~~~~  986 (1068)
                      +..+|.+...+..-    ......|.+-...-.|......|+|++ .|+.++ +|-..++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            55666666544321    122334444444444433335677764 466644 6655444

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.93  E-value=1.8e-06  Score=97.20  Aligned_cols=213  Identities=10%  Similarity=0.059  Sum_probs=125.4

Q ss_pred             eCCeEEEEEccCceeEEEecCCCCCe-----EEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc-------C
Q 001490          797 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------R  864 (1068)
Q Consensus       797 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~-------~  864 (1068)
                      .++.+..+|.++|+.+..........     .+.+..  ++ .++.++.+|.+..+|..+|+.+........       .
T Consensus       168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~  244 (394)
T PRK11138        168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR  244 (394)
T ss_pred             CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence            36778888888888777665321111     112222  23 466678899999999999987655431100       0


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCC
Q 001490          865 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE  942 (1068)
Q Consensus       865 V~~l~~sp--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~  942 (1068)
                      ...+.-+|  .+..+..++.+|.+..+|..+++..-...+    +.      ...+.. .++..++.+.++.+..+|..+
T Consensus       245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~------~~~~~~-~~~~vy~~~~~g~l~ald~~t  313 (394)
T PRK11138        245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GS------VNDFAV-DGGRIYLVDQNDRVYALDTRG  313 (394)
T ss_pred             ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC------ccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence            11111122  245666777899999999998874322111    11      111111 244444557889999999999


Q ss_pred             ceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEE
Q 001490          943 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1022 (1068)
Q Consensus       943 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 1022 (1068)
                      |+.+-...........+...  .+.+|+.++.||.+.+.|..+|+.+.+.....        ..+...-+ +.   ++.|
T Consensus       314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~---~~~l  379 (394)
T PRK11138        314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA---DDKL  379 (394)
T ss_pred             CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE---CCEE
Confidence            97654311111111222222  24567788999999999999999998876211        11111101 11   3689


Q ss_pred             EEEeCCCcEEEEeCC
Q 001490         1023 AVGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1023 ~~~~~dg~i~~w~~~ 1037 (1068)
                      ++++.||.|+.++.+
T Consensus       380 ~v~t~~G~l~~~~~~  394 (394)
T PRK11138        380 LIQARDGTVYAITRP  394 (394)
T ss_pred             EEEeCCceEEEEeCC
Confidence            999999999998763

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=6e-07  Score=100.18  Aligned_cols=218  Identities=10%  Similarity=0.014  Sum_probs=134.9

Q ss_pred             eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCC-EEEEEECC---CeEEEEEcCCceeeeeecccccCeEEEEEcCCCC
Q 001490          800 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  875 (1068)
Q Consensus       800 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  875 (1068)
                      .|.+-|..... .+.+... +.+....||| ||+ .++..+.+   ..|+++|+.+++...... ..+......|||||+
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            35555554333 3333333 3778899999 776 46654443   479999999887544333 455566788999998


Q ss_pred             EEEEE-eCC--CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCC----eEEEEECCCceeeee
Q 001490          876 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ  948 (1068)
Q Consensus       876 ~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~----~i~vwd~~~~~~~~~  948 (1068)
                      .|+.. +.+  ..|.++|+.+++..   .+....+      ......|||||+.|+...+.    .|+++|+.+++..+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            77654 333  46888888876522   2222222      12345799999999875443    699999988877554


Q ss_pred             eccCCCcCEEEEEEecCCCEEEEEECC---------CcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCC
Q 001490          949 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1019 (1068)
Q Consensus       949 ~~~~h~~~v~~l~fs~dg~~l~t~~~d---------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 1019 (1068)
                      ...+.    ....|||||++|+..+..         ..|.+.|+.+++.. .+...     .   .   -...+|+| ||
T Consensus       317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG  379 (419)
T PRK04043        317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG  379 (419)
T ss_pred             ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence            33222    124899999999877654         26888899888753 23211     0   0   11367999 67


Q ss_pred             CEEEEEeCC-CcEEEEeCCCCCCCCccCC
Q 001490         1020 TQFAVGLTN-GEVYVIEPNEPGDTWAVLP 1047 (1068)
Q Consensus      1020 ~~l~~~~~d-g~i~~w~~~~~~~~~~~~~ 1047 (1068)
                      +.++....+ +.-.+|-++-.+..-..+|
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g~~~~~l~  408 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNYNKSFLFP  408 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence            777666554 4444555554553333343

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=5.3e-09  Score=109.47  Aligned_cols=289  Identities=13%  Similarity=0.096  Sum_probs=182.7

Q ss_pred             EEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC-------CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcC
Q 001490          412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD  484 (1068)
Q Consensus       412 ~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d  484 (1068)
                      .+.||...|..++-..+.+  -+++++.|++|++|.++       +..+..+++.|..+|.++.|..  +-++  .++-|
T Consensus       730 nf~GH~~~iRai~AidNEN--SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~--~lr~--i~ScD  803 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNEN--SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA--DLRS--IASCD  803 (1034)
T ss_pred             cccCcHHHhHHHHhccccc--ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee--ccce--eeecc
Confidence            5779999999887666655  69999999999999876       3346778899999999998865  3233  45668


Q ss_pred             CcEEEEeCCCCCceEEec--CCCCcEEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecc--ccccCCeE
Q 001490          485 GKIKAWLYDSLGARVDYD--APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL--QLQHNSVS  558 (1068)
Q Consensus       485 g~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~--~~~~~~v~  558 (1068)
                      |-|++||.-.++......  ...+.+..+..-+  +...++++..   .+.+|+++|.+.++....++.-  ...+..++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcs---aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCS---AESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeecc---chhhheeeecccccceeeEEeccCCCCchhee
Confidence            999999976655543221  1222223333323  3334443322   2667999999988776665533  22346789


Q ss_pred             EEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEE-EECCCCceeeecc
Q 001490          559 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI-LETPESNSVDAAG  637 (1068)
Q Consensus       559 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~  637 (1068)
                      +++..+.|++++++-.+|.|.+.|.++|+.+.....-.-  ....++ .|..+.++....|.++.+ |..-++......+
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            999999999999999999999999999998876642211  112222 244556777777888888 8777665444443


Q ss_pred             ccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEE
Q 001490          638 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  717 (1068)
Q Consensus       638 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~  717 (1068)
                      ...++..-+                        ..-|..++++.....+.+|.-............+....-.+..++++
T Consensus       958 pppepahfl------------------------qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala 1013 (1034)
T KOG4190|consen  958 PPPEPAHFL------------------------QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALA 1013 (1034)
T ss_pred             CCCcchhhh------------------------hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceee
Confidence            222211000                        11234455555555566664221111111111222223445677888


Q ss_pred             EecCCceEEEeecCccEEE
Q 001490          718 YNNGGQAIFALASNGVHLM  736 (1068)
Q Consensus       718 ~s~~g~~l~~~~~dg~i~i  736 (1068)
                      .-|-...+++|...|.|.+
T Consensus      1014 ~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1014 PLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eccccchhhccCCCCceee
Confidence            8887777888888887765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.90  E-value=6.9e-09  Score=123.44  Aligned_cols=226  Identities=13%  Similarity=0.174  Sum_probs=169.1

Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEecc-CCC
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA  462 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~  462 (1068)
                      ++.++....++...-|..+.+..     .+..+-..|.++.=+|...  +.+||+.||.+++|....++.+..++. -..
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred             cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence            34444444555555565554432     2334566788888888888  899999999999999999988877642 337


Q ss_pred             cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCe
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~  542 (1068)
                      .|+.+.|+.  .|..+..+..||.+.+|... .+.......|......+.|-.  ..+++.+.+.+ ++.+.+||..-..
T Consensus      2253 ~vtr~~f~~--qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFNH--QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred             hhhhhhhcc--cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence            788888865  66688899999999999876 555667777877777777765  66777776555 6789999965321


Q ss_pred             e-eeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001490          543 I-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  621 (1068)
Q Consensus       543 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  621 (1068)
                      . -..-..|.   +.++++++.|..+.+++|+.+|.|++||++..++++.++.           +. ...++++++..|.
T Consensus      2327 ~~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred             ccceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence            1 11114555   8899999999999999999999999999998888776653           23 4568999999999


Q ss_pred             EEEEECCCCceeeecc
Q 001490          622 IKILETPESNSVDAAG  637 (1068)
Q Consensus       622 i~iwd~~~~~~~~~~~  637 (1068)
                      ++||++..-..+..+.
T Consensus      2392 ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eEEEEccccchhhcCc
Confidence            9999999876666554

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.89  E-value=0.00042  Score=79.66  Aligned_cols=580  Identities=11%  Similarity=0.102  Sum_probs=291.8

Q ss_pred             EECCCCCEEEEEeCCcEEEEEEcc-CCCcccc---eEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490          379 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  454 (1068)
Q Consensus       379 ~~spdg~~las~~~d~~i~vwd~~-~~~~~~~---~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  454 (1068)
                      ....+|...+.|..+|.+...-+. +++....   ....-+...-..|+..-++|   +++.|+.-|.=++-.+.+-.-.
T Consensus       264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence            455678888888888877766555 4443322   11233445556777778777   5888887776666655433221


Q ss_pred             -------eEeccCCCcEEEEeeeecC--CccEEEEEE---cCCcEEEEeCCCCCceE---EecCCCCcEEEE--------
Q 001490          455 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRM--------  511 (1068)
Q Consensus       455 -------~~~~~h~~~v~~i~~~~~~--~~~~l~s~s---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~--------  511 (1068)
                             .++. .-+||..+++....  .+..+++++   .||++|+..-.-+-...   .+.+ -..+..+        
T Consensus       341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~  418 (1096)
T KOG1897|consen  341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY  418 (1096)
T ss_pred             Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence                   2332 44688888765433  334555554   57888876422111100   1111 0111111        


Q ss_pred             ---------------------------EEccCCCEEEEEeeCCCC-----ceeEEEEeCCCCeeeeEEeccccccCCeEE
Q 001490          512 ---------------------------AYSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV  559 (1068)
Q Consensus       512 ---------------------------~~s~d~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~  559 (1068)
                                                 .|+.+.+.+++....++.     ...|++++-.  .....+...    ..++.
T Consensus       419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti  492 (1096)
T KOG1897|consen  419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI  492 (1096)
T ss_pred             CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence                                       122223333332221110     1113333322  111112211    23333


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecC--C----CEEEEEECCCeEEEEEC-CCCce
Q 001490          560 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILET-PESNS  632 (1068)
Q Consensus       560 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~-~~~~~  632 (1068)
                      ...+.+...++.++.++.+...++..+.+ .....+.-...|.|+.++|-  +    +++++|..+..+.+.-. ++...
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~  571 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGGL-REVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL  571 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccce-eeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence            44444555777777777777777776663 22222222345888989873  2    37888877665554433 22222


Q ss_pred             eeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCC--cccceeecCCcccc
Q 001490          633 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKA  710 (1068)
Q Consensus       633 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~  710 (1068)
                      +.........+      |.           ++.+... ..|..+|.++..||.+.-+-++....  ......    .-..
T Consensus       572 ~~~~~l~~~~i------PR-----------SIl~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~----~lGt  629 (1096)
T KOG1897|consen  572 ITHEQLSGEII------PR-----------SILLTTF-EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKV----TLGT  629 (1096)
T ss_pred             eeeeccCCCcc------ch-----------heeeEEe-eccceEEEEEcCCceEEEEEEEcccceEcccccc----ccCC
Confidence            21111100000      00           1111000 23477888888888877665543221  111100    0123


Q ss_pred             ccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeE-EEEec-
Q 001490          711 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSK-  788 (1068)
Q Consensus       711 ~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~-  788 (1068)
                      .++.--.|+..++.-+.+.+|.-..+|..+.                      ..++....++      .+.. ..|+. 
T Consensus       630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~----------------------kLv~spls~k------ev~~~c~f~s~  681 (1096)
T KOG1897|consen  630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNG----------------------KLVYSPLSLK------EVNHMCPFNSD  681 (1096)
T ss_pred             CCcEEEEEeeCCceEEEEeCCCCEEEEecCC----------------------cEEEeccchH------Hhhhhcccccc
Confidence            3444445555554444444443333332111                      0001111111      1111 11222 


Q ss_pred             -CCCEEEEEeCCeEEEEEccCcee--EEEecCCCCCeEEEEEeCCCCCEEEEEECC--------------CeEEEEEcCC
Q 001490          789 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS  851 (1068)
Q Consensus       789 -dg~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~  851 (1068)
                       -...++++..+.+++.-+..-+.  ++++. -......+++.+ ....+++.+.-              ..++++|-.|
T Consensus       682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT  759 (1096)
T KOG1897|consen  682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT  759 (1096)
T ss_pred             cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence             23457777777777776654332  23322 223445556654 33444433221              1466777666


Q ss_pred             ceeeeeecc-cc---cCeEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceeeeeeeecCCCcccCCCCce
Q 001490          852 SEVISKLEG-HS---KRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  916 (1068)
Q Consensus       852 ~~~~~~~~~-h~---~~V~~l~~spd-g~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  916 (1068)
                      -+.+...+- ..   -.|.++.|..| +.++++|..          .|.|.++.+......+  .+..   +.. .+.+.
T Consensus       760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~--~v~e---~~v-~Gav~  833 (1096)
T KOG1897|consen  760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE--LVAE---TVV-KGAVY  833 (1096)
T ss_pred             eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee--eeee---eee-cccee
Confidence            554433221 11   23455568888 778887752          4667777776622111  1111   100 01222


Q ss_pred             EEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCc--EEEEecc
Q 001490          917 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRILS  994 (1068)
Q Consensus       917 ~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~--~~~~~~~  994 (1068)
                      ++. --+|+ ++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|..=+++.+-.....+  ..-..+ 
T Consensus       834 aL~-~fngk-llA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-  909 (1096)
T KOG1897|consen  834 ALV-EFNGK-LLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-  909 (1096)
T ss_pred             ehh-hhCCe-EEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-
Confidence            221 12344 4555667899999998876664 55678899999999999999999887877766555443  432222 


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 001490          995 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1042 (1068)
Q Consensus       995 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~ 1042 (1068)
                              ...+-|..++.+-  +.+.++.+..+|.+++-..+.....
T Consensus       910 --------D~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~t  947 (1096)
T KOG1897|consen  910 --------DYNPNWMTAVEIL--DDDTYLGAENSGNLFTVRKDSDATT  947 (1096)
T ss_pred             --------hhCccceeeEEEe--cCceEEeecccccEEEEEecCCCCc
Confidence                    1223455666666  4688999999999999888754433

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.85  E-value=3.7e-06  Score=85.83  Aligned_cols=233  Identities=16%  Similarity=0.157  Sum_probs=154.4

Q ss_pred             eEEEEcCCCCeEEEEEcCcCc-EEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE--
Q 001490          314 MSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--  390 (1068)
Q Consensus       314 ~~v~~spdg~~lla~gs~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~--  390 (1068)
                      -.++.+|+....++.+-.-|+ ..+||..+|+.+....-           -....+.||      -.||+||++|.+.  
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTEn   70 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTEN   70 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEecc
Confidence            357899966668888877665 88999999988764110           111124444      5799999999987  


Q ss_pred             ---eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe----------------CCCcEEEEECCCC
Q 001490          391 ---YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVTG  451 (1068)
Q Consensus       391 ---~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~----------------~d~~i~iwd~~~~  451 (1068)
                         ...|.|-|||...+  ++...++..|.-.-..+.+.|||+.++++-|+                .+.++...|..+|
T Consensus        71 d~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   71 DYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             ccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence               34578999999832  44555777777777789999999854444443                1335667788899


Q ss_pred             ceeeE--e--ccCCCcEEEEeeeecCCccEEEEEEcCCc-------EEEEeCCCCCceEEec-------CCCCcEEEEEE
Q 001490          452 SRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMAY  513 (1068)
Q Consensus       452 ~~~~~--~--~~h~~~v~~i~~~~~~~~~~l~s~s~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~~  513 (1068)
                      +.+..  +  .-|...|..+++..  +|..++..-..|.       |-+++..  +....+.       .-.+-+-+|++
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~  224 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAA  224 (305)
T ss_pred             ceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEE
Confidence            88766  4  33778899998865  5545544433332       3333322  2222222       22346889999


Q ss_pred             ccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEE
Q 001490          514 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  579 (1068)
Q Consensus       514 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~  579 (1068)
                      ++++.++++.+.   ..+.+.+||..+++.+....-.     .+..++-.+++ ++ ..+..|.+.
T Consensus       225 ~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~-~ssG~G~~~  280 (305)
T PF07433_consen  225 DRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FL-VSSGQGQLI  280 (305)
T ss_pred             eCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eE-EeCCCccEE
Confidence            999999887764   2557999999999988776653     46777776666 44 444445533

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.82  E-value=3.9e-06  Score=85.67  Aligned_cols=207  Identities=14%  Similarity=0.089  Sum_probs=142.4

Q ss_pred             eEEEEec-CCCEEEEEe-CC-eEEEEEccCceeEEEecCCCCCe--EEEEEeCCCCCEEEEEEC-----CCeEEEEEcC-
Q 001490          782 PCFALSK-NDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR-  850 (1068)
Q Consensus       782 ~~l~~s~-dg~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~-  850 (1068)
                      ..++.+| ++..++.+. -| ...+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||.. 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence            4678888 556666666 34 58999999999998877655432  3578999 8999887543     4799999999 


Q ss_pred             CceeeeeecccccCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeeeeeeecCCCcccCC
Q 001490          851 SSEVISKLEGHSKRVTGLVFSDALNILVSSG------------------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  912 (1068)
Q Consensus       851 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  912 (1068)
                      +.+.+..+..|.-.--.+.+.|||+.|+.+-                  .+..+..-|..+++......+......    
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~----  162 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ----  162 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc----
Confidence            6678888887776677789999998888752                  123455666677664443333222122    


Q ss_pred             CCceEEEEeeCCCEEEEEe-C---C----eEEEEECCCceeeeeec----cCCCcCEEEEEEecCCCEEEE-EECCCcEE
Q 001490          913 PSETHIQFHKDQTRFLLVH-E---T----HLAIYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFT-SFVDGTLS  979 (1068)
Q Consensus       913 ~~v~~~~~spdg~~la~~~-d---~----~i~vwd~~~~~~~~~~~----~~h~~~v~~l~fs~dg~~l~t-~~~dg~v~  979 (1068)
                      ..+..+++.++|..++... .   +    -+.+++....-......    ..-...+-+|+++.+|.++++ +-.-+++.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            2699999999999877631 1   1    25555543321111100    112578999999999987754 44668899


Q ss_pred             EEEcCCCcEEEEec
Q 001490          980 IHEASNLEVQCRIL  993 (1068)
Q Consensus       980 vwd~~~~~~~~~~~  993 (1068)
                      +||..+++++....
T Consensus       243 ~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  243 VWDAATGRLLGSVP  256 (305)
T ss_pred             EEECCCCCEeeccc
Confidence            99999999996655

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=5.3e-08  Score=99.38  Aligned_cols=165  Identities=20%  Similarity=0.166  Sum_probs=115.0

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      .++.+..+|+++ ++|++..+....++++.....    ..+.++..           . -...-.++.|-.+......+.
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~-----------~-v~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS-----------C-VPKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe-----------e-cccCcceeeeeeccceEEEEe
Confidence            556677888886 788888888877777654432    11111110           0 112233444555555555543


Q ss_pred             ---CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEE
Q 001490          392 ---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  467 (1068)
Q Consensus       392 ---~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~i  467 (1068)
                         ....+.+|....+.+.    .+-||-..++.++|+||++  +++++..|..|++-.......+..+ -||...|..+
T Consensus       127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence               4445666666654432    3459999999999999999  8999999999999887766656554 5799999999


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEec
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  502 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  502 (1068)
                      +..+   +..|+++|.|++|++||+.+++....+.
T Consensus       201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence            9753   4579999999999999999988775443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.80  E-value=7.9e-06  Score=92.01  Aligned_cols=153  Identities=19%  Similarity=0.115  Sum_probs=93.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCC--cEE-----EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  505 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  505 (1068)
                      .++.++.++.+.-+|..+|+.+.+......  ...     .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            466777788999999999998876643220  000     0000011133467788899999999999999887766544


Q ss_pred             CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccc--CCeEEEEEecCCCEEEEEECCCeEEEEEc
Q 001490          506 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM  583 (1068)
Q Consensus       506 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  583 (1068)
                      ....+..+ .++ .++.+..    ++.++-+|..+|+.+-.+.......  ....+-..  .+..++.++.+|.+..+|.
T Consensus       151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            22211122 234 4444432    5679999999999887765432000  00011111  1346777888999999999


Q ss_pred             CCCeEEEEEe
Q 001490          584 NKVQLLTTID  593 (1068)
Q Consensus       584 ~~~~~~~~~~  593 (1068)
                      .+|+.+-...
T Consensus       223 ~~G~~~W~~~  232 (394)
T PRK11138        223 EQGQLIWQQR  232 (394)
T ss_pred             cCChhhheec
Confidence            9988765543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.79  E-value=3.8e-06  Score=82.77  Aligned_cols=212  Identities=15%  Similarity=0.104  Sum_probs=133.5

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEEcCCc--eeeeeecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001490          825 LAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  899 (1068)
Q Consensus       825 l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~  899 (1068)
                      ++.++ +|++||+- .|..|.|-..++.  ..+.+...   ..-.-+.++||||+.+||.+...|+|+++|+.+.+....
T Consensus         3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            56677 89888854 5777888766542  22233222   223457899999999999999999999999987553322


Q ss_pred             eeeecCCCcccCCCCceEEEEeeCC-------CEEEEEeCCeEEEEECCCc-----eee--eeeccCCCcCEEEEEEecC
Q 001490          900 RSLQTPDGVMTLAPSETHIQFHKDQ-------TRFLLVHETHLAIYEAEEL-----TCL--KQWFPISSVPISQATFSCD  965 (1068)
Q Consensus       900 ~~~~~~~~~~~~~~~v~~~~~spdg-------~~la~~~d~~i~vwd~~~~-----~~~--~~~~~~h~~~v~~l~fs~d  965 (1068)
                      ..-....+  .....|..+.|-+-.       .+|+...+|.++=|-+..+     +..  ..+...+...|.++.|.|.
T Consensus        81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            11111111  122467777776543       5566678887776665322     111  1222334789999999999


Q ss_pred             CCEEEEEECC-----------CcEEEEEcCCCcEEEEeccccccCCCC-------------------ccCcccceEEEEC
Q 001490          966 CRMVFTSFVD-----------GTLSIHEASNLEVQCRILSTAYLRPTT-------------------SCLHVYPHAIAAH 1015 (1068)
Q Consensus       966 g~~l~t~~~d-----------g~v~vwd~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 1015 (1068)
                      -++|++||..           .-+..|.+-++.+-.............                   ....-....++.+
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS  238 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS  238 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence            8888877732           236778887776654432111000000                   0001123457788


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001490         1016 PLKPTQFAVGLTNGEVYVIEPNEPGD 1041 (1068)
Q Consensus      1016 p~~~~~l~~~~~dg~i~~w~~~~~~~ 1041 (1068)
                      | |+..||+...+|.|.+|++|.-..
T Consensus       239 P-dg~~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  239 P-DGSLLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             C-CCCEEEEEEcCCeEEEEecCcchh
Confidence            9 799999999999999999986543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=6e-07  Score=99.38  Aligned_cols=300  Identities=15%  Similarity=0.131  Sum_probs=170.2

Q ss_pred             ceEEEEECCCCCEEEEEeC----CcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECC
Q 001490          374 SVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  449 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~~~----d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~  449 (1068)
                      .-+-.+|+|...++|+++.    .|.|.||- ++|+..+.. +..-   .+++++|+|..-  +|+.|-.-|.+.+|...
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecC
Confidence            3344679999999998863    47788874 445533211 2222   356799999876  78889889999999987


Q ss_pred             CCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecC--CC--C--cEEEEEEccCCCEEE--
Q 001490          450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--L--GCTRMAYSANGRRLF--  521 (1068)
Q Consensus       450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--~~--~--~i~~~~~s~d~~~l~--  521 (1068)
                      +.+.-.....|..+|..+.|++  +|..++++..-|.|.+|..+-.+.......  |.  .  ...+...++++.-++  
T Consensus        90 ~~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l  167 (1416)
T KOG3617|consen   90 TTETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL  167 (1416)
T ss_pred             CceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence            7776666677999999999976  778999999999999998875443332211  11  1  233444566643221  


Q ss_pred             ---EEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCC
Q 001490          522 ---SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  598 (1068)
Q Consensus       522 ---~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~  598 (1068)
                         +.+.+..+-....-|...+..  +...           -.-.|+|..++.++.+|+|+--|- .|+.....+..+. 
T Consensus       168 aKaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~-  232 (1416)
T KOG3617|consen  168 AKAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE-  232 (1416)
T ss_pred             hhhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch-
Confidence               111111110011112111100  0000           112467888899999999988774 5666665554432 


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCC-CCCcccc
Q 001490          599 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPE  677 (1068)
Q Consensus       599 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l  677 (1068)
                         ..+-|.+-..-+++...+-++.++-......       ...+..+..+                  +.. ...|. +
T Consensus       233 ---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~-------~ee~~~vk~s------------------gk~GgrqGg-i  283 (1416)
T KOG3617|consen  233 ---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGT-------SEERCAVKVS------------------GKLGGRQGG-I  283 (1416)
T ss_pred             ---HHHHHhcccceEEEEeeeceeeEEEecCCCc-------hHHhhhhhhc------------------cccCCccCc-c
Confidence               3455666555555555554554443332100       0000000010                  000 00111 2


Q ss_pred             eeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEec
Q 001490          678 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  739 (1068)
Q Consensus       678 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~  739 (1068)
                      +.+...|.++-        .....     ......+.+++++..+..+.++...|.+.+|.-
T Consensus       284 A~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~  332 (1416)
T KOG3617|consen  284 ACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD  332 (1416)
T ss_pred             ccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence            22222221110        00000     114557999999999999999999999999963

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.75  E-value=8.1e-08  Score=98.08  Aligned_cols=159  Identities=9%  Similarity=0.091  Sum_probs=114.4

Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEEcCCcee----eeeecccccCeEEEEEcCCCCEEEEE---eCCCcEEEEECCCCc
Q 001490          823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSS---GGDAQIFVWDVDGWG  895 (1068)
Q Consensus       823 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~---s~dg~i~iwd~~~~~  895 (1068)
                      ..+..++ ++++||++..+....++++.....    +.... -...-+++.|..+......+   +....+.+|....+ 
T Consensus        66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-  142 (390)
T KOG3914|consen   66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-  142 (390)
T ss_pred             cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence            3455666 889999998888877777764332    22222 12223444554444444443   44455566665542 


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEEC
Q 001490          896 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  974 (1068)
Q Consensus       896 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~  974 (1068)
                           +....-||..   .+..++||||+++|+++ .|..|+|-.+..-..+..+.-||..-|..++.-++ ..|+++|.
T Consensus       143 -----~~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG  213 (390)
T KOG3914|consen  143 -----RCEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG  213 (390)
T ss_pred             -----Ccchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence                 2333456665   79999999999999995 78899999998888888888899999999998765 46999999


Q ss_pred             CCcEEEEEcCCCcEEEEec
Q 001490          975 DGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       975 dg~v~vwd~~~~~~~~~~~  993 (1068)
                      |++|++||+.+|+.+..+.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999886665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.74  E-value=2.9e-05  Score=81.11  Aligned_cols=216  Identities=13%  Similarity=0.138  Sum_probs=136.3

Q ss_pred             EEEEec-CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEe-CCCCCEEEEEECCCeEEEEEcCCceeeeeec
Q 001490          783 CFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PHDNNVIAIGMDDSTILIYNARSSEVISKLE  859 (1068)
Q Consensus       783 ~l~~s~-dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~  859 (1068)
                      +++|.+ ++.++++-. .+.|..|+..+++... +....  ...+++. + ++.+++ +...+ +.++|..+++......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EETTC-EEEEETTTTEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEcCc-eEEEecCCCcEEEEee
Confidence            578888 455444443 6889999998876643 22122  7778888 5 665555 45444 5666999886443332


Q ss_pred             c-----cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE
Q 001490          860 G-----HSKRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  926 (1068)
Q Consensus       860 ~-----h~~~V~~l~~spdg~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  926 (1068)
                      .     .....+.+++.|+|++.++....        |.|..++.. ++...  ......       ....++|+||++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~--~~~~~~-------~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV--VADGLG-------FPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE--EEEEES-------SEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE--EecCcc-------cccceEECCcchh
Confidence            2     34567889999999988886654        446666666 33221  222221       3578999999998


Q ss_pred             EEE--EeCCeEEEEECCCcee----eeeeccCC--CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecccccc
Q 001490          927 FLL--VHETHLAIYEAEELTC----LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL  998 (1068)
Q Consensus       927 la~--~~d~~i~vwd~~~~~~----~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~  998 (1068)
                      |.+  +..+.|..|++.....    ...+....  .+....+++..+|.+.++....+.|.+++.+ |+++..+....  
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--  224 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--  224 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--
Confidence            876  3567788888863221    11121111  2348899999999988888888999999988 88887777221  


Q ss_pred             CCCCccCcccceEEEEC-CCCCCEEEEE
Q 001490          999 RPTTSCLHVYPHAIAAH-PLKPTQFAVG 1025 (1068)
Q Consensus       999 ~~~~~~~~~~~~~~~~~-p~~~~~l~~~ 1025 (1068)
                              -.+.+++|. |+...+++|.
T Consensus       225 --------~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 --------PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             --------SSEEEEEEESTTSSEEEEEE
T ss_pred             --------CCEEEEEEECCCCCEEEEEe
Confidence                    146678884 4333444443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.74  E-value=9.9e-06  Score=83.67  Aligned_cols=207  Identities=15%  Similarity=0.181  Sum_probs=135.7

Q ss_pred             eeEEEEecCCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcC-Cceeee
Q 001490          781 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS  856 (1068)
Q Consensus       781 v~~l~~s~dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~  856 (1068)
                      ...+++|.||+++.+..   ...|.|.|+...+.+.++..+.    |.-.-|..++-+.+-+.||++.-..+. .|+...
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence            34578999999999987   4779999999999998887443    222222134567788899999999887 455432


Q ss_pred             e----ecccccCe-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcc---c-CCCCceEEEEeeCCCEE
Q 001490          857 K----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRF  927 (1068)
Q Consensus       857 ~----~~~h~~~V-~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~spdg~~l  927 (1068)
                      +    |..-.+++ ..-+++.++..++..+.+|.|+--|+..................   . -.+.-.-+++++...+|
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL  252 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence            2    22222222 23345556666666889999999999887655444444332111   0 01345678999877766


Q ss_pred             EE----EeCC-------eEEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEE-CCCcEEEEEcCCCcEEEEec
Q 001490          928 LL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       928 a~----~~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      .+    +.++       .|.++|+.+++.+..+...  .++.++..|.|.+ +|++.+ .++.+.+||..+|+.+..+.
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            65    2222       4888999999999886643  3577999999886 555544 57899999999999998887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.73  E-value=2.1e-05  Score=82.21  Aligned_cols=221  Identities=14%  Similarity=0.150  Sum_probs=140.2

Q ss_pred             EEEEec-CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCE
Q 001490          715 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY  792 (1068)
Q Consensus       715 ~l~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~  792 (1068)
                      +++|.+ ++..+++-...+.|..|+....                      . .....+      .....+++. ++++ 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~------~~~~G~~~~~~~g~-   53 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL------PGPNGMAFDRPDGR-   53 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES------SSEEEEEEECTTSE-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec------CCCceEEEEccCCE-
Confidence            567787 5655555556677777764432                      1 111111      126778888 5654 


Q ss_pred             EEEEeCCeEEEEEccCceeEEEecC-----CCCCeEEEEEeCCCCCEEEEEECC--------CeEEEEEcCCceeeeeec
Q 001490          793 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE  859 (1068)
Q Consensus       793 l~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~~~  859 (1068)
                      ++++..+.+.++|..+++.......     .....+.+++.| +|++.++....        |.|+.++.. ++......
T Consensus        54 l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~  131 (246)
T PF08450_consen   54 LYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD  131 (246)
T ss_dssp             EEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred             EEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence            5555556667779988865443332     334678999999 88887776544        567777777 55443333


Q ss_pred             ccccCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCc--eeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeE
Q 001490          860 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  935 (1068)
Q Consensus       860 ~h~~~V~~l~~spdg~~l~-s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i  935 (1068)
                       .-.....|+|+||++.|. +-+..+.|..+++....  ......+.......   +..-.+++..+|++.++ ...+.|
T Consensus       132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence             345678999999998765 56677888888886422  33333332222221   13568999999998887 467899


Q ss_pred             EEEECCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEE
Q 001490          936 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF  973 (1068)
Q Consensus       936 ~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~  973 (1068)
                      .+++.+ |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus       208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            999987 8877765554 4589999995 5656655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.73  E-value=1.5e-06  Score=83.74  Aligned_cols=147  Identities=11%  Similarity=-0.041  Sum_probs=107.5

Q ss_pred             eEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001490          375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  454 (1068)
Q Consensus       375 V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  454 (1068)
                      +.++++|+|++++++.+....|..|.+...............++.-.+..|+....  .+|++..||++.|||++.-...
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence            78899999999999999999999999976544332223444555667889998888  7999999999999999864433


Q ss_pred             e-----EeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCC--------cEEEEEEccCCCEEE
Q 001490          455 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--------GCTRMAYSANGRRLF  521 (1068)
Q Consensus       455 ~-----~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~d~~~l~  521 (1068)
                      .     +-..|.+.++.+.|++.+--.+|+..-.-+.+++.|+++......+.....        .+..-.|+.++.-+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence            2     224589999999999765556777777788999999998776554333222        255555555555444


Q ss_pred             EE
Q 001490          522 SC  523 (1068)
Q Consensus       522 ~~  523 (1068)
                      +.
T Consensus       319 v~  320 (344)
T KOG4532|consen  319 VK  320 (344)
T ss_pred             cc
Confidence            43

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.72  E-value=1.1e-07  Score=103.62  Aligned_cols=294  Identities=13%  Similarity=0.152  Sum_probs=187.4

Q ss_pred             CcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEcccc--ccEEEEEEcCCCCcE-EEEEEeCCCcEEEEEC
Q 001490          372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWDA  448 (1068)
Q Consensus       372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~--~~v~~l~~s~d~~~~-~l~s~~~d~~i~iwd~  448 (1068)
                      .+.+.++..+|.|+-+|.++..| +.+-|+...-.  ...-+ .|.  -.|-.+.|+|...+. .+|+.+ ...-.+|++
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~--ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl   98 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT--PPRWL-HHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL   98 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCC--Cceee-eccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence            46788999999999999998888 56667764321  11111 232  356778888865432 455544 445668987


Q ss_pred             CC---CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEcc-CCCEEEEE
Q 001490          449 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSC  523 (1068)
Q Consensus       449 ~~---~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~  523 (1068)
                      ..   ...-..+.+|...|+.+.|++. +...+++++.|-.++.||+++..... .+..-......+.|+- ++..+++.
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCC-CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            63   2334567899999999999875 34589999999999999998866543 3333344556678876 45555554


Q ss_pred             eeCCCCceeEEEEeCCCC-eeeeEEeccccccCCeEEEEEecC-CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCC
Q 001490          524 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  601 (1068)
Q Consensus       524 ~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  601 (1068)
                      .     ...|.+||.+.| .++..+++|.   ..|+.+.|..- ...+.+.+.||+|+.||.............. ..++
T Consensus       178 h-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~pi  248 (1081)
T KOG0309|consen  178 H-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPI  248 (1081)
T ss_pred             c-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcc
Confidence            3     234999999865 5667777766   77888888653 3467788999999999987543222111111 1234


Q ss_pred             ceEEEecCCC--EEEEEECCCeEEE---------EECCC-CceeeeccccccceeeeEEcCCccccccccccCeeeecCC
Q 001490          602 PRICFNKNGT--LLAVIANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  669 (1068)
Q Consensus       602 ~~v~~s~~~~--~l~~~~~dg~i~i---------wd~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1068)
                      ..-.+-|-|.  .+.-.-.+..+.+         |+..+ .+++..+.||.+.|....|-.....            .++
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~------------~~d  316 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKEC------------DGD  316 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccc------------cCC
Confidence            5555555332  2211111123333         33333 3678888899888866655432211            111


Q ss_pred             CCCCcccceeecccccceeeccc
Q 001490          670 PKEDVKPEISVEAENKSEVEKPL  692 (1068)
Q Consensus       670 ~~~~~~~l~s~~~d~~i~~wd~~  692 (1068)
                      .....-.|++-+.|.++|+|-+.
T Consensus       317 ~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  317 YDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             CCccceeEEEeecCCceEeeecc
Confidence            12223468999999999999876

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.72  E-value=3.8e-06  Score=87.63  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=138.6

Q ss_pred             CCeEEEEEccCceeEEEecCC--CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCC
Q 001490          798 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN  875 (1068)
Q Consensus       798 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~  875 (1068)
                      +|+|..||..+|+.+......  .....+.++.  ++..+++++.++.++.||..+|+.+.++.. .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999999887542  2233322332  345677778999999999999998877664 22211111 22455


Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECCCceeeeeeccCCC
Q 001490          876 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS  954 (1068)
Q Consensus       876 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~  954 (1068)
                      .++.++.++.|+.+|..+++..-...........    .........++..++++ .++.+..+|+.+|+.+-.......
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            6676778889999999998864431111111110    12233344447777775 489999999999998766433221


Q ss_pred             c---------CEEEEEEecCCCEEEEEECCCc-EEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001490          955 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1024 (1068)
Q Consensus       955 ~---------~v~~l~fs~dg~~l~t~~~dg~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1024 (1068)
                      .         .+..-....++ .++.++.++. +.+ |+.+++.+.+..     ...     ..  . ...+ +++.|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence            1         11222233345 6777777885 555 999999763222     111     11  1 1223 4678888


Q ss_pred             EeCCCcEEEEeCCCCCCCCc
Q 001490         1025 GLTNGEVYVIEPNEPGDTWA 1044 (1068)
Q Consensus      1025 ~~~dg~i~~w~~~~~~~~~~ 1044 (1068)
                      ++.+|.|..||+...+..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999987776664

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=1.1e-08  Score=113.27  Aligned_cols=215  Identities=15%  Similarity=0.250  Sum_probs=158.1

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe--CCCcEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKV  445 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~--~d~~i~i  445 (1068)
                      +..|...-+|++||-+.+.|++|+..|.|+++++.+|....   ...+|..+|+.+.=+.||..  +++.+  ..--..+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence            66788999999999999999999999999999999997655   56799999999999999994  44333  3335789


Q ss_pred             EECCC-CceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC----CCcEEEEEEccCCCEE
Q 001490          446 WDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRL  520 (1068)
Q Consensus       446 wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~d~~~l  520 (1068)
                      |++.+ +...+++.+.    .++.|+..  .+.-+.|+......+||+++.....++...    ...-+...|+|+..++
T Consensus      1172 W~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             hccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            99864 5556666532    34455432  234455555677899999998776653221    1234678899999888


Q ss_pred             EEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCC
Q 001490          521 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  600 (1068)
Q Consensus       521 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~  600 (1068)
                      +--+         .+||++..+.++.|....   .. ..-.|+|.|..++.-++     |||+++.+.++..+.-.    
T Consensus      1246 lndG---------vLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld---- 1303 (1516)
T KOG1832|consen 1246 LNDG---------VLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD---- 1303 (1516)
T ss_pred             eeCc---------eeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----
Confidence            7522         579999888888776654   22 23459999999999876     99999999888776432    


Q ss_pred             CceEEEecCCCEEEE
Q 001490          601 NPRICFNKNGTLLAV  615 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~  615 (1068)
                      -..+.|+..|..++.
T Consensus      1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred             ceEEEeccCccchhh
Confidence            256888888876654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.70  E-value=1.6e-07  Score=91.77  Aligned_cols=260  Identities=13%  Similarity=0.186  Sum_probs=164.5

Q ss_pred             CCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceee---eeeeeeeccccccceeeeeecCCCcceEEEEECCCCC
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  385 (1068)
Q Consensus       309 h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~  385 (1068)
                      ..+-|++|.|...|. +||+|...|.|.++.-+....-..   ..|+     .....|....--.-+..|..+.|..++.
T Consensus        25 ead~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQ-----she~EFDYLkSleieEKin~I~w~~~t~   98 (460)
T COG5170          25 EADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-----SHELEFDYLKSLEIEEKINAIEWFDDTG   98 (460)
T ss_pred             ccceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhc-----ccccchhhhhhccHHHHhhheeeecCCC
Confidence            345899999999997 679999999999998654331100   0111     0111111100111235788899887653


Q ss_pred             --EEEEEeCCcEEEEEEccCCCc-------------------------c--------------cceEEE-ccccccEEEE
Q 001490          386 --LLGVAYSKHIVQLYAYHGGSD-------------------------A--------------RQQLEI-DAHVGNVNDL  423 (1068)
Q Consensus       386 --~las~~~d~~i~vwd~~~~~~-------------------------~--------------~~~~~~-~~h~~~v~~l  423 (1068)
                        .++..+.|++|++|.+.....                         +              .+.+.. ..|..-|.++
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence              344556899999999854310                         0              000011 3577788999


Q ss_pred             EEcCCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCC-----CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC
Q 001490          424 AFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHG-----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL  495 (1068)
Q Consensus       424 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~  495 (1068)
                      .|..|..  .++++. |=.|.+|+++-...   +..++.|.     ..|++..|+|... ..+...+..|.|++-|++..
T Consensus       179 S~NsD~e--t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~  254 (460)
T COG5170         179 SFNSDKE--TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQS  254 (460)
T ss_pred             eecCchh--eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhh
Confidence            9999988  566654 77899999864322   22333343     4577778887643 46677788899999998732


Q ss_pred             Cc-----e-E--Ee--------cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-eeeeEEecccc------
Q 001490          496 GA-----R-V--DY--------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQL------  552 (1068)
Q Consensus       496 ~~-----~-~--~~--------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~------  552 (1068)
                      ..     . .  .+        ......|..+.|+++|+++++-.     -.++.+||++.. .++.+..-|..      
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-----yltvkiwDvnm~k~pikTi~~h~~l~~~l~  329 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-----YLTVKIWDVNMAKNPIKTIPMHCDLMDELN  329 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-----cceEEEEecccccCCceeechHHHHHHHHH
Confidence            21     1 1  11        11123678899999999999854     457999999854 45555544331      


Q ss_pred             ---ccCCe---EEEEEecCCCEEEEEECCCeEEEEEc
Q 001490          553 ---QHNSV---SVVHFDTAKDQILAAGDDHVIKIWDM  583 (1068)
Q Consensus       553 ---~~~~v---~~~~~~~~~~~l~~~s~dg~i~iwd~  583 (1068)
                         ....|   ..+.|+.|.+.+++|+..+..-++-.
T Consensus       330 d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         330 DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence               11222   34778888899999998877777654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.68  E-value=2.1e-05  Score=81.25  Aligned_cols=285  Identities=12%  Similarity=0.136  Sum_probs=160.4

Q ss_pred             eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEE----------CCCeEEEEEcCCCeEEEEEeCCCC---
Q 001490          531 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---  597 (1068)
Q Consensus       531 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~---  597 (1068)
                      ++++++|..+++.+..+...     -.-.+..+|+++.+++++          ..-.|.+||..+-.+...+.....   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            36999999999988777763     345577899999998754          334689999999998887765432   


Q ss_pred             --CCCCceEEEecCCCEEEEEEC--CCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCC
Q 001490          598 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  673 (1068)
Q Consensus       598 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1068)
                        .......+++.|++++++..-  ...|.|.|+..++.+..+....-    .-+-|.                    + 
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~--------------------~-  146 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPS--------------------G-  146 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEE--------------------E-
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEec--------------------C-
Confidence              123456789999998887643  46788999988877665542211    111110                    1 


Q ss_pred             cccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceec
Q 001490          674 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  753 (1068)
Q Consensus       674 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  753 (1068)
                      .+.+.+.+.||++....++...........+-......-+..-+++..+..++-.+-+|.|+--++........      
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~------  220 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG------  220 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE------
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc------
Confidence            12234445555555544442211111111111111222222334555555566677778777777655432111      


Q ss_pred             cCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEccCceeEEEecCCCCCe
Q 001490          754 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPSPTA  822 (1068)
Q Consensus       754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~i  822 (1068)
                         .-|...+.... ....    ..+.-.-+++++..+.|.+.-    ++       .|.++|+.+++++.++.. ...+
T Consensus       221 ---~~~~~~t~~e~-~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~  291 (342)
T PF06433_consen  221 ---KPWSLLTDAEK-ADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI  291 (342)
T ss_dssp             ---EEEESS-HHHH-HTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred             ---CcccccCcccc-ccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence               11111110000 0000    112234567777665555431    11       388999999999999873 2457


Q ss_pred             EEEEEeCCCCCEEEEEE-CCCeEEEEEcCCceeeeeecc
Q 001490          823 TSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG  860 (1068)
Q Consensus       823 ~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~~~~  860 (1068)
                      .+++++.++.-+|.+.+ .++.+.+||..+|+.+.++++
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            79999995555666554 578999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.66  E-value=2.7e-07  Score=100.61  Aligned_cols=247  Identities=16%  Similarity=0.273  Sum_probs=163.2

Q ss_pred             CceEEEEcCCC--CeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCC-CCEEE
Q 001490          312 SPMSMDFHPVQ--HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLG  388 (1068)
Q Consensus       312 ~V~~v~~spdg--~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spd-g~~la  388 (1068)
                      .|..+.|||.-  .+. ++......-.+|++....-...                ..++.||+..|+.+.|.|. -..||
T Consensus        69 ~vad~qws~h~a~~~w-iVsts~qkaiiwnlA~ss~~aI----------------ef~lhghsraitd~n~~~q~pdVla  131 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYW-IVSTSNQKAIIWNLAKSSSNAI----------------EFVLHGHSRAITDINFNPQHPDVLA  131 (1081)
T ss_pred             hhcceecccCCCCcee-EEecCcchhhhhhhhcCCccce----------------EEEEecCccceeccccCCCCCccee
Confidence            45666777643  233 3334446677888854322211                1237799999999999996 56789


Q ss_pred             EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEE
Q 001490          389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSL  467 (1068)
Q Consensus       389 s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~i  467 (1068)
                      +++.|..+..||+.+...  ....+......-..++|+....  .+.+.+..+.|.+||...| .++..+++|...|+.+
T Consensus       132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~  207 (1081)
T KOG0309|consen  132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI  207 (1081)
T ss_pred             eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence            999999999999988642  2223334445567899987766  4555666778999999876 4678899999999999


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEe-cCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEE---------Ee
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE---------WN  537 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~---------wd  537 (1068)
                      .|..... ..+.+.+.||+|+.||.+........ .....++..-.+.|-|.-...--..  |++.+.+         |+
T Consensus       208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n  284 (1081)
T KOG0309|consen  208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWN  284 (1081)
T ss_pred             HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc--CCeeeeeccccchhhhhc
Confidence            8764322 36889999999999998765543322 2233355555666644432221111  1223333         33


Q ss_pred             CCC-CeeeeEEeccccccCCeEEEEEecCC----------CEEEEEECCCeEEEEEcCC
Q 001490          538 ESE-GAIKRTYQGLQLQHNSVSVVHFDTAK----------DQILAAGDDHVIKIWDMNK  585 (1068)
Q Consensus       538 ~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~s~dg~i~iwd~~~  585 (1068)
                      ..+ .+.+..|.||.   +.|....|-..+          -+|++-+.|.++++|-+..
T Consensus       285 ~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  285 VFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            333 35688899988   666665554322          3689999999999998754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=8e-06  Score=85.22  Aligned_cols=223  Identities=13%  Similarity=0.096  Sum_probs=132.8

Q ss_pred             ccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEE
Q 001490          758 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  836 (1068)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  836 (1068)
                      .+|+.+|..+....+..  ......+. ..+++..++++ .++.+..||..+|+.+.++............   .+..++
T Consensus         7 ~~d~~tG~~~W~~~~~~--~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~   80 (238)
T PF13360_consen    7 ALDPRTGKELWSYDLGP--GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVY   80 (238)
T ss_dssp             EEETTTTEEEEEEECSS--SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEE
T ss_pred             EEECCCCCEEEEEECCC--CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccc
Confidence            34455565566555421  11222222 33355556565 4799999999999999887753221112222   334566


Q ss_pred             EEECCCeEEEEEcCCceeeeee-cccc---cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc--
Q 001490          837 IGMDDSTILIYNARSSEVISKL-EGHS---KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--  910 (1068)
Q Consensus       837 sg~~dg~v~iwd~~~~~~~~~~-~~h~---~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--  910 (1068)
                      +++.++.++.+|..+|+.+... ....   ..........++..++.+..++.|..+|.++|+..-............  
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  160 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS  160 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence            6778889999999999988774 3221   112223333347888888889999999999988654433322221110  


Q ss_pred             CCCCceEEEEeeCCCEEEEEeCCe-EEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEE
Q 001490          911 LAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ  989 (1068)
Q Consensus       911 ~~~~v~~~~~spdg~~la~~~d~~-i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~  989 (1068)
                      ....+..-....++..+++..++. +.+ |..+++.+-...   ...+.. ....++..|+.++.++.|..||+.+|+.+
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  161 SFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             eecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            000122333333554444456665 555 999998653211   122222 25677888888889999999999999987


Q ss_pred             EE
Q 001490          990 CR  991 (1068)
Q Consensus       990 ~~  991 (1068)
                      .+
T Consensus       236 W~  237 (238)
T PF13360_consen  236 WQ  237 (238)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.62  E-value=6.6e-07  Score=87.66  Aligned_cols=258  Identities=13%  Similarity=0.183  Sum_probs=161.6

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCce-----eEEEecCCCC------------CeEEEEEeCCC-CCEEEE
Q 001490          777 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPHD-NNVIAI  837 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~d-~~~las  837 (1068)
                      ....|+++.|...|.||++|. +|.|.+|.-+...     ....+++|..            .|..+.|-.+. ...+..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            466799999999999999998 6889999865432     1223455542            45667765533 335556


Q ss_pred             EECCCeEEEEEcCCcee-------------------------------------e----e-ee-cccccCeEEEEEcCCC
Q 001490          838 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL  874 (1068)
Q Consensus       838 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~~-~~h~~~V~~l~~spdg  874 (1068)
                      .+.|.+|++|.+.....                                     +    + .. ..|.-.|.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            77899999998743200                                     0    0 01 3467778899999998


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCc--ccCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceee----
Q 001490          875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCL----  946 (1068)
Q Consensus       875 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~----  946 (1068)
                      ..++++ .|=.|.+|+++-.....  .+-....+  ......|++..|+|..-.+..  ++.|.|++-|++.....    
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sF--nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSF--NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             heeeec-cceeeeeccccccCCce--EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            888875 46669999987532111  11111111  111135788999998655443  68899999999732211    


Q ss_pred             --ee---------eccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCC-cEEEEeccccccC----CCCccCccc-c
Q 001490          947 --KQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLR----PTTSCLHVY-P 1009 (1068)
Q Consensus       947 --~~---------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~-~~~~~~~~~~~~~----~~~~~~~~~-~ 1009 (1068)
                        ..         .+.+-...|..+.|+++|+|+++-+. -+|.+||+.-. .++..+..+..+.    ...-++.++ -
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence              10         11122567889999999999997654 58999999854 4454443111110    000122333 2


Q ss_pred             eEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490         1010 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus      1010 ~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
                      ..+.|+. |...+++|+..+...++-...+
T Consensus       341 FeisfSg-d~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         341 FEISFSG-DDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             EEEEecC-CcccccccccccceeeeccccC
Confidence            5678888 4577888888777777764333

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.61  E-value=1.5e-05  Score=89.09  Aligned_cols=183  Identities=11%  Similarity=0.063  Sum_probs=119.4

Q ss_pred             EEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC----eEEEEEcCCceeeeee
Q 001490          785 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKL  858 (1068)
Q Consensus       785 ~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~~  858 (1068)
                      =++|||+.+...+  .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+.    ++..-+..+...+..+
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            3567888775555  4778899999988877766333 556789999 888888776322    2333322221111111


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE--eC
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE  932 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~d  932 (1068)
                      .-..  +  -++.++|++...  .++.|.+.|..+    +. .....+....       ....+++||||++++++  .+
T Consensus       277 ni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        277 NIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             chHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCC
Confidence            1000  0  134567887665  367799999887    22 1122333333       35679999999999984  57


Q ss_pred             CeEEEEECCCcee------------eeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCC
Q 001490          933 THLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN  985 (1068)
Q Consensus       933 ~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~  985 (1068)
                      .++.|.|+++.+.            +.+...  .......+|+++|....|-..|..|..||+..
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8999999987653            222222  33445778999999888899999999999987

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.61  E-value=7.8e-06  Score=78.92  Aligned_cols=191  Identities=10%  Similarity=-0.028  Sum_probs=128.1

Q ss_pred             EEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-eee-e-eecccccCeEEEE
Q 001490          793 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI-S-KLEGHSKRVTGLV  869 (1068)
Q Consensus       793 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~-~-~~~~h~~~V~~l~  869 (1068)
                      +++..|.++++++++.+..........-.+.++++++ |++++++.+....|..|.+... +.+ . ....-++.-.+..
T Consensus       132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            3333477788887765443322221222378999999 9999999999999999998753 322 2 2222344456789


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE--EEEE-eCCeEEEEECCCceee
Q 001490          870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLV-HETHLAIYEAEELTCL  946 (1068)
Q Consensus       870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--la~~-~d~~i~vwd~~~~~~~  946 (1068)
                      |+.....+|++..||++.|||+..........-..   ...+.+.++.+.||+-|.+  |..+ .-+.+.|.|++++...
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst---rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST---RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhccc---CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence            99999999999999999999998754332211122   2223368999999987743  3333 4567999999988765


Q ss_pred             eeeccC------C-CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE
Q 001490          947 KQWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV  988 (1068)
Q Consensus       947 ~~~~~~------h-~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~  988 (1068)
                      ..+...      | ...|..-+|+.++.-+.+.+.+ .+.-|++.+...
T Consensus       288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR  335 (344)
T KOG4532|consen  288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSR  335 (344)
T ss_pred             eEEecCccccccccccccccccccCCCcccccccch-hhheeeccccce
Confidence            544322      2 2348888899888877776655 456677665543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.60  E-value=2e-05  Score=86.86  Aligned_cols=267  Identities=13%  Similarity=0.178  Sum_probs=150.2

Q ss_pred             cCCCCeEEEEEc--------CcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEE
Q 001490          319 HPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  390 (1068)
Q Consensus       319 spdg~~lla~gs--------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~  390 (1068)
                      |||++++|+.-.        ..+.+.|||+++++....                    ......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence            789986655321        226788999988765532                    1224678899999999999998


Q ss_pred             eCCcEEEEEEccCCCcccceEEEcc-------c---------cccEEEEEEcCCCCcEEEEEEeCCCc------------
Q 001490          391 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT------------  442 (1068)
Q Consensus       391 ~~d~~i~vwd~~~~~~~~~~~~~~~-------h---------~~~v~~l~~s~d~~~~~l~s~~~d~~------------  442 (1068)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+.|||||+++.++... +..            
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~  136 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPP  136 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSS
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCc
Confidence            5 66799999887743321  1112       0         1123578899999963333221 222            


Q ss_pred             -----------------------EEEEECCCCceee-Ee----ccCCCcEEEEeeeecCCccEEEEE--EcCC---cEEE
Q 001490          443 -----------------------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFSI--SVDG---KIKA  489 (1068)
Q Consensus       443 -----------------------i~iwd~~~~~~~~-~~----~~h~~~v~~i~~~~~~~~~~l~s~--s~dg---~i~v  489 (1068)
                                             +.|+|+.+++... ..    ..-...+..+.|.+  ++..|+..  ..+.   .+.+
T Consensus       137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~  214 (353)
T PF00930_consen  137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL  214 (353)
T ss_dssp             TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred             cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence                                   3344554444321 11    11233455555654  44423332  3322   3566


Q ss_pred             EeCCCCCceEEecCCC-Cc---EEEEEEc-cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeE-EEEEe
Q 001490          490 WLYDSLGARVDYDAPG-LG---CTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS-VVHFD  563 (1068)
Q Consensus       490 wd~~~~~~~~~~~~~~-~~---i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~-~~~~~  563 (1068)
                      +|..++.......... ..   .....+. +++..++..+. ++|-..|++++...+... .+....   ..|. .+.++
T Consensus       215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~---~~V~~i~~~d  289 (353)
T PF00930_consen  215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPR-QLTSGD---WEVTSILGWD  289 (353)
T ss_dssp             EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEE-ESS-SS---S-EEEEEEEE
T ss_pred             EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEccccccee-ccccCc---eeecccceEc
Confidence            6776665544332221 11   2244554 78887777766 777889999999888744 333222   4564 47788


Q ss_pred             cCCCEEEE-EEC----CCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490          564 TAKDQILA-AGD----DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       564 ~~~~~l~~-~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      ++++.|+. +..    ...|+.-++..+..+..+......  ...+.|||++++++....
T Consensus       290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred             CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence            88877765 443    235666677634455555544332  148999999998886554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.57  E-value=9.5e-06  Score=90.65  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=76.0

Q ss_pred             EecCCCEEEEEeCCeEEEEEccC-----ceeEEEecCCCCCeEEEEEeCCCCCEEEEE-ECCCeEEEEEcCCcee-----
Q 001490          786 LSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV-----  854 (1068)
Q Consensus       786 ~s~dg~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~-----  854 (1068)
                      +.++|++... .++.|.+.|..+     .+.+..+. -......+++|| ||++++++ ..+.+|.|.|+.+.+.     
T Consensus       284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            4467887665 467899999998     34444444 455678899999 77766655 4588999999987542     


Q ss_pred             -------eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001490          855 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  893 (1068)
Q Consensus       855 -------~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~  893 (1068)
                             +.+.+--.+ -...+|.++|+...|..-|..|..|++..
T Consensus       361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence                   333332222 34578999999999999999999999986

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.56  E-value=8.4e-05  Score=87.12  Aligned_cols=120  Identities=19%  Similarity=0.257  Sum_probs=84.3

Q ss_pred             eEEEEecCCCEEEEEe-----C-CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEE---CCCeEEEEEcCC-
Q 001490          782 PCFALSKNDAYLFSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS-  851 (1068)
Q Consensus       782 ~~l~~s~dg~~l~~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~-  851 (1068)
                      +.+.|.-||+++|+..     + ..|++||-+ |..-..-....+.-.+++|-| .|.++|+-.   .|+.|.+|.-.. 
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence            5688999999999853     4 679999988 544433333444557899999 888888753   456799997542 


Q ss_pred             --ceeeeeecccccCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCCceeeeeeee
Q 001490          852 --SEVISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQ  903 (1068)
Q Consensus       852 --~~~~~~~~~h~~~V~~l~~spdg~~l~s---~s~dg~i~iwd~~~~~~~~~~~~~  903 (1068)
                        |+....+.....+|..++|+.++..||+   ......|++|-+.+-.......+.
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~  333 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ  333 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe
Confidence              3333334444555999999999999998   555556999999885543333333

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.56  E-value=0.00043  Score=66.99  Aligned_cols=137  Identities=12%  Similarity=-0.056  Sum_probs=89.7

Q ss_pred             cEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccC
Q 001490          476 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  555 (1068)
Q Consensus       476 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~  555 (1068)
                      .+++.|+..+.+..-|..+++......... .+.+-+.- -|++++.|..    .+.+++.+.++|+....+....   .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence            466777777777777777776655433222 33322222 4666777776    4459999999998887777544   2


Q ss_pred             CeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001490          556 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  623 (1068)
Q Consensus       556 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  623 (1068)
                      --......+++..+.+|+.|++.+..|..+...+...+..+..  ..+-+..|....|+.+...|.+.
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence            2233456788999999999999999999999999887766543  23445556333344444444443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.56  E-value=0.00013  Score=70.39  Aligned_cols=147  Identities=14%  Similarity=0.116  Sum_probs=96.7

Q ss_pred             EEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcE
Q 001490          316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  395 (1068)
Q Consensus       316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~  395 (1068)
                      +..-||.+++++.|+..+.++--|..+|+..-+..                    -+.+|.+-+.- -|++++.|+..|.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCc
Confidence            34456677899999999999999999998764311                    12233332222 4778999999999


Q ss_pred             EEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCc
Q 001490          396 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI  475 (1068)
Q Consensus       396 i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~  475 (1068)
                      +++-+.++|+.......+..-  .+ .....+++.  ++..|+.|++.+..|..+..++...+...+...+-++.+. + 
T Consensus        75 lYfl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-  147 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-  147 (354)
T ss_pred             EEEEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-
Confidence            999999999765533222111  11 233466788  8999999999999999999999887644433333333322 2 


Q ss_pred             cEEEEEEcCCcEEEE
Q 001490          476 HFIFSISVDGKIKAW  490 (1068)
Q Consensus       476 ~~l~s~s~dg~i~vw  490 (1068)
                      ..|+.+...|.+.--
T Consensus       148 ~sly~a~t~G~vlav  162 (354)
T KOG4649|consen  148 GSLYAAITAGAVLAV  162 (354)
T ss_pred             ceEEEEeccceEEEE
Confidence            245555555554433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.53  E-value=1.6e-06  Score=83.20  Aligned_cols=209  Identities=14%  Similarity=0.200  Sum_probs=125.9

Q ss_pred             ceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeC
Q 001490          313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  392 (1068)
Q Consensus       313 V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~  392 (1068)
                      |+.+.|+-+.  .|+++..++.+......++.+..     .|+-.....++..  +..|.++-.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence            6677777764  56888888888887776665543     2222222222222  2234444334444445778999999


Q ss_pred             CcEEEEEEccCCCcccceEEEc-cccccEEEEEEcCCCCcEEEEEEe-----CCCcEEEEECCCCceeeEeccCCCcEEE
Q 001490          393 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  466 (1068)
Q Consensus       393 d~~i~vwd~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~  466 (1068)
                      ||.+.+.+.+.-..+.  ..+. .|.+. .+.+....+.  .+.+++     .-+..+.|+++..+.+..-..-...|.+
T Consensus       110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            9999999987622111  1111 12221 1222223343  333322     1234556665533322111112234888


Q ss_pred             EeeeecCCccEEEEEEcCCcEEEEeCCCCCceE-EecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCCC
Q 001490          467 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE  540 (1068)
Q Consensus       467 i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~  540 (1068)
                      ++-+|.. .+.+++|+.||.+-+||.+...... .+..|..++..+.|+| ++..|++++.    +|.+..||..+
T Consensus       185 l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST  255 (319)
T ss_pred             hhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence            8888764 3688899999999999999875444 5667888999999998 6678888876    55699999654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=2.9e-06  Score=87.81  Aligned_cols=300  Identities=14%  Similarity=0.160  Sum_probs=191.0

Q ss_pred             ccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  788 (1068)
                      |...|..+.. ...+++++++-||.++.|.-..                    ..|..+..   ....|...+.+++.+-
T Consensus         8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~--------------------isGvEfVK---hFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSR--------------------ISGVEFVK---HFRAHLGVILSLAVSY   63 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecchhhhhcCCCC--------------------ccceeehh---hhHHHHHHHHhhhccc
Confidence            5556665544 4567799999999999885211                    01111111   1113777888999999


Q ss_pred             CCCEEEEEe--CCeEEEEEccCceeEEEecCCC-CCeEEEEEeCCCC-CEEEEE-ECCCeEEEEEcCCce-eeeee-ccc
Q 001490          789 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN-NVIAIG-MDDSTILIYNARSSE-VISKL-EGH  861 (1068)
Q Consensus       789 dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~-~~lasg-~~dg~v~iwd~~~~~-~~~~~-~~h  861 (1068)
                      ||.+..+..  |..++++|+++...+..++... ...-+...++.+. ..||++ -.+|.+.++|-...- ....+ .-|
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            999999966  6889999998776654433211 1122333344111 234433 467899999976543 33333 349


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeeeeee------ecCCCcccCCCCceEEEEeeCCCEEEE-EeCC
Q 001490          862 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW-GIQTCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  933 (1068)
Q Consensus       862 ~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~------~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~  933 (1068)
                      ..+|..+.+++-+..+++....|.|.-|..+.. +.......      ..+-+....-....++.|+|+|..+++ +.|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            999999999999999999999999999998841 00000000      001111111135789999999999998 7889


Q ss_pred             eEEEEECCCceeeeeeccC-------------------------------C-CcCEEEEEEecCCCEEEEEECCCcEEEE
Q 001490          934 HLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSIH  981 (1068)
Q Consensus       934 ~i~vwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~~~dg~v~vw  981 (1068)
                      .|++++..+|+.++.+-..                               | ...-+.++|...|.+|+-++-=| |+|.
T Consensus       224 kVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvi  302 (558)
T KOG0882|consen  224 KVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVI  302 (558)
T ss_pred             EEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEE
Confidence            9999999998776542110                               1 33446788899999999887665 8999


Q ss_pred             EcCCCcEEEEeccc---------cccCCCCccC-c------ccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490          982 EASNLEVQCRILST---------AYLRPTTSCL-H------VYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus       982 d~~~~~~~~~~~~~---------~~~~~~~~~~-~------~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
                      ++.++++.+.+-..         .+........ .      ..+ .+.+.+ |+.+++++-....++++.
T Consensus       303 n~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~-dpt~~c~a~kk~rfylf~  370 (558)
T KOG0882|consen  303 NLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQK-DPTIVCTAFKKNRFYLFR  370 (558)
T ss_pred             EeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCC-CCeEEEeeeecceEEEEe
Confidence            99999887655311         1111110000 0      011 123556 678999999999999994

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.52  E-value=7.9e-05  Score=82.24  Aligned_cols=304  Identities=13%  Similarity=0.094  Sum_probs=157.8

Q ss_pred             ccCCCEEEEEeeCC-----CCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeE
Q 001490          514 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  588 (1068)
Q Consensus       514 s~d~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~  588 (1068)
                      |||+++++......     +..+.+.++|+.+++....... .   ..+....|+|+|+.++... ++.|++++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            57888877643211     1245699999999876554444 3   5788899999999988876 57899999888744


Q ss_pred             EEEEeCCCC----------------CCCCceEEEecCCCEEEEEEC-CCeEEEEECC---CCceeeeccccccceeeeEE
Q 001490          589 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIAN-ENRIKILETP---ESNSVDAAGVLSDNLRKLSV  648 (1068)
Q Consensus       589 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~i~~~~~  648 (1068)
                      .+... .+.                ...-..+.||||+++|+.... +..+..+.+.   ....      .-..+..+.+
T Consensus        76 ~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y  148 (353)
T PF00930_consen   76 TQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY  148 (353)
T ss_dssp             EESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred             EEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence            43322 220                122357889999999987654 3444443322   1110      0001111111


Q ss_pred             cCCccccccccccCeeeecCCCCCCcccceeeccccc--ceeecccccCCcccceeecC--CccccccEEEEEEecCCce
Q 001490          649 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA  724 (1068)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~  724 (1068)
                      .                            ..|...-.  +.++++...+..   .+..+  .......+..+.|+++++.
T Consensus       149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence            1                            11111122  333444322221   11111  1224567889999999995


Q ss_pred             EEEeecC---ccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001490          725 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G  798 (1068)
Q Consensus       725 l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~~--d  798 (1068)
                      ++....+   ..+.+..                    .|+.++.+.........+--.......|. +++..++..+  +
T Consensus       198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence            5544433   2233322                    23333332222222111122233456665 7776666655  4


Q ss_pred             Ce--EEEEEccCceeEEEecCCCCCeEE-EEEeCCCCCEEEEEECCC----eEEEEEcCCceeeeeecccccCeEEEEEc
Q 001490          799 GV--ISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS  871 (1068)
Q Consensus       799 g~--i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s  871 (1068)
                      |.  |.+++..++.. +.+....-.|+. +.++++++.+..++..++    .|+.-++.++..+..+....+.-..+.||
T Consensus       258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            54  67777776663 355545556755 778884455555666533    66666777233345554433333789999


Q ss_pred             CCCCEEEEEe
Q 001490          872 DALNILVSSG  881 (1068)
Q Consensus       872 pdg~~l~s~s  881 (1068)
                      |||++++...
T Consensus       337 pdg~y~v~~~  346 (353)
T PF00930_consen  337 PDGKYYVDTY  346 (353)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999988543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.51  E-value=1e-07  Score=89.75  Aligned_cols=134  Identities=23%  Similarity=0.275  Sum_probs=100.0

Q ss_pred             cHHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhhccccCCCCHHHHHHHH
Q 001490           13 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA   92 (1068)
Q Consensus        13 ~~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~l~p~~~~~~~~~~~l~   92 (1068)
                      +....+++|++|+++.|++.+......-..... .+.|.+++|+|+|+|..++..+|+++.|+.|+|......+.++.+.
T Consensus         4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~   82 (145)
T PF10607_consen    4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM   82 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            367899999999999999999766422111112 2779999999999999999999999999999877443567888999


Q ss_pred             hhhcccCccC--hhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcc-hhHHHHHHHhhccc
Q 001490           93 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNW  158 (1068)
Q Consensus        93 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~  158 (1068)
                      .||.+++..+  ...+.....  ...|+.|.+.+...+-...-         +| ...|+.++.+....
T Consensus        83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~  140 (145)
T PF10607_consen   83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSA  140 (145)
T ss_pred             HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHH
Confidence            9999887654  234444333  37799999999887665333         33 45688888776543

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.2e-05  Score=80.47  Aligned_cols=251  Identities=13%  Similarity=0.154  Sum_probs=148.4

Q ss_pred             eecCCCcceEEEEECCCCC-EEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEE
Q 001490          367 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       367 ~l~~h~~~V~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~i  445 (1068)
                      ++.+|...|..++|||..+ ++..++.+..|.|.|+++...+.   .+..+ ..+++++|.-|... ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            4778999999999999877 78888999999999999976554   44455 78999999998876 8889999999999


Q ss_pred             EECCCCce-eeEecc--CCCcEEEEeeeec----CCccEEEEEEcCCcEEEEeCCCCC--ceEEecC-CCCcEEEEEEcc
Q 001490          446 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLG--ARVDYDA-PGLGCTRMAYSA  515 (1068)
Q Consensus       446 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~----~~~~~l~s~s~dg~i~vwd~~~~~--~~~~~~~-~~~~i~~~~~s~  515 (1068)
                      ||++..+- +..+.+  ...+|..++.-+.    ..|.+|+..+.+  +..|++....  ....... ..+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986543 222222  2234444432211    122344444433  3445443222  2222222 244566777777


Q ss_pred             CCCEEEEEeeCCCCceeEE----EEeCCCCeeeeEEe----cccc-ccCCeEEEEEecCCCEEEE-EECCCeEEEEEcCC
Q 001490          516 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  585 (1068)
Q Consensus       516 d~~~l~~~~~~~~~~~~i~----~wd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~  585 (1068)
                      -.+.++....++.....++    --|..+|..+..-+    |... ....-..+.-.++.++++. +...+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            6666666554432211111    12222333322111    1110 0011112222345566665 55778899999999


Q ss_pred             CeEEEEEeCCCCCCCCceEEEec-C-CCEEEEEECCCeEEEEECC
Q 001490          586 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP  628 (1068)
Q Consensus       586 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~  628 (1068)
                      ++.++.+....   +|..++... + +.+|++-+ |..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            99999998763   355555443 3 34565555 4578887654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.46  E-value=5e-05  Score=88.94  Aligned_cols=233  Identities=11%  Similarity=0.221  Sum_probs=138.9

Q ss_pred             cccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001490          710 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  789 (1068)
Q Consensus       710 ~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  789 (1068)
                      ...|.++.|..+...++.+...|.+.+-|......                       ....    .-...|.+++||||
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------eivg----~vd~GI~aaswS~D  120 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------EIVG----NVDNGISAASWSPD  120 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------eeee----eccCceEEEeecCC
Confidence            36899999999999999999999988864322111                       0000    14678999999999


Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc-----eee------eee
Q 001490          790 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVI------SKL  858 (1068)
Q Consensus       790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~------~~~  858 (1068)
                      ++.++..+.+..-++...+..++..-.-+.      .-.+ .++++-+| ....=.=+.-..|     +.+      ...
T Consensus       121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~------d~~~-~sk~v~VG-wGrkeTqfrgs~gr~~~~~~~~~ek~~~~~  192 (1265)
T KOG1920|consen  121 EELLALITGRQTLLFMTKDFEPIAEKPLDA------DDER-KSKFVNVG-WGRKETQFRGSEGRQAARQKIEKEKALEQI  192 (1265)
T ss_pred             CcEEEEEeCCcEEEEEeccccchhcccccc------cccc-ccccceec-ccccceeeecchhhhcccccccccccccch
Confidence            999999987555555555555543322111      0011 12222222 1111111111111     111      111


Q ss_pred             cccccCeEEEEEcCCCCEEEEEe-----CCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE----
Q 001490          859 EGHSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----  929 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~----  929 (1068)
                      .-|+ .=++|.|--||+++|+..     ..+.|++||-+. .      ++.......  +.-.+++|-|.|.++|+    
T Consensus       193 ~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~------Lns~se~~~--~l~~~LsWkPsgs~iA~iq~~  262 (1265)
T KOG1920|consen  193 EQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-A------LNSTSEPVE--GLQHSLSWKPSGSLIAAIQCK  262 (1265)
T ss_pred             hhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-h------hhcccCccc--ccccceeecCCCCeEeeeeec
Confidence            1122 235689999999999832     237899999873 2      111111110  23468999999999998    


Q ss_pred             EeCCeEEEEECCCceeeeee---ccCCCcCEEEEEEecCCCEEEE---EECCCcEEEEEcCCCcE
Q 001490          930 VHETHLAIYEAEELTCLKQW---FPISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEV  988 (1068)
Q Consensus       930 ~~d~~i~vwd~~~~~~~~~~---~~~h~~~v~~l~fs~dg~~l~t---~~~dg~v~vwd~~~~~~  988 (1068)
                      ++|+.|.+|.-+. -....+   .+.....+..++|+.++..|++   ......|++|-+.+...
T Consensus       263 ~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  263 TSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             CCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            3566799998643 222211   1122445999999999999987   44444599999988754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.46  E-value=5.1e-07  Score=62.69  Aligned_cols=39  Identities=31%  Similarity=0.595  Sum_probs=37.2

Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          852 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      |+++..+.+|.+.|++|+|+|++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=4.1e-06  Score=86.68  Aligned_cols=258  Identities=16%  Similarity=0.094  Sum_probs=174.3

Q ss_pred             CCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeC-CCcEEEEECC
Q 001490          371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV  449 (1068)
Q Consensus       371 h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~-d~~i~iwd~~  449 (1068)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|...|.+++.+.|+.  ++.|.+. |..++++|++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence            77777776554 567999999999999998654222222224567888999999999998  7888777 9999999988


Q ss_pred             CCceeeEeccCCCcEEEEeee-ecCCc--cEEEEEEcCCcEEEEeCCCCCce--EEecCCCCcEEEEEEccCCCEEEEEe
Q 001490          450 TGSRTYSFEGHGAPVYSLCPH-AKENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       450 ~~~~~~~~~~h~~~v~~i~~~-~~~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~d~~~l~~~~  524 (1068)
                      .-..+.-++...-+ ..++|. ..++-  ..-++.-.++.+.++|-....+.  ..-..|..+|..+.+.+-+..+++.-
T Consensus        85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            65544322211111 111221 11111  22333456788999987665533  34456778999999999999888764


Q ss_pred             eCCCCceeEEEEeCCC------CeeeeEE------eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEE
Q 001490          525 TSKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  592 (1068)
Q Consensus       525 ~~~~~~~~i~~wd~~~------~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  592 (1068)
                      .    .|.|.-|....      .+..-.+      .+.........++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus       164 ~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  164 I----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             c----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            3    56799998763      1111111      111112356789999999999999999999999999998876554


Q ss_pred             eCCC-------------------------------CCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeecc
Q 001490          593 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  637 (1068)
Q Consensus       593 ~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  637 (1068)
                      ....                               ....-..++|...|++|+.++-=| |++.++.++..++.+.
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            3210                               011234577888899998887754 8999999887776654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=5.5e-07  Score=89.79  Aligned_cols=168  Identities=16%  Similarity=0.103  Sum_probs=126.5

Q ss_pred             eEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCC
Q 001490          314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  393 (1068)
Q Consensus       314 ~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d  393 (1068)
                      +.++||-+-.-+-++.+.+-.|-|-|+++|..-.                    + ..+..|.++.|...+.++..|+.+
T Consensus       215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRn  273 (425)
T KOG2695|consen  215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRN  273 (425)
T ss_pred             hhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccC
Confidence            3347765443333445556789999999986542                    1 256789999999999999999999


Q ss_pred             cEEEEEEccCCCcc--cceEEEccccccEEEEEEcC-CCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEE
Q 001490          394 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL  467 (1068)
Q Consensus       394 ~~i~vwd~~~~~~~--~~~~~~~~h~~~v~~l~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~i  467 (1068)
                      |.|...|+..+..-  ..... --|...|+++..-. +++  +|++.+.+|.|++||.+--++   +..+.||-..-.-+
T Consensus       274 geI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l  350 (425)
T KOG2695|consen  274 GEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL  350 (425)
T ss_pred             CcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence            99999999875221  11112 25888999998877 555  788888999999999986666   88899998776666


Q ss_pred             eeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  505 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  505 (1068)
                      -++..+....+++++.|...|+|.++.+....++....
T Consensus       351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            66666666789999999999999999888777665443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.44  E-value=5e-05  Score=83.86  Aligned_cols=139  Identities=9%  Similarity=0.074  Sum_probs=101.1

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      ...|.--+++..++ +++.|+.-|.+.+|+-.+|+.....                  ..+-.+.+..+..|++..++|.
T Consensus        33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAa   93 (726)
T KOG3621|consen   33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAA   93 (726)
T ss_pred             cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhh
Confidence            34666677788887 6799999999999999888776431                  2234456777889999999999


Q ss_pred             EeCCcEEEEEEccCCCcccceEEE---ccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc----eeeEeccCCC
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHGA  462 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~---~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~~  462 (1068)
                      |+..|.|.++-+..+........-   ..|...|++++|++|+.  .+++|...|.|..-.+.+..    ..+.+.....
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds  171 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS  171 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence            999999999998874432221111   13678999999999999  79999999999988877621    1233334556


Q ss_pred             cEEEEee
Q 001490          463 PVYSLCP  469 (1068)
Q Consensus       463 ~v~~i~~  469 (1068)
                      .|..+..
T Consensus       172 ~IVQlD~  178 (726)
T KOG3621|consen  172 EIVQLDY  178 (726)
T ss_pred             ceEEeec
Confidence            6666654

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.42  E-value=0.00083  Score=71.22  Aligned_cols=278  Identities=13%  Similarity=0.126  Sum_probs=138.9

Q ss_pred             EEcCCCCeEEEEEcCcCc--EEEEecCCCcceeeeeeeeeeccccccceeeeeecCCC-cceEEEEECCCCCEEEEEeCC
Q 001490          317 DFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSK  393 (1068)
Q Consensus       317 ~~spdg~~lla~gs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~spdg~~las~~~d  393 (1068)
                      +|.+||++||.++..||.  +.+-|+.+++..+                    |+... .......++|+++.++.....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence            789999999998887765  6667778887664                    22222 222246678999998877667


Q ss_pred             cEEEEEEccCCCcccceEEEccccccEEEEEEc--CCCCcEEEEEEe----------------------CCCcEEEEECC
Q 001490          394 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDAV  449 (1068)
Q Consensus       394 ~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~~  449 (1068)
                      ..|+--|+++.+.. .  .+......+-...|.  .|+.  .++..-                      ..+.|.--|+.
T Consensus       102 ~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen  102 RSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             TEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             CeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            78999999997632 2  333444545445553  4555  333221                      13346666888


Q ss_pred             CCceeeEeccCCCcEEEEeeeecCCccEEEEEEc---CCc-EEEEeCCCCCce-EEecCC--CCcEEEEEEccCCCEEEE
Q 001490          450 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGAR-VDYDAP--GLGCTRMAYSANGRRLFS  522 (1068)
Q Consensus       450 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~-i~vwd~~~~~~~-~~~~~~--~~~i~~~~~s~d~~~l~~  522 (1068)
                      +|+....+. -...+..+.|+|.. ..+|+.|-+   +.. -|+|-+++.... ..+..+  ...+.-=-|.|||..+..
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            887654443 55667777887753 334444322   221 366755543322 222221  223444458999998876


Q ss_pred             Eee-CCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC----------------CeEEEEEcCC
Q 001490          523 CGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNK  585 (1068)
Q Consensus       523 ~~~-~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~  585 (1068)
                      .+. .+..+..|.-+|+.+++.......     ....-..-++||+.++-=+.|                -.|++++++.
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~  329 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA  329 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred             EeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence            544 344466888899998866443222     233345556888777662222                2567788887


Q ss_pred             CeEEEEEeCC--------CCCCCCceEEEecCCCEEEEEEC-CCeEEEEE
Q 001490          586 VQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE  626 (1068)
Q Consensus       586 ~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd  626 (1068)
                      +.........        .....-....|+|||++++..++ .|...||-
T Consensus       330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            7654322211        01112356899999998776654 56655554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.39  E-value=6.1e-06  Score=92.94  Aligned_cols=180  Identities=16%  Similarity=0.177  Sum_probs=131.1

Q ss_pred             CCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEE
Q 001490          789 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  867 (1068)
Q Consensus       789 dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~  867 (1068)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.++-+..   +++++.+|...|+|.+-|..+.+.+.++.+|++.|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            344555555 677888999998888777655555655554   6789999999999999999999999999999999976


Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC--CEEEEEeCCeEE
Q 001490          868 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA  936 (1068)
Q Consensus       868 l~~spdg~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~d~~i~  936 (1068)
                      +..  .|+.|+++|.         |.-|+|||+..-....  +++.+.+       -.-+.|.|.-  +..+++..|...
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            655  6899999885         5568999998744222  2333222       2345666653  344447888888


Q ss_pred             EEECCC---ceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490          937 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       937 vwd~~~---~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd  982 (1068)
                      +-|..+   ...-.......+..+.++++|++|..|+.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            888432   2111111222355699999999999999999999999997

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.38  E-value=3.8e-06  Score=80.71  Aligned_cols=195  Identities=15%  Similarity=0.183  Sum_probs=116.5

Q ss_pred             CCCEEEEEECCCeEEEEEcCCce-eeeeecc-cccCeEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeeeeeee
Q 001490          831 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQIFVWDVDGWGIQTCRSLQ  903 (1068)
Q Consensus       831 d~~~lasg~~dg~v~iwd~~~~~-~~~~~~~-h~~~V~~l~~spdg~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~  903 (1068)
                      -+.-++++..||.+.+++.+.-. ...++.. |.+ -.+.+....++.+.+++-     -+..++|+++..+        
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~--------  170 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK--------  170 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence            46688999999999999876511 1111111 222 112223334444443321     1235677766422        


Q ss_pred             cCCCcccCCCCceEEEEeeCCCEEEE--EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEECCCcEEE
Q 001490          904 TPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       904 ~~~~~~~~~~~v~~~~~spdg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~v  980 (1068)
                      .+.........|++++-.|..+.+++  +.||.+.+||++.......++..|..+|+.+-|.| ++..|+++++||.+.-
T Consensus       171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence            11111111124888999998776665  47789999999999888888889999999999999 6689999999999999


Q ss_pred             EEcCCCcEEEEec---cccccCCCCccC--------cccceEE-EECCCCCCEEEEEeCCCcEEEEe
Q 001490          981 HEASNLEVQCRIL---STAYLRPTTSCL--------HVYPHAI-AAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus       981 wd~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~-~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
                      ||..+.-+-....   -..++....-..        +-.++++ +|+= -+..|++|++-+-|++.+
T Consensus       251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence            9988522211111   001111110000        0001112 1222 367899999999998875

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.38  E-value=7.7e-07  Score=61.77  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=35.2

Q ss_pred             ceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEe
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  339 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd  339 (1068)
                      ++++++.+|++.|++++|+|+++ ++++|+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46788999999999999999997 789999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.32  E-value=0.0019  Score=68.64  Aligned_cols=299  Identities=11%  Similarity=0.113  Sum_probs=136.9

Q ss_pred             EEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEE
Q 001490          512 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  591 (1068)
Q Consensus       512 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  591 (1068)
                      +|.+||+.|+.++. .++...+++.|+.+++..+.-.+..   ........+++.+.++-......|+-.|+++.+....
T Consensus        42 ~ft~dG~kllF~s~-~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDDGRKLLFASD-FDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TTS-EEEEEE--TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             CcCCCCCEEEEEec-cCCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence            67899988888664 5678899999999998877666543   2223456778888887776777899999999877666


Q ss_pred             EeCCCCCCCCceEEEe--cCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCC
Q 001490          592 IDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  669 (1068)
Q Consensus       592 ~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  669 (1068)
                      +..+...  +-...|.  .|+..++-.-      +-. .............+                            
T Consensus       118 y~~p~~~--~g~gt~v~n~d~t~~~g~e------~~~-~d~~~l~~~~~f~e----------------------------  160 (386)
T PF14583_consen  118 YEVPDDW--KGYGTWVANSDCTKLVGIE------ISR-EDWKPLTKWKGFRE----------------------------  160 (386)
T ss_dssp             EE--TTE--EEEEEEEE-TTSSEEEEEE------EEG-GG-----SHHHHHH----------------------------
T ss_pred             EECCccc--ccccceeeCCCccEEEEEE------Eee-hhccCccccHHHHH----------------------------
Confidence            6554332  2223443  3455443221      100 00000000000000                            


Q ss_pred             CCCCcccceeecccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCc-----cEEEEeccCCcc
Q 001490          670 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-----VHLMWRWPRNDL  744 (1068)
Q Consensus       670 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~  744 (1068)
                             +..+.....|..-|+.+++.  ...+     .....+..+.|+|....+++-+-.|     .-|||-+.....
T Consensus       161 -------~~~a~p~~~i~~idl~tG~~--~~v~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~  226 (386)
T PF14583_consen  161 -------FYEARPHCRIFTIDLKTGER--KVVF-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS  226 (386)
T ss_dssp             -------HHHC---EEEEEEETTT--E--EEEE-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred             -------HHhhCCCceEEEEECCCCce--eEEE-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence                   00000001111111111110  0000     1345677889999877777776543     236676543211


Q ss_pred             CCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CC---eEEEEEccCceeEEEecCC
Q 001490          745 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GG---VISLYIVMTFKTILTIMPP  818 (1068)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~---dg---~i~iwd~~~~~~~~~~~~~  818 (1068)
                                          . .....  .......+..=-|+|||..|..-+   .+   .|.-+|..+++......  
T Consensus       227 --------------------~-~~~v~--~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--  281 (386)
T PF14583_consen  227 --------------------N-VKKVH--RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--  281 (386)
T ss_dssp             -----------------------EESS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--
T ss_pred             --------------------c-ceeee--cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--
Confidence                                0 11110  001233445567899998887643   22   47778888886644322  


Q ss_pred             CCCeEEEEEeCCCCCEEEEEECCC----------------eEEEEEcCCceeeee---------eccccc-CeEEEEEcC
Q 001490          819 SPTATSLAFNPHDNNVIAIGMDDS----------------TILIYNARSSEVISK---------LEGHSK-RVTGLVFSD  872 (1068)
Q Consensus       819 ~~~i~~l~~s~~d~~~lasg~~dg----------------~v~iwd~~~~~~~~~---------~~~h~~-~V~~l~~sp  872 (1068)
                      ......+-.++ |+++++-=+.|.                -|+++++..+.....         +.+|.. .=....|||
T Consensus       282 ~p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSP  360 (386)
T PF14583_consen  282 MPWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSP  360 (386)
T ss_dssp             E-SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-T
T ss_pred             CCceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCC
Confidence            22445666677 888876433331                566778877654211         111111 113479999


Q ss_pred             CCCEEEEEe-CCCcEEEEEC
Q 001490          873 ALNILVSSG-GDAQIFVWDV  891 (1068)
Q Consensus       873 dg~~l~s~s-~dg~i~iwd~  891 (1068)
                      ||++++..| ..|...||-+
T Consensus       361 Dgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  361 DGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             TSSEEEEEE-TTSS-EEEEE
T ss_pred             CCCEEEEECCCCCCccEEEE
Confidence            999987654 4666666543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=5.9e-05  Score=77.40  Aligned_cols=250  Identities=13%  Similarity=0.103  Sum_probs=141.4

Q ss_pred             eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp  382 (1068)
                      .+.|.+|...|..++|||..+-|+..++.+..|+|.|+++..++..                   +..| ..+++++|.-
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL  245 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence            4467888889999999999877889999999999999999877765                   3334 7899999998


Q ss_pred             CC-CEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEE------cCCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001490          383 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR  453 (1068)
Q Consensus       383 dg-~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~------s~d~~~~~l~s~~~d~~i~iwd~~~--~~~  453 (1068)
                      |. .+|..|..+|.|.|||+...+.......-.....+|..++.      .+-|.  +++....+  +..|++.-  +..
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence            75 56667778899999999865543221111112234444433      23344  34444333  55666432  222


Q ss_pred             eeEec-cCCCcEEEEeeeecCCccEEEEEEcCCc------EEE-EeCCCCCceEEec-CC-CC------cEEEEEEccCC
Q 001490          454 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDYD-AP-GL------GCTRMAYSANG  517 (1068)
Q Consensus       454 ~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~------i~v-wd~~~~~~~~~~~-~~-~~------~i~~~~~s~d~  517 (1068)
                      ...++ +..+...++..++..+ ..|++.-.+-+      |-. -|...+..+.... .+ +.      .-..+.-.++.
T Consensus       322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            22221 1244444555444322 23444322110      000 0111111111000 00 00      11122224555


Q ss_pred             CEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEe-cCCCEEEEEECCCeEEEEEcC
Q 001490          518 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN  584 (1068)
Q Consensus       518 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~  584 (1068)
                      ++++..+.   ..+.+.+||..+++.++++.-..    +|..++.. -++.-++..-.|..++||..+
T Consensus       401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence            66665543   36679999999999998887643    66665543 234444444456678887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.003  Score=72.93  Aligned_cols=197  Identities=10%  Similarity=0.093  Sum_probs=117.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCC------cEE--EEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCC
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA------PVY--SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP  504 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  504 (1068)
                      .++.++.++.|.-.|..+|+.+.++.....      .+.  .+.+  . ++..++.++.++.|..+|.++++.+......
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            366677789999999999998877654322      010  0111  1 2257888889999999999999988876654


Q ss_pred             CCc-----EE-EEEEccCCCEEEEEeeCCC-----CceeEEEEeCCCCeeeeEEecccccc-----------------CC
Q 001490          505 GLG-----CT-RMAYSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQH-----------------NS  556 (1068)
Q Consensus       505 ~~~-----i~-~~~~s~d~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~-----------------~~  556 (1068)
                      ...     +. +..+. + ..++.++.+.+     .++.++.+|..+|+.+-.+.......                 ..
T Consensus       140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            321     11 11221 2 44444432211     25679999999999887765432000                 00


Q ss_pred             e-EEEEEecCCCEEEEEECCC------------------eEEEEEcCCCeEEEEEeCCCCC----CCCceEEEe----cC
Q 001490          557 V-SVVHFDTAKDQILAAGDDH------------------VIKIWDMNKVQLLTTIDAGGGL----PENPRICFN----KN  609 (1068)
Q Consensus       557 v-~~~~~~~~~~~l~~~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~----~~v~~v~~s----~~  609 (1068)
                      + ...++.+.+..++.++.++                  .|.-+|..+|+.+-......+.    .......+.    -+
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~  297 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD  297 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence            1 1234555567788887665                  7888999999988776532210    000111111    12


Q ss_pred             CC---EEEEEECCCeEEEEECCCCceee
Q 001490          610 GT---LLAVIANENRIKILETPESNSVD  634 (1068)
Q Consensus       610 ~~---~l~~~~~dg~i~iwd~~~~~~~~  634 (1068)
                      +.   .+++++.+|.+...|..+++.+-
T Consensus       298 g~~~~~V~~g~~~G~l~ald~~tG~~~W  325 (488)
T cd00216         298 GKPVPAIVHAPKNGFFYVLDRTTGKLIS  325 (488)
T ss_pred             CCeeEEEEEECCCceEEEEECCCCcEee
Confidence            32   56677778888888888775543

The alignment model contains an 8-bladed beta-propeller.

>smart00668 CTLH C-terminal to LisH motif

Probab=98.20  E-value=2.8e-07  Score=70.75  Aligned_cols=53  Identities=32%  Similarity=0.576  Sum_probs=43.6

Q ss_pred             cHHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcch
Q 001490           13 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI   66 (1068)
Q Consensus        13 ~~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~   66 (1068)
                      ++..++++|++|+|++|++.+............. +.|.|++|+|+|+|+.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence            5789999999999999999998876543333333 8899999999999998764

Alpha-helical motif of unknown function.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=6.6e-06  Score=82.33  Aligned_cols=151  Identities=7%  Similarity=0.063  Sum_probs=112.2

Q ss_pred             EEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCC-----eeeeEEeccccc
Q 001490          479 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-----AIKRTYQGLQLQ  553 (1068)
Q Consensus       479 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-----~~~~~~~~~~~~  553 (1068)
                      ++.+.+..|-+-|+.++-.....  ..+.|.++.|...++.+..|..++    .|..+|++.+     .+...+. |.  
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRng----eI~~iDLR~rnqG~~~~a~rly-h~--  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNG----EIFVIDLRCRNQGNGWCAQRLY-HD--  298 (425)
T ss_pred             ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCC----cEEEEEeeecccCCCcceEEEE-cC--
Confidence            56667777888887765543322  445677888888889998888744    4999999865     2222222 23  


Q ss_pred             cCCeEEEEEec-CCCEEEEEECCCeEEEEEcCCCeE---EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490          554 HNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  629 (1068)
Q Consensus       554 ~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  629 (1068)
                       ..|+++..-. +++++++.+.+|+|.+||.+--+.   +....+|.....-.-+-..+....++++++|...+||.++.
T Consensus       299 -Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  299 -SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             -cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence             5677777665 678999999999999999987666   78888775544444556677778889999999999999999


Q ss_pred             Cceeeecccc
Q 001490          630 SNSVDAAGVL  639 (1068)
Q Consensus       630 ~~~~~~~~~~  639 (1068)
                      +..+.++...
T Consensus       378 ghLl~tipf~  387 (425)
T KOG2695|consen  378 GHLLCTIPFP  387 (425)
T ss_pred             CceeeccCCC
Confidence            9888877643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00011  Score=82.49  Aligned_cols=188  Identities=12%  Similarity=0.114  Sum_probs=130.8

Q ss_pred             CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee
Q 001490          820 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  899 (1068)
Q Consensus       820 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~  899 (1068)
                      ..++|++++   +++++-|+.+|.|++++... .. .+...|+..      ..+|.+++|||.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            456777885   47999999999999998773 33 444446544      56899999999999999999988664332


Q ss_pred             eeeecCCCcccCCCCceEEEEeeC-----CCEEEEEeCCeEEEEECCC-ceeeeeeccCCCcCEEEEEEecCCCEEEEEE
Q 001490          900 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF  973 (1068)
Q Consensus       900 ~~~~~~~~~~~~~~~v~~~~~spd-----g~~la~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  973 (1068)
                      .-++         .++.+++++||     .+.+++|+...+.++.-.- |.........-.++|.++.|  .|.++|-++
T Consensus       109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            2222         25889999999     4567775544477766441 11112223334789999988  567888887


Q ss_pred             CCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCC
Q 001490          974 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus       974 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                      .+| |+|||+.+++.+..+.+....+.    ....+-.+.|.+  ...|+.|=.| +|.+..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence            666 99999999999988885552222    245556688986  3556555444 78888886

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.12  E-value=0.00057  Score=79.27  Aligned_cols=218  Identities=13%  Similarity=0.073  Sum_probs=118.9

Q ss_pred             CCeEEEEEeCCCCCEEEEEE------CCC--eEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001490          820 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD  890 (1068)
Q Consensus       820 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~d-g~i~iwd  890 (1068)
                      ..+.+.++|| +|+.+|...      .|+  .|.+++.. +.......+.  ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678999999 777776654      243  55555642 3332223332  37889999999988887543 2222222


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEE---EECCCceeee----eeccCCCcCEEEEEEe
Q 001490          891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPISSVPISQATFS  963 (1068)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~v---wd~~~~~~~~----~~~~~h~~~v~~l~fs  963 (1068)
                      -..........+............|..+.|||||+++|...+++|+|   -....|+...    .+..+-...+..+.|.
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            21110000000000000001123699999999999999966788887   5555564111    1122223446889999


Q ss_pred             cCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 001490          964 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1043 (1068)
Q Consensus       964 ~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~ 1043 (1068)
                      .++.++ ++..++...+|.+.-.-......     +..  +-.....+++..|   ..++++..+|.+.+=.-......|
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-----~~~--n~~~~v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W  574 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-----PSR--NLSAPVVAVAASP---STVYVTDARAVLQLPNSDSGDQYW  574 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCcccccc-----CCC--CccCceEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence            999855 55555555556544221111111     111  1112235677776   357777778755544334445678


Q ss_pred             ccCCCCccc
Q 001490         1044 AVLPPDEIV 1052 (1068)
Q Consensus      1044 ~~~~~~~~~ 1052 (1068)
                      .+.|...-.
T Consensus       575 ~ev~~l~g~  583 (591)
T PRK13616        575 REVPGLMGP  583 (591)
T ss_pred             eECccccCC
Confidence            888876533

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00026  Score=80.09  Aligned_cols=206  Identities=15%  Similarity=0.167  Sum_probs=131.2

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccC-eEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceee-
Q 001490          826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT-  898 (1068)
Q Consensus       826 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~dg~-----i~iwd~~~~~~~~-  898 (1068)
                      ++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4566 77899999999988887633 3445777777766 555544445578999888765     8999998653222 


Q ss_pred             eeee---ecCC-CcccCCCCceEEEEeeCCCEEEEE-eCCeEEEEECC----CceeeeeeccCCCcCEEEEEEecCCCEE
Q 001490          899 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE----ELTCLKQWFPISSVPISQATFSCDCRMV  969 (1068)
Q Consensus       899 ~~~~---~~~~-~~~~~~~~v~~~~~spdg~~la~~-~d~~i~vwd~~----~~~~~~~~~~~h~~~v~~l~fs~dg~~l  969 (1068)
                      ..++   .... .....+.++.+++.|.+-+.+|+| .+|.|..+.-+    .|....- ...-.++|+.++|-.|++.+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~-~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDY-SHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceee-eccCCCCceeeEEecCCcee
Confidence            2333   2111 111123478999999999999997 67788877543    1211111 11127899999999999873


Q ss_pred             EEEECCCcEEEEEcCCCcEEEE-eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccC
Q 001490          970 FTSFVDGTLSIHEASNLEVQCR-ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1046 (1068)
Q Consensus       970 ~t~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~ 1046 (1068)
                      +.+..-..|.+|.+....+... ..          ...+..-|.++++. ...|++++. ..|.+|+.++.++-|+.-
T Consensus       187 lFv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~~-t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSDG-TYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEEecceeEEEEecCCCcceeeec----------cCCccceeeecCCC-CccEEEecC-ceEEEEcCCCcceeeeec
Confidence            3344456799999994442222 22          11233446777762 233555554 478999998888777654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.11  E-value=5.9e-05  Score=85.33  Aligned_cols=187  Identities=14%  Similarity=0.116  Sum_probs=141.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEE
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  512 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  512 (1068)
                      .++.|+....+..+|+.+++..+......+.|.-++.    +++++.+|...|+|.+-|..+.+.+..+..|.+.+..  
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence            5777888888999999998887776555555666643    6789999999999999999999999999999998864  


Q ss_pred             EccCCCEEEEEeeCCC-----CceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecC-CCEEEEEECCCeEEEEEcCC-
Q 001490          513 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK-  585 (1068)
Q Consensus       513 ~s~d~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~-  585 (1068)
                      |+-.|+.|++|+.+..     .|.+|.+||+++.+.+..+.-+.   ++ .-+.|.|. ...+++++..|...+-|..+ 
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence            5567899999987653     36789999999887766555444   22 44667776 45677888999999988432 


Q ss_pred             CeE-EEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490          586 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  629 (1068)
Q Consensus       586 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  629 (1068)
                      +.+ ......+...+.+..+.++++|..++.|..+|.|.+|.-..
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            111 22222222234488999999999999999999999998443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.10  E-value=0.0055  Score=70.75  Aligned_cols=183  Identities=15%  Similarity=0.186  Sum_probs=105.6

Q ss_pred             CCeEEEEEccCceeEEEecCCCC--------------------Ce-EEEEEeCCCCCEEEEEECCC--------------
Q 001490          798 GGVISLYIVMTFKTILTIMPPSP--------------------TA-TSLAFNPHDNNVIAIGMDDS--------------  842 (1068)
Q Consensus       798 dg~i~iwd~~~~~~~~~~~~~~~--------------------~i-~~l~~s~~d~~~lasg~~dg--------------  842 (1068)
                      ++.+..+|..+|+.+..+.....                    .+ ...++.+ .+.+++.++.++              
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCC
Confidence            45666677777776666543111                    11 1345555 456777777665              


Q ss_pred             ----eEEEEEcCCceeeeeecc--ccc----CeEEEEEc----CCCC---EEEEEeCCCcEEEEECCCCceeeeeeeecC
Q 001490          843 ----TILIYNARSSEVISKLEG--HSK----RVTGLVFS----DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQTP  905 (1068)
Q Consensus       843 ----~v~iwd~~~~~~~~~~~~--h~~----~V~~l~~s----pdg~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  905 (1068)
                          .|.-.|..+|+.+..++.  |..    ......+.    -+|.   .++.++.+|.+...|..+++..-...... 
T Consensus       253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-  331 (488)
T cd00216         253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-  331 (488)
T ss_pred             CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence                799999999998877642  211    00011111    1343   57778889999999999987544322210 


Q ss_pred             CCcccCCCCceEEEEeeCCCEEEE------------------EeCCeEEEEECCCceeeeeeccC-CC------cCEEEE
Q 001490          906 DGVMTLAPSETHIQFHKDQTRFLL------------------VHETHLAIYEAEELTCLKQWFPI-SS------VPISQA  960 (1068)
Q Consensus       906 ~~~~~~~~~v~~~~~spdg~~la~------------------~~d~~i~vwd~~~~~~~~~~~~~-h~------~~v~~l  960 (1068)
                                ..++.+| +...+.                  ..++.+.-.|+.+|+.+-+...+ +.      .+...-
T Consensus       332 ----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~  400 (488)
T cd00216         332 ----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGG  400 (488)
T ss_pred             ----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCc
Confidence                      0112222 111111                  12456777777777765442221 00      111111


Q ss_pred             EEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          961 TFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       961 ~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      .....+.+|++++.||.++.+|..+|+.+.++.
T Consensus       401 ~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         401 SLATAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             ceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            112356788888999999999999999998877

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.0003  Score=78.97  Aligned_cols=178  Identities=12%  Similarity=0.137  Sum_probs=120.8

Q ss_pred             CceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001490          722 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  800 (1068)
Q Consensus       722 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~  800 (1068)
                      ++.++.|+-+|.+++.+.+.+..                  +..          .|...      ..+|.++++++ ||+
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~~------------------~~~----------~~s~~------~~~Gey~asCS~DGk   94 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNPK------------------TNF----------DHSSS------ILEGEYVASCSDDGK   94 (846)
T ss_pred             cceeeeccccceEEEEecCCccc------------------ccc----------ccccc------ccCCceEEEecCCCc
Confidence            56688888899999987654210                  000          02211      56899999999 799


Q ss_pred             EEEEEccCceeEEEecCCCCCeEEEEEeCC----CCCEEEEEECCCeEEEEEcCC-c-eeeeeecccccCeEEEEEcCCC
Q 001490          801 ISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-S-EVISKLEGHSKRVTGLVFSDAL  874 (1068)
Q Consensus       801 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~-~-~~~~~~~~h~~~V~~l~~spdg  874 (1068)
                      |.|..+.+.+...++. ...++.+++++|+    ..+.+++|+.-| +.++.-.- | +....+..-.++|.++.|.  |
T Consensus        95 v~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g  170 (846)
T KOG2066|consen   95 VVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G  170 (846)
T ss_pred             EEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--C
Confidence            9999998888777665 5578999999993    256888899888 77775321 1 1112345567899999995  8


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECC
Q 001490          875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  941 (1068)
Q Consensus       875 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~  941 (1068)
                      +++|-++.+| |+++|+.+.....  .++.+.........-..+.|.++.+ |+.|...+|+|..++
T Consensus       171 ~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  171 NLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             cEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            8999999888 9999999865433  2222222111112345677766655 667777788888877

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.06  E-value=0.003  Score=69.41  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=80.2

Q ss_pred             ceEEEEeeC-CCEEEE-----EeCCe----EEEEECCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490          915 ETHIQFHKD-QTRFLL-----VHETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       915 v~~~~~spd-g~~la~-----~~d~~----i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd  982 (1068)
                      ..++.||-. ...+.+     +.+|.    -.+|+....+  ++..........|.+.+++|+...|+.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            356777763 333433     12332    4567766443  33333345678999999999999999999999999999


Q ss_pred             cCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490          983 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus       983 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
                      ...+..... .           ..+.+..++||| ++..+++|+..|.|.+||+--+
T Consensus       288 ~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  288 TTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence            988744422 1           125567799999 7899999999999999998543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.05  E-value=0.0084  Score=68.28  Aligned_cols=251  Identities=15%  Similarity=0.100  Sum_probs=138.8

Q ss_pred             CceEEEEcCCCCeEEEEEcCcC----cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      .+...++||||++++.+-+..|    ++++.|+.+|+.+.. .+                 ..  ..-..++|.+|++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence            3446789999997666555544    499999999977643 11                 11  112239999999888


Q ss_pred             EEEeCC-----------cEEEEEEccCCCcccceEEEcccccc--EEEEEEcCCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001490          388 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG-  451 (1068)
Q Consensus       388 as~~~d-----------~~i~vwd~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~~~l~s~~~d--~~i~iwd~~~~-  451 (1068)
                      +....+           ..|+.|++.++..-. ...+.+....  ...+..++|++++++.+.+..  ..+.+.|+..+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            776432           347888887764321 2244444333  568899999996333333322  35788888775 


Q ss_pred             ---ceeeEeccCCCcE-EEEeeeecCCccEEEEEE---cCCcEEEEeCCCCCc---eEEecCCCCcEEEEEEccCCCEEE
Q 001490          452 ---SRTYSFEGHGAPV-YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF  521 (1068)
Q Consensus       452 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~  521 (1068)
                         .....+......+ ..+...   ++.+++...   ..+.|...++.....   ...+..+...+.-..+...+.+|+
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence               2333333333333 333322   333443332   335677777777663   223444443333333344555666


Q ss_pred             EEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEE--EE--CCCeEEEEEcCCCeEE
Q 001490          522 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLL  589 (1068)
Q Consensus       522 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~  589 (1068)
                      .... .++...|+++++..+..........  .+.|..+...++++.+..  .|  .-++++.||+.+++..
T Consensus       341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            5543 3457789999998444444444433  245666665566655544  22  4467888898887754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.00035  Score=77.50  Aligned_cols=198  Identities=19%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             cceeeecccCCCCceEEEEcCCCCeEEEEEcCc---CcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  376 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~  376 (1068)
                      ....+.+..-...+..-+|+|+++.+....-..   ..+.++|+.+++.....+                    -.+.-.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~  241 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG  241 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence            344455555556788889999999765553333   349999999988765422                    123344


Q ss_pred             EEEECCCCCEEEEEe-CCc--EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCC
Q 001490          377 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG  451 (1068)
Q Consensus       377 ~~~~spdg~~las~~-~d~--~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~  451 (1068)
                      .-+|||||++||.+. .||  .|.+.|+.++...+    +..-.+.-..-.|+|||++ ++++.+..|  .|.++|++.+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence            578999999998774 344  57778888876322    3333333347789999996 344444455  4666676666


Q ss_pred             ceeeEeccCCCcEEEEeeeecCCccEEEEEEcC-Cc--EEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeC
Q 001490          452 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  526 (1068)
Q Consensus       452 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~  526 (1068)
                      .. ..+....+.-.  ...+++||++++..+.. |.  |.+.|+.+... .............++.++|+.++..+..
T Consensus       317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence            54 33322222111  22335688888877743 44  55555555443 2222223334456788899888876643

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00074  Score=76.55  Aligned_cols=203  Identities=11%  Similarity=0.104  Sum_probs=134.9

Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCC-eEEEEEeCCCCCEEEEEECCC-----eEEEEEcCCc----
Q 001490          784 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS----  852 (1068)
Q Consensus       784 l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~----  852 (1068)
                      -++++.+..+|.|+ +|.|.+.+-. .+.++.++.+... ++.+-... +..+|++.+.|+     .++||++..-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            35678888899888 7888877643 4555777777666 44444433 446888877765     5899998642    


Q ss_pred             --eee--eeecc-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeC
Q 001490          853 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  923 (1068)
Q Consensus       853 --~~~--~~~~~-----h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  923 (1068)
                        +++  ..+..     ...++.+++.|.+-+.+|.|-.+|.|..+.=+--.....+..-...+.    .+|+.+++..|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence              223  12222     345788999999999999999999998885432221111111122222    37999999999


Q ss_pred             CCE-EEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          924 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       924 g~~-la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      ++- +.++.-..|.+|.+....+.......|+....+..|++-...+++++ +..+.+|+.+.......+.
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            988 45567788999999844433333566788888888887655455554 4579999988555543343

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.02  E-value=0.0022  Score=65.15  Aligned_cols=198  Identities=9%  Similarity=0.096  Sum_probs=113.5

Q ss_pred             eeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       303 ~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp  382 (1068)
                      .+.|.+-.++++.++|.|+.++|+|+....+.|...+. +|+.++...                 +.+ -+..-.|++..
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g   74 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLG   74 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-S
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEEC
Confidence            35667766789999999998889999999999988886 577776533                 333 35678899988


Q ss_pred             CCCEEEEEeCCcEEEEEEccCCCcc---cc--eEEE--c-cccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCC---C
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDA---RQ--QLEI--D-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---G  451 (1068)
Q Consensus       383 dg~~las~~~d~~i~vwd~~~~~~~---~~--~~~~--~-~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~---~  451 (1068)
                      ++.++++--.++.+.++++......   ..  ...+  . .+...+-.++|.+.++.  |+.+-...-..++.+..   +
T Consensus        75 ~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~  152 (248)
T PF06977_consen   75 NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGG  152 (248)
T ss_dssp             TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-S
T ss_pred             CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCc
Confidence            8888877666899999998543221   11  1111  1 24456899999999885  44444455555555432   2


Q ss_pred             ceeeE--------eccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC---------CcEEEEEEc
Q 001490          452 SRTYS--------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYS  514 (1068)
Q Consensus       452 ~~~~~--------~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s  514 (1068)
                      ..+..        .......+.++++++. .+++++.......|..+| ..++.+..+....         .....|+|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  153 FDLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             S--EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             cceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence            11111        1123455788888865 567888888888898888 4444443333222         257889999


Q ss_pred             cCCCEEEEE
Q 001490          515 ANGRRLFSC  523 (1068)
Q Consensus       515 ~d~~~l~~~  523 (1068)
                      ++|++.++.
T Consensus       231 ~~G~LYIvs  239 (248)
T PF06977_consen  231 PDGNLYIVS  239 (248)
T ss_dssp             TT--EEEEE
T ss_pred             CCCCEEEEc
Confidence            999776664

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.98  E-value=0.044  Score=63.52  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=43.9

Q ss_pred             CeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccc
Q 001490          799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  861 (1068)
Q Consensus       799 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h  861 (1068)
                      |.+.-+|+.+++...+..............  .+.+++.++.||.++.+|.+||+.+..++-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            568889999999888766433222222222  3447777888999999999999998877643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.97  E-value=0.00088  Score=74.37  Aligned_cols=195  Identities=14%  Similarity=0.074  Sum_probs=121.0

Q ss_pred             EccccccEEEEEEcCCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEE-EEEcCCc--E
Q 001490          413 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--I  487 (1068)
Q Consensus       413 ~~~h~~~v~~l~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~-s~s~dg~--i  487 (1068)
                      +..-...+..-+|+|+++.+..++-...+  .+.++|+.+++....+. ..+.-..-.|+|  ||+.|+ +...||.  |
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp--DG~~l~f~~~rdg~~~i  264 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP--DGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC--CCCEEEEEECCCCCccE
Confidence            34445567888999999964444433333  59999999887655443 122222234544  666555 4556776  4


Q ss_pred             EEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCC
Q 001490          488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  567 (1068)
Q Consensus       488 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  567 (1068)
                      .+.|+....... +....+.-..-.|+|||++++..+ ++.|.-.|++++.+.+...+......    .-..-.|+|||+
T Consensus       265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~----~~~~p~~SpdG~  338 (425)
T COG0823         265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG----GNSNPVWSPDGD  338 (425)
T ss_pred             EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC----CCcCccCCCCCC
Confidence            555666655333 333333334678999999999886 56667789999988776533322222    222667999999


Q ss_pred             EEEEEEC-CCe--EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490          568 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  619 (1068)
Q Consensus       568 ~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  619 (1068)
                      +++..+. +|.  |.+.|+.++...+.+....   ....-.+.++++.+...+..
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence            9988663 344  6667776666554444322   23456788888877765543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.95  E-value=0.0017  Score=72.46  Aligned_cols=223  Identities=10%  Similarity=0.068  Sum_probs=119.5

Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      +......+..+.++|+|++++++ .+|.-.|+.....   +.     ...+.-...+|.+.++   +++-...++|.|+.
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK   95 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence            33445568899999999999995 6777788873322   21     2234556789999665   66666688899964


Q ss_pred             CCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      --+.+....++. ...+..+..     |.+|...+. +.|.+||+.+.+.+..+...  +|..+.|+++|.+++..+.  
T Consensus        96 n~~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~--  164 (443)
T PF04053_consen   96 NFKNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK--  164 (443)
T ss_dssp             TTEE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred             cCccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence            233333233332 123444421     555655554 48999999999888888755  3889999999999998873  


Q ss_pred             CCceeEEEEeCCCC-----------eeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeE--EEEEeC
Q 001490          528 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDA  594 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~  594 (1068)
                         ..+++++....           .....+....   ..|.+.+|..+  .++-.+.. .|+.  +-.|+.  +..+. 
T Consensus       165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld-  232 (443)
T PF04053_consen  165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD-  232 (443)
T ss_dssp             ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S-
T ss_pred             ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC-
Confidence               34677654332           0222222212   57888889766  44444444 6666  333433  33332 


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCC
Q 001490          595 GGGLPENPRICFNKNGTLLAVIANENRIKILETPE  629 (1068)
Q Consensus       595 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  629 (1068)
                          .++.-+.+.+..+.++....++.+..+.+..
T Consensus       233 ----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 ----KPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ----S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ----CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence                2356677888777888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.93  E-value=0.017  Score=63.79  Aligned_cols=94  Identities=14%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             EEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCE
Q 001490          533 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  612 (1068)
Q Consensus       533 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  612 (1068)
                      -.+|+....+..+.....-.....+.+++++|+++.++.|+.||.|.+||...+..... ...   -....++|+|+|..
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~---~~P~~iaWHp~gai  313 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAE---FIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eec---ccceEEEEcCCCcE
Confidence            44566655443222111111136899999999999999999999999999877644332 211   23578999999999


Q ss_pred             EEEEECCCeEEEEECCCC
Q 001490          613 LAVIANENRIKILETPES  630 (1068)
Q Consensus       613 l~~~~~dg~i~iwd~~~~  630 (1068)
                      +++|+..|.+.+||+.-.
T Consensus       314 ~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCceEEEEEeecC
Confidence            999999999999998754

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.88  E-value=0.0061  Score=60.34  Aligned_cols=256  Identities=16%  Similarity=0.156  Sum_probs=143.4

Q ss_pred             CeEEEEEecCCCE-EEEEECCCe-EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEECC
Q 001490          556 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP  628 (1068)
Q Consensus       556 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~  628 (1068)
                      .-..++|+|.... ++.+-.-|+ ..++|..+.+...++.....-.-.-.-.|||||++|+..-.|     |.|-|||..
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            4455778887544 344555555 578999988877776544332223345799999999876443     678888876


Q ss_pred             CCc-eeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCc
Q 001490          629 ESN-SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  707 (1068)
Q Consensus       629 ~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  707 (1068)
                      .+- .+..+..                                                                     
T Consensus       149 ~~fqrvgE~~t---------------------------------------------------------------------  159 (366)
T COG3490         149 EGFQRVGEFST---------------------------------------------------------------------  159 (366)
T ss_pred             cccceeccccc---------------------------------------------------------------------
Confidence            431 1111110                                                                     


Q ss_pred             cccccEEEEEEecCCceEEEeecCccEEEE-eccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEE
Q 001490          708 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  786 (1068)
Q Consensus       708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  786 (1068)
                       |.-....+.+.+||+.++...  |.|+.- ++...+++.+..   .-.+.+.+..+|..+....++..-+...|+.++.
T Consensus       160 -~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~  233 (366)
T COG3490         160 -HGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI  233 (366)
T ss_pred             -CCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence             222334566777777665543  233333 222222211111   0123445666777666666654346778999999


Q ss_pred             ecCCCEEEEEe-CC----e-EEEEEccCceeEEEecC-------CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce
Q 001490          787 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  853 (1068)
Q Consensus       787 s~dg~~l~~~~-dg----~-i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  853 (1068)
                      .+||..++.+- .|    . --+=-...++.+.-+..       ....|-+++..-+++-..++.-..+...+||..+|.
T Consensus       234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            99998887663 11    1 11111123333333322       224678888887455555555566688899999998


Q ss_pred             eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          854 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       854 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      .+..-.--  ....++  +.+.-++..+.+|.+.++.
T Consensus       314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence            76543211  112222  2334455566778777763

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=97.86  E-value=9.5e-06  Score=78.04  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=97.4

Q ss_pred             CccccccCccc---------cHHHHHHHhhCCChHHHHHhhccCCCC--CCcccceeEEEeeeehhhhhhcCCcchHHHH
Q 001490            2 HRLERESRFYF---------DMKFFEDMILDGKWEDVEQYLSSFTKV--DDNRYSTKIYFEIRKQNFFEALDGHDIAKAL   70 (1068)
Q Consensus         2 ~~le~esg~~~---------~~~~~~~~il~G~w~~~~~~l~~~~~~--~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~   70 (1068)
                      ....+|+|+..         +=...|.+|..|+-++|+..+..+...  +.+.   .+.|.+.+|+++|++..+...+|+
T Consensus        47 ~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l~F~Lq~q~lIEliR~~~~eeal  123 (228)
T KOG2659|consen   47 EKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---ELFFHLQQLHLIELIREGKTEEAL  123 (228)
T ss_pred             HHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34567888776         146788999999999999999887422  2221   166999999999999999999999


Q ss_pred             HHHHhhccccCCCCHHHHHHHHhhh---cccCccChhhhhhhcCChHHHHHHHHHHHHhhhccCccccccccCCCcchhH
Q 001490           71 NILKKDLKDFAPGNEELFKELAQLL---TLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQR  147 (1068)
Q Consensus        71 ~~L~~~l~p~~~~~~~~~~~l~~ll---~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~r  147 (1068)
                      +++|++|+|+..-++..++.|-..|   ..+...+.+...-   .....|.++.+.+...|=...-   ..     -..+
T Consensus       124 ~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l---~~~s~R~kvA~~vN~aiL~~~~---~~-----~~~~  192 (228)
T KOG2659|consen  124 EFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAEL---LSQSLRQKVASEVNSAILASQE---HE-----SEPK  192 (228)
T ss_pred             HHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHH---HHHHHHHHHHHHHHHHHHHHhc---cc-----ccch
Confidence            9999999999876666666555433   3343322222211   1145688888888776544222   01     1446


Q ss_pred             HHHHHHhhcccc
Q 001490          148 LRRLINQSLNWQ  159 (1068)
Q Consensus       148 L~~ll~qa~~~Q  159 (1068)
                      |..||+.-+..|
T Consensus       193 l~~llk~~~~~~  204 (228)
T KOG2659|consen  193 LPFLLKLISWAQ  204 (228)
T ss_pred             HHHHHHHHHHHH
Confidence            777774444444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.84  E-value=0.0076  Score=61.33  Aligned_cols=215  Identities=11%  Similarity=0.101  Sum_probs=116.3

Q ss_pred             EecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001490          814 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDVD  892 (1068)
Q Consensus       814 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~  892 (1068)
                      .+.+-...+..++|.|+++.++++....+.|..++.. |+.++++.-. .+..-.|++..++.++++.-.++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4555666799999999667788888888999999874 7877766432 3558889999888888776679999999984


Q ss_pred             CCc--e--eeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe-CCeEEEEECCC---ceeeee-----e--ccCCCcCE
Q 001490          893 GWG--I--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEE---LTCLKQ-----W--FPISSVPI  957 (1068)
Q Consensus       893 ~~~--~--~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-d~~i~vwd~~~---~~~~~~-----~--~~~h~~~v  957 (1068)
                      ...  .  .....+..... ......+..++|.|.+..|.+.. ..-..||.+..   ...+..     +  .......+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ---TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             ccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            322  1  11111111111 11113588999999877777654 33355555543   111110     0  11235568


Q ss_pred             EEEEEecCC-CEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001490          958 SQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1034 (1068)
Q Consensus       958 ~~l~fs~dg-~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w 1034 (1068)
                      ++++|.|.. .+++.......|..+| .+|+++..+....-. ++.....-.+-.|+|+| +|+ |...+.-+..++|
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~-~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF-HGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG-GG-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc-cCcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence            899999954 5666666778899999 778877666532210 00011223456799998 554 5555566666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.83  E-value=0.075  Score=61.66  Aligned_cols=150  Identities=9%  Similarity=0.112  Sum_probs=88.8

Q ss_pred             eEEEEEcCCceeeeeecccccCeE---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCceeeee------ee--
Q 001490          843 TILIYNARSSEVISKLEGHSKRVT---------GLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCR------SL--  902 (1068)
Q Consensus       843 ~v~iwd~~~~~~~~~~~~h~~~V~---------~l~~spdg~---~l~s~s~dg~i~iwd~~~~~~~~~~------~~--  902 (1068)
                      +|.--|++||+....++.....+.         -+.+-.+|+   .++.+..+|.+++.|-.+++.....      ..  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            677778999998877765222121         122334676   7889999999999999998753110      00  


Q ss_pred             --ecCCCccc---------------------CCC--CceEEEEeeCCCEEEE-EeC------------------------
Q 001490          903 --QTPDGVMT---------------------LAP--SETHIQFHKDQTRFLL-VHE------------------------  932 (1068)
Q Consensus       903 --~~~~~~~~---------------------~~~--~v~~~~~spdg~~la~-~~d------------------------  932 (1068)
                        ....+...                     ..+  .-..++++|+..++.+ ..+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              00000000                     000  0122667776666554 111                        


Q ss_pred             ---------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490          933 ---------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS  994 (1068)
Q Consensus       933 ---------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~  994 (1068)
                               +.+.-+|+.+|+..-+....  .+...-...-.|.+++.++.||.++.+|..+|+.+.++..
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~--~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKED--FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCC--CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence                     34777888888776543221  1111111223555777788899999999999999988874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=0.0065  Score=67.83  Aligned_cols=219  Identities=17%  Similarity=0.187  Sum_probs=118.5

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee
Q 001490          779 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  858 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~  858 (1068)
                      ..+..+.++|+|++++++++|...|+.....+....     +.-...+|.+ .++ +|+-...++|.|+.--+.+....+
T Consensus        33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence            346789999999999999999999998655444332     2345688987 554 666666889999743333332333


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEE
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  938 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vw  938 (1068)
                      ... ..+..|-.   |.+|...+.+ .|.+||.++++     .+....-     ..|..+.||++|.++|...+..++|+
T Consensus       106 ~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v-----~~vk~V~Ws~~g~~val~t~~~i~il  170 (443)
T PF04053_consen  106 KLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDV-----SAVKYVIWSDDGELVALVTKDSIYIL  170 (443)
T ss_dssp             --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEEE
T ss_pred             cCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEec-----CCCcEEEEECCCCEEEEEeCCeEEEE
Confidence            321 12343333   8888877655 79999999865     3333221     13789999999999999888899998


Q ss_pred             ECCCc-----------eeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE--EEEeccccccCCCCccC
Q 001490          939 EAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSCL 1005 (1068)
Q Consensus       939 d~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~ 1005 (1068)
                      +.+..           ..+.. ...-...|.+.+|..| -++.|. .. .++.  +..|+.  ++.+.           .
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld-----------~  233 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD-----------K  233 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------S
T ss_pred             EecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------C
Confidence            86543           01111 1111567888888877 344433 33 6665  444543  22222           2


Q ss_pred             cccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490         1006 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus      1006 ~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
                      +++.  +.+.| ..+.+.....|+.|..+.++..
T Consensus       234 ~~yl--lgy~~-~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  234 PLYL--LGYLP-KENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             --EE--EEEET-TTTEEEEE-TT--EEEEE--HH
T ss_pred             ceEE--EEEEc-cCCEEEEEECCCCEEEEEECHH
Confidence            3443  34445 3478888999999988887543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.82  E-value=0.0033  Score=70.02  Aligned_cols=197  Identities=12%  Similarity=0.130  Sum_probs=117.8

Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceee
Q 001490          601 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  680 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  680 (1068)
                      +.--+++..+++++.|++.|.+++|+-..+.....-.                                           
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-------------------------------------------   72 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-------------------------------------------   72 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------
Confidence            4455677788999999999999999877653221110                                           


Q ss_pred             cccccceeecccccCCcccceeecCCccccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccC
Q 001490          681 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  760 (1068)
Q Consensus       681 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~  760 (1068)
                                                .+..+.+....++++..++++++..|.|.++.++.... ...            
T Consensus        73 --------------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~------------  113 (726)
T KOG3621|consen   73 --------------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDL------------  113 (726)
T ss_pred             --------------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Ccc------------
Confidence                                      01223455667788888888888889998887654211 000            


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEccCc----eeEEEecCCCCCeEEEEEeCCCCCEE
Q 001490          761 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVI  835 (1068)
Q Consensus       761 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~l  835 (1068)
                            .... .-...|...|+|++|++|+..+.+|+ .|+|..-.+.+.    -..+.+......|..+.+..  +.+|
T Consensus       114 ------~~~t-~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LL  184 (726)
T KOG3621|consen  114 ------DYVT-PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLL  184 (726)
T ss_pred             ------eeec-cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceeh
Confidence                  1111 11113788999999999999999998 499988888762    11233444567788888774  4455


Q ss_pred             EEEECCCeEEEEEcCCce--eeeeeccccc-CeEEEEEcCC----CCEEEEEeCCCcEEEEECC
Q 001490          836 AIGMDDSTILIYNARSSE--VISKLEGHSK-RVTGLVFSDA----LNILVSSGGDAQIFVWDVD  892 (1068)
Q Consensus       836 asg~~dg~v~iwd~~~~~--~~~~~~~h~~-~V~~l~~spd----g~~l~s~s~dg~i~iwd~~  892 (1068)
                      ++...-  -.+++.+.+.  .+..-. ..+ .-...+|-|.    .+-.+.+++-| .|+|..+
T Consensus       185 VStl~r--~~Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead  244 (726)
T KOG3621|consen  185 VSTLTR--CILCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEAD  244 (726)
T ss_pred             Hhhhhh--hheeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCC-CceEEee
Confidence            543322  3445554332  111111 111 1233455543    34455566666 6888765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.0079  Score=66.90  Aligned_cols=208  Identities=13%  Similarity=0.147  Sum_probs=146.3

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEEC---CCeEEEEEcCCcee
Q 001490          780 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEV  854 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~  854 (1068)
                      ....+++++++..+.+..  .+.|.+.|..+.+......... ....+++++ +++.+.++..   ++++.+.|..+++.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence            345788889988666665  5889999988777766654322 667899999 6655555444   68999999999888


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE--e
Q 001490          855 ISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H  931 (1068)
Q Consensus       855 ~~~~~~h~~~V~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~  931 (1068)
                      +.....-..+ ..++++|+|+.+... ..++.|.+.|..+.....    ............-..++++|+|.++.+.  .
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEecc
Confidence            8775543344 889999999965554 478899999977744221    1100011111235679999999987763  2


Q ss_pred             C--CeEEEEECCCceeeeeecc-CCCcCEEEEEEecCCCEEEEEECC-CcEEEEEcCCCcEEEEeccc
Q 001490          932 E--THLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRILST  995 (1068)
Q Consensus       932 d--~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~d-g~v~vwd~~~~~~~~~~~~~  995 (1068)
                      +  +.+.+.|..++........ +-. ....+.++|+|.++.+.... +.+.+-|..+......+...
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~  294 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG  294 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence            2  5899999988877664222 212 45678999999998887544 88999999999888776633

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.82  E-value=0.0061  Score=67.08  Aligned_cols=281  Identities=12%  Similarity=0.131  Sum_probs=144.0

Q ss_pred             cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490          712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  791 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  791 (1068)
                      .|..+.|+++...++++...|.|.||.+..+..........                            -..+.+.+-  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~----------------------------~~~~~~~~~--   52 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP----------------------------DLDYNFRRF--   52 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc----------------------------ccCcccccc--
Confidence            57889999998889999999999999987654321000000                            000000000  


Q ss_pred             EEEEEeCCeEEEEEccC---------ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeee--ecc
Q 001490          792 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG  860 (1068)
Q Consensus       792 ~l~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--~~~  860 (1068)
                         ...++.-.+-|+..         ..+...+....++|++++.|.  =-++|+|..+|.+.|.|++....+..  +..
T Consensus        53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~  127 (395)
T PF08596_consen   53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE  127 (395)
T ss_dssp             ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred             ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence               00000111122211         223334445578999999984  45999999999999999987665543  222


Q ss_pred             ------cccCeEEEEEc-----CCC---CEEEEEeCCCcEEEEECCC--CceeeeeeeecCCCcccCCCCceEEE-EeeC
Q 001490          861 ------HSKRVTGLVFS-----DAL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD  923 (1068)
Q Consensus       861 ------h~~~V~~l~~s-----pdg---~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~-~spd  923 (1068)
                            ....|+++.|+     .|+   -.|+.|...|.+.+|.+.-  +..-..........+.   +.+..+. |+.+
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~  204 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD  204 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence                  33468888887     233   5688889999999998752  1111111111111111   2344433 3222


Q ss_pred             ---------------------CCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEe-----cCCCEEEEEECCCc
Q 001490          924 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGT  977 (1068)
Q Consensus       924 ---------------------g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~t~~~dg~  977 (1068)
                                           ..+++++.+..++|+...+.+...... ........+++-     ..+..|++-..+|.
T Consensus       205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~  283 (395)
T PF08596_consen  205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS  283 (395)
T ss_dssp             T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred             CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence                                 125666889999999999888776655 222334445553     36678888999999


Q ss_pred             EEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490          978 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus       978 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
                      |+++.+...+.+..........    ...+.  ..++++ +|+.++-.+ ...+.++.+..+
T Consensus       284 i~i~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv~~~  337 (395)
T PF08596_consen  284 IRIYSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFSVWGE  337 (395)
T ss_dssp             EEEEETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEEES-
T ss_pred             EEEEECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEEEEcc
Confidence            9999999999998877321110    11122  244566 577655554 345555554433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.02  Score=65.28  Aligned_cols=249  Identities=12%  Similarity=0.087  Sum_probs=128.8

Q ss_pred             ceEEEEECCCCCEEEEE-eCC----cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEe-C--------
Q 001490          374 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D--------  439 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~-~~d----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~-~--------  439 (1068)
                      .+..+++||||+++|.+ +..    .+++++|+++|+.+..  .+...  ....+.|.+|++. ++.+.. .        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence            44578899999999977 333    3699999999965432  11111  1223999999985 333332 2        


Q ss_pred             -CCcEEEEECCCCcee--eEeccCCCcEEEEeeeecCCccEEEEEEcC----CcEEEEeCCCC----CceEEecCCCCcE
Q 001490          440 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPGLGC  508 (1068)
Q Consensus       440 -d~~i~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~d----g~i~vwd~~~~----~~~~~~~~~~~~i  508 (1068)
                       ...|+.|.+.++..-  ..+.........+....+.|+++|+..+..    ..+.+.++...    .....+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence             224888888877543  444444444322233335577777655433    23677777664    2222322222233


Q ss_pred             EEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee---eeEEeccccccCCeEEEEEecCCCEEEE-EECCC--eEEEEE
Q 001490          509 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIWD  582 (1068)
Q Consensus       509 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg--~i~iwd  582 (1068)
                      ....-...+.+++. +..+...+.|...++.....   ...+..+.   ..+.-..+...+++|+. ...++  .|++++
T Consensus       280 ~~~v~~~~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  280 EYYVDHHGDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             EEEEEEETTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEccCCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence            22222233434433 33444567788888887653   22344333   32233333344555555 44444  588899


Q ss_pred             cCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEECCCCce
Q 001490          583 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS  632 (1068)
Q Consensus       583 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~  632 (1068)
                      +..+.....+..... ..|..+...+++..+.....    -+++..||+.+++.
T Consensus       356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            984555555554432 22344444455554433222    36788888887754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.013  Score=65.49  Aligned_cols=199  Identities=17%  Similarity=0.165  Sum_probs=111.5

Q ss_pred             EEEecCCCEEEEEeCC------------eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC
Q 001490          784 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  851 (1068)
Q Consensus       784 l~~s~dg~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  851 (1068)
                      ++.+|.|..+|...+.            .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+. 
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence            4566666666666544            58899876 566666554448999999997 44 55567789999999986 


Q ss_pred             cee-------eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-eeeeeec-CCCcc--cCCCCceE-EE
Q 001490          852 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQT-PDGVM--TLAPSETH-IQ  919 (1068)
Q Consensus       852 ~~~-------~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~-~~~~~--~~~~~v~~-~~  919 (1068)
                      |+.       +....-....+....+..+|-.++  ..++.+.+-  .+.... ..+.+.. +....  ........ ..
T Consensus       110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~  185 (410)
T PF04841_consen  110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPL  185 (410)
T ss_pred             CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceE
Confidence            333       111111222233334444553333  334444333  222211 1011111 11000  00001111 33


Q ss_pred             EeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccc
Q 001490          920 FHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST  995 (1068)
Q Consensus       920 ~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~  995 (1068)
                      ++.+....+. ..++.+.+.+....+.    . ...+++..+++||+|++||.-..+|.+.+.+.+-.+..+.+...
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~  257 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD  257 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence            4555554444 4445566444332211    1 12468999999999999999999999999988877777777633

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.78  E-value=0.0075  Score=66.38  Aligned_cols=254  Identities=13%  Similarity=0.121  Sum_probs=134.6

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCccee------ee------------eeeeeeccccc------cceeeee
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL  367 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~  367 (1068)
                      .|+.+.|+++..- ||+|...|.|.||.+...+.-.      ..            .-.+-|+....      ...+..+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5889999999764 5888899999999885432221      00            11233443211      2234445


Q ss_pred             ecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccceEEEcc------ccccEEEEEEc-----CCC-CcEEEE
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFS-----APC-KQISVI  435 (1068)
Q Consensus       368 l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~------h~~~v~~l~~s-----~d~-~~~~l~  435 (1068)
                      +....++|++++.| |=.++|+|+.+|.+.|.|+.....+.. ..+..      ....|+++.|+     .|+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            66678999999998 667999999999999999977654432 12222      23468888886     222 224788


Q ss_pred             EEeCCCcEEEEECC--C-Ccee----eEeccCCCcEEEEeeeecCCc-------------------cEEEEEEcCCcEEE
Q 001490          436 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA  489 (1068)
Q Consensus       436 s~~~d~~i~iwd~~--~-~~~~----~~~~~h~~~v~~i~~~~~~~~-------------------~~l~s~s~dg~i~v  489 (1068)
                      .|...|.+.+|.+.  . +.-.    .....+.++|..+..-...+|                   .-++....+..+|+
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999764  1 2211    122246677777763321111                   22455566788999


Q ss_pred             EeCCCCCceEEecCCCCcEEEEEEc-----cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccc-ccCCeEEEEEe
Q 001490          490 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD  563 (1068)
Q Consensus       490 wd~~~~~~~~~~~~~~~~i~~~~~s-----~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~  563 (1068)
                      +...+.+..............+++-     ..+..|++...    ++.++++.+..-+.+..+.-... ....+....++
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            9888777665554332344445553     24555666554    66799999988777766665320 11234445566


Q ss_pred             cCCCEEEEE
Q 001490          564 TAKDQILAA  572 (1068)
Q Consensus       564 ~~~~~l~~~  572 (1068)
                      ++|+.++-.
T Consensus       316 ~~Gdi~~~~  324 (395)
T PF08596_consen  316 RNGDIFYWT  324 (395)
T ss_dssp             TTS-EEEE-
T ss_pred             CCCCEEEEe
Confidence            666654444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.73  E-value=0.0017  Score=75.39  Aligned_cols=187  Identities=10%  Similarity=0.087  Sum_probs=107.1

Q ss_pred             CCeeEEEEecCCCEEEEEe-------CC--eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECC--------
Q 001490          779 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------  841 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------  841 (1068)
                      ..+...++||||+.+|...       +.  .+.+++.. +.. +.+.. ....+.-.|+| +|+.|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            4678899999999988765       33  35555542 222 33322 22488899999 77777666432        


Q ss_pred             ----CeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEE---EECCCCceeeeeeeecCCCcccCCCC
Q 001490          842 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS  914 (1068)
Q Consensus       842 ----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  914 (1068)
                          +.+.+.++..++...   ...+.|..+.|||||+.++... ++.|.+   -....++...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                234444554444322   2345799999999999998876 467777   444444411111111111111   23


Q ss_pred             ceEEEEeeCCCEEEEEeCCeEEEEECC-CceeeeeeccC--CCcCEEEEEEecCCCEEEEEECCCcEE
Q 001490          915 ETHIQFHKDQTRFLLVHETHLAIYEAE-ELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS  979 (1068)
Q Consensus       915 v~~~~~spdg~~la~~~d~~i~vwd~~-~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~  979 (1068)
                      +.++.|..++.+++...++...+|.+. .|..... ..+  ...++.+++-+++  .|+.+..+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            578999999997655444433344433 2332222 122  2567777777763  455556666443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.15  Score=56.80  Aligned_cols=251  Identities=14%  Similarity=0.130  Sum_probs=162.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCc-EEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001490          374 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  452 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~~~d~-~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  452 (1068)
                      ....+...|++..+....... .+..-+.... ....  ....-...-..++.++++.. ..++...++.|.+.|..+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccc-eeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence            556678888886665553222 3444444411 1111  11111133457888889886 45555567899999988877


Q ss_pred             eeeEeccCCCcEEEEeeeecCCccEEEEEEc---CCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC
Q 001490          453 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  529 (1068)
Q Consensus       453 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~  529 (1068)
                      .......-. ....+++.+  +++.+..+..   ++++.+.|-.+............+ ..++++|+|..++....   .
T Consensus       108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~  180 (381)
T COG3391         108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D  180 (381)
T ss_pred             eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence            776654222 445566655  5555555544   688888888887777664433334 88999999998887762   3


Q ss_pred             ceeEEEEeCCCCeeeeEEec--cccccCCeEEEEEecCCCEEEEEECC---CeEEEEEcCCCeEEEEEeCCCCCCCCceE
Q 001490          530 ESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI  604 (1068)
Q Consensus       530 ~~~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v  604 (1068)
                      ++.|.+.|..+....+ -..  ..........+.+++++++++.....   +.+...|..++.........+.. ....+
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence            6789999977665553 110  01111345678899999988775433   69999999988877763222222 35678


Q ss_pred             EEecCCCEEEEEECC-CeEEEEECCCCceeeecc
Q 001490          605 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG  637 (1068)
Q Consensus       605 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~  637 (1068)
                      .++|+|..+.+.... +.+.+.|..+........
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            999999999888554 888898888776655443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.57  E-value=0.018  Score=57.11  Aligned_cols=233  Identities=15%  Similarity=0.110  Sum_probs=138.0

Q ss_pred             EEEEecCCC-EEEEEe-CCe-EEEEEccCceeEEEecCCCCC--eEEEEEeCCCCCEEEEEECC-----CeEEEEEcCCc
Q 001490          783 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS  852 (1068)
Q Consensus       783 ~l~~s~dg~-~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~  852 (1068)
                      .++|+|.-. -++.+. -|+ ..++|..+.+.+.++....+.  --.=.||| ||.+|...-.|     |.|-|||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence            577888653 445555 355 789999988877665433321  22346999 89998865443     68999999864


Q ss_pred             -eeeeeecccccCeEEEEEcCCCCEEEEEeCC------------------CcEEEEECCCCceeeeeeeecCCCcccCCC
Q 001490          853 -EVISKLEGHSKRVTGLVFSDALNILVSSGGD------------------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  913 (1068)
Q Consensus       853 -~~~~~~~~h~~~V~~l~~spdg~~l~s~s~d------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  913 (1068)
                       +.+..+..|.-....+.+.+||+.|+.+...                  -.+.+.|-.+++......+.....+    .
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l  226 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L  226 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence             5667788887777889999999999976431                  1133333333332222222211122    3


Q ss_pred             CceEEEEeeCCCEEEEE-e-----CCeEEEEECCCceeeeeec------cCCCcCEEEEEEecCCCEEEEEE-CCCcEEE
Q 001490          914 SETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF------PISSVPISQATFSCDCRMVFTSF-VDGTLSI  980 (1068)
Q Consensus       914 ~v~~~~~spdg~~la~~-~-----d~~i~vwd~~~~~~~~~~~------~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~v  980 (1068)
                      .+..++.-+||+.++.+ .     |--..|=-...|+.+.-+.      ..-...|-+++...+..+++..+ .-++..+
T Consensus       227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi  306 (366)
T COG3490         227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI  306 (366)
T ss_pred             ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence            58899999999987763 1     1111111111222221110      01144667778776555555444 4556889


Q ss_pred             EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001490          981 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1035 (1068)
Q Consensus       981 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~ 1035 (1068)
                      ||..+|.++....    ++.        ...++..   ..-|++.+.+|.++++.
T Consensus       307 ~da~tG~vv~~a~----l~d--------aaGva~~---~~gf~vssg~G~~~~~s  346 (366)
T COG3490         307 WDAATGAVVSEAA----LPD--------AAGVAAA---KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEcCCCcEEeccc----ccc--------cccceec---cCceEEecCCceEEecc
Confidence            9999999884433    111        1123322   35678888889988874

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.53  E-value=0.062  Score=57.20  Aligned_cols=235  Identities=10%  Similarity=0.108  Sum_probs=133.2

Q ss_pred             cCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001490          720 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG  799 (1068)
Q Consensus       720 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg  799 (1068)
                      ..++.|+.|+.+| +.++++....                     .....      .+...|..+...++-+.+++-+|+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~---------------------~~~~i------~~~~~I~ql~vl~~~~~llvLsd~   56 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS---------------------KPTRI------LKLSSITQLSVLPELNLLLVLSDG   56 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc---------------------cceeE------eecceEEEEEEecccCEEEEEcCC
Confidence            4567788898888 7887762110                     00111      033448999999999999999999


Q ss_pred             eEEEEEccCceeEEEe--------------cCCCCCeEEEE--EeCCCCCEEEEEECCCeEEEEEcCCc-----eeeeee
Q 001490          800 VISLYIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKL  858 (1068)
Q Consensus       800 ~i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~~  858 (1068)
                      .+.++++.........              ......+...+  -...+...|+++. ..+|.+|.....     +..+.+
T Consensus        57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~  135 (275)
T PF00780_consen   57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI  135 (275)
T ss_pred             ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence            9999998765544311              11222344444  1222445555554 458888887653     344454


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCC----CcccCCCCceEEEEeeCCCEEEEEeCCe
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETH  934 (1068)
Q Consensus       859 ~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~spdg~~la~~~d~~  934 (1068)
                      . -.+.+.+++|.  ++.++.+..++ ..+.|+.++............    .......++..+. -+++.+|++- ++.
T Consensus       136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~~  209 (275)
T PF00780_consen  136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DNI  209 (275)
T ss_pred             E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cce
Confidence            4 44778999998  56777777666 889999976543321111110    0000001223333 3345666543 333


Q ss_pred             EEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          935 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       935 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      -...|. .|+..+.....=...+.++++.  ..||+..+. +.|.||++.+++++..+.
T Consensus       210 g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  210 GVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            333333 4443331010113355566663  358886655 569999999999987766

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.056  Score=60.55  Aligned_cols=195  Identities=12%  Similarity=0.103  Sum_probs=106.1

Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEccCce------eEEEecCCCCCeEEEEEeCCCCCEEEEEEC
Q 001490          767 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMD  840 (1068)
Q Consensus       767 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~  840 (1068)
                      +....+.    .+.+.++.|+.+.+++++..+|.+++||+....      .+.........+.+..+.. +|-.+  -..
T Consensus        73 l~~i~w~----~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~  145 (410)
T PF04841_consen   73 LSSIPWD----SGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTG  145 (410)
T ss_pred             eEEEEEC----CCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CCEEE--ECC
Confidence            5554442    378999999999999999999999999986322      1111111112222233433 45233  334


Q ss_pred             CCeEEEEEcCCce-eeeee---cc-----ccc-CeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcc
Q 001490          841 DSTILIYNARSSE-VISKL---EG-----HSK-RVTG-LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM  909 (1068)
Q Consensus       841 dg~v~iwd~~~~~-~~~~~---~~-----h~~-~V~~-l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~  909 (1068)
                      ++.+++.+--... ....+   ..     |.. .... ..++.+....+....++.+.+-+-...+        ....  
T Consensus       146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------~i~~--  215 (410)
T PF04841_consen  146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------QIDS--  215 (410)
T ss_pred             CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------cccC--
Confidence            5555544322211 11111   11     100 0111 2345555555555555555544333210        0111  


Q ss_pred             cCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEE
Q 001490          910 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       910 ~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd  982 (1068)
                        .+++..+++||+|+++|. ..+|.+.|.+.+-.+...+.-..-......+.|..++..++.-  ...+.+..
T Consensus       216 --~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg  285 (410)
T PF04841_consen  216 --DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG  285 (410)
T ss_pred             --CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence              136999999999999998 6778999988766666555443334566777787765444433  33455544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.51  E-value=0.081  Score=56.33  Aligned_cols=231  Identities=11%  Similarity=0.110  Sum_probs=130.5

Q ss_pred             CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe----
Q 001490          382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----  457 (1068)
Q Consensus       382 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----  457 (1068)
                      ..++.|+.|+.+| +.++++.......   .+ .+...|..+...++-+  .++.-+ |+.++++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~---~i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPT---RI-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccce---eE-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3578899999999 8999993322222   11 2333499999999887  444444 599999998754333210    


Q ss_pred             ----------ccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCC-----CceEEecCCCCcEEEEEEccCCCEEEE
Q 001490          458 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS  522 (1068)
Q Consensus       458 ----------~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~  522 (1068)
                                ......+...+......+...+.......|.+|.+...     .....+.. ...+..++|.  ++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence                      11223344444112223334444555558888887653     22233333 3577888888  566666


Q ss_pred             EeeCCCCceeEEEEeCCCCeeeeEEecccc---------ccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEE--E
Q 001490          523 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T  591 (1068)
Q Consensus       523 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~  591 (1068)
                      +..     ....+.|+.++.....+.....         ...++..+.. +++.++++-  |..-.+.|. .|+...  .
T Consensus       154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            653     2388899987766544432210         0122333333 345565543  233333343 444333  3


Q ss_pred             EeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490          592 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  638 (1068)
Q Consensus       592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1068)
                      +.-..   ....+++.  ..+++..+. +.|.||++.+++.++.+..
T Consensus       225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            33222   24556664  447776665 5699999999999888764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.49  E-value=0.022  Score=60.33  Aligned_cols=223  Identities=15%  Similarity=0.095  Sum_probs=136.8

Q ss_pred             EEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcE
Q 001490          316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  395 (1068)
Q Consensus       316 v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~  395 (1068)
                      -.|.|+...|+.+--..+.|.-|+..+|+...                    +. +-..+.++..-.++..|+++ ..+ 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~-~~g-   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIAC-EHG-   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEE-ccc-
Confidence            36778888787887778999999998775432                    11 22334555544455556555 333 


Q ss_pred             EEEEEccCCCcccceEEEc-cc-cccEEEEEEcCCCCcEEEEEEeCC------------CcEEEEECCCCceeeEeccCC
Q 001490          396 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRTYSFEGHG  461 (1068)
Q Consensus       396 i~vwd~~~~~~~~~~~~~~-~h-~~~v~~l~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~h~  461 (1068)
                      +.+++.+++.......... +. ....+.+...|+|.  +.+ +...            |.|+..|. .+..++.+..+-
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~  162 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL  162 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE
Confidence            6777876655422211111 11 23567888999998  333 3322            22444443 566666666666


Q ss_pred             CcEEEEeeeecCCccEEEEEE-cCCcEEEEeCCC-----CC--ceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeE
Q 001490          462 APVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDS-----LG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       462 ~~v~~i~~~~~~~~~~l~s~s-~dg~i~vwd~~~-----~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i  533 (1068)
                      ..-+.++|+|  |++.++.+. ..+.|..|++..     ..  .........+..-.++...+|.+-+++...   .+.|
T Consensus       163 ~~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v  237 (307)
T COG3386         163 TIPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV  237 (307)
T ss_pred             EecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence            6678899977  555665554 458888888763     11  122233344556678888888887644321   2369


Q ss_pred             EEEeCCCCeeeeEEeccccccCCeEEEEEe-cCCCEEEEEEC
Q 001490          534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  574 (1068)
Q Consensus       534 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~  574 (1068)
                      .+|+.. |+.+..+..+.   ..+.+++|. ++.+.|++.+.
T Consensus       238 ~~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         238 VRFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEec
Confidence            999988 99998888875   567777775 45566665543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.44  E-value=5.2e-05  Score=82.51  Aligned_cols=204  Identities=12%  Similarity=0.168  Sum_probs=127.6

Q ss_pred             CCCceEEEEcCCCC-eEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECC-CCCEE
Q 001490          310 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  387 (1068)
Q Consensus       310 ~~~V~~v~~spdg~-~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-dg~~l  387 (1068)
                      +..+.|++++-+.+ .++++|..+|.|.+-.+....--.                 ..+..+|....++++|++ |...|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~L  118 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNHL  118 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHHH
Confidence            34788888765443 689999999999998876432110                 112456778999999998 66777


Q ss_pred             EEEe----CCcEEEEEEccCCCcc-cceEEEcc-ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccC
Q 001490          388 GVAY----SKHIVQLYAYHGGSDA-RQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGH  460 (1068)
Q Consensus       388 as~~----~d~~i~vwd~~~~~~~-~~~~~~~~-h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h  460 (1068)
                      |+|-    .|..+.|||+.++-.. +....+.+ ......+++|..+.+  ++.+|.....+.++|++... ....+  .
T Consensus       119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--n  194 (783)
T KOG1008|consen  119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--N  194 (783)
T ss_pred             HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--h
Confidence            7772    3557999999987211 11112222 344566889998877  78888888899999986321 11111  2


Q ss_pred             CCcEEEEeeeecCCccEEEEEEcCCcEEEEe-CCCCCceEEecCC-----CCcEEEEEEccCCC-EEEEEeeCCCCceeE
Q 001490          461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVDYDAP-----GLGCTRMAYSANGR-RLFSCGTSKEGESFL  533 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~-----~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i  533 (1068)
                      +..+..+.+.|- .+.++++-. ||.|.+|| ...-+.......+     ...+..++|.|-.. .++++..+   .++|
T Consensus       195 Tk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~tI  269 (783)
T KOG1008|consen  195 TKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SITI  269 (783)
T ss_pred             hhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cceE
Confidence            223444454442 233666655 99999999 4433332222112     12488899998543 44444432   5678


Q ss_pred             EEEeCC
Q 001490          534 VEWNES  539 (1068)
Q Consensus       534 ~~wd~~  539 (1068)
                      +++|+.
T Consensus       270 rlydi~  275 (783)
T KOG1008|consen  270 RLYDIC  275 (783)
T ss_pred             EEeccc
Confidence            999875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.42  E-value=9.3e-05  Score=80.59  Aligned_cols=204  Identities=13%  Similarity=0.101  Sum_probs=129.3

Q ss_pred             cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce--EEecCCCCcEEEEEEcc-CCCEEEEEeeCCCCceeEEEEeCC
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES  539 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~  539 (1068)
                      .+.+++.....+...++.|..+|.|-+-.++.....  .....+...+++++|++ |...||+|-..-..+..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            344555444445567888888999988877654432  34455666889999988 677888776555667889999998


Q ss_pred             CC--eeee--EEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC-eEEEEEeCCCCCCCCceEEEec-CCCEE
Q 001490          540 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL  613 (1068)
Q Consensus       540 ~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l  613 (1068)
                      ++  .+..  .|.+.  ......+++|..+.+.+++|.....+.++|++.. .....+.    +..+..+..+| .+.++
T Consensus       138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence            87  2222  12221  1244568889988999999999999999998732 2222221    12356678888 67777


Q ss_pred             EEEECCCeEEEEECCCC--ceeeeccccc----cceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccce
Q 001490          614 AVIANENRIKILETPES--NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  687 (1068)
Q Consensus       614 ~~~~~dg~i~iwd~~~~--~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  687 (1068)
                      ++-. ||.|.+||..-.  .++..+....    ..+..+++.|...                    |...+..-..++|+
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr  270 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR  270 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence            7655 899999994311  2222222222    2477778877532                    33333333446788


Q ss_pred             eecccc
Q 001490          688 VEKPLF  693 (1068)
Q Consensus       688 ~wd~~~  693 (1068)
                      ++++..
T Consensus       271 lydi~~  276 (783)
T KOG1008|consen  271 LYDICV  276 (783)
T ss_pred             Eecccc
Confidence            888653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.054  Score=57.34  Aligned_cols=196  Identities=14%  Similarity=0.081  Sum_probs=114.1

Q ss_pred             EEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec---
Q 001490          785 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---  859 (1068)
Q Consensus       785 ~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~---  859 (1068)
                      .|.++...|....  .+.|.-|+..+++.. .+..+ ..+.++..-. .+..|+++. . -+++++.+++..+..+.   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d-~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALID-AGGRLIACE-H-GVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeec-CCCeEEEEc-c-ccEEEeccCCceeEEecccc
Confidence            4667777666665  688999998866432 33322 2334444333 333444332 2 36777776655422221   


Q ss_pred             -c-cccCeEEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCceeeeeeeecCCCcccCCCCceEEEEeeCCCEE
Q 001490          860 -G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  927 (1068)
Q Consensus       860 -~-h~~~V~~l~~spdg~~l~s~s~-----d----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  927 (1068)
                       + -....+.+...|+|.+.++...     .    ..=.+|.+. .+.     .......+..   .-..++|||||+.|
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~tl  177 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKTL  177 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCEE
Confidence             1 1134567888999988886544     0    112345544 222     1222222111   24679999999877


Q ss_pred             EEE--eCCeEEEEECCC--cee----eeeeccCCCcCEEEEEEecCCCEEEEEECCC-cEEEEEcCCCcEEEEecc
Q 001490          928 LLV--HETHLAIYEAEE--LTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILS  994 (1068)
Q Consensus       928 a~~--~d~~i~vwd~~~--~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-~v~vwd~~~~~~~~~~~~  994 (1068)
                      ..+  ..+.|.-|++..  +..    .........+....++...+|.+.+++..+| .|.+|+.. |+++..+..
T Consensus       178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            774  457788887752  221    1122223456777888889998886555554 89999999 999988873

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.38  E-value=0.0093  Score=70.21  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECC
Q 001490          555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      ....|++-+.+| +|++|+.+|.||+||.-..+....++  +-..+|..|..+.||+++++.+. ..+.+++..
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp--~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP--GLGDPIIGIDVTADGKWILATCK-TYLLLIDTL  647 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC--CCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence            457777777666 89999999999999954333223333  32357999999999999987766 567777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.36  E-value=0.01  Score=69.83  Aligned_cols=147  Identities=12%  Similarity=0.123  Sum_probs=102.6

Q ss_pred             CCCEEEEE-ECCCeEEEEEcCCceeeeeecccccC-eEEEEEcCCC-------CEEEEEeCCCcEEEEECCCCceeeeee
Q 001490          831 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDAL-------NILVSSGGDAQIFVWDVDGWGIQTCRS  901 (1068)
Q Consensus       831 d~~~lasg-~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg-------~~l~s~s~dg~i~iwd~~~~~~~~~~~  901 (1068)
                      +.++|+.. .....|+-.|+..|+.+..+..|... |..  |.|+.       ..-+.|-.+..+..||..-..   ..+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~  566 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL  566 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence            44555443 34578999999999999999987754 544  44432       233456667779999987532   112


Q ss_pred             eecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEE
Q 001490          902 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH  981 (1068)
Q Consensus       902 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vw  981 (1068)
                      +.............+|++-+.+|...+.+.+|.|++||- .|......+++-..+|..|..+.||++|++.+ +..+.++
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi  644 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI  644 (794)
T ss_pred             eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence            221111112224578999999998877789999999994 45555566667789999999999999998664 6678888


Q ss_pred             EcC
Q 001490          982 EAS  984 (1068)
Q Consensus       982 d~~  984 (1068)
                      ++.
T Consensus       645 ~t~  647 (794)
T PF08553_consen  645 DTL  647 (794)
T ss_pred             EEe
Confidence            864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.29  E-value=0.75  Score=55.44  Aligned_cols=206  Identities=13%  Similarity=0.140  Sum_probs=119.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCCc--------EEEEeeee--------------cCCccEEEEEEcCCcEEEE
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW  490 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~--------------~~~~~~l~s~s~dg~i~vw  490 (1068)
                      .++.++.++.|.-.|..+|+.+.++......        .+.+++..              ...+..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            4666677788888888888888776432211        11222221              1133478888999999999


Q ss_pred             eCCCCCceEEecCCCC------------cEEEEEEcc--CCCEEEEEeeCCC------CceeEEEEeCCCCeeeeEEecc
Q 001490          491 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL  550 (1068)
Q Consensus       491 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~  550 (1068)
                      |.++++....+.....            ....+.-+|  .+..+++++...+      ..+.|+-+|..+|+.+-.+...
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9999888765532211            000111122  2334555543222      2578999999999988776531


Q ss_pred             ccc------c--------CCe-EEEEEecCCCEEEEEE------------------CCCeEEEEEcCCCeEEEEEeCCCC
Q 001490          551 QLQ------H--------NSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG  597 (1068)
Q Consensus       551 ~~~------~--------~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~  597 (1068)
                      ...      .        ..+ ...+++++...++.+.                  ..+.|.-.|.++|+..-.++...+
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            100      0        011 2344555544544422                  235567778888888776654211


Q ss_pred             C-------CCCceEEEec-CCC---EEEEEECCCeEEEEECCCCceeeeccc
Q 001490          598 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV  638 (1068)
Q Consensus       598 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1068)
                      .       ....-+.+.. +|+   .++.++.+|.+.++|.++++.+...+.
T Consensus       436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            0       0111122333 553   788999999999999999988765543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.22  E-value=0.11  Score=54.02  Aligned_cols=202  Identities=18%  Similarity=0.168  Sum_probs=113.7

Q ss_pred             CeEEEEEeCCCCCEEEEEE-CC--CeEEEEEcCCceeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCc
Q 001490          821 TATSLAFNPHDNNVIAIGM-DD--STILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG  895 (1068)
Q Consensus       821 ~i~~l~~s~~d~~~lasg~-~d--g~v~iwd~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd-~~~~~  895 (1068)
                      .+.+.++|+ +++.+|... .+  ..++++..  +..... +.+.  .+....|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999 777666555 23  35555543  332222 2333  688889999988877777677677774 23322


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe----CCeEEEEECC---Cc--eee---eeeccCCCcCEEEEEEe
Q 001490          896 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS  963 (1068)
Q Consensus       896 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~l~fs  963 (1068)
                      ... ..+..... .   ..|..+.+||||.++|...    ++.|.|--+.   .+  ..+   ..........++.+.|.
T Consensus       100 ~~~-~~v~~~~~-~---~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 GEP-VEVDWPGL-R---GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             cee-EEeccccc-C---CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            111 11111111 0   1599999999999999832    5677776543   33  111   11111235688999999


Q ss_pred             cCCCEEEEEECCCc-EEE-EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCC
Q 001490          964 CDCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1041 (1068)
Q Consensus       964 ~dg~~l~t~~~dg~-v~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~ 1041 (1068)
                      +++.+++.+...+. +.. .....+... .+      +.  .......++++-++   .. +.+.+++.+.-   ...+.
T Consensus       175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~--~~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~  238 (253)
T PF10647_consen  175 DDSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PS--VNLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGA  238 (253)
T ss_pred             CCCEEEEEeCCCCCceeEEEEccCCccc-cc------CC--CCCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCC
Confidence            99988776655443 333 333322211 11      11  12223444555444   33 44555555442   56677


Q ss_pred             CCccCCC
Q 001490         1042 TWAVLPP 1048 (1068)
Q Consensus      1042 ~~~~~~~ 1048 (1068)
                      .|...+.
T Consensus       239 ~W~~v~~  245 (253)
T PF10647_consen  239 SWREVPG  245 (253)
T ss_pred             cceEccC
Confidence            7887765

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=97.22  E-value=0.55  Score=56.61  Aligned_cols=246  Identities=8%  Similarity=0.025  Sum_probs=124.7

Q ss_pred             cceEEEEECCCCCEEEEEeCC-----cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCC-----Cc
Q 001490          373 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT  442 (1068)
Q Consensus       373 ~~V~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d-----~~  442 (1068)
                      -.+..+.|||||++||.+...     ..|++-|+.+|+.+..  .+.+ .  -..++|++|++. ++++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence            356778999999999987332     3699999998864321  1222 1  145999999986 33333222     36


Q ss_pred             EEEEECCCC--ceeeEeccCCCcEEEEeeeecCCccEEEEEEc---CCcEEEEeCCC--CCceEEecCCCCcEEEEEEcc
Q 001490          443 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA  515 (1068)
Q Consensus       443 i~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~---dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~  515 (1068)
                      |+.+++.++  +....+........ +......++++++..+.   ++.+.+++...  ......+.........+.  .
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~  277 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H  277 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence            888899888  33344443333333 33223436666555443   34688888532  222222222222222222  2


Q ss_pred             CCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEeC
Q 001490          516 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDA  594 (1068)
Q Consensus       516 d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~  594 (1068)
                      .+..+...+..+.....|...++........+..+. ....+..+.+. .+..+++...+|.-+++-+.. +..+..+..
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~  355 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAF  355 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence            234444433323334456666665222222333331 12367777776 334555566677655554432 233444432


Q ss_pred             CCCCCCCceEEEe--cCCC-EEEEEEC---CCeEEEEECCCC
Q 001490          595 GGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES  630 (1068)
Q Consensus       595 ~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~  630 (1068)
                      ... ..+..+.++  +++. ++++.++   -+.+..+|..++
T Consensus       356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            111 112222334  3333 4433333   467888887765

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.21  E-value=0.14  Score=56.16  Aligned_cols=83  Identities=8%  Similarity=0.056  Sum_probs=57.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEccCceeEEEecCCCCCeEE-EEEeCCC----------------CC-EEEE
Q 001490          777 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI  837 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las  837 (1068)
                      ....+.+++.+|++++.|+.++ |.|.++|+.++..++..++..+.-.. +......                .. +++.
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4556889999999998888764 99999999999888887765542211 1111101                11 3334


Q ss_pred             EECCCeEEEEEcCCceeeeeec
Q 001490          838 GMDDSTILIYNARSSEVISKLE  859 (1068)
Q Consensus       838 g~~dg~v~iwd~~~~~~~~~~~  859 (1068)
                      +-.-|.|.||.++.|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            5678899999999888766554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.18  E-value=0.097  Score=57.49  Aligned_cols=82  Identities=11%  Similarity=0.236  Sum_probs=57.7

Q ss_pred             cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCC-----------------CEE
Q 001490          507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQI  569 (1068)
Q Consensus       507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l  569 (1068)
                      .+.+++.+|++++.++.    |.-|+|.++|+.++..++.++|..  ...+.-+.....+                 .+|
T Consensus       309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L  382 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL  382 (415)
T ss_pred             eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEEE
Confidence            57789999998877764    236789999999999999988866  2222222221111                 122


Q ss_pred             -EEEECCCeEEEEEcCCCeEEEEEeC
Q 001490          570 -LAAGDDHVIKIWDMNKVQLLTTIDA  594 (1068)
Q Consensus       570 -~~~s~dg~i~iwd~~~~~~~~~~~~  594 (1068)
                       +-+-..|.|.||.+++|..+..+..
T Consensus       383 vIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  383 VIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEeccCCeEEEEecCCCCEEEEEEe
Confidence             3367889999999999988877764

>PRK10115 protease 2; Provisional

Probab=97.18  E-value=0.72  Score=55.64  Aligned_cols=244  Identities=10%  Similarity=0.024  Sum_probs=123.7

Q ss_pred             CceEEEEcCCCCeEEEEEcCcC----cEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~l  387 (1068)
                      .+..+.+||||++|+.+.+.+|    ++++-|+.+|+.+.. .                 +.+   .-..++|++|++.|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence            5777899999996655544444    488999988874422 0                 111   11469999999988


Q ss_pred             EEEeCC------cEEEEEEccCCCcccceEEEccccccEE-EEEEcCCCCcEEEEEEe-CCCcEEEEECC--CCceeeEe
Q 001490          388 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF  457 (1068)
Q Consensus       388 as~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~-~l~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~  457 (1068)
                      +....+      ..|+.+++.++..-.. ..+.+...... .+..+.|++++++.+.+ .++.+.+++..  ++.....+
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            776542      3688888888732111 12333233333 33445588853322222 34578888843  34422222


Q ss_pred             ccCCCcEEEEeeeecCCccEEEEEEc-CCc--EEEEeCCC-CCceEEecC-CCCcEEEEEEccCCCEEEEEeeCCCCcee
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF  532 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~s~-dg~--i~vwd~~~-~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~  532 (1068)
                      ....+....+. +.  ++.+++.... ...  |...++.. ..-...+.. ....+..+.++  ++.|+.... ..+...
T Consensus       266 ~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~  339 (686)
T PRK10115        266 PRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTS  339 (686)
T ss_pred             ECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEE
Confidence            22222222222 21  2223333222 223  43344442 222223333 23367777776  345554443 234666


Q ss_pred             EEEEeCCCCeeeeEEe-ccccccCCeEEEEEe--cCCC-EEEEEE---CCCeEEEEEcCCCe
Q 001490          533 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ  587 (1068)
Q Consensus       533 i~~wd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~  587 (1068)
                      +++++..++. +..+. ...   ..+..+.++  +++. .+++.+   .-+.++.+|+.+++
T Consensus       340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            8888865443 33332 111   123333344  3434 333332   45778889988765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.05  E-value=0.55  Score=49.49  Aligned_cols=157  Identities=11%  Similarity=0.042  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001490          817 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI  896 (1068)
Q Consensus       817 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~  896 (1068)
                      ...+.+..+..++ ||++++++..-....-||--...-...-..-...|.+|.|+||+.+.+.+ ..|.|+.=+......
T Consensus       142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            4456788899998 89999887655555567654221222222345789999999998776644 888888777222111


Q ss_pred             eeeee-eecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeecc--CCCcCEEEEEEecCCCEEEEEE
Q 001490          897 QTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSF  973 (1068)
Q Consensus       897 ~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~~  973 (1068)
                      .-... .......    -.+..++|.+++...|++..+.+ +...+.|+.-..-..  .-......+.|..+.+-++ .+
T Consensus       220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG  293 (302)
T PF14870_consen  220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LG  293 (302)
T ss_dssp             EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-
T ss_pred             ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-EC
Confidence            11111 1111111    13789999999999998888855 445556654443222  2256788999987766565 44


Q ss_pred             CCCcEEEE
Q 001490          974 VDGTLSIH  981 (1068)
Q Consensus       974 ~dg~v~vw  981 (1068)
                      .+|.+.=|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            78877544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.05  E-value=0.026  Score=61.50  Aligned_cols=211  Identities=12%  Similarity=0.136  Sum_probs=115.7

Q ss_pred             cccCCCCCCceeeecCCCCCCCCCeeEE---EEecC----CCEEEEEe----------C-CeEEEEEccCc----eeEEE
Q 001490          757 RLYQPRHGPQFMVNDTTDSNSQEAVPCF---ALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILT  814 (1068)
Q Consensus       757 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l---~~s~d----g~~l~~~~----------d-g~i~iwd~~~~----~~~~~  814 (1068)
                      ++.|+.+...+....+..   ...+.++   .|..+    ..++++|.          . |.|.++++...    ..+..
T Consensus         5 ~l~d~~~~~~~~~~~l~~---~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    5 RLVDPTTFEVLDSFELEP---NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEETTTSSEEEEEEEET---TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEeCCCCeEEEEEECCC---CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            344455555455555543   3334443   34332    57888774          1 77999999884    12222


Q ss_pred             e--cCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce-eeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          815 I--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       815 ~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~~~~-h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      +  ....++|++++--  +++ |+++. .+.|++|++...+ ....-.- ....+.++...  +.+++.|.....+.++.
T Consensus        82 i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~  155 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR  155 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence            1  2346788888876  344 44444 5789999998877 3332221 22245555554  66999998888888886


Q ss_pred             CCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCC-------ce-eeeeeccCC-CcCEEEE
Q 001490          891 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA  960 (1068)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~l  960 (1068)
                      ++.... ....+......    ..++++.|-+|++.+++ -.+|.+.++....       +. .+.....-| ...|+++
T Consensus       156 ~~~~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~  230 (321)
T PF03178_consen  156 YDEENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF  230 (321)
T ss_dssp             EETTTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred             EEccCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence            654221 11122211111    25888999877765555 4678899888762       21 222111112 5677777


Q ss_pred             ---EEec--CCC------EEEEEECCCcEEEE
Q 001490          961 ---TFSC--DCR------MVFTSFVDGTLSIH  981 (1068)
Q Consensus       961 ---~fs~--dg~------~l~t~~~dg~v~vw  981 (1068)
                         .+.|  .+.      .++.++.+|.|.+.
T Consensus       231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence               4445  222      47778899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.04  E-value=0.076  Score=57.90  Aligned_cols=180  Identities=14%  Similarity=0.173  Sum_probs=107.8

Q ss_pred             eEEEEEcCCceeeeeeccc-ccCeEE---EEEcCC----CCEEEEEeC----------CCcEEEEECCCCce--eeeeee
Q 001490          843 TILIYNARSSEVISKLEGH-SKRVTG---LVFSDA----LNILVSSGG----------DAQIFVWDVDGWGI--QTCRSL  902 (1068)
Q Consensus       843 ~v~iwd~~~~~~~~~~~~h-~~~V~~---l~~spd----g~~l~s~s~----------dg~i~iwd~~~~~~--~~~~~~  902 (1068)
                      .|++.|..+.+.+..+.-. ...+.+   +.|..+    ..+++.|..          .|.|.++++.....  .....+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888877766555421 223444   344432    467776643          28899999998410  111111


Q ss_pred             ecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCce-eeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEE
Q 001490          903 QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH  981 (1068)
Q Consensus       903 ~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vw  981 (1068)
                      ....    ..++|.+++--  +.+|+++..+.|.+|++...+ ....-.......+.++...  +.+++.|..-..+.++
T Consensus        83 ~~~~----~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   83 HSTE----VKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEE----ESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             EEEe----ecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence            1111    11357777655  445888888999999998877 4443222223456665554  5589999988888888


Q ss_pred             EcCC-CcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 001490          982 EASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1039 (1068)
Q Consensus       982 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~ 1039 (1068)
                      .+.. ...+..+.        ....+.+++++.|-+++ +.+++++.+|.|+++..+..
T Consensus       155 ~~~~~~~~l~~va--------~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  155 RYDEENNKLILVA--------RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             EEETTTE-EEEEE--------EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS
T ss_pred             EEEccCCEEEEEE--------ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCC
Confidence            6654 22222222        01234567788888744 69999999999999999754

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0027  Score=69.84  Aligned_cols=93  Identities=22%  Similarity=0.430  Sum_probs=71.9

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceE-EEEECCCCCEEEEE
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA  390 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~spdg~~las~  390 (1068)
                      .|..+.|+|.-. |+|++..+|.|.+..++ -+.+       |+            +.-|+..|+ +++|.|||+.||+|
T Consensus        22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg   80 (665)
T KOG4640|consen   22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG   80 (665)
T ss_pred             ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence            788999999987 89999999999999887 3333       33            233555666 99999999999999


Q ss_pred             eCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC
Q 001490          391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA  427 (1068)
Q Consensus       391 ~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~  427 (1068)
                      -.||+|++-|++++..+...  ...-...|.++-|++
T Consensus        81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence            99999999999998765431  112345677777763

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.99  E-value=0.099  Score=54.28  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=91.8

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEE-cCCceee
Q 001490          779 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI  855 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~  855 (1068)
                      ..+...++|+||+.+|...  ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence            3688999999999888776  5544444444443333332 333788899999 687777777677677764 3333321


Q ss_pred             -eeec--ccccCeEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeeee----eeecCCCcccCCCCceEEEEeeCCC
Q 001490          856 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQTCR----SLQTPDGVMTLAPSETHIQFHKDQT  925 (1068)
Q Consensus       856 -~~~~--~h~~~V~~l~~spdg~~l~s~s---~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~spdg~  925 (1068)
                       ..+.  .-.+.|.++.+||||..+|...   .++.|.+=-+.........    .+......   ...+..++|.+++.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST  178 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence             1111  1122899999999999988766   3567777665533222111    11111111   13689999999999


Q ss_pred             EEEEE
Q 001490          926 RFLLV  930 (1068)
Q Consensus       926 ~la~~  930 (1068)
                      +++.+
T Consensus       179 L~V~~  183 (253)
T PF10647_consen  179 LVVLG  183 (253)
T ss_pred             EEEEe
Confidence            88874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.037  Score=59.82  Aligned_cols=149  Identities=9%  Similarity=0.099  Sum_probs=104.5

Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCE--E-----EEEeCCCcEEEEECCCCceeeeeeeec
Q 001490          832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQT  904 (1068)
Q Consensus       832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~--l-----~s~s~dg~i~iwd~~~~~~~~~~~~~~  904 (1068)
                      +-+|.++.....++--|+..|+.+..+.-|.+ |.-+.+.||.+.  |     +.|=.|..|.-||..-.........+.
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            33555566667889999999999999997777 888888887632  2     234457778899986432211111111


Q ss_pred             CCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcC
Q 001490          905 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       905 ~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~  984 (1068)
                      ..-  .......|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus       425 kqy--~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  425 KQY--STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             ccc--ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence            111  1112466777777887777789999999997 7777777788889999999999999998855 46677777665


Q ss_pred             C
Q 001490          985 N  985 (1068)
Q Consensus       985 ~  985 (1068)
                      -
T Consensus       501 ~  501 (644)
T KOG2395|consen  501 I  501 (644)
T ss_pred             c
Confidence            3

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.00053  Score=70.08  Aligned_cols=141  Identities=17%  Similarity=0.215  Sum_probs=93.7

Q ss_pred             ccHHHHHHHhhCCChHHHHHhhccCCCCCCcccceeEEEeeeehhhhhhcCCcchHHHHHHHHhhccccCCCCHHHHHHH
Q 001490           12 FDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKEL   91 (1068)
Q Consensus        12 ~~~~~~~~~il~G~w~~~~~~l~~~~~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~~A~~~L~~~l~p~~~~~~~~~~~l   91 (1068)
                      .++...+++|++|+...|+..++.-...-.+. ...+.|.++.|+|+||+..+++.+|+++.++.++|...-...+++..
T Consensus       154 ~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~-~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a  232 (389)
T KOG0396|consen  154 KRAYGIRDSLLAGELEPALSWCKEHKVELKKE-ESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLA  232 (389)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-cchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            35888899999999999998875443221121 22277999999999999999999999999999999987678889999


Q ss_pred             HhhhcccCccChhhhhhhcCChHHHHHHHHH--HHHhhhccCccccccccCCCcc-hhHHHHHHHhhcccchh-cccCC
Q 001490           92 AQLLTLDDIRDHELLSKYYGDALSARKNMML--ELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQHV-HCANP  166 (1068)
Q Consensus        92 ~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~--~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~Q~~-~c~~~  166 (1068)
                      ..+|.++........   .+-....|=..+.  .++.+.+-       +.   || .-+|..+|+--+..|.- .|...
T Consensus       233 ~g~laF~~~t~~sky---~~l~~~~rw~~l~~lF~s~a~~l-------~~---i~~~~~L~~~l~~GLsalKTp~c~~~  298 (389)
T KOG0396|consen  233 MGLLAFPKYTSSSKY---LNLLTADRWSVLADLFLSEALKL-------FG---IPINPALTIYLQAGLSALKTPRCLND  298 (389)
T ss_pred             HHhhcCccccCcccc---cCcccHHHHHHHHHHhhHHHHHH-------hC---CCCCcHHHHHHHhhhhhccccccccc
Confidence            999988753211111   1112233433333  23333332       11   23 22588888877777743 34433

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.94  E-value=0.48  Score=48.12  Aligned_cols=187  Identities=10%  Similarity=0.119  Sum_probs=116.6

Q ss_pred             CCeeEEEEecCCCEEEEEe-C--CeEEEEEccCceeEEEecCCCC-CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee
Q 001490          779 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  854 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  854 (1068)
                      .-...+.|..+|.++-+.+ -  ..|+.+|+.+++......-... ---.++..  ++++...--.++...+||..+-+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            3456788888888777776 2  4699999999998766553332 23455555  456666677889999999999998


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eCC
Q 001490          855 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET  933 (1068)
Q Consensus       855 ~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d~  933 (1068)
                      +.++. ..+.=+.++  .||+.|+.+.....+.++|.++-+......+... +...  ..+..+.+- +|...|=. ...
T Consensus       123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~-g~pv--~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN-GRPV--SNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET-TEE-----EEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEEC-CEEC--CCcEeEEEE-cCEEEEEeCCCC
Confidence            88876 345567777  4677777777777799999887654443333221 2111  245666665 56544433 567


Q ss_pred             eEEEEECCCceeeeeec-----c------CC---CcCEEEEEEecCCCEEEEEEC
Q 001490          934 HLAIYEAEELTCLKQWF-----P------IS---SVPISQATFSCDCRMVFTSFV  974 (1068)
Q Consensus       934 ~i~vwd~~~~~~~~~~~-----~------~h---~~~v~~l~fs~dg~~l~t~~~  974 (1068)
                      .|..-|..+|+....+-     .      .+   ..-...+++.|++..|...|.
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            78889999998876431     0      01   345788999987765555543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=96.89  E-value=0.0024  Score=43.43  Aligned_cols=39  Identities=36%  Similarity=0.622  Sum_probs=34.5

Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001490          852 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       852 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      ++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=96.87  E-value=0.08  Score=62.09  Aligned_cols=224  Identities=10%  Similarity=-0.001  Sum_probs=118.9

Q ss_pred             eEEEEEccCceeE--EEecCCCCCeEEEEEeCCCCCEEEEEECC------CeEEEEEcCCcee--eeeecccccCeEEEE
Q 001490          800 VISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLV  869 (1068)
Q Consensus       800 ~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~--~~~~~~h~~~V~~l~  869 (1068)
                      .+..||..+.+-.  ..+...... .+++. - ++.+.++|+.+      ..+..||..+.+-  +..+.........+ 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-
Confidence            4667777654322  222211111 22333 2 67788888854      3578889877642  22222111112222 


Q ss_pred             EcCCCCEEEEEeCCC-----cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe-C-----------
Q 001490          870 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------  932 (1068)
Q Consensus       870 ~spdg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-d-----------  932 (1068)
                       .-+|+..+.||.++     ++..||..+.+......+......      .  .+..-+|+..+.|+ +           
T Consensus       349 -~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~------~--~~~~~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        349 -VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSS------Y--GMCVLDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             -EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccc------c--cEEEECCEEEEEeCCCccccccccccc
Confidence             23678888888764     488899887654332222222111      1  12234677666642 2           


Q ss_pred             ------------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECC------CcEEEEEcCC-CcEEEEec
Q 001490          933 ------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRIL  993 (1068)
Q Consensus       933 ------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d------g~v~vwd~~~-~~~~~~~~  993 (1068)
                                  +.+..||..+.+.... ..-...+...-+..-+|+..+.||.+      ..+..||..+ .+..... 
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-
Confidence                        2478899887765432 11111222222334567777777754      2467888887 5544211 


Q ss_pred             cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC--cEEEEeCCCCCCCCccCCCCc
Q 001490          994 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG--EVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus       994 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg--~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
                         .++..     .....++..  ++.+.++|+.||  .+..||+.  ...|....|.-
T Consensus       498 ---~m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~--~~~W~~~~~~~  544 (557)
T PHA02713        498 ---TTESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVY--TYEWNHICHQH  544 (557)
T ss_pred             ---ccCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCcc--cccccchhhhc
Confidence               12211     112223333  579999999999  77778875  45688887754

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.0049  Score=67.87  Aligned_cols=94  Identities=17%  Similarity=0.180  Sum_probs=76.1

Q ss_pred             CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001490          819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  897 (1068)
Q Consensus       819 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~  897 (1068)
                      ...+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34678899999 89999999999999999988 778888887877787 9999999999999999999999999987643


Q ss_pred             eeeeeecCCCcccCCCCceEEEEe
Q 001490          898 TCRSLQTPDGVMTLAPSETHIQFH  921 (1068)
Q Consensus       898 ~~~~~~~~~~~~~~~~~v~~~~~s  921 (1068)
                      ......    .   ...|..+-|+
T Consensus        98 ~~~~~s----~---e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFS----V---ETDISKGIWD  114 (665)
T ss_pred             eccccc----c---ccchheeecc
Confidence            332111    1   1246677776

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.82  E-value=1  Score=48.95  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=39.8

Q ss_pred             CeEEEEEec-------CCCEEEEEECCCeEEEEEcCCCeEEE-EEeCCCCC-CCCceEEEecCCCEEEEEECCCeEE
Q 001490          556 SVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLT-TIDAGGGL-PENPRICFNKNGTLLAVIANENRIK  623 (1068)
Q Consensus       556 ~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~  623 (1068)
                      .+..+.|..       .+.++++.-..+.|....+..+..+. ....-... ..+..+++.|||.+.++...+|.|.
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            455566653       23455555556778888877554332 22211222 2578999999999888888788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.81  E-value=0.088  Score=45.13  Aligned_cols=65  Identities=12%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             eEEEEEec---C-CCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEC
Q 001490          557 VSVVHFDT---A-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  627 (1068)
Q Consensus       557 v~~~~~~~---~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  627 (1068)
                      |+++++..   + .+.|++|++|..|++|+-.  +.+..+....   .|.+++-... ..++.+..+|+|.+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD---KVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc---ceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            44555543   3 2689999999999999854  5666665443   3666766665 57888999999999874

>PRK13684 Ycf48-like protein; Provisional

Probab=96.76  E-value=1.2  Score=48.62  Aligned_cols=157  Identities=10%  Similarity=-0.008  Sum_probs=88.0

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECC
Q 001490          862 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  941 (1068)
Q Consensus       862 ~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~  941 (1068)
                      .+.+.++.+.|++.++++ +..|.+.. ....+. .....+.....     ..+..+.+.++++.++++..|.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            456889999999876655 44564432 211111 11112222111     35889999999999888877766532345


Q ss_pred             CceeeeeeccC---CCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCC
Q 001490          942 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1018 (1068)
Q Consensus       942 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1018 (1068)
                      .|..-.....+   ....+..+.|.+++..++ ++.+|.|. ...+.|+.-.........+.       ....+.|..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-------~~~~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-------NFYKIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-------ceEEEEEeC--
Confidence            55433321111   134578899999887665 45677654 45565554333221111111       123455553  


Q ss_pred             CCEEEEEeCCCcEEEEeCC
Q 001490         1019 PTQFAVGLTNGEVYVIEPN 1037 (1068)
Q Consensus      1019 ~~~l~~~~~dg~i~~w~~~ 1037 (1068)
                      ++....++..|.|..|+=.
T Consensus       313 ~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CCceEEECCCceEEEecCC
Confidence            3566778888988887653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.036  Score=59.93  Aligned_cols=144  Identities=13%  Similarity=0.131  Sum_probs=95.9

Q ss_pred             CCCEEE-EEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001490          383 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT  454 (1068)
Q Consensus       383 dg~~la-s~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l-----~s~~~d~~i~iwd~~~~-~-~~  454 (1068)
                      +..+|. ++.....++-.|++.|+.+.   ++.-|.. |+-+.+.|+.+..-+     +.|-.|..|.-||.+-. . .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            444443 44445568888999998766   4444544 777888887652111     23556888999998732 2 22


Q ss_pred             eEeccCC----CcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCc
Q 001490          455 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  530 (1068)
Q Consensus       455 ~~~~~h~----~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~  530 (1068)
                      ..-++|.    ....|.+-  .++| ++++||.+|.||+||--.......+++-+.+|..+..+.||+++++.+     +
T Consensus       420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K  491 (644)
T ss_pred             eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence            2222332    22333332  3344 899999999999999755555667788888999999999999998765     5


Q ss_pred             eeEEEEeC
Q 001490          531 SFLVEWNE  538 (1068)
Q Consensus       531 ~~i~~wd~  538 (1068)
                      ..+.+.++
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            56777664

>smart00320 WD40 WD40 repeats

Probab=96.71  E-value=0.0032  Score=42.78  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=32.3

Q ss_pred             eeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEe
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  339 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd  339 (1068)
                      ....+..|...|.+++|+|++. ++++|+.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            4566778889999999999996 779999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.68  E-value=0.74  Score=50.12  Aligned_cols=240  Identities=14%  Similarity=0.160  Sum_probs=121.9

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEccCcee---EEEe----cCCCCCeEEEEEeCC---CCCEEEEEECC--------
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD--------  841 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d--------  841 (1068)
                      ..+.|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999998877789999999 43433   2222    123457799999992   24444444422        


Q ss_pred             CeEEEEEcCCc-------ee-eeeecc---cccCeEEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCcee
Q 001490          842 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQ  897 (1068)
Q Consensus       842 g~v~iwd~~~~-------~~-~~~~~~---h~~~V~~l~~spdg~~l~s~s~dg~-------------i~iwd~~~~~~~  897 (1068)
                      ..|.-|....+       +. +..+..   ....-..|+|.|||.+.++.+..+.             |.-.+... ...
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence            23444444332       11 112222   2233566999999988887765443             21122111 100


Q ss_pred             eeeeee--------c-CCCcccCCCCceEEEEeeC-CCEEEE--EeCCeEEEEECCCcee----------------e---
Q 001490          898 TCRSLQ--------T-PDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L---  946 (1068)
Q Consensus       898 ~~~~~~--------~-~~~~~~~~~~v~~~~~spd-g~~la~--~~d~~i~vwd~~~~~~----------------~---  946 (1068)
                      ......        . -.|+    .....++|.|. |++.++  +.++.=.|.-+..|.-                .   
T Consensus       161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred             CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence            000000        0 0001    12467999999 887776  4443322222222210                0   


Q ss_pred             --------eeeccCCCcCEEEEEEec-------CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceE
Q 001490          947 --------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1011 (1068)
Q Consensus       947 --------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1068)
                              ..+.-.+...+..+.|-.       +|.++++.-..+.|....+..+..+......  .    .....++..
T Consensus       237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~----~~~~~r~~~  310 (331)
T PF07995_consen  237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEF--L----GGFGGRPRD  310 (331)
T ss_dssp             SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEE--C----TTSSS-EEE
T ss_pred             cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEc--c----ccCCCCceE
Confidence                    000111345667777763       4556666655667888888755433322211  1    122235778


Q ss_pred             EEECCCCCCEEEEEeCCCcEE
Q 001490         1012 IAAHPLKPTQFAVGLTNGEVY 1032 (1068)
Q Consensus      1012 ~~~~p~~~~~l~~~~~dg~i~ 1032 (1068)
                      +++.| ||.++++-+.+|.|+
T Consensus       311 v~~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  311 VAQGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEET-TSEEEEEE-TTTTEE
T ss_pred             EEEcC-CCeEEEEECCCCeEe
Confidence            99999 788888888898875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.48  E-value=0.12  Score=44.22  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=65.5

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEEC
Q 001490          865 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  940 (1068)
Q Consensus       865 V~~l~~sp---dg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~  940 (1068)
                      |++|++..   || +.|+.|+.|..|++|+=+.       .+......    ..|+.++-...+++..+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            67777765   32 6799999999999998664       22222221    2588888888877766678999999985


Q ss_pred             CCceeeeeeccCCCcCEEEEEEec---CC-CEEEEEECCCcEE
Q 001490          941 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLS  979 (1068)
Q Consensus       941 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~dg~v~  979 (1068)
                      ..    +.|.......+.++++..   || .-|++|-.+|.|-
T Consensus        71 ~~----RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 SQ----RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cc----eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            32    223322334466666543   33 3588888888764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.47  E-value=1.5  Score=46.29  Aligned_cols=230  Identities=11%  Similarity=0.058  Sum_probs=113.1

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEec---CCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCC-cee-
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV-  854 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~-  854 (1068)
                      ...++.|..+ ..++++..+ +.+...+.|+.-..+.   ...+....+.... ++..++ .+..|.  ||...+ |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~--iy~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGA--IYRTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT----EEEESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCc--EEEeCCCCCCe
Confidence            4567777654 445555544 3344444444333322   1223333444333 343444 344554  343333 322 


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCe
Q 001490          855 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH  934 (1068)
Q Consensus       855 ~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~  934 (1068)
                      ......-.+.+..+.-++||+++++++.-....-||-....   .........     .+|..+.|+|++.+.+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence            12223345678889999999999988766666678765422   112222211     3699999999999988887788


Q ss_pred             EEEEE-CCCceeeeee-cc--CCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccce
Q 001490          935 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1010 (1068)
Q Consensus       935 i~vwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1068)
                      ++.=+ ...++..... ..  .....+..++|.+++...++|+ .|.+ +...+.|+.=.+.......+..       ..
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n-------~~  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSN-------LY  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS----------
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCc-------eE
Confidence            88777 3333332221 11  1234588999999988877664 5544 5677778766555533333333       33


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEE
Q 001490         1011 AIAAHPLKPTQFAVGLTNGEVYVI 1034 (1068)
Q Consensus      1011 ~~~~~p~~~~~l~~~~~dg~i~~w 1034 (1068)
                      .+.|.+  .+.-.+.+.+|.|.-|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            566654  3566677778877655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.45  E-value=2  Score=47.56  Aligned_cols=288  Identities=14%  Similarity=0.109  Sum_probs=154.4

Q ss_pred             CCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001490          721 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS  795 (1068)
Q Consensus       721 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~l~~  795 (1068)
                      +...|++|+..|.++||+-........                 ..+...+     -..+|..++.-+     +...||+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV   93 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV   93 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence            345788899999999997533221111                 1122222     244555555432     4456777


Q ss_pred             EeCCeEEEEEccC--ce-------eEEEecCCC--CCeEEEEEeCC----CCCEEEEEECCCeEEEEEcCCceeeeeecc
Q 001490          796 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG  860 (1068)
Q Consensus       796 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~~~~  860 (1068)
                      -.-..+.||.+..  |.       .+..+..|.  .....++.-|-    +..+|++=+.||.+.+|+-+.-.....+.+
T Consensus        94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~  173 (418)
T PF14727_consen   94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD  173 (418)
T ss_pred             ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence            6778888887731  11       112222222  12233333322    246888999999999999776554444443


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee---------------------eeeeecCCCcccCCCCceEEE
Q 001490          861 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT---------------------CRSLQTPDGVMTLAPSETHIQ  919 (1068)
Q Consensus       861 h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~v~~~~  919 (1068)
                       .--...++|++.-..+++++.+..+.-|....-....                     ...+..-+..    -.+..+.
T Consensus       174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~  248 (418)
T PF14727_consen  174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVR  248 (418)
T ss_pred             -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEE
Confidence             2223347888888899999999888888763210000                     0001111100    0133344


Q ss_pred             EeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEE-EEec----CCC---EEEEEECCCcEEEEEcCCCcEEEE
Q 001490          920 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR  991 (1068)
Q Consensus       920 ~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg~---~l~t~~~dg~v~vwd~~~~~~~~~  991 (1068)
                      ++.....+++-.+.++.+.+. +|.......-  .....++ .|..    ++.   .++.++.++++.||.=.+....+.
T Consensus       249 ~~~~~~~IvvLger~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~  325 (418)
T PF14727_consen  249 FSSSESDIVVLGERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ  325 (418)
T ss_pred             cCCCCceEEEEecceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence            444455566666677777776 3544332111  1122222 2221    322   477788999999987555444433


Q ss_pred             eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490          992 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus       992 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
                      +.          ..++. +.++.-++-...+++-+.+|.|.+-=+ -.+|..-..||.+
T Consensus       326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YL-GTdPs~~~~p~~~  372 (418)
T PF14727_consen  326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYL-GTDPSLFQVPPLE  372 (418)
T ss_pred             CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEe-CCCCccccCCCcc
Confidence            32          11222 223332223688999999999987555 4455444444433

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.061  Score=63.34  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  462 (1068)
Q Consensus       383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  462 (1068)
                      .+..+|.|+..|.+-..|+.+.  ++....-..-.++|++++|+.||+  .++.|-.+|.|.+||+..++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            3567888988999999888764  221111123457999999999999  888999999999999999999999988888


Q ss_pred             cEEEEeeee-cCCccEEEEEEcCCcEEEEeC
Q 001490          463 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY  492 (1068)
Q Consensus       463 ~v~~i~~~~-~~~~~~l~s~s~dg~i~vwd~  492 (1068)
                      +...+-+.. .+++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            888776543 334446777777776  4543

>PHA02713 hypothetical protein; Provisional

Probab=96.30  E-value=0.19  Score=58.92  Aligned_cols=201  Identities=7%  Similarity=-0.039  Sum_probs=98.9

Q ss_pred             CCCcEEEEEEeCC------CcEEEEECCCCcee--eEeccCCCcEEEEeeeecCCccEEEEEEcCC-----cEEEEeCCC
Q 001490          428 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS  494 (1068)
Q Consensus       428 d~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~vwd~~~  494 (1068)
                      ++.  +++.||.+      ..+..||..+..-.  ..+.........+.+    +|.+.+.|+.++     .+..||..+
T Consensus       303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence            555  56667643      34778888776432  111111111111111    566777777654     377888776


Q ss_pred             CCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC-------------------ceeEEEEeCCCCeeeeEEeccccccC
Q 001490          495 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN  555 (1068)
Q Consensus       495 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~~  555 (1068)
                      ..-...-.........-+..-+|+..+.|+.++..                   -..+..||+.+.+....-.-..   .
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~  453 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G  453 (557)
T ss_pred             CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence            43222111111111111123467777776643210                   2458889988775532221111   1


Q ss_pred             CeEEEEEecCCCEEEEEECC------CeEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCC--eEEEEE
Q 001490          556 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE  626 (1068)
Q Consensus       556 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd  626 (1068)
                      ........-+++..+.|+.+      ..+..||..+ .+....-...........+  .-+|++.++|+.++  .+..||
T Consensus       454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI--LHDNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE--EECCEEEEEeeecceeehhhcC
Confidence            11111122245555556643      2467899887 5544333222221112222  22688889998888  677788


Q ss_pred             CCCCceeeecccc
Q 001490          627 TPESNSVDAAGVL  639 (1068)
Q Consensus       627 ~~~~~~~~~~~~~  639 (1068)
                      ..+.+.......|
T Consensus       532 ~~~~~W~~~~~~~  544 (557)
T PHA02713        532 VYTYEWNHICHQH  544 (557)
T ss_pred             cccccccchhhhc
Confidence            7776554443333

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.22  E-value=0.43  Score=55.87  Aligned_cols=233  Identities=12%  Similarity=0.034  Sum_probs=124.4

Q ss_pred             CCCCCEEEEEeCC------cEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCC------CcEEEEEC
Q 001490          381 SPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDA  448 (1068)
Q Consensus       381 spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d------~~i~iwd~  448 (1068)
                      +..+..+++|+.+      ..+..+|..+++-.. ...+. +...-.+++... |.  +.++||.|      .++..||.
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecC
Confidence            3345666777666      358889988864221 11121 222234455443 45  78888888      35778888


Q ss_pred             CCCceee--Eecc--CCCcEEEEeeeecCCccEEEEEEcCCc-----EEEEeCCCCCceEEecCCCCcEEEE-EEccCCC
Q 001490          449 VTGSRTY--SFEG--HGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRM-AYSANGR  518 (1068)
Q Consensus       449 ~~~~~~~--~~~~--h~~~v~~i~~~~~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~-~~s~d~~  518 (1068)
                      .+++-..  .+..  +...+..+      +|.+.+.|+.||.     |-.||..+.+-...-.... ..... ...-+|+
T Consensus       357 ~~~~W~~~a~M~~~R~~~~v~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~  429 (571)
T KOG4441|consen  357 RTNQWTPVAPMNTKRSDFGVAVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGK  429 (571)
T ss_pred             CCCceeccCCccCccccceeEEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCE
Confidence            7766322  1111  22222222      6778888988874     6677766544333222222 22222 2334677


Q ss_pred             EEEEEeeCCCCc--eeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCC-----eEEEEEcCCCeEEEE
Q 001490          519 RLFSCGTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTT  591 (1068)
Q Consensus       519 ~l~~~~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~  591 (1068)
                      ..++|+.++..+  ..+..||..++.....-.-.. ...... ++ .-++...+.||.|+     ++..||..+.+....
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v  506 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV  506 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence            777777655432  678899998876543322211 011111 22 22455666677665     377889888776655


Q ss_pred             EeCCCCCCCCceEEEecCCCEEEEEECCC-----eEEEEECCCC
Q 001490          592 IDAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPES  630 (1068)
Q Consensus       592 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~  630 (1068)
                      -........+.  ...-++...++|+.||     +|..||..+.
T Consensus       507 ~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  507 APMTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ccCcccccccc--EEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            32222211111  1223577778887765     4555665544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.21  E-value=0.52  Score=55.25  Aligned_cols=237  Identities=12%  Similarity=0.086  Sum_probs=133.4

Q ss_pred             cCCCEEEEEe-C------CeEEEEEccCceeEEEecC-CCCCeEEEEEeCCCCCEEEEEECC-C-----eEEEEEcCCce
Q 001490          788 KNDAYLFSAS-G------GVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSSE  853 (1068)
Q Consensus       788 ~dg~~l~~~~-d------g~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~~  853 (1068)
                      ..+..+++|+ .      ..+..||..+++-.....- ....-.++++.  ++.+.++|+.| |     ++..||..+.+
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            3455555554 2      3488888887643322221 22233455555  57899999999 3     77888888765


Q ss_pred             ee--eeecccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE
Q 001490          854 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  926 (1068)
Q Consensus       854 ~~--~~~~~h~~~V~~l~~spdg~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  926 (1068)
                      -.  ..+...........+  +|...|+||.||.     |..||..+.+......+...        .-......-+|++
T Consensus       361 W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~i  430 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGKL  430 (571)
T ss_pred             eeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCEE
Confidence            22  222222222222222  7889999999974     77788877653332211111        1222334456666


Q ss_pred             EEEE-eC------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc-----EEEEEcCCCcEEEEecc
Q 001490          927 FLLV-HE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRILS  994 (1068)
Q Consensus       927 la~~-~d------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-----v~vwd~~~~~~~~~~~~  994 (1068)
                      .++| .+      ..+..||..+.......... ..+...-.-.-++...+.||.|+.     |..||..+.+....-. 
T Consensus       431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-  508 (571)
T KOG4441|consen  431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-  508 (571)
T ss_pred             EEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEccc-
Confidence            6663 23      35889999887765431111 111111133457778888887763     7778888887763321 


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEeCCCCCCCCccCCCCc
Q 001490          995 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus       995 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg-----~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
                         ....     .....++..  ++...++|+.||     +|..||.  ....|...++++
T Consensus       509 ---m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~~~  557 (571)
T KOG4441|consen  509 ---MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTEPE  557 (571)
T ss_pred             ---Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCCcc
Confidence               1111     111122222  578999999987     6777865  345688777733

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.19  E-value=1.7  Score=44.21  Aligned_cols=213  Identities=13%  Similarity=0.143  Sum_probs=121.5

Q ss_pred             ecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001490          815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  893 (1068)
Q Consensus       815 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~  893 (1068)
                      +.+....+.++.|+| +.+.|.+......-.|+=...|+.+.++.- .-...-.+.+.-+|++.++--.++.+.+..+..
T Consensus        81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            344555699999999 666777666666666666667888877652 122345688888999988888899999988876


Q ss_pred             Ccee-eeeeeecCCCccc-CCCCceEEEEeeCCCEEEEEeCC-eEEEEECCCce-eee-eeccCC-------CcCEEEEE
Q 001490          894 WGIQ-TCRSLQTPDGVMT-LAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLK-QWFPIS-------SVPISQAT  961 (1068)
Q Consensus       894 ~~~~-~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~d~-~i~vwd~~~~~-~~~-~~~~~h-------~~~v~~l~  961 (1068)
                      .... .....+..-+... .......++|+|....|....+. -+.||.++.+. .+. .....+       -..|+++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            5321 1111111111111 12367899999999888886554 35555554332 111 001111       23567777


Q ss_pred             Eec-CCCEEEEEECCCcEEEEEcCCCcEEEEeccc-cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEE
Q 001490          962 FSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILST-AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1033 (1068)
Q Consensus       962 fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~ 1033 (1068)
                      |.+ .+.+|+-+.+++.+.-.|.... .+..+... ...+.  +.+.-..-.++.++  ...|...++-+..+.
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL--~~dipqaEGiamDd--~g~lYIvSEPnlfy~  308 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGL--SSDIPQAEGIAMDD--DGNLYIVSEPNLFYR  308 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCC--cccCCCcceeEECC--CCCEEEEecCCccee
Confidence            776 4556666666777777776644 34333311 11111  11222234566665  344555555554443

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.36  Score=57.27  Aligned_cols=99  Identities=19%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             EEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEeCCcEEEEEEccCC
Q 001490          325 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG  404 (1068)
Q Consensus       325 lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~~~~  404 (1068)
                      +++.|+..|.|...|+.+.-.-.     .|             -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            57888888999998886531100     01             1123579999999999999999999999999999998


Q ss_pred             CcccceEEEcccccc---EEEEEEcCCCCcEEEEEEeCCCcEEEEEC
Q 001490          405 SDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA  448 (1068)
Q Consensus       405 ~~~~~~~~~~~h~~~---v~~l~~s~d~~~~~l~s~~~d~~i~iwd~  448 (1068)
                      +.++   .+..|..+   |..+.+..++.  .++++...|.  +|.+
T Consensus       163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence            8766   34444444   33444455555  6888777775  5554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.12  E-value=0.18  Score=55.78  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=92.5

Q ss_pred             CCeEEEEEeCCCCCEEEEEE--CCCeEEEEEcCCceeeeeecccccCeEEEEEcCC----CCEEEEEeCCCcEEEEECCC
Q 001490          820 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG  893 (1068)
Q Consensus       820 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spd----g~~l~s~s~dg~i~iwd~~~  893 (1068)
                      .++..++|.- +.+.+.+.-  .+|.+++=   +.+.+..|+    .|..+.|+|-    -..|+.......|.||.+.-
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4678899984 444444432  23333322   123344444    4889999985    33455566778899999873


Q ss_pred             C--ceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce-eeeeeccCCCcCEEEEEEecCCCEE
Q 001490          894 W--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMV  969 (1068)
Q Consensus       894 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l  969 (1068)
                      .  +..+...-++.+-....+---..+.|+|....|++ .....-.++++.... .+.. -....+.|-+.+|..||+.|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVka-Di~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKA-DIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEE-eccCCceEEEEEecCcCCEE
Confidence            2  22222222222111111123457889999999988 444444455655332 2222 12347899999999999877


Q ss_pred             EEEEC-CCcEEEEEcCCCcE
Q 001490          970 FTSFV-DGTLSIHEASNLEV  988 (1068)
Q Consensus       970 ~t~~~-dg~v~vwd~~~~~~  988 (1068)
                      +++-. .=.-++||-....+
T Consensus       171 VVAvGSsLHSyiWd~~qKtL  190 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQKTL  190 (671)
T ss_pred             EEEeCCeEEEEEecCchhhh
Confidence            76533 33478898776543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=1.6  Score=44.39  Aligned_cols=205  Identities=16%  Similarity=0.237  Sum_probs=122.1

Q ss_pred             cccccEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001490          708 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  787 (1068)
Q Consensus       708 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  787 (1068)
                      +....+.++.|+|+.+.|++......-.+|-                      ...|..+.+.++++   -.....+.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence            3445599999999999999998876555542                      23455466666654   3344567888


Q ss_pred             cCCCEEEEEe-CCeEEEEEccCceeEEE-------e---cCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCce-e-
Q 001490          788 KNDAYLFSAS-GGVISLYIVMTFKTILT-------I---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-V-  854 (1068)
Q Consensus       788 ~dg~~l~~~~-dg~i~iwd~~~~~~~~~-------~---~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~-  854 (1068)
                      .+|+++++-. ++.+.++.+........       +   ...+...-.+||+| ..+.|..+-+-.-+.||...-+. . 
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence            8888887765 67787777664422211       1   11245678999999 56666667766667776655322 1 


Q ss_pred             -eeeeccc-------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCC
Q 001490          855 -ISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  925 (1068)
Q Consensus       855 -~~~~~~h-------~~~V~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  925 (1068)
                       +.....+       -..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........+-...-.....++..++|.
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence             1111111       23467788876 45667777778877777776543211111111222221113456677888887


Q ss_pred             EEEEEeCCeEEEE
Q 001490          926 RFLLVHETHLAIY  938 (1068)
Q Consensus       926 ~la~~~d~~i~vw  938 (1068)
                      +-++++.+-.+.+
T Consensus       297 lYIvSEPnlfy~F  309 (316)
T COG3204         297 LYIVSEPNLFYRF  309 (316)
T ss_pred             EEEEecCCcceec
Confidence            7777666555444

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.06  E-value=1.4  Score=47.96  Aligned_cols=253  Identities=10%  Similarity=0.035  Sum_probs=105.7

Q ss_pred             CccEEEEEE-cCCcEEEEeCCCCCc----eEEecC---CC----CcEEEEEEccCCCEEEEEee--CCCCceeEEEEeCC
Q 001490          474 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES  539 (1068)
Q Consensus       474 ~~~~l~s~s-~dg~i~vwd~~~~~~----~~~~~~---~~----~~i~~~~~s~d~~~l~~~~~--~~~~~~~i~~wd~~  539 (1068)
                      +.++|+..+ ..++|.+.|..+...    ...+..   ..    .....+-.-|+|+.++++-.  ++++.+-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666666 678899999874321    122221   00    12233445589988887654  34556778899988


Q ss_pred             CCeeeeEEeccccccCCeEEEEEecCCCEEEEEE--------------------CCCeEEEEEcCCCeEEEEEeCCCCCC
Q 001490          540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP  599 (1068)
Q Consensus       540 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~  599 (1068)
                      +.+.............--+.+.+.|..+.+++..                    .-.++.+||+.+.+.++++.......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            8888777665442223456677888888888764                    23689999999999999998764322


Q ss_pred             CCceEEEec--CCCEEEEEE-CCCeEEEEEC-CCCcee--eeccccccceeeeEEcCC-ccccccccccCeeeecCCCCC
Q 001490          600 ENPRICFNK--NGTLLAVIA-NENRIKILET-PESNSV--DAAGVLSDNLRKLSVNPI-STVTGAGIANGSVSVNEDPKE  672 (1068)
Q Consensus       600 ~v~~v~~s~--~~~~l~~~~-~dg~i~iwd~-~~~~~~--~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  672 (1068)
                      ....+.|..  +..+-++++ -..+|..|-- ..+...  ..+......+..-.+-+. ....++.+-...+.+    |.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i----Sl  321 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI----SL  321 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-----T
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE----cc
Confidence            344566654  444433332 2344444433 433211  011100000000000000 000000111112222    45


Q ss_pred             Ccccc-eeecccccceeecccccCCc-ccceeecCC------------ccccccEEEEEEecCCceEEEeec
Q 001490          673 DVKPE-ISVEAENKSEVEKPLFARPS-ECQSLLLPS------------KVKANKISRLTYNNGGQAIFALAS  730 (1068)
Q Consensus       673 ~~~~l-~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~------------~~~~~~i~~l~~s~~g~~l~~~~~  730 (1068)
                      |.++| +++-..|.+|.||+...... ...++.+-.            ..-.+...-+..|-||+++..+.+
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            55555 66778899999997643322 222221111            111223467788889988876654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.93  E-value=1.5  Score=47.62  Aligned_cols=249  Identities=8%  Similarity=0.002  Sum_probs=105.4

Q ss_pred             CCCEEEEEeeCCCCceeEEEEeCCC----CeeeeEEeccccc----cCCeEEEEEecCCCEEEEE--E----CCCeEEEE
Q 001490          516 NGRRLFSCGTSKEGESFLVEWNESE----GAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAA--G----DDHVIKIW  581 (1068)
Q Consensus       516 d~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~--s----~dg~i~iw  581 (1068)
                      +.++|+..+-.   .++|++.|+.+    .++.+++......    -.....+..-|+|+.++++  .    .-|.+.+.
T Consensus        86 ~Rr~Li~PgL~---SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   86 ERRYLILPGLR---SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             -S-EEEEEBTT---T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             cCCcEEeeeec---cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            45677776532   45699999873    4555555541111    1223445556888888884  3    33568899


Q ss_pred             EcCCCeEEEEEeCCCC-CCCCceEEEecCCCEEEEEE--------------------CCCeEEEEECCCCceeeeccccc
Q 001490          582 DMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIA--------------------NENRIKILETPESNSVDAAGVLS  640 (1068)
Q Consensus       582 d~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~  640 (1068)
                      |-++.+.....+.... ..--..+-+.|..+.+++..                    ...++.+||+.+.+.++++.-..
T Consensus       163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            9988888887765432 22345677888888888752                    24689999999999988887554


Q ss_pred             cc--eeeeEEcCCcc--ccccccccCeeeecCCCCCCcccceeecccccceeecc-cccCCcccceeecCCc--------
Q 001490          641 DN--LRKLSVNPIST--VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP-LFARPSECQSLLLPSK--------  707 (1068)
Q Consensus       641 ~~--i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~~~~~~~~--------  707 (1068)
                      +.  ...+.|.++..  ...++..                     ...+|-.|-. +...-.....+.++..        
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~a---------------------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp  301 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCA---------------------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP  301 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE-----------------------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred             CCCceEEEEecCCCCccceEEEEe---------------------ccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence            33  33444433221  1111111                     1122221111 1110000111111111        


Q ss_pred             -------cccccEEEEEEecCCceEEEeec-CccEEEEeccCCccC-CCccceeccCCcccCCCCCCceeeecCCCCCCC
Q 001490          708 -------VKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLT-LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  778 (1068)
Q Consensus       708 -------~~~~~i~~l~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  778 (1068)
                             .-..-|+.+.+|.|.++|..... .|.++.||+..+... ..+.......+.--+.        ....+..-.
T Consensus       302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~--------~~v~g~~l~  373 (461)
T PF05694_consen  302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH--------PVVKGKRLR  373 (461)
T ss_dssp             GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B----------TTS------
T ss_pred             ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC--------ccccccccC
Confidence                   11345789999999999876665 699999999875421 1111111000000000        000111133


Q ss_pred             CCeeEEEEecCCCEEEEE
Q 001490          779 EAVPCFALSKNDAYLFSA  796 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~  796 (1068)
                      +...-+.+|.||+.|.+.
T Consensus       374 GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  374 GGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             S----EEE-TTSSEEEEE
T ss_pred             CCCCeEEEccCCeEEEEE
Confidence            455778999999988765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.78  E-value=1.2  Score=43.48  Aligned_cols=135  Identities=14%  Similarity=0.117  Sum_probs=77.7

Q ss_pred             cccEEEEEEcCCCCcEEEEEEe-CC---------CcEEEEECCCCceeeEeccCCCcEEEEeeeecCCcc-EEEEEEcCC
Q 001490          417 VGNVNDLAFSAPCKQISVITCG-DD---------KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDG  485 (1068)
Q Consensus       417 ~~~v~~l~~s~d~~~~~l~s~~-~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~-~l~s~s~dg  485 (1068)
                      ..+.+.-..+|+|+  ++ .|. .|         |.++.|-.  +..+..+...-+.-+.++|.  .+.+ +.++-+.+-
T Consensus       108 knR~NDgkvdP~Gr--yy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~  180 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNY  180 (310)
T ss_pred             hcccccCccCCCCc--ee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccc--ccCcEEEEEccCce
Confidence            34566777899999  43 232 11         22333321  11111111122223445564  2333 445556677


Q ss_pred             cEEEEeCC--CCC-----ceEEecC----CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEecccccc
Q 001490          486 KIKAWLYD--SLG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  554 (1068)
Q Consensus       486 ~i~vwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~  554 (1068)
                      .|.-||.+  ++.     .+..++.    .......+++..+|++.+++..    .++|...|+.+|+.+..+.-..   
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---  253 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---  253 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---
Confidence            78888843  222     2222222    1112345666778888877765    4579999999999999998877   


Q ss_pred             CCeEEEEEecC
Q 001490          555 NSVSVVHFDTA  565 (1068)
Q Consensus       555 ~~v~~~~~~~~  565 (1068)
                      ..+++++|...
T Consensus       254 ~qitsccFgGk  264 (310)
T KOG4499|consen  254 PQITSCCFGGK  264 (310)
T ss_pred             CceEEEEecCC
Confidence            88999999754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.71  E-value=2.9  Score=42.68  Aligned_cols=193  Identities=11%  Similarity=0.074  Sum_probs=115.4

Q ss_pred             cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490          712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  791 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  791 (1068)
                      -...+.|..+|..+-+++..|.-.|                    +.+++.+|+......++.   ..--..+++..|.-
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~l  102 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDKL  102 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCEE
Confidence            3567888888887777777664332                    234555665555555532   33344566666655


Q ss_pred             EEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc-----cCeE
Q 001490          792 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRVT  866 (1068)
Q Consensus       792 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-----~~V~  866 (1068)
                      +..+--++...+||..+.+.+.++.- .+.=..++  . |++.|+.......++++|..+-+....+....     ..++
T Consensus       103 ~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN  178 (264)
T PF05096_consen  103 YQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN  178 (264)
T ss_dssp             EEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred             EEEEecCCeEEEEccccceEEEEEec-CCcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence            55566689999999999999988863 34555666  3 56666666667789999998877666654321     2345


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCC-------CcccCCCCceEEEEeeCCCEEEEEeC
Q 001490          867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE  932 (1068)
Q Consensus       867 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~spdg~~la~~~d  932 (1068)
                      -+.+- +|...|=.=....|..-|..+|+.....-+..+.       .......-...+|+.|....+.+.+.
T Consensus       179 ELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  179 ELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            56775 6777776666667888888888765543222111       11111235789999998877776443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.61  E-value=0.032  Score=39.69  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcc
Q 001490          311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK  345 (1068)
Q Consensus       311 ~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~  345 (1068)
                      ..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus        12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            4799999999998 8999999999999999 5543

>PRK13684 Ycf48-like protein; Provisional

Probab=95.50  E-value=3.4  Score=45.05  Aligned_cols=155  Identities=11%  Similarity=0.007  Sum_probs=89.3

Q ss_pred             CCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001490          819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  897 (1068)
Q Consensus       819 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~  897 (1068)
                      ...+.++.+.| ++.+++++. .|.++.-.-..++.-... ..-...++++.+.++++.++. +..|.+++=..+.++. 
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s-  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES-  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc-
Confidence            45788999999 777766554 564443211122211111 223457899999999987765 4567654323333321 


Q ss_pred             eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeec--cCCCcCEEEEEEecCCCEEEEEECC
Q 001490          898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD  975 (1068)
Q Consensus       898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~d  975 (1068)
                       ...+..+....  ...+..+++.+++..++++.+|.+. ...+.|+.-....  ..-......+.|..+++.+++ +..
T Consensus       248 -W~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~  322 (334)
T PRK13684        248 -WSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR  322 (334)
T ss_pred             -cccccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence             11111111100  1247789999999988888888665 3445555433322  112346788888888777664 467


Q ss_pred             CcEEEEE
Q 001490          976 GTLSIHE  982 (1068)
Q Consensus       976 g~v~vwd  982 (1068)
                      |.|.-|+
T Consensus       323 G~il~~~  329 (334)
T PRK13684        323 GVLLRYV  329 (334)
T ss_pred             ceEEEec
Confidence            8887665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.43  E-value=6  Score=44.51  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=42.0

Q ss_pred             EEEEeeCCCEEEEEeC--CeEEEEECCCc--eeeeeeccCCCcCEEEEEEecCCCEEEEEEC
Q 001490          917 HIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV  974 (1068)
Q Consensus       917 ~~~~spdg~~la~~~d--~~i~vwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~  974 (1068)
                      -+||.|..+.+|++++  +.|.||.+...  ..+.++.-....+...++|-.|..+|+..|.
T Consensus       343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk  404 (671)
T PF15390_consen  343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK  404 (671)
T ss_pred             eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence            4799999999998644  67999998642  2233333344778889999999887776653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.39  E-value=3.1  Score=50.32  Aligned_cols=160  Identities=15%  Similarity=0.127  Sum_probs=95.6

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEeccCCCcEE-------------EEeeeecCCccEEEEEEc----------CCcEEE
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY-------------SLCPHAKENIHFIFSISV----------DGKIKA  489 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~s~----------dg~i~v  489 (1068)
                      .++.++.|+.+.-.|.++|+.+..+. ..+.|.             .+.-.|.-.+..++.++.          +|.|+-
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            57778889999999999999987763 222221             001001001225555542          688999


Q ss_pred             EeCCCCCceEEecCCC---------C--------cE-EEEEEccCCCEEEEEeeC--------------CCCceeEEEEe
Q 001490          490 WLYDSLGARVDYDAPG---------L--------GC-TRMAYSANGRRLFSCGTS--------------KEGESFLVEWN  537 (1068)
Q Consensus       490 wd~~~~~~~~~~~~~~---------~--------~i-~~~~~s~d~~~l~~~~~~--------------~~~~~~i~~wd  537 (1068)
                      +|..+++....+....         +        .+ ..+++.++...++....+              +.-.+.|.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            9999999887654210         0        11 234556655555543221              01135577788


Q ss_pred             CCCCeeeeEEeccc--ccc----CCeEEEEEec-CCC---EEEEEECCCeEEEEEcCCCeEEEEEe
Q 001490          538 ESEGAIKRTYQGLQ--LQH----NSVSVVHFDT-AKD---QILAAGDDHVIKIWDMNKVQLLTTID  593 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~--~~~----~~v~~~~~~~-~~~---~l~~~s~dg~i~iwd~~~~~~~~~~~  593 (1068)
                      .++|+..-.++...  .-.    ....-+.+.. +|+   .++.++.+|.++++|.++|+.+...+
T Consensus       421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            89998887776522  000    1111122322 453   67889999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.39  E-value=0.071  Score=37.95  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.6

Q ss_pred             CcceEEEEECCCCCEEEEEeCCcEEEEEEcc
Q 001490          372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  402 (1068)
Q Consensus       372 ~~~V~~~~~spdg~~las~~~d~~i~vwd~~  402 (1068)
                      ...|.+++|+|...+||.++.+|.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3579999999999999999999999999983

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.18  E-value=3.5  Score=40.37  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecCCCCCeEEEEEeC
Q 001490          783 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  829 (1068)
Q Consensus       783 ~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  829 (1068)
                      .+++..+|.+.++.- .++|.-.|..+|+.+.++.-+...|++++|--
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            455666777666654 68999999999999999999999999999963

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.15  E-value=0.057  Score=52.28  Aligned_cols=103  Identities=17%  Similarity=0.195  Sum_probs=68.6

Q ss_pred             CEEEEE-eCCeEEEEEccCc-eeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc-cCeEE
Q 001490          791 AYLFSA-SGGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG  867 (1068)
Q Consensus       791 ~~l~~~-~dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~  867 (1068)
                      .-+++| ++|.|.+|...-. .....+......|.++.-.-+++.+..++..||.|+.|++.-++.+...-.|. .++..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            334444 4899999987622 11111222223333333333356699999999999999999988888877787 56666


Q ss_pred             EEEcCCCCEEEEE--eCCCcEEEEECCC
Q 001490          868 LVFSDALNILVSS--GGDAQIFVWDVDG  893 (1068)
Q Consensus       868 l~~spdg~~l~s~--s~dg~i~iwd~~~  893 (1068)
                      +..+..++.++++  |.|..++.|++..
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchhh
Confidence            6666666777777  7777788887765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.85  E-value=0.68  Score=53.58  Aligned_cols=125  Identities=10%  Similarity=0.089  Sum_probs=77.6

Q ss_pred             EecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec-ccccCeEEEEEc--CCCCEEEEEeCCCcEEEEE
Q 001490          814 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       814 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--pdg~~l~s~s~dg~i~iwd  890 (1068)
                      ++...-...+-+.-|. -++..++-+...++.|||...+.....-. ...+.|..+.|.  |||+.+++.|-.+.|.++.
T Consensus        24 ~~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   24 TFETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             EEecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            3443444555566665 55555555555689999999886432222 346789999885  7999999999999999986


Q ss_pred             CCC----CceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEEC
Q 001490          891 VDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  940 (1068)
Q Consensus       891 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~  940 (1068)
                      -..    ........++...-....+.+|....|.++|.+++ +..+.+.|+|-
T Consensus       103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence            431    11111112222111111113688999999998555 45667888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.81  E-value=5.9  Score=43.99  Aligned_cols=138  Identities=15%  Similarity=0.168  Sum_probs=78.5

Q ss_pred             CCeeEEEEecCCCEEEEEe------------C-CeEEEEEccC--ce--eEEEecCCCCCeEEEEEeCCCCCEEEEEECC
Q 001490          779 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD  841 (1068)
Q Consensus       779 ~~v~~l~~s~dg~~l~~~~------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  841 (1068)
                      .....|+|.++|+++++..            . +.|.+++-.+  |+  ....+.......+.+++.+ ++ +++ +...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence            4567899999999887752            1 2677776432  32  2234433344568899998 77 444 4444


Q ss_pred             CeEEEE-EcCC-----ce--e-eeeecc----cccCeEEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 001490          842 STILIY-NARS-----SE--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVW  889 (1068)
Q Consensus       842 g~v~iw-d~~~-----~~--~-~~~~~~----h~~~V~~l~~spdg~~l~s~s~d-------------------g~i~iw  889 (1068)
                       .|..| +...     ++  . +..+..    +......++|.|||.+.++.+..                   |.|.-+
T Consensus        91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence             34434 4421     12  1 122322    13447789999999887766521                   334444


Q ss_pred             ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE
Q 001490          890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  929 (1068)
Q Consensus       890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~  929 (1068)
                      +.++++.   ..+.  .+..    ....++|+++|+++++
T Consensus       170 ~pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       170 NPDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC  200 (367)
T ss_pred             ecCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence            5544331   1111  2221    2567999999999877

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.59  E-value=3.8  Score=41.25  Aligned_cols=211  Identities=11%  Similarity=0.085  Sum_probs=130.3

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 001490          821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  900 (1068)
Q Consensus       821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~  900 (1068)
                      .-..++-+| ||..-.++...|.|---|..+|+....--+....-..|..-|||...++-+.. -|.-.|-++.+...  
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--  138 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--  138 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence            345677788 88888888888888888888988765555555556778889999887764443 46666666655433  


Q ss_pred             eeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490          901 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       901 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v  980 (1068)
                       ++....+..  .......|.++|.+-.++..|.---.|..++. +..+..........++..|||...++.-.+..|..
T Consensus       139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~-i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiar  214 (353)
T COG4257         139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNV-ISVFPAPQGGGPYGICATPDGSVWYASLAGNAIAR  214 (353)
T ss_pred             -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCc-eeeeccCCCCCCcceEECCCCcEEEEeccccceEE
Confidence             222222222  35778999999999988644322222221111 11112223445677899999999888777888888


Q ss_pred             EEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490          981 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus       981 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
                      .|..++... .+.....+..+       +..+-.+| -+..-++....|.++-+|.+...  |..-|-+.
T Consensus       215 idp~~~~ae-v~p~P~~~~~g-------sRriwsdp-ig~~wittwg~g~l~rfdPs~~s--W~eypLPg  273 (353)
T COG4257         215 IDPFAGHAE-VVPQPNALKAG-------SRRIWSDP-IGRAWITTWGTGSLHRFDPSVTS--WIEYPLPG  273 (353)
T ss_pred             cccccCCcc-eecCCCccccc-------ccccccCc-cCcEEEeccCCceeeEeCccccc--ceeeeCCC
Confidence            887777222 22211111111       12244455 36777777777788877776544  77766544

>PHA03098 kelch-like protein; Provisional

Probab=94.57  E-value=1.5  Score=51.80  Aligned_cols=188  Identities=10%  Similarity=-0.026  Sum_probs=95.7

Q ss_pred             cCCCEEEEEe-C------CeEEEEEccCceeEEE--ecCCCCCeEEEEEeCCCCCEEEEEECCC-----eEEEEEcCCce
Q 001490          788 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE  853 (1068)
Q Consensus       788 ~dg~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~  853 (1068)
                      .++..++.|+ +      ..+..||..+.+-...  +.........++  - ++++++.|+.++     .+..||..+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4555555554 2      2477888776543221  111111222222  2 678888888763     57788887654


Q ss_pred             ee--eeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCC
Q 001490          854 VI--SKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  925 (1068)
Q Consensus       854 ~~--~~~~~h~~~V~~l~~spdg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  925 (1068)
                      -.  ..+....... +++ .-+++..+.||.+      ..+..||..+++......+.  ...      ....+..-+++
T Consensus       370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r------~~~~~~~~~~~  439 (534)
T PHA03098        370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISH------YGGCAIYHDGK  439 (534)
T ss_pred             eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--ccc------cCceEEEECCE
Confidence            22  1221111111 122 2367777877742      35888998876543321111  111      11223344666


Q ss_pred             EEEEEe-C--------CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCcEE
Q 001490          926 RFLLVH-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ  989 (1068)
Q Consensus       926 ~la~~~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~  989 (1068)
                      +.+.|+ +        ..+.+||..+++....-.......-.++ ...+++.++.||.+     ..|.+||..+.+..
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            666542 1        2388999987765432111111111112 22377777777754     46888888877654

>PHA03098 kelch-like protein; Provisional

Probab=94.48  E-value=1.6  Score=51.68  Aligned_cols=153  Identities=8%  Similarity=-0.013  Sum_probs=73.7

Q ss_pred             CccEEEEEEcCC-----cEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCC--ceeEEEEeCCCCeeeeE
Q 001490          474 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT  546 (1068)
Q Consensus       474 ~~~~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~  546 (1068)
                      ++.+.+.|+.++     .+..||..+.+-...-..........+..-+++..+.|+....+  -..+..||+.+++....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            556777777652     46677766544222111111111111223456666666632221  24688999887654332


Q ss_pred             EeccccccCCeEEEEEecCCCEEEEEECC--------CeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEEC
Q 001490          547 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      -.... ..... ++ ...++...+.|+.+        ..+.+||..+++....-.....  .....+..-++++++.|+.
T Consensus       422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~  496 (534)
T PHA03098        422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD  496 (534)
T ss_pred             CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence            11111 01111 22 22345555556532        2388899888765543221111  1111122236777777765


Q ss_pred             C-----CeEEEEECCCCc
Q 001490          619 E-----NRIKILETPESN  631 (1068)
Q Consensus       619 d-----g~i~iwd~~~~~  631 (1068)
                      +     +.+.+||..+.+
T Consensus       497 ~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcccceeEEEeCCCCE
Confidence            4     467778877653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.28  E-value=11  Score=41.95  Aligned_cols=281  Identities=12%  Similarity=0.139  Sum_probs=142.6

Q ss_pred             cCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEEC---C--CCCEEEEEeCC
Q 001490          319 HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS---P--DGSLLGVAYSK  393 (1068)
Q Consensus       319 spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~s---p--dg~~las~~~d  393 (1068)
                      +++++..+++||..|.++||+...+..... .+              .+-..-+.+|-.++.-   +  +...||+ -.-
T Consensus        33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP   96 (418)
T PF14727_consen   33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAV-LHP   96 (418)
T ss_pred             CCCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence            344555789999999999999865442211 00              0011123567666643   2  2345555 466


Q ss_pred             cEEEEEEccCCCcc------cceEEEccccc--cEEEEEEcC----CCCcEEEEEEeCCCcEEEEECCCCceeeEecc--
Q 001490          394 HIVQLYAYHGGSDA------RQQLEIDAHVG--NVNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--  459 (1068)
Q Consensus       394 ~~i~vwd~~~~~~~------~~~~~~~~h~~--~v~~l~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--  459 (1068)
                      +.+.||.+......      .....+..|.-  ....++.-|    .|+. ++..-+-||.+.+++-+.-...+.+.+  
T Consensus        97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l  175 (418)
T PF14727_consen   97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL  175 (418)
T ss_pred             CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence            67888888322111      11112223332  122222222    2233 788889999999999554433333333  


Q ss_pred             CCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCce-----------------------EEecCCCC--cEEEEEEc
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------------------VDYDAPGL--GCTRMAYS  514 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~-----------------------~~~~~~~~--~i~~~~~s  514 (1068)
                      ..++   +++.+..  +.+++++.+..+..|........                       ..+...+.  .+..+.++
T Consensus       176 lPgP---l~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~  250 (418)
T PF14727_consen  176 LPGP---LCYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS  250 (418)
T ss_pred             CCcC---eEEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence            3344   4444443  37888888888888865321100                       01111111  23333444


Q ss_pred             cCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEec----CC---CEEEEEECCCeEEEEEcCCCe
Q 001490          515 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT----AK---DQILAAGDDHVIKIWDMNKVQ  587 (1068)
Q Consensus       515 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~s~dg~i~iwd~~~~~  587 (1068)
                      .....+++-+     +..+...+. +|......+- .  ..+.....|..    ++   ..++.++.++++.||.=.+  
T Consensus       251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--  319 (418)
T PF14727_consen  251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--  319 (418)
T ss_pred             CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--
Confidence            3444444443     445777765 4544332222 2  02222222222    22   2488899999999986443  


Q ss_pred             EEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCce
Q 001490          588 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  632 (1068)
Q Consensus       588 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~  632 (1068)
                      ++-........-.+....|..-...+++-+.+|.+.+-=+.+...
T Consensus       320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs  364 (418)
T PF14727_consen  320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS  364 (418)
T ss_pred             EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence            333222211111111122223355788888899998877766543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.26  E-value=4.9  Score=42.56  Aligned_cols=189  Identities=10%  Similarity=0.055  Sum_probs=104.7

Q ss_pred             eeEEEEecCCCEEEEEe-----C--------CeEEEEEccCceeEEEecCC------CCCeEEEEEeCCCC----CEEEE
Q 001490          781 VPCFALSKNDAYLFSAS-----G--------GVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI  837 (1068)
Q Consensus       781 v~~l~~s~dg~~l~~~~-----d--------g~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~las  837 (1068)
                      |..+...++|++-+.=.     .        -+|.+||+.+.+.++++.-+      .+.+..+++...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            44566666666555422     1        26889999999988876532      34678888876322    24444


Q ss_pred             EE-CCCeEEEEEcCCceeeeeeccc-------------------ccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 001490          838 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW  894 (1068)
Q Consensus       838 g~-~dg~v~iwd~~~~~~~~~~~~h-------------------~~~V~~l~~sp---dg~~l~s~s~dg~i~iwd~~~~  894 (1068)
                      .. ..+-|.|+|+.+++..+.+..+                   .+.+..++.+|   ||++|....-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            43 3358999999988754443321                   13366677765   677777666554 245554431


Q ss_pred             ceee-----ee----eeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCce---eeeee-ccCC-CcCEEE
Q 001490          895 GIQT-----CR----SLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQW-FPIS-SVPISQ  959 (1068)
Q Consensus       895 ~~~~-----~~----~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~---~~~~~-~~~h-~~~v~~  959 (1068)
                      ....     ..    .++.. +...  .....++++++|.+..+ ...+.|..|+..+.-   ....+ .... -..+..
T Consensus       162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~  238 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG  238 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred             HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence            1110     00    00111 0000  14567899999998888 678899999988621   11111 2222 357788


Q ss_pred             EEEec--CCCEEEEEE
Q 001490          960 ATFSC--DCRMVFTSF  973 (1068)
Q Consensus       960 l~fs~--dg~~l~t~~  973 (1068)
                      +.+.+  +|.+.+.+.
T Consensus       239 ~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  239 LKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEE-T--TS-EEEEE-
T ss_pred             eeeccccCceEEEEEC
Confidence            89988  777666553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.25  E-value=17  Score=43.99  Aligned_cols=104  Identities=14%  Similarity=0.153  Sum_probs=65.6

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEccCceeEEEec--CCCCCeEEEEEeCCCCCEEEEEECCCeEEE--EEcCCceeeeeec
Q 001490          784 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE  859 (1068)
Q Consensus       784 l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~i--wd~~~~~~~~~~~  859 (1068)
                      .|+.|-..++.+|-+..+++||+...+.++...  .....|+.+.+   .+..+++|...-.|.+  |+-...+ +..+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~-l~~fa 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQ-LIVFA 1014 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCe-EEEEe
Confidence            466687778888889999999998877766543  33557778877   4567777876655555  4444333 33343


Q ss_pred             c--cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001490          860 G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  892 (1068)
Q Consensus       860 ~--h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~  892 (1068)
                      .  -...|+++.+-. -..+|.+..=|.+.+-.+.
T Consensus      1015 dD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLD-YDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCCccceeeEEEEec-CCceeeccccCcEEEEECC
Confidence            2  223466666654 4456666666655555543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.18  E-value=1.1  Score=52.05  Aligned_cols=113  Identities=13%  Similarity=0.169  Sum_probs=78.1

Q ss_pred             cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCC----
Q 001490          419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD----  493 (1068)
Q Consensus       419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~----  493 (1068)
                      ..+-+.-|.-++  ..+.-+....+.|||...+.....-. ...+.|..+.|...++++.+++.+-.+.|.++--.    
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            444555555566  44444445679999998887554332 35789999999999999999999999999998431    


Q ss_pred             -CCCc----eE--EecC-CCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCC
Q 001490          494 -SLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  539 (1068)
Q Consensus       494 -~~~~----~~--~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~  539 (1068)
                       ....    ..  .+.. ..++|....|.++|..++.++.      .+.++|-.
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence             1111    11  1222 3368889999999988877643      58887743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.14  E-value=2.8  Score=48.27  Aligned_cols=183  Identities=12%  Similarity=0.122  Sum_probs=98.1

Q ss_pred             eEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeee----cccccCeEEEEEcCCCC
Q 001490          800 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL----EGHSKRVTGLVFSDALN  875 (1068)
Q Consensus       800 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~----~~h~~~V~~l~~spdg~  875 (1068)
                      .|+||++. |+.+.++.-..+.+..+.|+.  ..-|++...+|++++|++. |+.+...    +.....|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence            47888875 666555544445888999995  4566668899999999986 3333221    22233466666666664


Q ss_pred             EEEEEeCCCcEE-EEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE--EEEEeC--CeEEEEECCCceeeeeec
Q 001490          876 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF  950 (1068)
Q Consensus       876 ~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--la~~~d--~~i~vwd~~~~~~~~~~~  950 (1068)
                      .+.+.  +|.+. +-+++...   .+.++...+...   .-.+-+.-+++..  +...-+  -...++-.+.+......+
T Consensus       141 avlt~--~g~v~~i~~~~~~~---~~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  141 AVLTV--SGQVILINGVEEPK---LRKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EEEec--CCcEEEEcCCCcch---hhhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            44443  44333 33333211   111111111111   1122222222211  111111  011122222211111001


Q ss_pred             cCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490          951 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS  994 (1068)
Q Consensus       951 ~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~  994 (1068)
                      ......+..+..||+.++|+--..+|.|.+-+.+..+..+.+..
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            11136788899999999999999999999999998888888773

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.11  E-value=11  Score=42.11  Aligned_cols=201  Identities=12%  Similarity=0.017  Sum_probs=108.7

Q ss_pred             EecCCCEEEEEeCCeEEEEEccCceeEEEecCCC--CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccc-
Q 001490          786 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-  862 (1068)
Q Consensus       786 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~-  862 (1068)
                      ..-||+..+...+|.|.-.|..+++.+.......  ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            4456766666668888888988888766544332  3344444444 565 6668889999999998999887776555 


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe--CCeEEEEEC
Q 001490          863 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA  940 (1068)
Q Consensus       863 ~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--d~~i~vwd~  940 (1068)
                      -.+..-..-.++..++ .+.++.+...+-.+++..-..........     .+..-....++...+...  ++.+.-.|+
T Consensus       143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence            1122222222333222 22556666666665543221111110000     011111134444444433  456777777


Q ss_pred             CCceeeeeeccCCCcC---EEEEEEec-----CCCEEEEEECCCcEEEEEcCCCcEEEEecc
Q 001490          941 EELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS  994 (1068)
Q Consensus       941 ~~~~~~~~~~~~h~~~---v~~l~fs~-----dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~  994 (1068)
                      .+|...-.....+...   +.......     .+.-+..++.++.+.-.|..+|+.+.++..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            7777665422111111   10011111     112235666788888999999999988874

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.05  E-value=6.4  Score=47.29  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=38.4

Q ss_pred             cCcEEEEecCCCcceeeeeeeeeecc---ccccceeeeee-cCCCcceEEEEECCCCCEEEEEeCCcEEEEEEc
Q 001490          332 VGDTGLWDVNSGQKLFIRNFKVWDIG---ACSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY  401 (1068)
Q Consensus       332 dg~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l-~~h~~~V~~~~~spdg~~las~~~d~~i~vwd~  401 (1068)
                      |+.+.+||-..... ...+++.-+-.   .....++.... ......|..|.+||+|++||..+..| |.|-.+
T Consensus        41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            46777777655433 22233322211   11122232222 23356899999999999999998877 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.03  E-value=0.19  Score=48.78  Aligned_cols=105  Identities=12%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             CCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEE-EcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-  461 (1068)
Q Consensus       384 g~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~-~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-  461 (1068)
                      ++.+++|+.+|.|.+|++..-.....  ....-...|.++- -..++.  +..+++.|+.|+.|++.-++.+.....|. 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d--~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSD--RVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHH--hhhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeeccccC
Confidence            56788999999999999873211110  0111122333332 223344  67888899999999999888887776676 


Q ss_pred             CcEEEEeeeecCCccEEEEE--EcCCcEEEEeCCC
Q 001490          462 APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS  494 (1068)
Q Consensus       462 ~~v~~i~~~~~~~~~~l~s~--s~dg~i~vwd~~~  494 (1068)
                      .++.......  .+.++.++  |.|..++.|++..
T Consensus       146 ~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  146 ESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence            4444333322  33455555  6666666666543

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=93.99  E-value=25  Score=45.06  Aligned_cols=151  Identities=15%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  386 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~  386 (1068)
                      +.|...++.|.-+|+|.++ =  -.|+.++.||..+++         |..-          -..-...+..++-.-||+.
T Consensus       359 kaH~A~LTgv~~~~~ge~l-R--lHd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~l  416 (1774)
T PF11725_consen  359 KAHIAHLTGVHTDPDGEQL-R--LHDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKL  416 (1774)
T ss_pred             HHHHHHhhccccCCCCCeE-E--eecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCce
Confidence            3566778888889999854 2  246888888876542         4310          0112345666666667776


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc------e--eeEec
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------R--TYSFE  458 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~--~~~~~  458 (1068)
                      .| =+.+   .|-|+..+....      ..-..+.+...+++|.- .+.++-....+.+|++....      .  ...+.
T Consensus       417 YA-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~  485 (1774)
T PF11725_consen  417 YA-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLA  485 (1774)
T ss_pred             Ee-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeecc
Confidence            66 2222   244665554211      22345778888999983 36666666677999987541      1  12233


Q ss_pred             cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  494 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~  494 (1068)
                      +-.....+|.++.  +  .|+++..+|.++.=++..
T Consensus       486 dG~a~A~~VgLs~--d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  486 DGKAQAQSVGLSN--D--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             CCchhhhheeecC--C--eEEEEeCCCCEEeccccc
Confidence            3333455566643  3  688889999888776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.89  E-value=17  Score=43.73  Aligned_cols=95  Identities=9%  Similarity=0.016  Sum_probs=56.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEccC-ceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceee
Q 001490          777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  855 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  855 (1068)
                      ..-.|..+.++|+|++||..+...|.|..+.. +..-..+.+....|.|=.+.- +..++                    
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------  141 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------  141 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence            45688999999999999999877777766642 111111222222222222211 11111                    


Q ss_pred             eeecccccCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 001490          856 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW  894 (1068)
Q Consensus       856 ~~~~~h~~~V~~l~~spd---g~~l~s~s~dg~i~iwd~~~~  894 (1068)
                        ...+...|..+.|+|.   +..|+.-..|+++++||+...
T Consensus       142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence              0123445777888875   477888888888888888653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.89  E-value=2.3  Score=41.54  Aligned_cols=150  Identities=11%  Similarity=0.098  Sum_probs=82.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe----CC---eEEEE---ECC--C
Q 001490          875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ET---HLAIY---EAE--E  942 (1068)
Q Consensus       875 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----d~---~i~vw---d~~--~  942 (1068)
                      ..|+.+.....|.+|++...+......+.+.       +.|..+.++.-|.+|++-+    ..   .+++|   +..  .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            4444446677799999995554333333333       3688999999999999932    12   45654   332  1


Q ss_pred             ceeeeeeccCC---------------------CcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE-EEEeccccccCC
Q 001490          943 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1000 (1068)
Q Consensus       943 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~-~~~~~~~~~~~~ 1000 (1068)
                      ...++....||                     ..++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~  180 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS  180 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence            22222212232                     34556666666433455454 56899998876655 222221112111


Q ss_pred             C-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEeC
Q 001490         1001 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus      1001 ~-~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
                      - .+...+.+.-+++.   ++++|..+ +-.+++.++
T Consensus       181 l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  181 LIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             hhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence            1 12334556667777   35666555 447777765

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.86  E-value=9.1  Score=39.55  Aligned_cols=214  Identities=13%  Similarity=0.141  Sum_probs=123.8

Q ss_pred             cEEEEEEcCCCCcEEEEEEeCCCcEEEEECC------CC-ceeeEecc-----CCCcEEEEeeeecC------Cc----c
Q 001490          419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------NI----H  476 (1068)
Q Consensus       419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~------~~----~  476 (1068)
                      .-+.|+|+|.+.  +-++....+...+||..      .. ..+-++..     .....+.+.|+...      ++    .
T Consensus        24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            457899999987  66666677889999976      12 22333332     12345566554321      11    2


Q ss_pred             EEEEEEcCCcEEEEeCCCCCc-----eEEecCC--CCcEEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCeee--e
Q 001490          477 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R  545 (1068)
Q Consensus       477 ~l~s~s~dg~i~vwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~  545 (1068)
                      .++.+++||+|.-|...-...     ...+...  ..-...+++..  .+.+|..+..   ..++|.++|-.=....  .
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence            468889999999997532222     1222211  22334555543  3566666543   2567888875422211  0


Q ss_pred             EEeccccc--cCC--eE------EEEE---ecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEec----
Q 001490          546 TYQGLQLQ--HNS--VS------VVHF---DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK----  608 (1068)
Q Consensus       546 ~~~~~~~~--~~~--v~------~~~~---~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----  608 (1068)
                      .+......  ..+  |.      -+.|   .++.+.=+.|..-|.|-+||. .|+.++++...+....-+.|+..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            11111000  000  10      1111   122222233445578999997 588888887666666677888766    


Q ss_pred             --CCCEEEEEECCCeEEEEECCCCceeeeccc
Q 001490          609 --NGTLLAVIANENRIKILETPESNSVDAAGV  638 (1068)
Q Consensus       609 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  638 (1068)
                        .|.+|+---.||+|..+|..+++.+..+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence              466777667799999999998887777664

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=93.85  E-value=3.1  Score=48.11  Aligned_cols=185  Identities=12%  Similarity=-0.025  Sum_probs=95.4

Q ss_pred             cCCCEEEEEe-C-----CeEEEEEccCceeEE--EecCCCCCeEEEEEeCCCCCEEEEEECCC--eEEEEEcCCcee--e
Q 001490          788 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV--I  855 (1068)
Q Consensus       788 ~dg~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~--~  855 (1068)
                      .++..+++|+ +     ..+..||..+.+-..  .+....... +++ .- ++.+.++|+.++  .+..||..+++-  +
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3455555554 2     246778877654222  222111122 222 23 788888888643  688888766532  2


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeC
Q 001490          856 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  932 (1068)
Q Consensus       856 ~~~~~h~~~V~~l~~spdg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d  932 (1068)
                      ..+.........+  .-+|+..+.||.++   .+..||..+.+......+....        ....+..-+|+..+.|  
T Consensus       347 ~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--  414 (480)
T PHA02790        347 PSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--  414 (480)
T ss_pred             CCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--
Confidence            2232111111222  23678888888654   4778888776543322222111        1122334566666665  


Q ss_pred             CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECC-----CcEEEEEcCCCcE
Q 001490          933 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV  988 (1068)
Q Consensus       933 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~  988 (1068)
                      |.+.+||..+.+....-...+. +...-+..-+|+..+.||.+     .+|..||..+++.
T Consensus       415 G~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        415 RNAEFYCESSNTWTLIDDPIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             CceEEecCCCCcEeEcCCCCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            3577899887665432111111 11112223477788888754     3466777776654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.85  E-value=20  Score=43.40  Aligned_cols=114  Identities=11%  Similarity=-0.072  Sum_probs=71.4

Q ss_pred             EEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEECCCcEEEEEcCC-CcEEEEeccc
Q 001490          918 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILST  995 (1068)
Q Consensus       918 ~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~~~~~~  995 (1068)
                      .+..|-..+++++....+++||+...+.++.....+ ...|+.+.+  .+..+++|...-.|.++.... ++.+..+. .
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence            455676778888888899999998877776544444 556666665  445677776655555544443 22333333 0


Q ss_pred             cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 001490          996 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1043 (1068)
Q Consensus       996 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~~~~~~~~ 1043 (1068)
                      .       ..+-++.++.+-  |-+.+|.|+.=|.+.+-+++..-...
T Consensus      1016 D-------~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~ 1054 (1205)
T KOG1898|consen 1016 D-------PVPRHVTALELL--DYDTVAGADRFGNIAVVRIPPDVSEE 1054 (1205)
T ss_pred             C-------CccceeeEEEEe--cCCceeeccccCcEEEEECCCcchhh
Confidence            1       111223334333  56889999999999999998765433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.72  E-value=14  Score=41.13  Aligned_cols=149  Identities=8%  Similarity=0.030  Sum_probs=85.8

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEEcCCcee--eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--
Q 001490          822 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--  897 (1068)
Q Consensus       822 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~--  897 (1068)
                      ...+..++ ++.+++.|..-..++-||-  |+.  ...-......++++.|.+++.+++++ .+|.+ +|....+..-  
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence            34456667 7777776654433333432  221  11112234568999999998887755 56654 4444443211  


Q ss_pred             -eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeec--cCCCcCEEEEEEecCCCEEEEEEC
Q 001490          898 -TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV  974 (1068)
Q Consensus       898 -~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~  974 (1068)
                       ....+......    ..+..+.|.+++..++++..|.+.... ..|+.-....  ..-......+.|.++++-+++| .
T Consensus       316 ~~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~  389 (398)
T PLN00033        316 FDFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N  389 (398)
T ss_pred             cceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence             11111111111    147889999999999999988776664 3444332212  2224678899998888777755 7


Q ss_pred             CCcEEEE
Q 001490          975 DGTLSIH  981 (1068)
Q Consensus       975 dg~v~vw  981 (1068)
                      +|.|.-|
T Consensus       390 ~G~il~~  396 (398)
T PLN00033        390 DGVLLRY  396 (398)
T ss_pred             CcEEEEe
Confidence            7876544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.65  E-value=8.9  Score=38.72  Aligned_cols=245  Identities=12%  Similarity=0.115  Sum_probs=142.1

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      .-..|+-+|||. +-.+++..+.|---|-.+|+....                   .-+.......|..-|||..-++-+
T Consensus        63 ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~y-------------------pLg~Ga~Phgiv~gpdg~~Witd~  122 (353)
T COG4257          63 APFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETY-------------------PLGSGASPHGIVVGPDGSAWITDT  122 (353)
T ss_pred             CccccccCCCCc-eEEecCccccceecCCCCCceEEE-------------------ecCCCCCCceEEECCCCCeeEecC
Confidence            567788999997 567888778888889999987643                   234556677788889987666544


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeee
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  471 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~  471 (1068)
                      .. -|.-.|-++.+..+-......-........|.+.|.  +-+++. .|   ++    |    ++            .|
T Consensus       123 ~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~--lWFt~q-~G---~y----G----rL------------dP  175 (353)
T COG4257         123 GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN--LWFTGQ-IG---AY----G----RL------------DP  175 (353)
T ss_pred             cc-eeEEecCcccceEEeecccccCCCcccceeeCCCcc--EEEeec-cc---cc----e----ec------------Cc
Confidence            43 455566666543322212222234566677777776  444443 11   00    0    11            01


Q ss_pred             cCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccc
Q 001490          472 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  551 (1068)
Q Consensus       472 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~  551 (1068)
                      .           .+.|++|+..          .+.....|+..|||..-++.-.    .+.|-..|..++. -..+....
T Consensus       176 a-----------~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasla----gnaiaridp~~~~-aev~p~P~  229 (353)
T COG4257         176 A-----------RNVISVFPAP----------QGGGPYGICATPDGSVWYASLA----GNAIARIDPFAGH-AEVVPQPN  229 (353)
T ss_pred             c-----------cCceeeeccC----------CCCCCcceEECCCCcEEEEecc----ccceEEcccccCC-cceecCCC
Confidence            0           1234445432          2224456777888876665433    3346677776662 22333222


Q ss_pred             cccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCC
Q 001490          552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  630 (1068)
Q Consensus       552 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  630 (1068)
                      ......+.+.-+|.+..-++....+.+..+|..+.. -......+....-.++.....++.-.+--..|.|.-+|-++.
T Consensus       230 ~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         230 ALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             cccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence            112345556667788888888888889999887655 444454444445566666666655554444555655555543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.61  E-value=4.3  Score=39.75  Aligned_cols=158  Identities=11%  Similarity=0.142  Sum_probs=85.3

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcc--CceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC------eEEEE---E
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N  848 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d  848 (1068)
                      +...++-++.+.++++++.+.|.+|++.  ..+...+|..- +.|..++++. .|++|++--.+.      .+|+|   +
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3344555554455555668889999988  44556667644 7899999999 899999854332      55665   2


Q ss_pred             cC--Cceeee-eeccc---------------------ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeee--eee
Q 001490          849 AR--SSEVIS-KLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC--RSL  902 (1068)
Q Consensus       849 ~~--~~~~~~-~~~~h---------------------~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~--~~~  902 (1068)
                      ..  ..+++. ++.||                     +.++.+++..|-..-|+.|+ ++.+.+|.+........  ..+
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l  175 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL  175 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence            22  111111 22222                     23566777777544455455 45599998876432110  011


Q ss_pred             ecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEEC
Q 001490          903 QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  940 (1068)
Q Consensus       903 ~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~  940 (1068)
                      ............+.-...+=-+.++|..++..++|..+
T Consensus       176 DFe~~l~~~~~~~~p~~v~ic~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  176 DFERSLIDHIDNFKPTQVAICEGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             echhhhhheecCceEEEEEEEeeEEEEecCCEEEEEEE
Confidence            11000000000111112222356777777777777665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.53  E-value=0.66  Score=55.45  Aligned_cols=146  Identities=9%  Similarity=0.066  Sum_probs=95.3

Q ss_pred             CCCeeEEEEecCCCEEEEEe--CC-eEEEEEccCceeEE-----EecC------CCCCeEEEEEeCCCCCEEEEEECCCe
Q 001490          778 QEAVPCFALSKNDAYLFSAS--GG-VISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST  843 (1068)
Q Consensus       778 ~~~v~~l~~s~dg~~l~~~~--dg-~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~  843 (1068)
                      .-.+..++..+|+...++..  +| .|..||+.+...-+     -+..      ...-..++.|.|.=-...|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44566777888887766654  33 58999997643322     1111      12244677788743445566778999


Q ss_pred             EEEEEcCCce-eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEee
Q 001490          844 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  922 (1068)
Q Consensus       844 v~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  922 (1068)
                      |++..+.-.. .+..+. ....+++++|+|.|+.++.|-..|++.-|...-....   .+..+....  ..+|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence            9988765332 222323 4566899999999999999999999998876643211   122222111  24799999999


Q ss_pred             CCCEEEE
Q 001490          923 DQTRFLL  929 (1068)
Q Consensus       923 dg~~la~  929 (1068)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888887

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.51  E-value=3.2  Score=39.88  Aligned_cols=175  Identities=14%  Similarity=0.106  Sum_probs=94.5

Q ss_pred             CCCEEEEEe---CCeEEEEEccCceeEEEecCCCCCeE--EEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeeccccc
Q 001490          789 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  863 (1068)
Q Consensus       789 dg~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~  863 (1068)
                      +|+++.+.+   ...|++||+.+++.+..-.-....+-  .+.-.  +..+.+-.-.+|.-.+||..+.+++..+. ..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence            556666655   35699999999988766543322221  11111  23344455678889999999988877665 334


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCC
Q 001490          864 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE  942 (1068)
Q Consensus       864 ~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~  942 (1068)
                      .=+.++  .|++-|..++...+++.-|.++-..... +.-+..+...  ..+..+.| -||...|- -....|...+.++
T Consensus       132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~-v~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~p~s  205 (262)
T COG3823         132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDT-VQVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARIDPDS  205 (262)
T ss_pred             cceeee--cCCcceEeeCCceEEEecCHHHhhhcce-EEEEECCeec--ccccceee-eccEEEEeeeeecceEEEcCCC
Confidence            344444  3666677766666777766655322221 1111111111  01122222 13443332 2444555556666


Q ss_pred             ceeeeee-----------ccCCCcCEEEEEEecCC-CEEEEE
Q 001490          943 LTCLKQW-----------FPISSVPISQATFSCDC-RMVFTS  972 (1068)
Q Consensus       943 ~~~~~~~-----------~~~h~~~v~~l~fs~dg-~~l~t~  972 (1068)
                      |+.+.-+           ...|..-...+++.|++ ++++||
T Consensus       206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6554321           12234566788999987 566655

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=11  Score=38.63  Aligned_cols=151  Identities=13%  Similarity=0.099  Sum_probs=92.0

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEccCceeEEEecC--CCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc---e
Q 001490          780 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---E  853 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~  853 (1068)
                      -+..+.++.  +++..+. +..++|.|+.+......+..  ..+...++..   .|++..++..|.-+.+.|+.+.   +
T Consensus        88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCce
Confidence            344555644  4555665 46699999987655443322  2244455666   4678887886666788888764   3


Q ss_pred             eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCC
Q 001490          854 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  933 (1068)
Q Consensus       854 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~  933 (1068)
                      +..++......-..++.|  |++-..+..|+-+.|-|+.......      +.++....+.+.++..|++-.+++...+ 
T Consensus       163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPv------li~~~n~g~g~~sv~vsdnr~y~vvy~e-  233 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPV------LIGSYNTGPGTYSVSVSDNRAYLVVYDE-  233 (370)
T ss_pred             eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCe------EEEEEecCCceEEEEecCCeeEEEEccc-
Confidence            445555445545667776  6677777889999999999854332      2222222235677777777766665433 


Q ss_pred             eEEEEECCCce
Q 001490          934 HLAIYEAEELT  944 (1068)
Q Consensus       934 ~i~vwd~~~~~  944 (1068)
                      .+.+-|..+..
T Consensus       234 gvlivd~s~~s  244 (370)
T COG5276         234 GVLIVDVSGPS  244 (370)
T ss_pred             ceEEEecCCCC
Confidence            34455554433

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.33  E-value=1.9  Score=47.92  Aligned_cols=149  Identities=13%  Similarity=0.047  Sum_probs=83.0

Q ss_pred             CCeEEEEEeCCCCCEEEEEE-----------CCC-eEEEEEcCC--ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001490          820 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD  883 (1068)
Q Consensus       820 ~~i~~l~~s~~d~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~spdg~~l~s~s~d  883 (1068)
                      .....|+|.+ +|+++++-.           ..+ .|.+++-.+  |+  ....+.........+++.++| +++ ++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            3557889998 788777642           223 777776543  32  223443334456889999998 444 4444


Q ss_pred             CcEEEEECCCCc-e--eeeeeeecCCCc-ccCCCCceEEEEeeCCCEEEE-EeC-------------------CeEEEEE
Q 001490          884 AQIFVWDVDGWG-I--QTCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE  939 (1068)
Q Consensus       884 g~i~iwd~~~~~-~--~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~-~~d-------------------~~i~vwd  939 (1068)
                      ...++.|.+... .  ....++..+... .........++|.|||.+.++ +..                   +.+.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            433344544321 1  111222322221 001124678999999988776 411                   3466666


Q ss_pred             CCCceeeeeeccCCCcCEEEEEEecCCCEEEEEE
Q 001490          940 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  973 (1068)
Q Consensus       940 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  973 (1068)
                      ..+++. ..+..+ -.....++|+++|+++++-.
T Consensus       171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence            655443 222333 34456899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.15  E-value=2.7  Score=45.25  Aligned_cols=146  Identities=8%  Similarity=0.040  Sum_probs=88.2

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCc--e-eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 001490          821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  897 (1068)
Q Consensus       821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~  897 (1068)
                      ..+.+-|.. .++.|. +...|.+.=|-....  . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+..
T Consensus        24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            345566654 333433 333444555544321  1 22222235679999999999999999999999999998654322


Q ss_pred             eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEE
Q 001490          898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  973 (1068)
Q Consensus       898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  973 (1068)
                      .........+.    ..|....|+.. .-+|...+..+.+|-.............|...|.-..|.++.+.++-++
T Consensus       102 l~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  102 LEYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hHHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            11111111111    24778888776 6677777777778776544333334556777888888888887654443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.08  E-value=29  Score=42.87  Aligned_cols=172  Identities=14%  Similarity=0.147  Sum_probs=101.1

Q ss_pred             CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEccCc---------------eeEEEecC---CCCCeEEEEEeCCC
Q 001490          777 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD  831 (1068)
Q Consensus       777 ~~~~v~~l~~s---~----dg~~l~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d  831 (1068)
                      ...+|..|+|+   .    ..++|++-....+.|+...-.               .++..+..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46688888887   2    235788777888888873211               12223321   22355678888877


Q ss_pred             CCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccC
Q 001490          832 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  911 (1068)
Q Consensus       832 ~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  911 (1068)
                      .+.+|+.+..|...||++..+...     +. ....          +.....|.| +.|...-                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~~~----------~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SNLR----------LSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEecccccc-----CC-ccee----------eccCCCccc-cCCCccc-----------------
Confidence            778888888888888888221110     00 1111          111122222 2222210                 


Q ss_pred             CCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeee-eeccCCCcCEEEEEEecC--CCEEEEEECCCcEEEEEcCC
Q 001490          912 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHEASN  985 (1068)
Q Consensus       912 ~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~l~fs~d--g~~l~t~~~dg~v~vwd~~~  985 (1068)
                       ..-..+.|.++-..|++.....+.++|+++..... .........|..+.-+++  +..++-  ....|...++..
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~  277 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS  277 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence             12446888889888999888999999998776643 222334577888888887  322222  235677777776

These proteins are found in fungi.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.07  E-value=6  Score=48.86  Aligned_cols=159  Identities=17%  Similarity=0.157  Sum_probs=100.1

Q ss_pred             CCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEE--------cCCCCEEEEEeCCCcEEEEECCCCceeeee-e
Q 001490          831 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCR-S  901 (1068)
Q Consensus       831 d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~--------spdg~~l~s~s~dg~i~iwd~~~~~~~~~~-~  901 (1068)
                      =++.-+  +-|+.+.+|+..++.....+.+-+..|..|..        -|.=++++..+.--.|.++-+.-.+..... .
T Consensus        90 I~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   90 IGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             hcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence            344444  34788999999998777888877777777654        333355555555666777766433322111 0


Q ss_pred             eecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEE--EECCCc---e-e----------------eeeeccCCCcCEEE
Q 001490          902 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-C----------------LKQWFPISSVPISQ  959 (1068)
Q Consensus       902 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~v--wd~~~~---~-~----------------~~~~~~~h~~~v~~  959 (1068)
                      +...-.....+..|.++....+|+.+.+|.||.++=  |...+|   + +                +..+...+..+|..
T Consensus       168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  168 FNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             cccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence            111100001123588999899999999999985542  333322   1 1                01112245779999


Q ss_pred             EEEecCCCEEEEEECCCcEEEEEcCC-CcEEEE
Q 001490          960 ATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR  991 (1068)
Q Consensus       960 l~fs~dg~~l~t~~~dg~v~vwd~~~-~~~~~~  991 (1068)
                      ++....-..|.+-+..|+|++|++.. |....+
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r  280 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR  280 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccCCCcccee
Confidence            99988888999999999999999997 544333

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.98  E-value=1.1  Score=47.95  Aligned_cols=159  Identities=9%  Similarity=0.077  Sum_probs=98.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEccCceeE-EEec-CCCC----CeE-EEEEeCCCCCEEEEEECCCeEEEE-E
Q 001490          777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N  848 (1068)
Q Consensus       777 ~~~~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d  848 (1068)
                      ....+..+-..|||+.+.+-+...+.++++.+.... +.+. ...+    .|+ ++..-. +|.-|.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            456778889999999999988889999988754322 1221 1111    122 222233 67778889999988777 4


Q ss_pred             cCCc-e----eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeC
Q 001490          849 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  923 (1068)
Q Consensus       849 ~~~~-~----~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  923 (1068)
                      ...+ .    .++.++-...++..+.--.+.+-+++-+..|++.++.-...+.   ...+...      ..+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~~~~------~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFERAY------QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehhhhh------cCcceeeeCcc
Confidence            4432 2    1222222223344333333446677778888888776544221   1111111      13667999999


Q ss_pred             CCEEEEEeCCeEEEEECCCcee
Q 001490          924 QTRFLLVHETHLAIYEAEELTC  945 (1068)
Q Consensus       924 g~~la~~~d~~i~vwd~~~~~~  945 (1068)
                      +.+|++-..+.++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998889999999876543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.96  E-value=13  Score=38.53  Aligned_cols=240  Identities=12%  Similarity=0.113  Sum_probs=121.8

Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEECCCC-------ceeeeccc-----cccceeeeEEcCCccccccccccCeeeecC
Q 001490          601 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE  668 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1068)
                      -+.++++|.+.+-++....+...+||....       ..+..+..     .....+.+.|+.....          .+..
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F----------~vt~   94 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTF----------VVSG   94 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCce----------EEcC
Confidence            478999999988888888899999998611       12222221     1123334444322211          1111


Q ss_pred             CCCCCcccceeecccccceeecccccCCcccc-eeecCCccccccEEEEEEec--CCceEEEeec-CccEEEEeccCCcc
Q 001490          669 DPKEDVKPEISVEAENKSEVEKPLFARPSECQ-SLLLPSKVKANKISRLTYNN--GGQAIFALAS-NGVHLMWRWPRNDL  744 (1068)
Q Consensus       669 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~i~~l~~s~--~g~~l~~~~~-dg~i~iw~~~~~~~  744 (1068)
                      ........++.+++||+|.-|........... .+.+.......--+.+++..  .+.+|.++.- +++|.++|-.-...
T Consensus        95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~  174 (336)
T TIGR03118        95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP  174 (336)
T ss_pred             CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence            11112234678899999999995433331001 11111111122233444442  3455554433 57777776443322


Q ss_pred             CCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE-------------E-eCCeEEEEEccCce
Q 001490          745 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS-------------A-SGGVISLYIVMTFK  810 (1068)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~-------------~-~dg~i~iwd~~~~~  810 (1068)
                      ...+...        |+.         ++   -......+..- .+++.++             + .-|.|-+||+. |+
T Consensus       175 ~~~g~F~--------DP~---------iP---agyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~  232 (336)
T TIGR03118       175 PLPGSFI--------DPA---------LP---AGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQ  232 (336)
T ss_pred             cCCCCcc--------CCC---------CC---CCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-Cc
Confidence            1111111        110         00   00001111110 1122111             1 13679999986 77


Q ss_pred             eEEEecC--CCCCeEEEEEeC-----CCCCEEEEEECCCeEEEEEcCCceeeeeeccccc------CeEEEEEcC
Q 001490          811 TILTIMP--PSPTATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------RVTGLVFSD  872 (1068)
Q Consensus       811 ~~~~~~~--~~~~i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~------~V~~l~~sp  872 (1068)
                      .++++..  .-..-..|+..|     -.+.+|+---.||+|-.||..+|+.+..+....+      ..+.|+|-.
T Consensus       233 l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       233 LLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            7777642  223445566544     2577888777899999999999998877765333      245566643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.81  E-value=0.17  Score=58.38  Aligned_cols=131  Identities=15%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             cccCCCCceEEEEc----CCCCeEEEEEcCcCcEEEEecC--CCcceeeeeeeeeeccccccceeeeeecCCCcceEEEE
Q 001490          306 LIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVN--SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       306 l~~h~~~V~~v~~s----pdg~~lla~gs~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~  379 (1068)
                      ++|-+++|-.++|-    |.+. .++     |...|||+.  .|+......+.+              ...-...+.-|.
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~-~~v-----g~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR-RLV-----GELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVS  187 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH-HHh-----hhhheeehHhhccccccceEEee--------------cCcCCCCcceee
Confidence            44666778888883    4443 112     788999985  455443322221              122233444455


Q ss_pred             EC---CCCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEE-----------cCCCCcEEEEEEeCCCcEEE
Q 001490          380 WS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIKV  445 (1068)
Q Consensus       380 ~s---pdg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~-----------s~d~~~~~l~s~~~d~~i~i  445 (1068)
                      |.   ++..++..+..+++|++..+++...  .  .+.+|...+..++|           ||||+  .++.+..||.++.
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f  261 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGF  261 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccce
Confidence            54   4677888888888888877766432  1  24468777766654           88999  8999999998888


Q ss_pred             EECC-----CCceeeEeccCCC
Q 001490          446 WDAV-----TGSRTYSFEGHGA  462 (1068)
Q Consensus       446 wd~~-----~~~~~~~~~~h~~  462 (1068)
                      |-+.     .-++++..+.|.+
T Consensus       262 ~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  262 YQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             eeeeeeccccHhhhhccCCCCC
Confidence            7653     2345566666763

>PHA02790 Kelch-like protein; Provisional

Probab=92.09  E-value=7.9  Score=44.77  Aligned_cols=182  Identities=10%  Similarity=-0.019  Sum_probs=94.6

Q ss_pred             CCCEEEEEECCC-----eEEEEEcCCceee--eeecccccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeeeee
Q 001490          831 DNNVIAIGMDDS-----TILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRS  901 (1068)
Q Consensus       831 d~~~lasg~~dg-----~v~iwd~~~~~~~--~~~~~h~~~V~~l~~spdg~~l~s~s~d--g~i~iwd~~~~~~~~~~~  901 (1068)
                      ++.++++|+.++     .+..||..+++-.  ..+.........+  .-+|+..+.||.+  ..+..||..+++......
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            567777787653     5777888775432  2222111112222  2367788888764  357888876654322222


Q ss_pred             eecCCCcccCCCCceEEEEeeCCCEEEEE-eC---CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc
Q 001490          902 LQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT  977 (1068)
Q Consensus       902 ~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~  977 (1068)
                      +...        .....+..-+|+..++| .+   ..+..||..+.+....-...... -...+..-+|+..+.|   |.
T Consensus       349 l~~~--------r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r-~~~~~~~~~~~IYv~G---G~  416 (480)
T PHA02790        349 LLKP--------RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH-YKSCALVFGRRLFLVG---RN  416 (480)
T ss_pred             CCCC--------CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc-ccceEEEECCEEEEEC---Cc
Confidence            2111        11223334567766664 22   35788998876654321111111 1122234567666666   45


Q ss_pred             EEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEeCC
Q 001490          978 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPN 1037 (1068)
Q Consensus       978 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~d-----g~i~~w~~~ 1037 (1068)
                      +.+||..+++.... .   ..+..    ... .+++..  ++.++++||.+     ..+..||..
T Consensus       417 ~e~ydp~~~~W~~~-~---~m~~~----r~~-~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        417 AEFYCESSNTWTLI-D---DPIYP----RDN-PELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             eEEecCCCCcEeEc-C---CCCCC----ccc-cEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence            78899988766522 1   11211    011 122222  46888888865     356777764

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=91.95  E-value=25  Score=39.58  Aligned_cols=63  Identities=16%  Similarity=0.094  Sum_probs=41.0

Q ss_pred             ccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-CcEEEEeeeecCCccEEEEEEcCC
Q 001490          416 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDG  485 (1068)
Q Consensus       416 h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~l~s~s~dg  485 (1068)
                      ...+|..+.+...|.   +..|+.|| +..||..+++.++.-.... .+|..+....  .| .|..|+.+|
T Consensus       163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--qg-~LWVGTdqG  226 (671)
T COG3292         163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--QG-RLWVGTDQG  226 (671)
T ss_pred             cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--cC-cEEEEeccc
Confidence            456788999998886   66678777 7778888888776543333 4555554332  22 466666665

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.91  E-value=26  Score=39.56  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             cccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCC
Q 001490          306 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  384 (1068)
Q Consensus       306 l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg  384 (1068)
                      +...-+..+.|+|.|||+ ++++--..|.|++++-.++.......+            ..............|+|+|+-
T Consensus        25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence            344445789999999996 666654459999998665542211111            110011136778999999884

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.78  E-value=5.4  Score=46.93  Aligned_cols=174  Identities=13%  Similarity=0.102  Sum_probs=91.9

Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEE
Q 001490          790 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  869 (1068)
Q Consensus       790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~  869 (1068)
                      +.+++++..+.|.||+........    ...+...+...|   ..  +...|+.+..|.          ..|.  |+.|.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~  107 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK  107 (717)
T ss_pred             CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence            788999999999999986432211    001111222222   11  122333333332          0121  22222


Q ss_pred             E--cCCCCEEEEEeCCCcEEEEECCCCc-----------eeeeeeeecCCCcccCCCCceEEEEe--eCCCEEEEEeCC-
Q 001490          870 F--SDALNILVSSGGDAQIFVWDVDGWG-----------IQTCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-  933 (1068)
Q Consensus       870 ~--spdg~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~la~~~d~-  933 (1068)
                      .  --+...|+.+.+||.|.+|.+++--           ....+....+.-+........++++.  ...++||++.++ 
T Consensus       108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~  187 (717)
T PF08728_consen  108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ  187 (717)
T ss_pred             ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence            2  2244667777888888888653200           00000000011111122457889998  888889987654 


Q ss_pred             eEEEEECCC--ceeeeeeccCCCcCEEEEEEecCC---C---EEEEEECCCcEEEEEcC
Q 001490          934 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS  984 (1068)
Q Consensus       934 ~i~vwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~dg~v~vwd~~  984 (1068)
                      .|.||-...  .+....--..|...|.+++|-++.   .   +|++++-.|.+.+|++.
T Consensus       188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            455554432  222211112356789999998754   2   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.72  E-value=16  Score=42.43  Aligned_cols=165  Identities=12%  Similarity=0.128  Sum_probs=78.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCcEEEEEEccCCCcccce-EEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001490          374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  452 (1068)
Q Consensus       374 ~V~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~-~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  452 (1068)
                      .+..+.|+.+..+|+ ...+|+++||++-... +... .........|..+.|...|=  .+.+  .+|.+.+-+-....
T Consensus        85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~  158 (829)
T KOG2280|consen   85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEP  158 (829)
T ss_pred             CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcc
Confidence            788999998776655 5699999999987532 2110 01122333466666666553  3333  34444443312111


Q ss_pred             eeeEecc-CCCcEEEEeeeecCC---ccEEEEEEcCCcEEEEeCCCCC-ceEEecCCCCcEEEEEEccCCCEEEEEeeCC
Q 001490          453 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  527 (1068)
Q Consensus       453 ~~~~~~~-h~~~v~~i~~~~~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~  527 (1068)
                      .+++++. ........||.-..+   ...++-....--..++-..... ....+......+..+++||+.++|+.-..  
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~--  236 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE--  236 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec--
Confidence            2222221 111111122221111   1111111100000111111111 11222223457788999999999988765  


Q ss_pred             CCceeEEEEeCCCCeeeeEEe
Q 001490          528 EGESFLVEWNESEGAIKRTYQ  548 (1068)
Q Consensus       528 ~~~~~i~~wd~~~~~~~~~~~  548 (1068)
                        .|.|.+-+.+..+....+.
T Consensus       237 --~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  237 --TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             --CCcEEEEecchhhhhhccC
Confidence              4457777776666655555

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.64  E-value=0.49  Score=32.59  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=27.0

Q ss_pred             CCceEEEEcCCCC--eEEEEEcCcCcEEEEecCCC
Q 001490          311 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG  343 (1068)
Q Consensus       311 ~~V~~v~~spdg~--~lla~gs~dg~v~iwd~~~~  343 (1068)
                      +.|.+++|||+..  -||+..-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999997554  48888888899999999863

It contains a characteristic DLL sequence motif.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.62  E-value=26  Score=39.02  Aligned_cols=150  Identities=9%  Similarity=-0.007  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCce
Q 001490          865 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT  944 (1068)
Q Consensus       865 V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~  944 (1068)
                      ...+..++||.+++.+..-..++-||-....   ...+.....     ..+..+.|.++|.+++++..|.+.. ....+.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            4456677888877765544333334433210   011222211     2578999999999999888777544 334443


Q ss_pred             -----eeeeeccC-CCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccceEEEECCCC
Q 001490          945 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1018 (1068)
Q Consensus       945 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 1018 (1068)
                           ........ ....+..+.|.+|+..+++ +..|.+... .+.|+.-.........+.     .+|  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence                 12211111 1345889999988876664 577876655 455544333221111111     233  677765  


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001490         1019 PTQFAVGLTNGEVYVI 1034 (1068)
Q Consensus      1019 ~~~l~~~~~dg~i~~w 1034 (1068)
                      .+...+.+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            3567777778887655

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.45  E-value=1.2  Score=47.83  Aligned_cols=122  Identities=11%  Similarity=0.153  Sum_probs=80.9

Q ss_pred             CCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEE
Q 001490          310 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  389 (1068)
Q Consensus       310 ~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las  389 (1068)
                      +++|.++.||||.+ ++|+--.+++|.+.+....+.....+.+               ....+..|....|+.+ .-+|.
T Consensus        66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~  128 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF  128 (657)
T ss_pred             CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence            45999999999998 8899999999999998543332211100               1223456889999866 66777


Q ss_pred             EeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCC
Q 001490          390 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  451 (1068)
Q Consensus       390 ~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~  451 (1068)
                      ....| +.+|-+...+  +..+..+.|...|..-.|.++.+-.+|+++-..+++.=+-+.++
T Consensus       129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            76666 7788765533  22224557888999999999988544444434444444444443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.23  E-value=21  Score=38.81  Aligned_cols=112  Identities=9%  Similarity=-0.021  Sum_probs=57.1

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCcee-eeeeeecCCCcccCCCCceEEEEeeCCCEEEEEe------CCeEEEEEC
Q 001490          873 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA  940 (1068)
Q Consensus       873 dg~~l~s~s~dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~------d~~i~vwd~  940 (1068)
                      ++++++.|+.++     .+..+|+.+.+.. ....+......     .....+..-++++.+.+.      ...+..||+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence            566777777643     4666777664421 11111111110     111122234566666543      236888998


Q ss_pred             CCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCc----EEEEEcCCCcEE
Q 001490          941 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ  989 (1068)
Q Consensus       941 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~----v~vwd~~~~~~~  989 (1068)
                      .+.+....-......+....+...+++..+.|+.++.    +.+||..+.+..
T Consensus       147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            8765433211111122233344567788888877643    567888877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.09  E-value=0.19  Score=58.07  Aligned_cols=228  Identities=16%  Similarity=0.153  Sum_probs=118.6

Q ss_pred             CeEEEEEcc--CceeEEE-----ecCCCCCeEEEEEeCC--CCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEE
Q 001490          799 GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  869 (1068)
Q Consensus       799 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~  869 (1068)
                      |.+.||++.  .|+....     .......+.-+.|.|.  +..++..+..+++|++....+... ..+.+|...++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            667888875  3433222     2222233344444331  557888888889998877665332 45566776665544


Q ss_pred             -----------EcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC-------CE--EEE
Q 001490          870 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-------TR--FLL  929 (1068)
Q Consensus       870 -----------~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-------~~--la~  929 (1068)
                                 .||||+.+|.++.||.++.|.+.-......+++...+.|..  .+-.|.-|....       .+  +++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence                       58999999999999999999876433333445544444432  122222243332       22  233


Q ss_pred             EeC--CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC------------EEEEEECCCcEEEEEcCCCcEEEEeccc
Q 001490          930 VHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEASNLEVQCRILST  995 (1068)
Q Consensus       930 ~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~------------~l~t~~~dg~v~vwd~~~~~~~~~~~~~  995 (1068)
                      +.|  ..+++|....-+|+....   ...|..+. -+||+            .+++-+-|++|.+|.-..-...-...++
T Consensus       310 ttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~  385 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPH  385 (1283)
T ss_pred             cccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhh
Confidence            333  458888877666652211   12333333 22332            1334456777877754432221111111


Q ss_pred             cccCCCCccCcccceEEEECCC--CCCEEEEEeC-CCcEEEEeCCCCC
Q 001490          996 AYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLT-NGEVYVIEPNEPG 1040 (1068)
Q Consensus       996 ~~~~~~~~~~~~~~~~~~~~p~--~~~~l~~~~~-dg~i~~w~~~~~~ 1040 (1068)
                      .       +.++.+....-+|.  +...+++|+. +..+.+|..--++
T Consensus       386 ~-------~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~  426 (1283)
T KOG1916|consen  386 D-------GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEE  426 (1283)
T ss_pred             h-------cceeccccccccCCCccccccccCCcchhhhhhhhhcccc
Confidence            1       22233323333431  2234555554 4467788775444

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.95  E-value=13  Score=40.37  Aligned_cols=151  Identities=12%  Similarity=0.119  Sum_probs=84.8

Q ss_pred             CCCeEEEEEeCCCCCEEEEEECCCe------EEEEEcCC--c--ee-----eeeeccccc--------CeEEEEEcCCCC
Q 001490          819 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EV-----ISKLEGHSK--------RVTGLVFSDALN  875 (1068)
Q Consensus       819 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~-----~~~~~~h~~--------~V~~l~~spdg~  875 (1068)
                      -+.+..+++.++++ .+++.+++|.      ++.+++..  +  ..     ...+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            35678899987345 4555666776      66665543  1  11     111111111        234788888898


Q ss_pred             EEEEEeCC------CcEEEEECCCCceeeeeeeecCC-------CcccCCCCceEEEEeeCCCEEEEE------eCC---
Q 001490          876 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET---  933 (1068)
Q Consensus       876 ~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~spdg~~la~~------~d~---  933 (1068)
                      ++++.-.+      ..|+.++.. +.......+...-       ..........+++++|||+.|.+.      .|+   
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88887667      778778766 4432221111110       112223578999999999955442      222   


Q ss_pred             --------eEEEEECCC-ceeeeee---ccC-----CCcCEEEEEEecCCCEEEE
Q 001490          934 --------HLAIYEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFT  971 (1068)
Q Consensus       934 --------~i~vwd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t  971 (1068)
                              .+..||..+ +....++   ...     ....|+.+.+.+|+++|+-
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                    234455554 3222221   111     3578899999999997763

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.83  E-value=2.7  Score=50.66  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=89.3

Q ss_pred             cEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCcee-----eEecc----CCCc--EEEEeeeecCCccEEEEEEcCCcE
Q 001490          419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HGAP--VYSLCPHAKENIHFIFSISVDGKI  487 (1068)
Q Consensus       419 ~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~----h~~~--v~~i~~~~~~~~~~l~s~s~dg~i  487 (1068)
                      +|..+...+|+....++..+.+-.|..||+++-..-     .-|..    ....  ..++.|.|... ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            566777778877545555566567899998743211     11111    1222  23344544322 245666778888


Q ss_pred             EEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccc-cCCeEEEEEecCC
Q 001490          488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK  566 (1068)
Q Consensus       488 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~  566 (1068)
                      ++..+........-.......++++|+|.|+.+++|-.    .+++.-|.. +.+....+.+.... ...|.+++|-...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence            88765543333332233446899999999999999865    456776664 34444455444322 3779999998877


Q ss_pred             CEEEE
Q 001490          567 DQILA  571 (1068)
Q Consensus       567 ~~l~~  571 (1068)
                      .++++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            77665

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.69  E-value=0.82  Score=31.13  Aligned_cols=32  Identities=9%  Similarity=0.198  Sum_probs=23.2

Q ss_pred             ccCCCCceEEEEcCCCCeEEEEEcCc--CcEEEE
Q 001490          307 IEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW  338 (1068)
Q Consensus       307 ~~h~~~V~~v~~spdg~~lla~gs~d--g~v~iw  338 (1068)
                      ......-...+|||||++++.++..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34445678899999999888888777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.41  E-value=27  Score=37.06  Aligned_cols=167  Identities=11%  Similarity=0.077  Sum_probs=90.0

Q ss_pred             cEEEEECCCCceeeEecc------CCCcEEEEeeeecCC----ccEEEEEEcCCcEEEEeCCCCCceEEecCCC------
Q 001490          442 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------  505 (1068)
Q Consensus       442 ~i~iwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~------  505 (1068)
                      .|.+||+.+++.++++.-      ....+..+.+...+.    +...++-+..+-|.++|+.+++.........      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            578899999998877643      245667777765332    2233344445679999998876544332211      


Q ss_pred             -------------CcEEEEEEcc---CCCEEEEEeeCCCCceeEEEEeCCCC-----e---------eeeEEeccccccC
Q 001490          506 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEG-----A---------IKRTYQGLQLQHN  555 (1068)
Q Consensus       506 -------------~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~~-----~---------~~~~~~~~~~~~~  555 (1068)
                                   ..+..++.+|   +++.|....-.+     -.+|-+.+.     .         .++.+ +..  ..
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~  186 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS  186 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence                         1255566655   666666554322     122222211     0         11111 211  13


Q ss_pred             CeEEEEEecCCCEEEEEECCCeEEEEEcCCC---eEEEEE-eCCCCCCCCceEEEec--CCCEEEEE
Q 001490          556 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTI-DAGGGLPENPRICFNK--NGTLLAVI  616 (1068)
Q Consensus       556 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~-~~~~~~~~v~~v~~s~--~~~~l~~~  616 (1068)
                      ....++++++|..+++--+.+.|..|+..+.   +....+ ........+..+.+.+  +|.+.+..
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            5667889999988888889999999998861   122222 2222234456777777  66554443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.93  E-value=36  Score=37.85  Aligned_cols=202  Identities=17%  Similarity=0.146  Sum_probs=105.9

Q ss_pred             CCCEEEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  462 (1068)
Q Consensus       383 dg~~las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  462 (1068)
                      ||+.+ ++..+|.|.-.|.+++..+-..... .....+..-.+..+|+   ++.++.++.++.+|..+|+.+........
T Consensus        68 dg~v~-~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          68 DGTVY-VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             CCeEE-EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            44433 3456777777777776532111011 1112223333333776   77788889999999889999887765551


Q ss_pred             -cEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCC---CcEEEEEEccCCCEEEEEeeCCCCceeEEEEeC
Q 001490          463 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       463 -~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~  538 (1068)
                       .+..-.+.   ....+..++.++.+...+..++..........   ..+..-....++...+ +..+ . ++.+.-.|.
T Consensus       143 ~~~~~~~v~---~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~-~~~~-~-~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVV---GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYV-GSDG-Y-DGILYALNA  216 (370)
T ss_pred             eEEecCcEE---cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEE-ecCC-C-cceEEEEEc
Confidence             11111111   12244444477888888887777766544432   1111111122333333 2221 1 335777788


Q ss_pred             CCCeeeeEEecccccc-CCeEEE-EEec----CCCEEEEEECCCeEEEEEcCCCeEEEEEeCC
Q 001490          539 SEGAIKRTYQGLQLQH-NSVSVV-HFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~-~~v~~~-~~~~----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                      .+|...-......... ..+... .+..    .+..++.++.++.+...|..+++.+-.....
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            7887765543222000 001000 0100    1223466778888999999999998887754

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=89.74  E-value=47  Score=38.85  Aligned_cols=80  Identities=10%  Similarity=0.168  Sum_probs=47.5

Q ss_pred             CCEEEEEeCCeEEEEEccCceeEEEecCCC-CCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeec-----cccc
Q 001490          790 DAYLFSASGGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK  863 (1068)
Q Consensus       790 g~~l~~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~-----~h~~  863 (1068)
                      +..++-.....|++.+...++......... ..|.+.+..   +..++.+..++.+..+.+..........     ....
T Consensus       418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (504)
T PF10433_consen  418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN  494 (504)
T ss_dssp             TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred             CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence            566666667779999988877776654433 355555554   3566777778999999888765432221     1457


Q ss_pred             CeEEEEEcC
Q 001490          864 RVTGLVFSD  872 (1068)
Q Consensus       864 ~V~~l~~sp  872 (1068)
                      .|.|+...|
T Consensus       495 eis~l~i~p  503 (504)
T PF10433_consen  495 EISCLSIEP  503 (504)
T ss_dssp             -EEEEE---
T ss_pred             ceEEEEeCC
Confidence            788887766

...

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.61  E-value=39  Score=37.71  Aligned_cols=40  Identities=8%  Similarity=-0.026  Sum_probs=19.8

Q ss_pred             EEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECC
Q 001490          578 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  619 (1068)
Q Consensus       578 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  619 (1068)
                      +.+||.++.+....-..+.  ......+..-++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence            4578887765432222111  111223444456777777653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.53  E-value=21  Score=34.59  Aligned_cols=172  Identities=15%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             EEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEE
Q 001490          433 SVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  510 (1068)
Q Consensus       433 ~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~  510 (1068)
                      ++.+.+.-|  .|++||+.+|+.+.+-+-....+..=-....+| .+-.-.-.+|.-..+|.++.++.-.+...+.. . 
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W-  134 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W-  134 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence            566655433  699999999998865543211121111111111 23334456778888888887776655444322 2 


Q ss_pred             EEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEE----eccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001490          511 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  586 (1068)
Q Consensus       511 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  586 (1068)
                       ....|++.|+.+.    |..+++.-|.++.....+.    .+..  ...++.+.|- +|...+-.-.+..|...+.++|
T Consensus       135 -gLt~d~~~Limsd----GsatL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG  206 (262)
T COG3823         135 -GLTSDDKNLIMSD----GSATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELEWV-DGELYANVWQTTRIARIDPDSG  206 (262)
T ss_pred             -eeecCCcceEeeC----CceEEEecCHHHhhhcceEEEEECCee--cccccceeee-ccEEEEeeeeecceEEEcCCCC
Confidence             2335666666543    3557888787765443333    2222  2334444443 4444443445566777788888


Q ss_pred             eEEEEEeCCC----------CCCCCceEEEecCCCEEEE
Q 001490          587 QLLTTIDAGG----------GLPENPRICFNKNGTLLAV  615 (1068)
Q Consensus       587 ~~~~~~~~~~----------~~~~v~~v~~s~~~~~l~~  615 (1068)
                      +.+..+...+          +..-.+.+++.|++..+..
T Consensus       207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i  245 (262)
T COG3823         207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI  245 (262)
T ss_pred             cEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence            8776665322          2223567888887744443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=89.46  E-value=35  Score=37.06  Aligned_cols=70  Identities=7%  Similarity=-0.103  Sum_probs=35.4

Q ss_pred             CccEEEEEEcC-----CcEEEEeCCCCCceEEecCC-CCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCee
Q 001490          474 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  543 (1068)
Q Consensus       474 ~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~  543 (1068)
                      ++.+.+.|+..     ..+..||+.+.+=...-... .......+...+++..+.++.++.....+..||+.+.+-
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            44566666542     35777777654422211111 112222333456677777665432223467889887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.36  E-value=1.3  Score=30.50  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             cceEEEEECCCC---CEEEEEeCCcEEEEEEccCC
Q 001490          373 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG  404 (1068)
Q Consensus       373 ~~V~~~~~spdg---~~las~~~d~~i~vwd~~~~  404 (1068)
                      +.|.++.|||+.   .+||.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368999999854   58888888899999999863

It contains a characteristic DLL sequence motif.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.35  E-value=5  Score=49.55  Aligned_cols=173  Identities=14%  Similarity=0.180  Sum_probs=99.6

Q ss_pred             cCCCccceeeecccCCCCceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcc
Q 001490          295 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  374 (1068)
Q Consensus       295 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~  374 (1068)
                      +..+|..++..+. |...-..+-+-|.=.+  |--+.|+.+.+|+.+++.....                   +.+-+..
T Consensus        64 v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sht  121 (1311)
T KOG1900|consen   64 VVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSHT  121 (1311)
T ss_pred             cccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhhh
Confidence            3455666665555 3333344444444332  4446679999999998665543                   3334444


Q ss_pred             eEEEE--------ECCCCCEEEEEeCCcEEEEEEccCCCcccce------EEEccccccEEEEEEcCCCCcEEEEEEeCC
Q 001490          375 VNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDD  440 (1068)
Q Consensus       375 V~~~~--------~spdg~~las~~~d~~i~vwd~~~~~~~~~~------~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d  440 (1068)
                      |..|.        |-|.=++|.+...--.|.++-+.-.+.....      ..+....-.|.|+....+|+  +++ +|.|
T Consensus       122 Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~d  198 (1311)
T KOG1900|consen  122 ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRD  198 (1311)
T ss_pred             heeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecC
Confidence            54444        3444556655555556777655433221111      12223355789999888998  455 5556


Q ss_pred             CcEEE--EECCCC---c-e----------------eeEec-cCCCcEEEEeeeecCCccEEEEEEcCCcEEEEeCCC
Q 001490          441 KTIKV--WDAVTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  494 (1068)
Q Consensus       441 ~~i~i--wd~~~~---~-~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~s~dg~i~vwd~~~  494 (1068)
                      |.|+-  |....|   + +                +..+. .+..+|..+.+..  ....+.+-+..|+|.+|++..
T Consensus       199 g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  199 GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            64432  222221   1 1                11223 4677899998854  445888999999999999876

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.23  E-value=16  Score=32.82  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=67.7

Q ss_pred             EEEEcCCCCeEEEEEcCcCcEEEEecCCCcceee---eeeeeeeccccccceeeeeecCCCcceEEEEECC-----CCCE
Q 001490          315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI---RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSL  386 (1068)
Q Consensus       315 ~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~sp-----dg~~  386 (1068)
                      .-.|..... -|++++..|.|.|.+.........   ..++               +-.-...|++++-.+     +...
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~   66 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDC   66 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCE
Confidence            345555555 457777779999999865432211   1111               111335677775433     3456


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcC----CCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~----d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      |+.|+ ..++..||+.....+.    .+.-.+.|.++.+-.    +..  +++.|+ ...|.-+|.+..+...+
T Consensus        67 LliGt-~t~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~--l~ivGG-ncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   67 LLIGT-QTSLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSP--LVIVGG-NCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             EEEec-cceEEEEEcccCchhh----hhhCccceeEEEEEecCCCCCc--EEEECc-eEEEEEeCCCCcEEEEE
Confidence            77775 4569999999876553    223446677777632    223  455444 77888888544443333

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.84  E-value=7.5  Score=48.76  Aligned_cols=69  Identities=10%  Similarity=0.164  Sum_probs=46.1

Q ss_pred             CceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcE
Q 001490          914 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV  988 (1068)
Q Consensus       914 ~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~  988 (1068)
                      .+.+..+...+..+.....+.+-+|+.........+...+...      +.++..++++..||.+.+||...+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence            4455555555555555556666666665544444433222211      88999999999999999999999866

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.68  E-value=0.24  Score=52.16  Aligned_cols=95  Identities=17%  Similarity=0.287  Sum_probs=68.9

Q ss_pred             CccccccCccc----------cHHHHHHHhhCCChHHHHHhhccCC-CCCCcccceeEEEeeeehhhhhhcCCcchH--H
Q 001490            2 HRLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIA--K   68 (1068)
Q Consensus         2 ~~le~esg~~~----------~~~~~~~~il~G~w~~~~~~l~~~~-~~~~~~~~~~~~f~i~~q~~lE~l~~~~~~--~   68 (1068)
                      ++|-+|+|...          |+.+.-+++.+|+-.-|++.+..-. .+.+.. . ++.|.+..+.|++++..|...  +
T Consensus       137 ~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s-~LE~~Lh~l~fl~l~~~g~~~~~e  214 (394)
T KOG2817|consen  137 ECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-S-SLEFKLHSLHFLSLIRGGKSDQRE  214 (394)
T ss_pred             HHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-c-cHHHHHHHHHHHHHHhcCCcCcHH
Confidence            35667888664          3888899999999999999986532 112222 2 277999999999999988877  9


Q ss_pred             HHHHHHhhccccCCCCHHHHHHH-Hhhhccc
Q 001490           69 ALNILKKDLKDFAPGNEELFKEL-AQLLTLD   98 (1068)
Q Consensus        69 A~~~L~~~l~p~~~~~~~~~~~l-~~ll~~~   98 (1068)
                      |++..|+.++||......+.+.| +.|+-+.
T Consensus       215 Al~Yar~~~~~F~~~~~~eIQklm~sl~~l~  245 (394)
T KOG2817|consen  215 ALRYARTHFAPFVADHLREIQKLMGSLLYLR  245 (394)
T ss_pred             HHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence            99999999999966444444433 3333343

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.56  E-value=35  Score=37.12  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=88.9

Q ss_pred             ccccEEEEEEecCCceEEEeecCcc------EEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCee
Q 001490          709 KANKISRLTYNNGGQAIFALASNGV------HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  782 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  782 (1068)
                      .-+.+..+.+.+++..+++.+.+|.      +...++..... ..........+.+-+.. |..+.       .......
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~-------~~~~D~E   88 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP-------KNGLDPE   88 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC-------cCCCChh
Confidence            3456788999976667888888877      55555443111 11111111111111211 11110       0122556


Q ss_pred             EEEEecCCCEEEEEe-C------CeEEEEEccCceeEEEec---------------CCCCCeEEEEEeCCCCCEEEEEEC
Q 001490          783 CFALSKNDAYLFSAS-G------GVISLYIVMTFKTILTIM---------------PPSPTATSLAFNPHDNNVIAIGMD  840 (1068)
Q Consensus       783 ~l~~s~dg~~l~~~~-d------g~i~iwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~d~~~lasg~~  840 (1068)
                      +|++.++|.++++.. +      ..|.-++.. |+.+..+.               ..+...-+|+++| +|+.|.++.+
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E  166 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAME  166 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEEC
Confidence            788888888877765 4      457777766 65554431               1234678999999 8885555433


Q ss_pred             -----CC--e-------EEE--EEcCC-cee----eeeecc-----cccCeEEEEEcCCCCEEEE
Q 001490          841 -----DS--T-------ILI--YNARS-SEV----ISKLEG-----HSKRVTGLVFSDALNILVS  879 (1068)
Q Consensus       841 -----dg--~-------v~i--wd~~~-~~~----~~~~~~-----h~~~V~~l~~spdg~~l~s  879 (1068)
                           |+  .       +++  ||..+ ++.    ...+..     ....|..+.+-+++++|+.
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 22  1       445  45444 222    233332     3467888999999987764

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.49  E-value=23  Score=39.16  Aligned_cols=153  Identities=8%  Similarity=0.063  Sum_probs=92.2

Q ss_pred             EEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeeecC------CccEEEEEEcCCcEEEEeCC
Q 001490          420 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYD  493 (1068)
Q Consensus       420 v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~s~dg~i~vwd~~  493 (1068)
                      +..+-.+.+...+++..|+....++-.|++.|+.+..+..|...+  +.+.|..      +.+.|+ |-.+..|.-.|.+
T Consensus       469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR  545 (776)
T COG5167         469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPR  545 (776)
T ss_pred             hhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEeccc
Confidence            333444444555566777888889999999999999998887764  3333321      223444 4444445545555


Q ss_pred             CCCceEEecCCCC-----cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCE
Q 001490          494 SLGARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  568 (1068)
Q Consensus       494 ~~~~~~~~~~~~~-----~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  568 (1068)
                      .............     ...+..- ...-++++++..|+    |++||.-..+....+.+..   ..|..+..+.+|++
T Consensus       546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~  617 (776)
T COG5167         546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKH  617 (776)
T ss_pred             ccCCceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcE
Confidence            4443222211111     1222222 24457888876444    9999965555545555555   78999999999999


Q ss_pred             EEEEECCCeEEEEEcC
Q 001490          569 ILAAGDDHVIKIWDMN  584 (1068)
Q Consensus       569 l~~~s~dg~i~iwd~~  584 (1068)
                      +++.+. ..+.+-|+.
T Consensus       618 ilaTCk-~yllL~d~~  632 (776)
T COG5167         618 ILATCK-NYLLLTDVP  632 (776)
T ss_pred             EEEeec-ceEEEEecc
Confidence            998775 355555553

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.89  E-value=9  Score=42.26  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=64.4

Q ss_pred             CcCEEEEEEecCCCEEEEEECCCcEEEEE---------cCCCc--EEEEeccccccCCCCccCcccceEEEECCCC--CC
Q 001490          954 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1020 (1068)
Q Consensus       954 ~~~v~~l~fs~dg~~l~t~~~dg~v~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~ 1020 (1068)
                      .-.|..+..++.|..++-.|.+|.+..+=         ++.|+  ..|+..+... .-.+.+..+...-++|||+.  ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCc
Confidence            44677888899999999999998654432         23342  3444331110 00112345566778999953  46


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCccCCCCc
Q 001490         1021 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1050 (1068)
Q Consensus      1021 ~l~~~~~dg~i~~w~~~~~~~~~~~~~~~~ 1050 (1068)
                      .|..-+.|..|++|+.++....|...+++.
T Consensus       182 hL~iL~sdnviRiy~lS~~telylqpgepg  211 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPG  211 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence            788899999999999998887787776644

>PLN02193 nitrile-specifier protein

Probab=87.62  E-value=60  Score=37.46  Aligned_cols=154  Identities=11%  Similarity=0.013  Sum_probs=79.4

Q ss_pred             CCCEEEEEECC-----CeEEEEEcCCceeee--eecc-cccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcee
Q 001490          831 DNNVIAIGMDD-----STILIYNARSSEVIS--KLEG-HSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ  897 (1068)
Q Consensus       831 d~~~lasg~~d-----g~v~iwd~~~~~~~~--~~~~-h~~~V~~l~~spdg~~l~s~s~dg-----~i~iwd~~~~~~~  897 (1068)
                      ++++++.|+.+     ..+..||+.+.+-..  .+.. ....-...+..-++++.+.|+.++     .+..||+.+.+..
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            66788888765     368889988754322  2110 000111111223567777777543     4677888775532


Q ss_pred             eeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeC----CeEEEEECCCceeeeeeccC--CCcCEEEEEEecCCCEEE
Q 001490          898 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE----THLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVF  970 (1068)
Q Consensus       898 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d----~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~  970 (1068)
                      .   +........  .+....+..-++++.+. +.+    +.+.+||+.+.+.......+  ...+....+..-++++++
T Consensus       308 ~---~~~~~~~~~--~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv  382 (470)
T PLN02193        308 H---CSTPGDSFS--IRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVI  382 (470)
T ss_pred             e---CCCCCCCCC--CCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEE
Confidence            2   221111111  01112222346776666 333    46899999887654321111  111112223344677888


Q ss_pred             EEECC--------------CcEEEEEcCCCcEE
Q 001490          971 TSFVD--------------GTLSIHEASNLEVQ  989 (1068)
Q Consensus       971 t~~~d--------------g~v~vwd~~~~~~~  989 (1068)
                      .|+.+              ..+.++|+.+.+..
T Consensus       383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             ECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            88753              24788898888765

>PLN02193 nitrile-specifier protein

Probab=87.52  E-value=61  Score=37.42  Aligned_cols=157  Identities=8%  Similarity=-0.068  Sum_probs=71.9

Q ss_pred             EEEEEeCC-----CcEEEEECCCCceeeEeccC--CCcEEEEeeeecCCccEEEEEEcCC-----cEEEEeCCCCCceEE
Q 001490          433 SVITCGDD-----KTIKVWDAVTGSRTYSFEGH--GAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVD  500 (1068)
Q Consensus       433 ~l~s~~~d-----~~i~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~~~l~s~s~dg-----~i~vwd~~~~~~~~~  500 (1068)
                      +++.|+.+     ..+.++|+.+.+-...-...  ..+....+.... ++++.+.|+.++     .+..||+.+.+-...
T Consensus       231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~  309 (470)
T PLN02193        231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHC  309 (470)
T ss_pred             EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeC
Confidence            55556544     35888898775432211100  111111111111 445666666543     356677655432211


Q ss_pred             ec---CCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECC--
Q 001490          501 YD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--  575 (1068)
Q Consensus       501 ~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--  575 (1068)
                      ..   .........+..-+++..+.++.++.....+.+||+.+.+....-.............+..-+++.++.|+.+  
T Consensus       310 ~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~  389 (470)
T PLN02193        310 STPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAM  389 (470)
T ss_pred             CCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCC
Confidence            10   0000111111223667766666443323568999998876543321100000111111222345566666643  


Q ss_pred             ------------CeEEEEEcCCCeEEE
Q 001490          576 ------------HVIKIWDMNKVQLLT  590 (1068)
Q Consensus       576 ------------g~i~iwd~~~~~~~~  590 (1068)
                                  +.+.++|+.+.+...
T Consensus       390 ~~~~~~~~~~~~ndv~~~D~~t~~W~~  416 (470)
T PLN02193        390 DPLAHVGPGQLTDGTFALDTETLQWER  416 (470)
T ss_pred             ccccccCccceeccEEEEEcCcCEEEE
Confidence                        247888998876653

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=87.40  E-value=0.27  Score=53.03  Aligned_cols=243  Identities=16%  Similarity=0.134  Sum_probs=136.5

Q ss_pred             EEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001490          715 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  794 (1068)
Q Consensus       715 ~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~  794 (1068)
                      ...|.+.+..++.++.+..+..||-....                       ....     ........+++..+|..++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence            45667777778888888777776632211                       1111     1334455677777787776


Q ss_pred             EEe--CCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcC
Q 001490          795 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  872 (1068)
Q Consensus       795 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp  872 (1068)
                      +..  .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|...++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            665  58899999985433221111111222278999 899999999999999999988776666656999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCccc-CC-CCceEEEEeeCCCEEEEEeCCeEEE----EECCCceee
Q 001490          873 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT-LA-PSETHIQFHKDQTRFLLVHETHLAI----YEAEELTCL  946 (1068)
Q Consensus       873 dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~spdg~~la~~~d~~i~v----wd~~~~~~~  946 (1068)
                      .+ +.+.++.|..+.+-...+.....    ....+... .. .-...=.|..-|..+...-.+.+.+    ++-.++. +
T Consensus       170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~p-v  243 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEP-V  243 (615)
T ss_pred             cc-eeeecCcHHHHHHhhhccceeee----eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCc-c
Confidence            76 45556666655443333211100    00111100 00 0001112333344444322221111    1111111 1


Q ss_pred             eeeccCCCcCEEEEEEecCCCEEEEEECCCcEEEEEcCCCcEEEEec
Q 001490          947 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       947 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~  993 (1068)
                      ...+....+.+.++.|--||..+. +..-|.|.+-++.++++.+.+.
T Consensus       244 al~fq~~~gni~cyrwylDg~i~i-gf~ag~iV~iS~h~aeLgaeff  289 (615)
T KOG2247|consen  244 ALQFQEKYGNIHCYRWYLDGYILI-GFDAGYIVSISAHNAELGAEFF  289 (615)
T ss_pred             ceEeeecCCceeEEEEeccccccc-cccceeEEEEeccchHHHHHHH
Confidence            111223356788888888886444 6666777777888887766554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.39  E-value=4.7  Score=40.67  Aligned_cols=75  Identities=9%  Similarity=-0.062  Sum_probs=56.7

Q ss_pred             EEEeeCCCEEEE-EeCCeEEEEECCCceeeeee------cc-------CCCcCEEEEEEecCCCEEEEEECCCcEEEEEc
Q 001490          918 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA  983 (1068)
Q Consensus       918 ~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~dg~v~vwd~  983 (1068)
                      +.+...+.+|++ +.+|.+++||+.+++.+...      +.       .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            446677887776 89999999999998876432      22       2457889999999998777664 688999998


Q ss_pred             CCCcEEEEec
Q 001490          984 SNLEVQCRIL  993 (1068)
Q Consensus       984 ~~~~~~~~~~  993 (1068)
                      +-+..+....
T Consensus        95 ~L~~W~~vsd  104 (219)
T PF07569_consen   95 DLGCWIRVSD  104 (219)
T ss_pred             ccceeEEecc
Confidence            8877665444

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.20  E-value=3.3  Score=40.08  Aligned_cols=31  Identities=39%  Similarity=0.606  Sum_probs=25.5

Q ss_pred             cceEEEEECCCC------CEEEEEeCCcEEEEEEccC
Q 001490          373 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG  403 (1068)
Q Consensus       373 ~~V~~~~~spdg------~~las~~~d~~i~vwd~~~  403 (1068)
                      ..|.+++|||-|      -+||+.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            389999999953      4688889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.94  E-value=94  Score=38.99  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=18.0

Q ss_pred             ccccEEEEEEecCCceEEEeecCc
Q 001490          709 KANKISRLTYNNGGQAIFALASNG  732 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg  732 (1068)
                      +-+.+.+++++|||..+++-..+-
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN~  683 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGNS  683 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCch
Confidence            566788999999998766655443

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=86.94  E-value=1.1e+02  Score=39.78  Aligned_cols=135  Identities=13%  Similarity=0.061  Sum_probs=78.9

Q ss_pred             EEECCCeEEEEEcCCce-------eeeee---------cccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeee
Q 001490          837 IGMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  900 (1068)
Q Consensus       837 sg~~dg~v~iwd~~~~~-------~~~~~---------~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~  900 (1068)
                      .|-.||.|.-||-.+..       -+..+         .-..+.|..+.+++...-++-+. +..+.+=-. ........
T Consensus       618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~-r~~~e~G~  695 (1774)
T PF11725_consen  618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQR-RNKVELGD  695 (1774)
T ss_pred             eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Ccccccccc-cCCCCCCc
Confidence            35568999999975421       11111         11345666777776555444322 221211000 01111111


Q ss_pred             eeecCCCcccCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCceeeeeeccCCCcCEEEEEEecCCCEEEEEECCCcEEE
Q 001490          901 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       901 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v  980 (1068)
                      .+..+.     ...|+.++.-.+.++++....|.+..+. ..+..+..-..+-.+.|..++...+..+.+ -..+|.++-
T Consensus       696 ~l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~  768 (1774)
T PF11725_consen  696 ALEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR  768 (1774)
T ss_pred             cccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence            233222     1368999999999999999999999988 666655443445578999999988866544 556776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.61  E-value=16  Score=41.20  Aligned_cols=113  Identities=11%  Similarity=0.053  Sum_probs=61.0

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCC------CEEEEE--e--
Q 001490          862 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H--  931 (1068)
Q Consensus       862 ~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg------~~la~~--~--  931 (1068)
                      -...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+-      .+|.++  .  
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            34578899999998888765569999998665432211111111000 012467899999884      344432  1  


Q ss_pred             -------CCeEEEEECCCc-------eeee-eeccCCCcCEEEEEEecCCCEEEEEECC
Q 001490          932 -------ETHLAIYEAEEL-------TCLK-QWFPISSVPISQATFSCDCRMVFTSFVD  975 (1068)
Q Consensus       932 -------d~~i~vwd~~~~-------~~~~-~~~~~h~~~v~~l~fs~dg~~l~t~~~d  975 (1068)
                             ...|.-|.+...       +.+. .+.......-..|+|.|||.++++.+..
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                   223544554321       1111 1111101223467899999877766544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.56  E-value=13  Score=37.85  Aligned_cols=148  Identities=11%  Similarity=0.058  Sum_probs=82.8

Q ss_pred             EEEeCCCCCceEEecCCCCcEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCC---CeeeeEEeccccccCCeEEEEEec
Q 001490          488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT  564 (1068)
Q Consensus       488 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~~~v~~~~~~~  564 (1068)
                      .+||+.+.+...........+.+-++-+||+++.+|+. .+|...+++++..+   ................--++..-+
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            45777776554333233334445567899999988875 45677788888754   111111111111112334455668


Q ss_pred             CCCEEEEEECCC-eEEEEEcCC-Ce-EEE--EEeC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceeeec
Q 001490          565 AKDQILAAGDDH-VIKIWDMNK-VQ-LLT--TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  636 (1068)
Q Consensus       565 ~~~~l~~~s~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  636 (1068)
                      ||+.++.|+... +..+|.... .. ...  .+..   .....--..+...|+|++++.+..+.  .|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            999999987664 455555422 11 111  1110   11111234677889999999888754  46688877665555


Q ss_pred             cc
Q 001490          637 GV  638 (1068)
Q Consensus       637 ~~  638 (1068)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            43

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK13613 lipoprotein LpqB; Provisional

Probab=86.45  E-value=44  Score=39.46  Aligned_cols=189  Identities=10%  Similarity=0.029  Sum_probs=101.7

Q ss_pred             CeeEEEEecCCCEEEEEeC-C-eEEEEEccCcee----EEEecCCCCCeEEEEEeCCCCCEEEEEEC--CC--eEEEEEc
Q 001490          780 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA  849 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~  849 (1068)
                      .+.+++.|+++..+|...+ + .+.+..+..+..    ..... ....++.-.|.+ ++ .+-+...  ++  .+++..-
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence            6778999999999887763 3 466655533332    11111 233567777887 55 3333322  22  2555543


Q ss_pred             CCceee--eeeccccc-CeEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CceeeeeeeecCCCcccCCCCceEEEE
Q 001490          850 RSSEVI--SKLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQF  920 (1068)
Q Consensus       850 ~~~~~~--~~~~~h~~-~V~~l~~spdg~~l~s~s~---dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~  920 (1068)
                       +|+..  .. ....+ .|..+..|+||..++....   .+.|.|=-+..   +............+.    ..+.+++|
T Consensus       441 -~G~~~~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W  514 (599)
T PRK13613        441 -DGEPVEVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSW  514 (599)
T ss_pred             -CCcEEEeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEE
Confidence             44432  11 12233 7999999999988876554   35565554433   221111111111111    24889999


Q ss_pred             eeCCCEEEEE--eC--CeEEEEECCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEECCCcE
Q 001490          921 HKDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL  978 (1068)
Q Consensus       921 spdg~~la~~--~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v  978 (1068)
                      ..++.+++.+  ..  ..+...++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus       515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        515 AGDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             cCCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence            9999988854  23  3344444443222211 112344566677776666 45543555554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.37  E-value=3.7  Score=41.37  Aligned_cols=78  Identities=8%  Similarity=0.095  Sum_probs=54.5

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeee--eeecCCCcc----cCCCCceEEEEeeCCCEEEEEeCCeEEEEECCCc
Q 001490          870 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR--SLQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  943 (1068)
Q Consensus       870 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~~~~spdg~~la~~~d~~i~vwd~~~~  943 (1068)
                      +..++++|+....+|.+++||+.+.+.....  +.+......    .....|..+.++.+|.-|++-.+|..+.|+.+-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4457889999999999999999987644322  111111100    2224689999999999998877888999998755


Q ss_pred             eeee
Q 001490          944 TCLK  947 (1068)
Q Consensus       944 ~~~~  947 (1068)
                      ..+.
T Consensus        98 ~W~~  101 (219)
T PF07569_consen   98 CWIR  101 (219)
T ss_pred             eeEE
Confidence            4443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13614 lipoprotein LpqB; Provisional

Probab=86.28  E-value=61  Score=37.95  Aligned_cols=161  Identities=14%  Similarity=0.056  Sum_probs=87.4

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEccCceeEEEecCCCCCeEEEEEeCCCCCEEEEEECCC--eEEEEEcC-Ccee--
Q 001490          780 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV--  854 (1068)
Q Consensus       780 ~v~~l~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~--  854 (1068)
                      .+.+++.|++++.+|...+..-.+|-...+...+.+. ....++.-.|.+ ++ .+-+...+.  .|..+.-. +++.  
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~  420 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ  420 (573)
T ss_pred             cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence            6778999999999888874333444333333333222 133467778888 55 454444433  44444422 2111  


Q ss_pred             ----eeeeccccc-CeEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCE
Q 001490          855 ----ISKLEGHSK-RVTGLVFSDALNILVSSG-GDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  926 (1068)
Q Consensus       855 ----~~~~~~h~~-~V~~l~~spdg~~l~s~s-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  926 (1068)
                          ........+ .|..+..|+||..++... .+|.  |.|=-+.....-....+...... .....+.+++|..++.+
T Consensus       421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~sl  499 (573)
T PRK13614        421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDSTV  499 (573)
T ss_pred             ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCEE
Confidence                111122334 499999999998877643 4554  66654433211111122111110 00136889999999998


Q ss_pred             EEEEe----CCeEEEEECCCce
Q 001490          927 FLLVH----ETHLAIYEAEELT  944 (1068)
Q Consensus       927 la~~~----d~~i~vwd~~~~~  944 (1068)
                      ++.+.    +..+++..+..|.
T Consensus       500 ~V~~~~~~~~~~~~~v~v~~g~  521 (573)
T PRK13614        500 VVTKASATSNVVPELLSVDAGQ  521 (573)
T ss_pred             EEEeccCCCcceEEEEEeCCCC
Confidence            87732    2346777775443

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=85.68  E-value=47  Score=34.26  Aligned_cols=276  Identities=9%  Similarity=0.059  Sum_probs=132.3

Q ss_pred             CCeEEEEEecCCCEEEEEECCCeEEEEEcCCCeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEEEECCCCceee
Q 001490          555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  634 (1068)
Q Consensus       555 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  634 (1068)
                      +-+..+.++  +++++.+..+.-++|.|+.+...-..+..-....  ..-.+.-.|++..++.-|.-+.+.|+.+.....
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence            455666665  4678888888899999998754433322111101  223334458888888867678888887653222


Q ss_pred             e---ccccccceeeeEEcCCccccccccccCeeeecCCCCCCcccceeecccccceeecccccCCcccceeecCCccccc
Q 001490          635 A---AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  711 (1068)
Q Consensus       635 ~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  711 (1068)
                      .   ..........+++                        .|++-..+..|+.+.+-|+...........    .....
T Consensus       163 lagrya~~~~d~~~v~I------------------------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~----~n~g~  214 (370)
T COG5276         163 LAGRYALPGGDTHDVAI------------------------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGS----YNTGP  214 (370)
T ss_pred             eeeeeccCCCCceeEEE------------------------ecCeEEEEEeCCCeEEEEccCCCCCeEEEE----EecCC
Confidence            1   1111111122222                        255556666777888888664332211111    11222


Q ss_pred             cEEEEEEecCCceEEEeecCccEEEEeccCCccCCCccceeccCCcccCCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001490          712 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  791 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  791 (1068)
                      .+.++..+++..+++.... | +.+-|.+..+           .+.++.           ..+......++.+..  .++
T Consensus       215 g~~sv~vsdnr~y~vvy~e-g-vlivd~s~~s-----------sp~~~g-----------syet~~p~~~s~v~V--s~~  268 (370)
T COG5276         215 GTYSVSVSDNRAYLVVYDE-G-VLIVDVSGPS-----------SPTVFG-----------SYETSNPVSISTVPV--SGE  268 (370)
T ss_pred             ceEEEEecCCeeEEEEccc-c-eEEEecCCCC-----------CceEee-----------ccccCCcccccceec--ccc
Confidence            5677777776654444332 2 3333332221           011111           111011222222333  344


Q ss_pred             EEEEEe-CCeEEEEEccCcee---EEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEE
Q 001490          792 YLFSAS-GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  867 (1068)
Q Consensus       792 ~l~~~~-dg~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~  867 (1068)
                      +...+. +..+.+-|++....   ...+.........+..+   +.++..+..+ ...+-+....+......+....+.+
T Consensus       269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s  344 (370)
T COG5276         269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS  344 (370)
T ss_pred             eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence            544444 34455555543211   11121112123333333   2344444433 3444455443333333333333444


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECC
Q 001490          868 LVFSDALNILVSSGGDAQIFVWDVD  892 (1068)
Q Consensus       868 l~~spdg~~l~s~s~dg~i~iwd~~  892 (1068)
                      .+.+-+.+.+-+...++-+.||+..
T Consensus       345 ~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         345 CDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             cceEEEeeEEEEeecCCCEEEEEec
Confidence            5555566778888888889999853

>PRK13615 lipoprotein LpqB; Provisional

Probab=85.60  E-value=80  Score=36.86  Aligned_cols=151  Identities=9%  Similarity=0.015  Sum_probs=88.6

Q ss_pred             eEEEEEeCCCCCEEEEEECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cceeeee
Q 001490          822 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR  900 (1068)
Q Consensus       822 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~~  900 (1068)
                      ..+++.++ ++..+|....++.++++... +.....+.  ...++.-.|.++| ++-+.-.+...++..... ++..   
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~---  407 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH---  407 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence            37889999 88888888778888887665 22222232  2236667788877 555554444455555433 2221   


Q ss_pred             eeecCCCcccCCCCceEEEEeeCCCEEEEE-e---CCeEEEEECC--Cc--eee----eeeccCCCcCEEEEEEecCCCE
Q 001490          901 SLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAE--EL--TCL----KQWFPISSVPISQATFSCDCRM  968 (1068)
Q Consensus       901 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~---d~~i~vwd~~--~~--~~~----~~~~~~h~~~v~~l~fs~dg~~  968 (1068)
                      .+...-.   ....|..+..|+||.++|.- .   .++|+|--+.  .+  ..+    ..+..+ ...+.++.|..++.+
T Consensus       408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l  483 (557)
T PRK13615        408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV  483 (557)
T ss_pred             Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence            1111111   12479999999999999873 2   2556654332  22  122    111112 348899999999987


Q ss_pred             EEEEE---CCCcEEEEEcC
Q 001490          969 VFTSF---VDGTLSIHEAS  984 (1068)
Q Consensus       969 l~t~~---~dg~v~vwd~~  984 (1068)
                      ++.+.   .+..+++..+.
T Consensus       484 aVl~~~~~~~~~v~~v~v~  502 (557)
T PRK13615        484 ATLTLAPDGERQVELHQVG  502 (557)
T ss_pred             EEEeccCCCCceEEEEECC
Confidence            66552   23446665655

>PLN02153 epithiospecifier protein

Probab=85.38  E-value=63  Score=35.46  Aligned_cols=162  Identities=10%  Similarity=0.033  Sum_probs=77.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-eC-----------CeE
Q 001490          873 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------THL  935 (1068)
Q Consensus       873 dg~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~d-----------~~i  935 (1068)
                      ++++++.|+.+     ..+.+||..+.+-.....+.......   .+....+..-++++.+.| .+           ..+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~---~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v  161 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPE---ARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI  161 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCC---CceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence            56777777754     24778888875533221111000010   122223334456655553 22           247


Q ss_pred             EEEECCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEECC-------------CcEEEEEcCCCcEEEEeccccccCC
Q 001490          936 AIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-------------GTLSIHEASNLEVQCRILSTAYLRP 1000 (1068)
Q Consensus       936 ~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~d-------------g~v~vwd~~~~~~~~~~~~~~~~~~ 1000 (1068)
                      .+||..+.+-......+  ...+-...+..-+++.++.++.+             ..+.+||..+.+....-. ....|.
T Consensus       162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~-~g~~P~  240 (341)
T PLN02153        162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET-TGAKPS  240 (341)
T ss_pred             EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc-cCCCCC
Confidence            88998876544311111  01111111123466666665532             358889988876653211 111111


Q ss_pred             CCccCcccceEEEECCCCCCEEEEEeCC--------------CcEEEEeCCCCCCCCccCC
Q 001490         1001 TTSCLHVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1047 (1068)
Q Consensus      1001 ~~~~~~~~~~~~~~~p~~~~~l~~~~~d--------------g~i~~w~~~~~~~~~~~~~ 1047 (1068)
                      .     ....+++..  ++.+++.|+..              +.|..+|+  ....|..++
T Consensus       241 ~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~--~~~~W~~~~  292 (341)
T PLN02153        241 A-----RSVFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDT--ETLVWEKLG  292 (341)
T ss_pred             C-----cceeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEc--CccEEEecc
Confidence            1     111122222  35788888852              14555555  455788765

>PLN02153 epithiospecifier protein

Probab=85.33  E-value=63  Score=35.45  Aligned_cols=154  Identities=12%  Similarity=0.041  Sum_probs=77.4

Q ss_pred             CCCEEEEEECC-----CeEEEEEcCCcee--eeeecc---cccCeEEEEEcCCCCEEEEEeCC-----------CcEEEE
Q 001490          831 DNNVIAIGMDD-----STILIYNARSSEV--ISKLEG---HSKRVTGLVFSDALNILVSSGGD-----------AQIFVW  889 (1068)
Q Consensus       831 d~~~lasg~~d-----g~v~iwd~~~~~~--~~~~~~---h~~~V~~l~~spdg~~l~s~s~d-----------g~i~iw  889 (1068)
                      ++++++.|+.+     ..+.+||+.+.+-  +..+..   ........+..-++++.+.|+.+           ..|.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            56788888754     2578899887542  222210   01111112223356777777754           247788


Q ss_pred             ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEEE-e-------------CCeEEEEECCCceeeeeeccC--C
Q 001490          890 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------------ETHLAIYEAEELTCLKQWFPI--S  953 (1068)
Q Consensus       890 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~-------------d~~i~vwd~~~~~~~~~~~~~--h  953 (1068)
                      |..+.+-..   +........  .+....+..-++++.+.+ .             .+.+.+||..+.+....-..+  .
T Consensus       165 d~~~~~W~~---l~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P  239 (341)
T PLN02153        165 NIADGKWVQ---LPDPGENFE--KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP  239 (341)
T ss_pred             ECCCCeEee---CCCCCCCCC--CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence            888765332   222110000  011111223466665552 1             145889998877654321111  1


Q ss_pred             CcCEEEEEEecCCCEEEEEECC--------------CcEEEEEcCCCcEE
Q 001490          954 SVPISQATFSCDCRMVFTSFVD--------------GTLSIHEASNLEVQ  989 (1068)
Q Consensus       954 ~~~v~~l~fs~dg~~l~t~~~d--------------g~v~vwd~~~~~~~  989 (1068)
                      ..+....+...+++.++.|+..              ..+..+|+.+.+..
T Consensus       240 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~  289 (341)
T PLN02153        240 SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE  289 (341)
T ss_pred             CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence            1111122233467778888752              25778888777654

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.16  E-value=48  Score=38.22  Aligned_cols=194  Identities=13%  Similarity=0.056  Sum_probs=0.0

Q ss_pred             CCCEEEEE---ECCCeEEEEEcCCceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeeeeeecC-C
Q 001490          831 DNNVIAIG---MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-D  906 (1068)
Q Consensus       831 d~~~lasg---~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~  906 (1068)
                      ++-+++.+   ...+...++|.. |..+..+.........+.+.++|.+++..+  ..++.+|+..........-... .
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~  190 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYD  190 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-
T ss_pred             CcEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccc


Q ss_pred             CcccCCCCceEEEEeeCCCEEEEEe--------------CCeEEEEECCCceeeeeeccCC------C------------
Q 001490          907 GVMTLAPSETHIQFHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPIS------S------------  954 (1068)
Q Consensus       907 ~~~~~~~~v~~~~~spdg~~la~~~--------------d~~i~vwd~~~~~~~~~~~~~h------~------------  954 (1068)
                      -|..       +..-|+|.+|+.+.              +..|..+| .+|+.+..|-...      .            
T Consensus       191 ~HHD-------~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~  262 (477)
T PF05935_consen  191 FHHD-------IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS  262 (477)
T ss_dssp             B-S--------EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred             cccc-------cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccc


Q ss_pred             --------cCEEEEEEec-CCCEEEEEECCCcEEEEEcCCCcEEEEeccccccCCCCccCcccce----------EEEEC
Q 001490          955 --------VPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH----------AIAAH 1015 (1068)
Q Consensus       955 --------~~v~~l~fs~-dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 1015 (1068)
                              ..+.++.+.+ ++.+|+++=.-..|...|..++++...+.....-.......-..++          .-.|.
T Consensus       263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~  342 (477)
T PF05935_consen  263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFD  342 (477)
T ss_dssp             -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS--
T ss_pred             cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCc


Q ss_pred             CCCCCEEEEEeCCC---cEEEEe
Q 001490         1016 PLKPTQFAVGLTNG---EVYVIE 1035 (1068)
Q Consensus      1016 p~~~~~l~~~~~dg---~i~~w~ 1035 (1068)
                      ..-++.-+.--.+|   .|.++|
T Consensus       343 ~~~gQH~~~~~~~g~~~~l~vFD  365 (477)
T PF05935_consen  343 WFWGQHTAHLIPDGPQGNLLVFD  365 (477)
T ss_dssp             --SS-EEEEE-TTS---SEEEEE
T ss_pred             ccccccceEEcCCCCeEEEEEEE

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.93  E-value=3.7  Score=48.19  Aligned_cols=135  Identities=13%  Similarity=0.112  Sum_probs=77.5

Q ss_pred             CceEEEEcC-CCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccc--cccceeeeeecCCCcceEEEEEC--CCCCE
Q 001490          312 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWS--PDGSL  386 (1068)
Q Consensus       312 ~V~~v~~sp-dg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~h~~~V~~~~~s--pdg~~  386 (1068)
                      .|+.+...- .++.+|+.+..||.|.+|.+++-.......  .-+...  .....+......-...++.++++  ...++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence            355554433 223478888999999999874310000000  000000  00000000111234589999999  88899


Q ss_pred             EEEEeCCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCC--C--cEEEEEEeCCCcEEEEEC
Q 001490          387 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--K--QISVITCGDDKTIKVWDA  448 (1068)
Q Consensus       387 las~~~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~--~--~~~l~s~~~d~~i~iwd~  448 (1068)
                      ||+++....|.||-............-..|...|.+|+|.++.  .  ...+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999888888888665421111110111366789999997764  1  136888899999998886

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13614 lipoprotein LpqB; Provisional

Probab=84.69  E-value=54  Score=38.36  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             CeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceee-eeecccccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCC-Cce
Q 001490          821 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI  896 (1068)
Q Consensus       821 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~dg--~i~iwd~~~-~~~  896 (1068)
                      .+.+++.++ ++..+|....|+. .+|-...+... ..+.+.  .++.-.|.++| ++-+...+.  .|....-.. ++.
T Consensus       344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~--~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~  418 (573)
T PRK13614        344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSGS--TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG  418 (573)
T ss_pred             cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecCC--CccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence            678899999 8888888877762 33432223322 233332  36677888887 555554433  444443221 110


Q ss_pred             eeee--eeecCCCcccCCCCceEEEEeeCCCEEEE--EeCCe--EEEEEC---CCcee--eeeec-cCCCcCEEEEEEec
Q 001490          897 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTC--LKQWF-PISSVPISQATFSC  964 (1068)
Q Consensus       897 ~~~~--~~~~~~~~~~~~~~v~~~~~spdg~~la~--~~d~~--i~vwd~---~~~~~--~~~~~-~~h~~~v~~l~fs~  964 (1068)
                      ....  .+.. ....  ...|..+..|+||.++|.  ..++.  |+|--+   ..|..  +.... .++...+.++.|..
T Consensus       419 ~~~~~~~v~~-~~l~--g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~  495 (573)
T PRK13614        419 AQAPTVTLTA-DWLA--GRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG  495 (573)
T ss_pred             ccccceeecc-cccC--CCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence            0000  1111 1111  124999999999999987  34665  665433   34541  11110 12246889999999


Q ss_pred             CCCEEEEEEC---CCcEEEEEcCCC
Q 001490          965 DCRMVFTSFV---DGTLSIHEASNL  986 (1068)
Q Consensus       965 dg~~l~t~~~---dg~v~vwd~~~~  986 (1068)
                      ++.+++.+..   +..+++..+..|
T Consensus       496 ~~sl~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        496 DSTVVVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             CCEEEEEeccCCCcceEEEEEeCCC
Confidence            9987766532   234566666444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.62  E-value=2.6  Score=45.27  Aligned_cols=172  Identities=13%  Similarity=0.133  Sum_probs=94.2

Q ss_pred             eeEEEecCCCCCeEEEEEeCCCCCEEEEEECCCeEEEEEcCCceee-eeec-cccc----CeE-EEEEcCCCCEEEEEeC
Q 001490          810 KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLE-GHSK----RVT-GLVFSDALNILVSSGG  882 (1068)
Q Consensus       810 ~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~~~-~h~~----~V~-~l~~spdg~~l~s~s~  882 (1068)
                      +.++.+......+..+-..| ||+.|..-+. .++.++++.+.... +++. ...+    .|+ .+..-..|.-|..++.
T Consensus       211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence            33444555667888899999 8998887665 68899988764321 1111 1111    122 2222345677888889


Q ss_pred             CCcEEEE-ECCCCceeeeeeeecCCCcccCCCCceEEEEeeCCCEEEE-EeCCeEEEEECCCceeeeeeccCCCcCEEEE
Q 001490          883 DAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA  960 (1068)
Q Consensus       883 dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l  960 (1068)
                      ||.|.-| |+..+.......++..+-..   ..+..+.=-..-+-+++ ...|++.++.....+.+..  ..--..+.-+
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~p---a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~  363 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAP---AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLV  363 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCc---ccceeeccccccceEEEEcCCCceeeeecccCcceeh--hhhhcCccee
Confidence            9988877 44433222211111111110   12222211111122333 4556666665443333221  1112356778


Q ss_pred             EEecCCCEEEEEECCCcEEEEEcCCCcEE
Q 001490          961 TFSCDCRMVFTSFVDGTLSIHEASNLEVQ  989 (1068)
Q Consensus       961 ~fs~dg~~l~t~~~dg~v~vwd~~~~~~~  989 (1068)
                      ++||.+.+|++- ..|.++++.+++....
T Consensus       364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             eeCcccchheee-cCCceEEEEecCCCCC
Confidence            999999999965 5678999998877554

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.24  E-value=81  Score=35.83  Aligned_cols=272  Identities=16%  Similarity=0.085  Sum_probs=132.6

Q ss_pred             CceEEEEcCCCCeEEEEEcCcCcEEEEecCCCcceeeeeeeeeeccccccceeeeeecCCCcceEEEEECCCCCEEEEEe
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~v~~spdg~~lla~gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~spdg~~las~~  391 (1068)
                      .|.++.+.-.|. | -.|+.|| +..+|..+|+.+....                  .....+|.++.-+-.|+ |.+|+
T Consensus       166 ~V~aLv~D~~g~-l-WvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LWVGT  223 (671)
T COG3292         166 PVVALVFDANGR-L-WVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LWVGT  223 (671)
T ss_pred             cceeeeeeccCc-E-EEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EEEEe
Confidence            788999999997 3 5566654 6777877777665311                  01114566665555554 56677


Q ss_pred             CCcEEEEEEccCCCcccceEEEccccccEEEEEEcCCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCC--CcEEEEe
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC  468 (1068)
Q Consensus       392 ~d~~i~vwd~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~--~~v~~i~  468 (1068)
                      .+| |.+.+.++.+....  -..-..+.|..+.=..+|.   +-.|+..|-. ......+...... +-|.  ..|.++.
T Consensus       224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~-r~~l~rq~Lq~~~~~~~l~~S~vnsL~  296 (671)
T COG3292         224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLW-RTRLPRQGLQIPLSKMHLGVSTVNSLW  296 (671)
T ss_pred             ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccce-eEecCCCCccccccccCCcccccccee
Confidence            777 78877766321110  0011233455444444454   4445544422 2233333332222 1122  2233332


Q ss_pred             eeecCCccEEEEEEcCCcEEEEeCCCCCceEEecCCCCcEEEEEEcc--CCCEEEEEeeCCCCceeEEEEeCCCCeeeeE
Q 001490          469 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT  546 (1068)
Q Consensus       469 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~  546 (1068)
                        -+.+| -|-+++.+|.+++-+-+-..........+..+...+.+|  .+..+-....    .+.+.+-+..+|..++.
T Consensus       297 --~D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s  369 (671)
T COG3292         297 --LDTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS  369 (671)
T ss_pred             --eccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence              23343 456666666665543221111111111111111111122  1111111110    12355555566766666


Q ss_pred             EeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCC-CeEEEEEeCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001490          547 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  624 (1068)
Q Consensus       547 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  624 (1068)
                      .....  ...|+.+++..++ .+-.|+...-+..|+.++ +......... ....|..+.=.|+++ |..|+.+|.++.
T Consensus       370 v~q~R--g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         370 VHQLR--GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             eeecc--ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence            43333  3457777777744 556666665566777666 3333333222 234577777788887 777888776544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.91  E-value=6.3  Score=38.15  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.3

Q ss_pred             cCeEEEEEcCCC------CEEEEEeCCCcEEEEECCC
Q 001490          863 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG  893 (1068)
Q Consensus       863 ~~V~~l~~spdg------~~l~s~s~dg~i~iwd~~~  893 (1068)
                      ..|.+++|||-|      .+|++...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999955      5789999999999998774

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.58  E-value=22  Score=44.83  Aligned_cols=69  Identities=12%  Similarity=0.184  Sum_probs=42.5

Q ss_pred             cEEEEEEccCCCEEEEEeeCCCCceeEEEEeCCCCeeeeEEeccccccCCeEEEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001490          507 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  586 (1068)
Q Consensus       507 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  586 (1068)
                      ++.+..+......++...     .+.+.+|+.........+....        ...++++..++++..||.+..||...+
T Consensus       200 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNG--------QLESRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             ccceeeeecCCCcceeee-----eeeeeehhcccccchhhccccc--------ccCccCCceEEEEEecCCEEeeecCCC
Confidence            444555444444444332     3346666655444433333322        112788999999999999999999988


Q ss_pred             eE
Q 001490          587 QL  588 (1068)
Q Consensus       587 ~~  588 (1068)
                      +.
T Consensus       267 ~~  268 (993)
T KOG1983|consen  267 KL  268 (993)
T ss_pred             ce
Confidence            66

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1068
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		9e-13
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		9e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		9e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 432
           SV  V +SPDG  +  A     V+L+  +G     Q L+ +  H  +V  +AFS P  Q 
Sbjct: 59  SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 433 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 490
           ++ +  DDKT+K+W+   G    +  GH + V+ +   P  +     I S S D  +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 491 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 548
             +   L     + +   G   +A+S +G+ + S    K     +  WN   G + +T  
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 549 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 601
           G     +SV  V F      I +A DD  +K+W+ N  QLL T+             P+ 
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 602 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 645
             I           +N+NG LL  +   +     +  +P+  ++ +A   SD+    L  
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 646 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 705
            +   + T+TG   +   V+ + D +      I+  +++K+     L+ R  +   LL  
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 706 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 765
               ++ +  + ++  GQ I + + +    +W                        R+G 
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 766 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 825
           Q +   T  S+S   V   A S +D  + SAS            + + T+   S +   +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 826 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 885
           AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS     + S+  D  
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 886 IFVWDVDGWGIQTC 899
           + +W+ +G  +QT 
Sbjct: 532 VKLWNRNGQLLQTL 545

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 812 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 871
           + T+   S +   +AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS
Sbjct: 50  LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 872 DALNILVSSGGDAQIFVWDVDGWGIQTC 899
                + S+  D  + +W+ +G  +QT 
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 806
           + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 20  SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
              K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 75  YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926
              F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 927 FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983
            L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 185 -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 984 S 984
           S
Sbjct: 244 S 244

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 806
           + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 22  SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
              K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 77  YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 926
              F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 927 FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 983
            L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 187 -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 984 S 984
           S
Sbjct: 246 S 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 814
           P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 12  PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 874
           I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 67  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 934
           N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 126 NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 935 ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
                I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
           + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6   SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
            K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61  GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
            F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
           +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
            +T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 1   GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
            K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 56  GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
            F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 115 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
           +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 752 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 810
           T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2   TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
              TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57  FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 871 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930
           +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 931 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
             ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 756 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 814
           P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 2   PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 815 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 874
           I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 57  ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 875 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 934
           N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 116 NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 935 ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
                I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 752 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 810
           T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2   TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
              TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57  FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 871 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930
           +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 931 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
             ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 752 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 810
           T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 19  TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
              TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 74  FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 871 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 930
           +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 133 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 931 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
             ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 609
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 610 -GTLLAVIANENRIKI--LETPE 629
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 806
           + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1   SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
              K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56  YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925
              F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 926 RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + +
Sbjct: 166 --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 983 AS 984
            S
Sbjct: 224 YS 225

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
           + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6   SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
            K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61  GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
            F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
           +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
           +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 9   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
               + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 64  KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
           S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 123 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
            I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 750 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 808
           + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 5   SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
            K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 60  GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
            F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 929 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
           +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
           +P +  +F +   T     +AV     S N  +L ++S   +I ++     K   TI   
Sbjct: 13  KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
               + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68  KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
           S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
            I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
           +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13  KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
               + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68  KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
           S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
            I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 609
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 760 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 818
           +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13  KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 819 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 878
               + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68  KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 879 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 935
           S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 936 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 984
            I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 609
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 610 -GTLLAVIANENRIKI--LETPE 629
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 748 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 806
           + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1   SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 807 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 866
              K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56  YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 867 GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 925
              F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 926 RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 982
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D  L + +
Sbjct: 166 --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 983 AS 984
            S
Sbjct: 224 YS 225

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 783 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 835
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 836 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 886
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 887 FVWDV 891
            VWDV
Sbjct: 157 LVWDV 161

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 783 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 835
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 836 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 886
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 887 FVWDV 891
            VWDV
Sbjct: 157 LVWDV 161

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 123/624 (19%), Positives = 229/624 (36%), Gaps = 111/624 (17%)
Query: 367  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 426
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 427  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 485
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 674  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 486  KIKAWLY------------------------DSLGARVDYDAP-GLGCTRMA---YSANG 517
             +K W                          D L A    D    L   R A    S N 
Sbjct: 731  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 518  RRLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 554
            +R F                C  S +G+  +V            + G +   + G    H
Sbjct: 791  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 555  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 615  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 667
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 906  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 668  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 721
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 965  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 722  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 782  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 842  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 899
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 900  RSLQTPDGVMTLAPSETHIQFHKD 923
              +   +G  T     T + F  D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 367  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 426
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 427  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 485
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 667  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 486  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 518
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 724  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 519  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 554
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 784  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 555  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 615  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 667
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 899  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 668  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 721
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 958  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 722  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 781
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 782  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 841
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 842  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 899
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 900  RSLQTPDGVMTLAPSETHIQFHKD 923
              +   +G  T     T + F  D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 496
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 497 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 555 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 613 LAVIANENRIKILE 626
           L   A    IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 496
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 497 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 555 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 612
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 613 LAVIANENRIKILE 626
           L   A    IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 49/315 (15%)
Query: 298 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 356
            P+   +  + G  SP++ + FHPV  ++++  +      +WD  +G   F R  K    
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD--FERTLK---- 147
Query: 357 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 416
                            SV  + +   G LL    +   ++L+ + G    R    +  H
Sbjct: 148 -------------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGH 191
Query: 417 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 476
             NV+ ++       I  ++   DKTIK+W+  TG    +F GH   V  + P+  ++  
Sbjct: 192 DHNVSSVSIMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGT 247
Query: 477 FIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE 530
            I S S D  ++ W+  +   + +       + C   A    YS+      S  T K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGK 306
Query: 531 --SFLVE---------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 579
              FL+          W+ S G    T  G     N V  V F +    IL+  DD  ++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 580 IWDMNKVQLLTTIDA 594
           +WD    + + T++A
Sbjct: 364 VWDYKNKRCMKTLNA 378

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 117/288 (40%), Gaps = 57/288 (19%)
Query: 330 TNVGDTG-LWDVNSGQKLFI-----RNFKVW--DIGAC--SMLFKTALVRDPGVSVNRVV 379
           T VG TG +W       + I     R  KVW  + G C  ++   T+ VR   +   RVV
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 439
                + L V   +    L+   G            HV  V  + +        V++   
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGR----RVVSGAY 257
Query: 440 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 499
           D  +KVWD  T +  ++ +GH   VYSL     + IH + S S+D  I+ W         
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVV-SGSLDTSIRVW--------- 304
Query: 500 DYDAPGLGCTRMAYSANGRRLFSCG--------TSKEGESFLVEWNESEGAIKRTYQGLQ 551
             D     C    ++  G +  + G         S   +S +  W+   G   +T QG  
Sbjct: 305 --DVETGNCI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 552 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGG 596
              ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG
Sbjct: 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 859
           +  ++ +  P           H N V ++  D         D++I +++  +   I  L 
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 860 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 919
           GH    +G+   D  NILVS   D+ + +WD     I+T + LQT  G      + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 920 FHKD 923
           F+K+
Sbjct: 370 FNKN 373

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 411 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 471 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 516
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 517 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 573
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 574 DDHVIKIWDMNKVQLLTTIDAGGGL 598
            D  I+IWD+   +L+ T+     L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 824 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 883
           S+ F+P D   +A G +D  I I++  + +++  L+GH + +  L +  + + LVS  GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 884 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 914
             + +WD+     Q   +L   DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 411 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 470
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 471 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 516
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 517 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 573
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 574 DDHVIKIWDMNKVQLLTTIDAGGGL 598
            D  I+IWD+   +L  T+     L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 802
           L ++  ++     RL+   +G Q     + D+   +A    A S +  YL + +  G ++
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 803 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 862
           ++ V + K   ++        S+A++P D   +A G  D  I I++  + +++  LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 863 KRVTGLVFSDALNILVSSGGDAQIFVWDV 891
             +  L FS    +LV++  D  I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 434
           V  VV S DG           ++L+    G   R+ +    H  +V  +AFS   +QI  
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 435 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 490
           ++   D+TIK+W+ +   + T S  G G   +  C     N     I S S D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 491 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 545
                L  +L     Y       + +A S +G    S G  K+G   L  W+ +EG  K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 546 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 583
            Y    L+ NSV      +     L A  +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 783 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 835
           C+ L+ N A  L ++ GG   + I  T       K++L+      T   +A++P  N + 
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 836 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
           +   D +T I   N    E ++ LEGH   V  + ++ + N+L +   D  ++VW+VD
Sbjct: 78  SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1068
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (192), Expect = 4e-16
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 352 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 411
           K+WD+                  +N + + P+G+           +L+      +     
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 471
             +   G +  ++FS   + +  +   DD    VWDA+   R     GH   V  L    
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 472 KENIHFIFSISVDGKIKAW 490
                 + + S D  +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 5e-15
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 435 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 492
           ++   D + K+WD   G    +F GH + + ++C     N     + S D   +      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257

Query: 493 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
           D       +D    G T +++S +GR L +             W+  +        G   
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310

Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 582
             N VS +        +     D  +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 1e-14
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 730 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 789
           +  V  +   P   L +S         +L+  R G        T +  +  +       N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237

Query: 790 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 846
                + S      +            +        TS++F+     ++  G DD    +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296

Query: 847 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
           ++A  ++    L GH  RV+ L  +D    + +   D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)

Query: 827 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 886
               D  +   G  D++  +++ R         GH   +  + F    N   +   DA  
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 887 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 945
            ++D+         S       +T       + F K     L  ++  +  +++A +   
Sbjct: 251 RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 946 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 980
                      +S    + D   V T   D  L I
Sbjct: 305 AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)

Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
            +  + W  D  LL  A     + ++  +  +       I      V   A++     ++
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
                +  +I       G+   S E  G   Y        + + I + S D     W  +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +      +         ++ + + R   S       ++    W+  EG  ++T+ G    
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225

Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 613
            + ++ + F    +      DD   +++D+   Q L T      +     + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 614 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 666
               ++    + +  +++         + +  L V         G  +  + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 363
           QT     S   ++ F P  +           TG  D                        
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261

Query: 364 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 423
            T    +    +  V +S  G LL   Y      ++         +   +  H   V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318

Query: 424 AFSAPCKQISVITCGDDKTIKVWD 447
             +     +   T   D  +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)

Query: 408 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467
           R +  +  H+  +  + +    + +  ++   D  + +WD+ T ++ ++     + V + 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527
                 + +++    +D     +   +    V       G T               TS 
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 587
              +  +   E+                 V  +         ++   D   K+WD+ +  
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 588 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624
              T            ICF  NG   A  +++   ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 9e-06
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 801 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 858
             L+ V       T         ++ F P + N  A G DD+T  +    A    +    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 859 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 918
           +     +T + FS +  +L++   D    VWD           L   D  +      + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318

Query: 919 QFHKDQTRFL 928
               D     
Sbjct: 319 GVTDDGMAVA 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 6e-15
 Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)

Query: 413 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 472
           +  H   V  + F      +  ++  +D TIKVWD  TG    + +GH   V  +     
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 473 ENIH----------------------------------------FIFSISVDGKIKAWLY 492
             +                                          I S S D  IK W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 493 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 552
            +      +         +  + +G  + SC   +     +  W  +    K   +  + 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186

Query: 553 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 595
               +S                           +L+   D  IK+WD++    L T+   
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 596 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 655
                   + F+  G  +   A++  +++ +      +         +  L  +  +   
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 656 GAGIANGSVSV 666
             G  + +V V
Sbjct: 305 VTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 9/188 (4%)

Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSML 362
           +T          +  +    TL+   +N     +W V + +    +R  +          
Sbjct: 137 KTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 363 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 422
             +                  G  L        ++++    G      + +  H   V  
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRG 252

Query: 423 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 482
           + F +  K I  ++C DDKT++VWD        +   H   V SL  H      ++ + S
Sbjct: 253 VLFHSGGKFI--LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP--YVVTGS 308

Query: 483 VDGKIKAW 490
           VD  +K W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 45/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 299 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 346
           P+   +  + G  SP   + FHP   ++++  +      +WD  +G              
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 347 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 394
                                +           +     +V+ V   P+G  +  A    
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 395 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 454
            ++++                H   V  +  +     I   +C +D+T++VW   T    
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178

Query: 455 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 496
                H   V  +    + +                    F+ S S D  IK W   +  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 497 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 556
             +           + + + G+ + SC   K     L  W+       +T        + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT----LRVWDYKNKRCMKTLNA---HEHF 291

Query: 557 VSVVHFDTAKDQILAAGDDHVIKIWD 582
           V+ + F      ++    D  +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 718 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 777
            N  G  I + +++    +W     +          V   +          +++ T S  
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209

Query: 778 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
                     K   +L S S    I ++ V T   ++T++        + F+      I 
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263

Query: 837 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
              DD T+ +++ ++   +  L  H   VT L F      +V+   D  + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 5e-09
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 782 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 829
                +++   + S S    + +++V T +    +         +++ P           
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 830 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 881
                        +  G  D TI +++  +   +  L GH   V G++F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 882 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 928
            D  + VWD      +  ++L   +  +      T + FHK     +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 882
           T + F+P   +V+    +D+TI +++  + +    L+GH+  V  + F  +  +      
Sbjct: 21  TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73

Query: 883 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 942
                        +   +  +    +     + + +    +    +             +
Sbjct: 74  --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 943 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 992
                + F      +     + D  ++ +   D T+ +   +  E +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)

Query: 847  YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 906
            +  R  E  + L GH   VT ++F    +++VS+  DA I VWD +       R+L+   
Sbjct: 3    WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59

Query: 907  GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 966
                   S   I F                     +     +        +S  +   + 
Sbjct: 60   D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 967  RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1026
              + ++  D T+ + E                   T   H     +       T  A   
Sbjct: 114  DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162

Query: 1027 TNGEVYV 1033
             +  V V
Sbjct: 163  NDQTVRV 169

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 8e-14
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 370
               ++   P     +  G+      +WD  +G  +   + +                  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255

Query: 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 421
              SV  VV++ DG  +        V+L+     ++       ++             V 
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 422 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 477
            +A +   + I  ++   D+ +  WD  +G+     +GH   V S+      ++      
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 478 IFSISVDGKIKAW 490
             + S D K + W
Sbjct: 371 FATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 1e-13
 Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)

Query: 514 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 572
             + + +      +  + +++ +N +            L H + V  V F     + LA 
Sbjct: 22  DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79

Query: 573 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 632
           G +   +++ ++   L+  +       ++P                          E+ +
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113

Query: 633 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 692
             ++      +R +  +P     G  +A G+        +    +I +  +   +    L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 693 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 752
              PS  + +              T               V +     +     S +   
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 753 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 799
           +V           +    + + +  +++V     +++   + S S               
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 800 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 859
                   +    +T +       S+A    ++  I  G  D  +L ++ +S   +  L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 860 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 891
           GH   V  +  ++        N+  +  GD +  +W  
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 7e-12
 Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)

Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 363
              ++ +S    + F       L  G N   T ++ V+    L  R              
Sbjct: 56  HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112

Query: 364 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 423
            T+      + +  V +SPDG  L       +++++         +++ +       +  
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167

Query: 424 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 483
           +         +++   D+T+++WD  TG  + +                    +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225

Query: 484 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 536
           D  ++ W  ++       D+              + ++ +G+ + S    +  + + ++ 
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

Query: 537 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 591
             ++   K    G          + V  V      + IL+   D  +  WD      L  
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345

Query: 592 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 624
           +         +             + A  + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 827 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 879
            +P D   IA G  D  + ++++ +  ++ +L+       GH   V  +VF+     +VS
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 880 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 934
              D  + +W++     ++                       +   ++    L   +   
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 935 LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 980
           +  ++ +    L         + SV ++  ++   +  +  T   D    I
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-06
 Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)

Query: 313 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 372
           P  +D         L         L++            +  D+     L  T+      
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63

Query: 373 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 418
             V  V +S DG  L    +K            +      S A +  E        +   
Sbjct: 64  -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 419 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 478
            +  + FS   K +   T  +D+ I++WD          +GH   +Y        +   +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178

Query: 479 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538
            S S D  ++ W   +    +         T      +G+ + +    +    +  E   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 598
               +    +      +SV  V F      +++   D  +K+W++      +        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 599 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 633
                          +   +N   +   + +  +   +    N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)

Query: 758  LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 817
            LY P    +  V      +    V C   S +  YL +       +Y V     +  +  
Sbjct: 42   LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101

Query: 818  PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 859
             S                      S+ F+P D   +A G +D  I I++  + +++  L+
Sbjct: 102  DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 860  GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 919
            GH + +  L +  + + LVS  GD  + +WD+         S++     + ++P +    
Sbjct: 161  GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220

Query: 920  FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 979
                  R + V ++    +  E L    +        +    F+ D + V +  +D ++ 
Sbjct: 221  AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 980  IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1033
            +    N   +    +        + +      ++    +  ++   G  +  V  
Sbjct: 280  LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 0.002
 Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)

Query: 817  PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 872
             P P    L  +            +   ++YN      I     K   H+  V  + FS+
Sbjct: 14   KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 873  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 932
                L + G +    V+ V    +    S  +         + +         R +    
Sbjct: 73   DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 933  THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 992
                +    E   ++ W   +   +               F  G   +  + +  V+   
Sbjct: 132  DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 993  LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1033
            L T     T S        +A  P      A G  +  V V
Sbjct: 192  LRTGQCSLTLSIEDGVTT-VAVSPGDGKYIAAGSLDRAVRV 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.3 bits (165), Expect = 1e-12
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)

Query: 823  TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 880
            +  A+N  D   IAI  ++  + IY    +    + +L+ H+ +VTG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 881  GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 940
            G D   +VW + G   +    +   +          + +     +       +     + 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127

Query: 941  EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1000
             +    K         +    +  +  ++     D    I  A   EV+ R   T +   
Sbjct: 128  NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 1001 TTSC 1004
                
Sbjct: 188  MPFG 191

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.3 bits (157), Expect = 1e-11
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)

Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
            ++   W+ D + + +  + H V +Y   G     Q  E+  H G V  + ++    +I 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            +TCG D+   VW     +   +         + C     N       S    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 494 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 538
                               S +                 R+FS    +  E        
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 598
           S+                V  V F     ++     D  + + D +K   + T+ +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244

Query: 599 PENPRICFNKNGTLLAV 615
                + F    +L+A 
Sbjct: 245 -PLLAVTFITESSLVAA 260

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)

Query: 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 367
                           VG+      +         ++           + +      + L
Sbjct: 96  RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155

Query: 368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 427
           +          ++S     +     +                  E  +  G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211

Query: 428 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 487
              ++       D T+ + DA       +      P+ ++    + ++    +   D   
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266

Query: 488 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 547
             + YDS   ++ +        + +      R       K+  S        EG+     
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318

Query: 548 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 587
               L  NSVS +           Q    G D  + IWD+  ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)

Query: 783 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 842
                   + + +       L+   +    L+           +            +D  
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 843 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 892
                +A +   +     H   V+ +          +   ++G D  + +WDV 
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 404 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 454
           GS A        H  +V+ ++  +  K       T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 1e-11
 Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)

Query: 544 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 601
           + T +G    H +  ++ + F+   + ++   DD +I+++D    + L  +    G    
Sbjct: 5   RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 602 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 660
             + +   G L++       R+  ++      V      +     +           G  
Sbjct: 59  --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 661 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 720
           + ++ V + PKE   P+         E + PL     E     +          R    +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

Query: 721 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 773
           G   +     N + +      +    LS              R        DTT      
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 774 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 828
                    Q       L +       ++    S+                   +++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 829 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 887
              +N++  G ++    IYN RS +++ + +   + ++  + F     ++ +   D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348

Query: 888 VWDVD 892
           +  +D
Sbjct: 349 LEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 4e-09
 Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 416 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 474
           H  N++ +        I  +  G +    +++  +G   ++        ++S+    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 475 IHFIFSISVDGKIKAWLYD 493
              + ++  DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 882
           T L F   ++N +  G DD  I +Y++ + + + +L GH   V  L ++    ILVS   
Sbjct: 17  TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 883 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 942
           D  + VWD+                          +++   +       +  L +++  +
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 943 LTCLKQWFPISSVPISQATFSCDCRMVFT 971
            + +         P+   T   +   V  
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
           VIT  DDK I+V+D++         GH   V++L      +   + S S D  ++ W   
Sbjct: 26  VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82

Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
                  ++        +         +    S++    +  W   + +    +     +
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137

Query: 554 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 584
           H+   V H        +     H+  +  ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)

Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 363
             L        ++ +      L+   T+                             + +
Sbjct: 47  LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105

Query: 364 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 421
           K       G   N + VW  P  S +     +H   L  +    +      +  H+ +V 
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

Query: 422 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 481
                       V++   D T+ VWD       Y   GH   +Y              S 
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219

Query: 482 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541
           S+D  I+ W           +   +   +   +  G    S        +          
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271

Query: 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 601
              R +       ++++  +     D IL +G ++   I+++   +L+            
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328

Query: 602 PRICFNKNGTLLAVIANENRIKI 624
             + F    TL+A +  + +  +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-10
 Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)

Query: 536 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 593
           W   E    +  +G    H+   ++ + F    ++I++  DD+ +K+W     + L T+ 
Sbjct: 1   WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 594 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 653
                             ++   + +  +K+        +      +  +R + ++    
Sbjct: 55  G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110

Query: 654 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 713
           V+G+  A   V   E  +        V A    + +       +    +           
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159

Query: 714 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 773
            ++        +  L  +   +          +S    T +  R++    G         
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216

Query: 774 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 832
            S          +   D  L S  +   + ++ + T + + T+  P+   +++     + 
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 833 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 883
           N +    DD T+ +++ ++ E I  L      G    V  +  S+   +      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 884 AQIFVWDVD 892
            ++ V D D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)

Query: 324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 383
             ++ G++     +W   +G+   +R       G  S   +  ++          VW+ +
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 433
                     H   +   H           DA +   +          +           
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

Query: 434 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 489
               V++   D  +KVWD  T +  ++ +GH   VYSL          + S S+D  I+ 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201

Query: 490 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 549
           W  ++      +   G              L S       +S +  W+   G   +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255

Query: 550 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 606
                ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI  
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 607 NKNGTLLAV 615
           +    + AV
Sbjct: 314 SNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 405 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464
            + +    +  H  +V        C    +++  DD T+KVW AVTG    +  GH   V
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 465 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 519
           +S         +      +   + +            + V                   R
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 520 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 559
           ++   T +                     V     +  +K            LQ ++  V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 560 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 619
                    +++   D  I++WD+     + T+       ++          +L     +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236

Query: 620 NRIKI 624
           + +KI
Sbjct: 237 STVKI 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
           V++   D +I+VWD  TG+  ++  GH +    +        + + S + D  +K W   
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245

Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
           +         P    + +      +       S +G   L  W+   G   R    L+  
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302

Query: 554 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 585
                V  +     K        +      + + D + 
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)

Query: 830  HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 889
               N I  G DD+T+ +++A + + +  L GH+  V      D  NI++S   D  + VW
Sbjct: 25   FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82

Query: 890  DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 949
            + +           T          +  +   +D T  +   E              +  
Sbjct: 83   NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130

Query: 950  FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1009
              +     +      D R V +   D  + + +                      L  + 
Sbjct: 131  HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177

Query: 1010 HAIAAHPLKPTQFAVGLTNGEVYV 1033
            + + +          G  +  + V
Sbjct: 178  NRVYSLQFDGIHVVSGSLDTSIRV 201

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.1 bits (144), Expect = 5e-10
 Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)

Query: 562 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 619
                + ++     + + + D+    +  +          P       +     V+ N  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61

Query: 620 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 675
             I  ++     +   A + S             ++  G              D      
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 676 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 735
           P + V +       KP+   P   Q  L+ +                       +     
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166

Query: 736 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 795
                    T++             P     +         S                 +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226

Query: 796 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 854
                     + T KT        +    +   +P D N I      + +  Y+ +  ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 855 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 914
           I            + F    + L   G    + V++ D    +  ++++ P G M+    
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341

Query: 915 E 915
           +
Sbjct: 342 Q 342

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 6e-08
 Identities = 35/319 (10%), Positives = 75/319 (23%), Gaps = 34/319 (10%)

Query: 300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 359
                 ++     P +    P   T  ++  + GD    D+++ +  F  N         
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86

Query: 360 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 408
                       G S+     SPDG  +    +        Y                  
Sbjct: 87  -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135

Query: 409 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 462
           + +        V  +  +              +     K          +R         
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195

Query: 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 522
             +       E              +      L           G T     A+   L+ 
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255

Query: 523 CGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 578
            G     +   +    +  A     +R         ++   V FD   D++   G  + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 579 KIWDMNKVQLLTTIDAGGG 597
            +++ + ++ +  I   GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.004
 Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)

Query: 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 357
           +   +        P         +   +  +    +  K   ++             D+ 
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 358 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 417
                 +     D        + SP      +    + +  Y         + ++     
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291

Query: 418 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464
                +AF     +  +   G    + V++  T  +  + +  G  +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)

Query: 304 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 346
               E S     + +       ++ G       +WD N+ +                   
Sbjct: 9   HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 347 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 404
              I       +    +     L          +    +  ++        + ++     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 405 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464
           +D   +  +  H   VN + F          +   D+TIKVW+  T     +  GH   +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 524
             L          + S S D  I+ W  D           G          + +R+ S  
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234

Query: 525 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 578
                +  +  W+       R   G             V  + FD  + QI+++  D  I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

Query: 579 KIWD 582
            IWD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 6e-08
 Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 416 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 475
               V  L +        +++   D TIK+WD  T        GH   V  L    +  I
Sbjct: 14  TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 476 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 535
                 +V                  +A               +  S             
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119

Query: 536 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 595
           W+ +            L  +  +V   D     I++A  D  IK+W+ +  + + T++  
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176

Query: 596 GGLPENPRICFNKNGTLLAVIANENRIKI 624
               +    C      L+   +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 782 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 840
               L   D  + S S    I L+ +     +  +               DN  I  G  
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236

Query: 841 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 890
           D  I +++  ++           +  L  HS RV  L F +    +VSS  D  I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 4e-05
 Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)

Query: 823  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 882
              L +   D+  I  G+ D+TI I++  + E    L GH+  V  L + + + I      
Sbjct: 19   YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69

Query: 883  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 942
                     D        +       +             +        +  +A+++   
Sbjct: 70   -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 943  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1002
             T +     +     +      D + + ++  D T+ +   S  E               
Sbjct: 125  PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172

Query: 1003 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1033
              L+ +   IA    +      G ++  + +
Sbjct: 173  -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 3e-09
 Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)

Query: 311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 370
           +    + + P  + +                 G+  F+R     D G   +         
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 371 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 423
               V  V +SP      L        V ++ +    ++         E     G ++D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 424 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 483
           ++    +++ V+  G D         +G+      GH   + +        +  +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 484 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 543
              +         +  D      G        +         +   +  +  ++   G  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240

Query: 544 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603
            +  +  Q                +    G D  I++WD+   + +           N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 604 ICFNKNGT-LLAVIANENRIKI 624
           +     G   +  ++ +  +  
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 434 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
             T G D TI+VWD  T    + ++ +        +   A  N   I S+S+DG +  +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)

Query: 811 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 862
           ++  I+PP P       T L+++P  N +       + +   +   S+V  + +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 863 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 920
             VT + FS       L S     ++ VW            +        LA   + I +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 921 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 968
             +  R  +V E                   +S               
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 828 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 884
           +  D+   A    D+TI +++  +S+ + K     +++      V +     ++S   D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 885 QIFVWDV 891
            +  +++
Sbjct: 319 TLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 9e-09
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
            +  + + P G       +  +          +   + ++  H   V  L F+   K   
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
            ++ G D  +  W    G+  +      + V S      +   +I + S D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-08
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 824 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 883
           SL F             D+ +  +       I +    S  V     S     +V+  GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327

Query: 884 AQIFVWDV 891
            +  V++V
Sbjct: 328 KKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)

Query: 352 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 409
           KVWDI         + +        +      PDG  L V      + ++     +   +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 410 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 469
                +                 S  + G+     + +     +T   +  G    + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 470 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529
               +   +++  +D  +++W          +D        + Y   G  L     S   
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 530 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 589
           E   V               L L  + V  + F       ++ G D+++  W       +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 590 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624
                   +        + +   +   + + +  +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 437
           + ++  G         +++  +    G      +       +V     S   K I  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324

Query: 438 GDDKTIKVWD 447
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 363 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 422
           F+ A+   P  S +    + DG +  V +    +      G     +Q+    H   V  
Sbjct: 3   FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56

Query: 423 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 468
           +  S P + +     G    +KVWD                     + S  
Sbjct: 57  VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 840 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 899
            D+ I     R +  I+ L  H + V  +  S+    + + GG   + VWD+   G ++ 
Sbjct: 30  PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87

Query: 900 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 959
            S                 +   D    ++  E              +    ++S   + 
Sbjct: 88  VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 960 ATFSCDCRM 968
              +     
Sbjct: 145 YALAISPDS 153

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 508 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 567
              + ++  G+   S G        L  W    GA     +      +SV          
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319

Query: 568 QILAAGDDHVIKIWD 582
            I+    D    +++
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 816 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 874
           +   P          + +++A G  D+ I IY+ +   ++I  L  H   V  L++    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 875 NILVSSGGDAQIFVWDV 891
           + LVSSG DA I  W+V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 413 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 472
           I  H   +  L  +       +I+   D  I  W + +       + H   + SL     
Sbjct: 9   ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 473 ENIHFIFS 480
           +    I  
Sbjct: 58  QEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 435 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 490
            T   D  I ++      +       H   V +L          + S   D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 413 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 449
           ++AH   VN+L +  P     +++ G D  IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 892
           EV+  + GH+K +T L  +     L+S   D +I  W   
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)

Query: 823  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 882
            T+L  NP     +  G  D  I+ +++ S       + HS  +  L  S A      S  
Sbjct: 17   TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66

Query: 883  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 936
            D                +     +   T   +              ++    L       
Sbjct: 67   DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 937  ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 978
                              +++  +L              S  + S     +    V G +
Sbjct: 127  SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 979  SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1038
             +++  + EV+    +    +                 ++    A G  +  +++     
Sbjct: 187  LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 1039 PGDTWAVL 1046
            P      L
Sbjct: 247  PMKIIKAL 254

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.7 bits (127), Expect = 6e-08
 Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 22/329 (6%)

Query: 566 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 624
           +D ILA      + + D  K+ +   I      P          G +     N+   +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 625 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 684
           ++                   L    +ST      +    +++ D K     E  V  E 
Sbjct: 61  IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 685 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 743
                +    A           +     +I+ L +   G  ++     G  L    P   
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAG 164

Query: 744 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 803
             +  +         Y             +               + A   +   G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

Query: 804 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 863
            +      +  +        S A NP            + +  ++   +  I ++     
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280

Query: 864 RVTGLVFSDALNILVSSGGDAQIFVWDVD 892
               +  S   + +   G    +  +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.3 bits (121), Expect = 3e-07
 Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)

Query: 352 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 409
            V D    ++  K   + D G +    + +P G +       S+ +V++    G +  R 
Sbjct: 14  VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 410 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 468
            L             A S   K +++        +  ++              +   +  
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 469 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 521
              +        +   ++ +  D  +      +L       +                  
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 522 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 568
                     +    +           GL             +++   V          +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 569 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 627
             A G  +V++ +D+ K   +  +            +  + +G+ + +      +   + 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)

Query: 305 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 364
           T+ +   +PM     P                  D+ +G+ L   +              
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77

Query: 365 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 416
                +   S+     SPDG  L +  S   ++L  +           ++   + +    
Sbjct: 78  ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133

Query: 417 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 469
              +  LA++          + + V+       ++     +       +     V++   
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193

Query: 470 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 529
            +       ++   D           G     D                  FS   +   
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 530 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 583
                  + L  ++  + A  +         +S   V+  T    +   G    +  +D 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 584 NKVQLLTTIDAGGG 597
             ++    +D  G 
Sbjct: 309 ETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)

Query: 434 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 491
           ++       + V D    +  +  +    G                  +++    +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62

Query: 492 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 546
             +       D              A S +G+ L    +    E    E   +  A+   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 547 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 587
               +         ++++ +     ++   G D  +   +   + 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)

Query: 307 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 366
               S        P    +     + G        + + +   +   +  G  +M  +T 
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229

Query: 367 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 423
              +     + V     + + +      + ++++ +           ++      +   +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285

Query: 424 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467
             S     +     G    +  +DA T  +    +  G    SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (126), Expect = 6e-08
 Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)

Query: 289 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 347
            F +T+ F   P+T          + + +   P    +     N        V S     
Sbjct: 2   EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52

Query: 348 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 407
           I                     +          SP G           V+++     +  
Sbjct: 53  I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 408 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467
            +   I    G V D        +         +            +       A   + 
Sbjct: 94  LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151

Query: 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 527
                     I S S D  +  +       +  +         + Y+ +G    S G   
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211

Query: 528 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 587
               +        G  +           SV  + +     +I +A  D  IKIW++  ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271

Query: 588 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 624
           +  TI  G  + E+ ++        L  I+    I  
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)

Query: 814 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 868
            + P  P     TA  L   P   + I      S +      S         HS + T  
Sbjct: 7   ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 869 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 927
             S +     S      + +WD          ++    G +     ++  +        
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 828 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 884
              D   IA    D TI I+N  + +V   +   ++   +  G++++     LVS   + 
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303

Query: 885 QIFVWDVD 892
            I   + +
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 490
           + +   DKTIK+W+  T     +             +          + SIS +G I   
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (123), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 416 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 474
           H   +  L+ SA  K +   +   +  I  WD  TG     F + H   +  +   +K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 475 IHFIFS 480
           +  +  
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 5e-05
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 823 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 881
           T+L+ +  D   +     +  I  ++  +        + H+  +TG+  +     L +  
Sbjct: 16  TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73

Query: 882 GDAQIFVWDVDGWGIQTC 899
            D  + V    G G+ + 
Sbjct: 74  WDDHLKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 21/69 (30%)

Query: 853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 912
            +     GH+K +T L  S     L S+  +  I  WD+                +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 913 PSETHIQFH 921
            +     F 
Sbjct: 63  TTSKGDLFT 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 827 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 884
               DN  +A G  D++++++N    S   I     H+      V       +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290

Query: 885 QIFVWDV 891
            I  W+V
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 39/297 (13%), Positives = 80/297 (26%), Gaps = 18/297 (6%)

Query: 301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-------------- 346
           ++ Q     + +  ++         L      G    WD+++G                 
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 347 -FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 405
                  ++ +     L           S   V        LG+A S       A     
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 406 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 465
            A         V    + +  A       +  G   +      ++G+     +    P  
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 525
                   N  F+ +     K+  +   +       ++      ++A  +         T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 526 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 582
                S +V WN ++ +            +SV+ V +      I++AG D  IK W+
Sbjct: 242 GSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 414 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 462
            AH  ++  ++          ++C  D  +KVWD          +            H  
Sbjct: 11  KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 494
            V          +  + + S  G +  +    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)

Query: 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 605
             +  V         ++   D  +K+WD   +      D       +             
Sbjct: 15  ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 606 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 658
                   L+A  +    +        +           +L  +++K S   +       
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 659 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 718
                  V  D K            ++S      ++   E Q  +      +   + +  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 719 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 776
           +  G       +  V +        L       + +     +   +  PQ  +      +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 836
           +         ++    + S S          + +  L     S    SL+FN      + 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305

Query: 837 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 892
               D  +  ++ ++ E I+ L  H   +      L   +  + L   G      V+DV 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359

Query: 893 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 923
               G ++       + +  +    + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 337 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 396
           +WD         ++               + +    V       + +  L+        +
Sbjct: 38  VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91

Query: 397 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 446
             Y      + +         L+ D    +   L + A   ++    ++      T  +W
Sbjct: 92  LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151

Query: 447 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 491
                   + S   + +P   L    +  +                I +   +G ++   
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

Query: 492 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 546
             +L    +++            R    +    L +          +  +    G    +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 547 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 594
                             + V  + F+ + + + +AG D  ++ WD+   + +TT++   
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 595 GGGLPENPRICFNKNGTLLA 614
                E   +  +++G  LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)

Query: 281 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 340
               E        S +   +   ++ +  S    S+D       L+  G N G   + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212

Query: 341 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 400
           ++ + L+    +   I   + +          +       +  G +              
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 401 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 460
                 ++  L   AH   V  L+F+   + +   + G D  ++ WD  T  R  +   H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 461 GAPVYSLC 468
              +    
Sbjct: 331 CDDIEIEE 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 3e-07
 Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)

Query: 571 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 630
                    + D    +++  ID G      P      +G+ +A  A+    +I     +
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77

Query: 631 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 690
           + V+    ++         P +     G      S+  D K  +  + S  A     V+ 
Sbjct: 78  DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136

Query: 691 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 750
              A                   +   +   G                            
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 751 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 810
                             +   T +     +     S +  +L +      +        
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248

Query: 811 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 870
                +        +       +          +++ +A++ E ++K E     +  +  
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307

Query: 871 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 908
           S  +   +   S GD  +++ D      ++   L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)

Query: 326 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 385
           L+  T  G     D++SG   F+   +       +                +V +     
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261

Query: 386 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 439
            + +   +     +               ++L        ++ +  S   K +       
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 440 DKTIKVWDAVTGSRTYSFEGHG 461
           DKT+ + DA +G    S    G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/229 (9%), Positives = 48/229 (20%), Gaps = 38/229 (16%)

Query: 378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAPCKQIS 433
               P        + +         G     +              +N  A+S    ++ 
Sbjct: 151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL- 209

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            +       I   D  +G   +                +       +          L D
Sbjct: 210 -VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 553
                                            K    F+V  +   G     ++     
Sbjct: 269 Q--------------------------RDEWRHKTASRFVVVLDAKTGERLAKFEM---- 298

Query: 554 HNSVSVVHF--DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 600
            + +  ++   D        +  D  + I D    + L +++  G  P+
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)

Query: 315 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 374
            +   P +  LL           WD          +  V+     +              
Sbjct: 16  DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 375 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
           +    +  +    + V   +  +      G    +     +A++G      +       +
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
                 +               +   +   V +       N   +     + +++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 494 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 538
                             R     P         S +GR  +       +  +    +  
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 598
               +      L    NS+    F      +  AG D +I  W++   + +         
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293

Query: 599 PENPRICFNKNGTLLAVIANENRIKI 624
            E+  +    +  +L +  +++  K 
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)

Query: 374 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 433
            ++ +   P  SLL +      + +Y +   +     L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 434 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 493
            +     + +KV    + S                    ++     S     ++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 494 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 552
             G     +                   S        S +  +                L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 553 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 603
           ++    V      ++    +  D  + +   +                +           
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 604 ----ICFNKNGTLLAVIANENRIKI 624
               I F+     L    ++  I  
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)

Query: 375 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 422
            +  +   +      +     V +  +    D             R  L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 423 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 481
           + FS   K +   T G D  I  W+  T  +  +F   +   V  +          +   
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 482 SVDGKIKAW 490
           + D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 817 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 873
            P    + +   P   +++ I   D ++ +Y          L     +   +    F D 
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 874 LNILVSSGGDAQIFVW 889
            ++ +  G      + 
Sbjct: 68  TDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 910
           +++   +     ++ +    + ++L+ +  D  + V+  D     +   +SL+    ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 911 LA 912
             
Sbjct: 62  CN 63

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)

Query: 314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 365
           ++  F  V    ++            V          + + D+   S             
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 366 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 425
             +    +  +  V     +    A  K ++  Y            ++     N+ DL  
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322

Query: 426 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 464
           SA  K +  +   DD  I  +         + E    P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 9e-06
 Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)

Query: 274 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 333
            D+SP        F S G+    D   T    + E       +          + GT  G
Sbjct: 8   EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65

Query: 334 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 370
           D  G++D  +G+                           +              T + R 
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 371 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 426
               +     S +   +   +     +   Y   +    D   +    A   N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185

Query: 427 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 479
                 ++            D V  +       + +                +       
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 480 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 538
              ++    ++   +          P      +          +       +  L++++ 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 593
               +           N+++ +     +  ++   DD  I  + + K +   T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (104), Expect = 4e-05
 Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)

Query: 312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 371
           S  + DF P+   L+   +  G   + DV+    L +                       
Sbjct: 4   SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41

Query: 372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 426
            + +  V    D  +  +  ++    L  Y   +   +  + + ++GNV  +        
Sbjct: 42  PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99

Query: 427 ---------------------------------------------APCKQISVITCGDDK 441
                                                            +         +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 442 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 501
            I V+D        +   +    +   P    +   ++ +S      +     L    + 
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 502 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 554
            +                         +                 +    R    L+   
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 555 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 614
              SV            A +  V+  +D+   ++    +    L        + +   + 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330

Query: 615 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 646
           V  ++ +I    LE PE         +  + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 5e-04
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 827 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 886
            +           +   +L Y+ ++     K+      +T L  S     ++    D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 887 FVWDVDG 893
           + + ++ 
Sbjct: 339 YTFPLEK 345

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)

Query: 372 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 428
           G +V+    S  G  L V      V +       +     EI                  
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 429 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 478
            K   +          + D  T          G        H +  +           FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 479 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 537
            ++   GKI    Y  L   +    +            + R   +   ++     +    
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

Query: 538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 588
               AI+ T           + VH         +   D  + +   +    
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)

Query: 817 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 875
            P    T    +    N+ ++   D   I + +  + E+ + L+     V     S +  
Sbjct: 16  APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74

Query: 876 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 933
            L   G D ++ + D+      T   ++      ++  S        +    +       
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131

Query: 934 HLAIYEAEELTCLKQWFPISSVPISQAT 961
              I + E L   K           Q  
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)

Query: 309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 368
                  +        LL             V           ++    +C  +      
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171

Query: 369 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 428
             PG +    + S   SL     +                Q     A   N   +   A 
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 429 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 482
              I                    +G +  +F   G  + +   +               
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 483 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 541
           +           S+G      + G     +  + +G                        
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329

Query: 542 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 597
                                         +    V+ I+D    Q  ++++   G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.8 bits (102), Expect = 8e-05
 Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)

Query: 365 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 414
             L    G  ++  V    GS   +A               V+++            +I+
Sbjct: 57  VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113

Query: 415 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 467
                       V+ +   A    + +                 S     +         
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171

Query: 468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 514
            P A       +  S    + A    +  A                  A       M   
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227

Query: 515 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 569
           A    +        G +     + +E           G Q+     +   +   T +   
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287

Query: 570 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 626
                         +  Q    I  G         I   ++G       +     + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 627 T 627
            
Sbjct: 344 A 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.5 bits (96), Expect = 4e-04
 Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)

Query: 308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 367
             +++ +                     G+        +   +         +M      
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251

Query: 368 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 413
                 + N        V    +   + +   +H                     Q    
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309

Query: 414 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 463
            ++  + + +  +      +       + + ++DA +     S E    P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)

Query: 571 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 629
              D   I + D +  +++  ID G           + +G  L VI  + RI  I    +
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 630 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 684
             +  A   +    R +  +                    ++ +    + K  +S     
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 685 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 739
                     R      S      + +  +  K+  + Y +              L    
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213

Query: 740 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 789
             +       A               +                         P ++ S  
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

Query: 790 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 843
                S  G     +    +K +  +      +  +  +P  +++              +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 844 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 889
           + +++ ++ +   +         L   +KRV    ++     +  S          + V 
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393

Query: 890 DVDG---WGIQTCRSLQTPDG 907
           D        +     L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 4e-04
 Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)

Query: 817  PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 875
             P         +    N+ ++   D   I + +  S +++  ++     V     S +  
Sbjct: 16   KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74

Query: 876  ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 933
             L+  G DA+I + D+          ++      ++    +      +    +       
Sbjct: 75   YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131

Query: 934  HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 991
              AI + E L   +          +Q            +  +    I   + +   +   
Sbjct: 132  QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

Query: 992  ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1023
                  L  T+     +               
Sbjct: 192  YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 391 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 450
                    +       +    I     +   +A +   K++  +      T+ V D  T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275

Query: 451 GSRTYSFEGHGAP 463
            + T +      P
Sbjct: 276 NTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)

Query: 571 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 628
           A  +   I + D+   ++  TI  G     NP     + +GT + V     N + I++T 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61

Query: 629 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 688
                 A   +   +   S      V+  G      ++       +    +  A      
Sbjct: 62  ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115

Query: 689 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 748
           + PL    S     L  +      +S +                   +      D T   
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173

Query: 749 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 808
            A                 +     ++           +K            +S+    T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 809 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 859
            K    I P  P    +A  P    V       +T+ + +  ++ + + + 
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)

Query: 430 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 487
           KQ   I   + + I VW+                  V  +     +  +    +  + ++
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61

Query: 488 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 544
            A+               A     T ++    G+ +F    +    S     +     + 
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 603
              +GL   H++       T     L      +  + D   +      +        PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1068
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.98
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.93
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.89
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.88
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.83
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.58
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.57
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.44
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.43
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.38
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.35
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.35
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.31
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.01
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.26
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.15
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.02
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.96
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.82
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.8
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.64
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.52
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.42
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.29
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.27
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.26
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.96
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.75
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.34
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.27
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	80.12

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-41  Score=283.89  Aligned_cols=293  Identities=13%  Similarity=0.165  Sum_probs=247.5

Q ss_pred             CEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             12442135888956989718987599998286747999568986113420134313423421254331499866699999
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~  380 (1068)
                      +.+++| +|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++.....              .......+|...|.+++|
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred             EEEEEC-CCCCCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCCCCE--------------EEEEEECCCCCCEEEEEE
T ss_conf             499987-9999289999989999-999997-99889977367763311--------------687640488996899998


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf             99999889995896899998368976421089735235587999718999179999928993999978999624695268
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  460 (1068)
Q Consensus       381 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  460 (1068)
                      +||+++|++++.|+.|++||+..... .....+..|...+.+++|+|++.  ++++++.|+.|++|++.+++......+|
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             67998898861233211111111111-11111111111111111111111--1111111111111111111111111111


Q ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf             97679986310189319999985891999958899816872489971899998149988999960888940499994788
Q 001490          461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  540 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  540 (1068)
                      ...+.+++|++  ++..+++++.|+.+++||+++......+ .+...+.+++|+|+++++++++.    ++.+++||+.+
T Consensus       183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~  255 (337)
T d1gxra_         183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK  255 (337)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred             CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCEEEEEECCCCCCCCEECC----CCCCCCCCCCC
T ss_conf             11111012344--4321122356655321111110000024-66661579997153030000002----56421111111


Q ss_pred             CEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf             70556874233456873799991399989999789909999958980799990899989975299915999999998899
Q 001490          541 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  620 (1068)
Q Consensus       541 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  620 (1068)
                      +... ....|.   ..|.+++|+|+++++++++.||.|++||..+++.+......   ..|.+++|+|++++|++++.|+
T Consensus       256 ~~~~-~~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         256 PDKY-QLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             SCEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred             CCCC-CCCCCC---CCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCC---CCEEEEEEECCCCEEEEEECCC
T ss_conf             1100-001245---65416999899999999948996999989999799992699---9879999927999999990899


Q ss_pred             EEEEEEC
Q ss_conf             1999987
Q 001490          621 RIKILET  627 (1068)
Q Consensus       621 ~i~iwd~  627 (1068)
                      .|++|++
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
T ss_conf             6999977

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-40  Score=280.97  Aligned_cols=276  Identities=18%  Similarity=0.311  Sum_probs=164.4

Q ss_pred             EEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             44213588895698971898759999828674799956898611342013431342342125433149986669999999
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       303 ~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp  382 (1068)
                      ..+|.||++.|++++|+|+++ +|++|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~   69 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH   69 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred             CEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEEEC
T ss_conf             489858888768999938989-999993899299998999979999-------------------957888677776301


Q ss_pred             CCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf             99988999589689999836897642108973523558799971899917999992899399997899962469526897
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  462 (1068)
Q Consensus       383 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  462 (1068)
                      ++.+++++..++.+.+|+........   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE  144 (317)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCCCC--EEEEECCCCCEEEEECCCCEEEEEECCCCC
T ss_conf             11101111111110111001111111---1000000000000169985--577652675235751144303468716777


Q ss_pred             CEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCE
Q ss_conf             67998631018931999998589199995889981687248997189999814998899996088894049999478870
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  542 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~  542 (1068)
                      .+.++++++  ++.++++++.|+.|++|+.........+..+...+.++.+++++........                 
T Consensus       145 ~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------  205 (317)
T d1vyhc1         145 WVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA-----------------  205 (317)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC-----------------
T ss_pred             CCEEEECCC--CCCEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECC-----------------
T ss_conf             630000166--7999999927982999751254034788247787337998632564111034-----------------


Q ss_pred             EEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEE
Q ss_conf             55687423345687379999139998999978990999995898079999089998997529991599999999889919
Q 001490          543 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  622 (1068)
Q Consensus       543 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  622 (1068)
                                  ...........+..+++++.|+.|++|+..+++++..+..+.  ..+.+++++|++++|++++.||.|
T Consensus       206 ------------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         206 ------------TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             ------------CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEE
T ss_pred             ------------CCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCC--CCEEEEEECCCCCEEEEEECCCEE
T ss_conf             ------------563034302588614751699789998889996889996889--987999987999999999798949


Q ss_pred             EEEECCCCCEEEEC
Q ss_conf             99987999645521
Q 001490          623 KILETPESNSVDAA  636 (1068)
Q Consensus       623 ~iwd~~~~~~~~~~  636 (1068)
                      ++|++.+++.+..+
T Consensus       272 ~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         272 RVWDYKNKRCMKTL  285 (317)
T ss_dssp             EEECCTTSCCCEEE
T ss_pred             EEEECCCCCEEEEE
T ss_conf             99999999199999

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-40  Score=276.38  Aligned_cols=75  Identities=20%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEE------CCCCCEEEEEECCCCEEEEE
Q ss_conf             899986999980799989999978980999994885035650145558699999------28999999993898399998
Q 001490          817 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF------SDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       817 ~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~------spdg~~l~s~s~dg~i~iwd  890 (1068)
                      .|...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|+++++      +|++++|++++.||+|++|+
T Consensus       306 ~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         306 GHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             CCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf             4553278999889-999999996989799999999969999968899789999846742589999999991899799976


Q ss_pred             CC
Q ss_conf             79
Q 001490          891 VD  892 (1068)
Q Consensus       891 ~~  892 (1068)
                      ++
T Consensus       385 ~~  386 (388)
T d1erja_         385 YK  386 (388)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             21

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.1e-39  Score=273.40  Aligned_cols=291  Identities=16%  Similarity=0.200  Sum_probs=243.5

Q ss_pred             CCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEE
Q ss_conf             58889569897189875999982867479995689861134201343134234212543314998666999999999988
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       308 ~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l  387 (1068)
                      .+++.+.+++++|+|+.+ +.+. ++.|.+|++.++.....                   +.+|...|.+++|+|+|++|
T Consensus        15 ~~r~~~~~~a~~~~g~~l-~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l   73 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKI-QYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   73 (311)
T ss_dssp             CCTTCCCCCEECTTSSEE-EEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCCEEEEEECCCCCEE-EEEE-CCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCCCEE
T ss_conf             778875999996998999-9996-99999999999966179-------------------74788888999994899967


Q ss_pred             EEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEEC--CCCEEEEECCCCCEEEEECCCCCCEE
Q ss_conf             9995896899998368976421089735235587999718999179999928--99399997899962469526897679
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY  465 (1068)
Q Consensus       388 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~  465 (1068)
                      |+|+.||+|++||+.++..... ..+.+|..+|.+++|+|+++  ++++++.  +..+++|++.+++....+.+|...|.
T Consensus        74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             ECCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             2255673674663101111000-01343357543323331110--00111122111111111111111111111111111


Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEE
Q ss_conf             98631018931999998589199995889981687248997189999814998899996088894049999478870556
Q 001490          466 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  545 (1068)
Q Consensus       466 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~  545 (1068)
                      +++|+++.+ ..+++++.|+.|++||+++.........+...+.++.++|+++++++++.    ++.+++||..++....
T Consensus       151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred             CCCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCC
T ss_conf             111121110-12000112211111111111111111111111111234764221211111----1111000124464112


Q ss_pred             EEECCC----CCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCE
Q ss_conf             874233----4568737999913999899997899099999589807999908999899752999159999999988991
Q 001490          546 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  621 (1068)
Q Consensus       546 ~~~~~~----~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  621 (1068)
                      .+....    .|...|.+++|+|+++++++++.||.|++||+++++++..+..+... ....+.+.+++..+++++.||.
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF  304 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCEEEEEECCCE
T ss_conf             221111111002465321024788999999937996999999999699999799986-3329999951999999989997


Q ss_pred             EEEEECC
Q ss_conf             9999879
Q 001490          622 IKILETP  628 (1068)
Q Consensus       622 i~iwd~~  628 (1068)
                      |++||.+
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
T ss_conf             9999588

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=273.07  Aligned_cols=282  Identities=11%  Similarity=0.163  Sum_probs=140.4

Q ss_pred             CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEC
Q ss_conf             44328999995588659994127607987646776577754100158942378999932330578999999830999824
Q 001490          709 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  788 (1068)
Q Consensus       709 ~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~  788 (1068)
                      |...|.+++|+++|++|++++ +|.|++|++......                   ........  .+|...|.+++|+|
T Consensus        50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~-------------------~~~~~~~~--~~h~~~I~~v~~s~  107 (337)
T d1gxra_          50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK-------------------SPVSQLDC--LNRDNYIRSCKLLP  107 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC-------------------SCSEEEEC--SCTTSBEEEEEECT
T ss_pred             CCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCC-------------------CEEEEEEE--CCCCCCEEEEEECC
T ss_conf             999289999989999999997-998899773677633-------------------11687640--48899689999867


Q ss_pred             CCCEEEEEE-CCEEEEEECCC--CEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             999999994-99199999467--535777558999869999807999899999789809999948850356501455586
Q 001490          789 NDAYLFSAS-GGVISLYIVMT--FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  865 (1068)
Q Consensus       789 dg~~l~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V  865 (1068)
                      |+++|++++ |+.|++||+..  .+....+..|...+.+++|+| ++.++++++.|+.+++|++.++++.....+|...|
T Consensus       108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v  186 (337)
T d1gxra_         108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99889886123321111111111111111111111111111111-11111111111111111111111111111111111


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEE-EECCEEEEEECCCCE
Q ss_conf             9999928999999993898399998799824533333147986568998259999208999999-957909999878740
Q 001490          866 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT  944 (1068)
Q Consensus       866 ~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~iwd~~~~~  944 (1068)
                      .+++|++++..+++++.|+.+++||+.+++....     .. +.   ..+.+++|+|++.++++ +.++.+++|++.++.
T Consensus       187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-----~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~  257 (337)
T d1gxra_         187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----EE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-----CC-CC---CCEEEEEECCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             1012344432112235665532111111000002-----46-66---615799971530300000025642111111111


Q ss_pred             EEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCEEEE
Q ss_conf             33230137776889999952899999998999299999589908989623322389876676341699988999988999
Q 001490          945 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1024 (1068)
Q Consensus       945 ~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 1024 (1068)
                      ...  ...|...|.+++|+|+|++|++++.||.|++||+.+++.+..+.         |..  .+.+++|+| ++++|++
T Consensus       258 ~~~--~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------~~~--~v~~~~~s~-d~~~l~t  323 (337)
T d1gxra_         258 KYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESS--SVLSCDISV-DDKYIVT  323 (337)
T ss_dssp             EEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSS--CEEEEEECT-TSCEEEE
T ss_pred             CCC--CCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECC---------CCC--CEEEEEEEC-CCCEEEE
T ss_conf             000--01245654169998999999999489969999899997999926---------999--879999927-9999999


Q ss_pred             EECCCCEEEEEC
Q ss_conf             928991999907
Q 001490         1025 GLTNGEVYVIEP 1036 (1068)
Q Consensus      1025 ~~~dg~i~~w~~ 1036 (1068)
                      |+.||.|++|++
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EECCCEEEEEEE
T ss_conf             908996999977

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-39  Score=271.67  Aligned_cols=103  Identities=22%  Similarity=0.373  Sum_probs=95.2

Q ss_pred             ECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             24999999994-99199999467535777558999869999807999899999789809999948850356501455586
Q 001490          787 SKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  865 (1068)
Q Consensus       787 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V  865 (1068)
                      ..++.++++++ |+.+++|+..+++.+.++.+|...|++++++| ++++|++|+.||.|++||+.+++++..+.+|.+.|
T Consensus       214 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V  292 (317)
T d1vyhc1         214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV  292 (317)
T ss_dssp             ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred             CCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCE
T ss_conf             25886147516997899988899968899968899879999879-99999999798949999999991999992899988


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             9999928999999993898399998
Q 001490          866 TGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       866 ~~i~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      ++++|+|++++|++++.||+|++||
T Consensus       293 ~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         293 TSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEC
T ss_conf             9999949999999992899499829

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-39  Score=272.07  Aligned_cols=185  Identities=15%  Similarity=0.249  Sum_probs=108.2

Q ss_pred             EEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             24421358889569897189875999982867479995689861134201343134234212543314998666999999
Q 001490          302 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  381 (1068)
Q Consensus       302 ~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s  381 (1068)
                      +.+++ +|++.|+|++|||||+ +||+|+ |+.|+|||+.+++.+.......... ............+|...|.+++|+
T Consensus        55 l~~~~-~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s  130 (388)
T d1erja_          55 LHKSL-DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS  130 (388)
T ss_dssp             EEEEE-ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred             EEEEC-CCCCCEEEEEECCCCC-EEEEEE-CCEEEEEEECCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             07607-9999689999999999-999994-9948999813640576631665443-244321110146778988999988


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf             99998899958968999983689764210897352355879997189991799999289939999789996246952689
Q 001490          382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  461 (1068)
Q Consensus       382 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  461 (1068)
                      |++++|++|+.||.|++|+...++...   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+.
T Consensus       131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  205 (388)
T d1erja_         131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED  205 (388)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             999801213444111121111111111---1111111111101111111--11122210156541011111100001245


Q ss_pred             CCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCC
Q ss_conf             767998631018931999998589199995889981
Q 001490          462 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA  497 (1068)
Q Consensus       462 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  497 (1068)
                      .. ..+.+.+ .++.++++++.|+.|++|+..+...
T Consensus       206 ~~-~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         206 GV-TTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             CE-EEEEECS-TTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             CC-CCCCCCC-CCCCEEEEECCCCEEEEEECCCCCC
T ss_conf             44-2112368-8787589973898199963455730

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-38  Score=266.67  Aligned_cols=295  Identities=19%  Similarity=0.266  Sum_probs=246.4

Q ss_pred             CCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEE
Q ss_conf             11244213588895698971898759999828674799956898611342013431342342125433149986669999
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~  379 (1068)
                      ....++|.||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +..|...|.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~  104 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA  104 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred             EEEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEE-------------------EECCCCCEEEEE
T ss_conf             065279888789888999989999-999997899555631021025799-------------------724653377567


Q ss_pred             ECCCCCEEEEEECCCEEEEEECCCCCCC-CCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             9999998899958968999983689764-210897352355879997189991799999289939999789996246952
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       380 ~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      |+|++.++++++.|+.+.+|+....... .....+.+|...........+.   .+.....|.....+............
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             EECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             601211443101332010133222212221110013542110111111111---11111244543200123221111123


Q ss_pred             CCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf             68976799863101893199999858919999588998168724899718999981499889999608889404999947
Q 001490          459 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       459 ~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~  538 (1068)
                      .+...+....+.+  ...++++++.|+.|++||+........+..+...|.+++|+|+++++++++.    ++.+++|+.
T Consensus       182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~  255 (340)
T d1tbga_         182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL  255 (340)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             CCCEEEEEECCCC--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEC----CCEEEEEEE
T ss_conf             3101576300124--4212687605736999999999488999578898589999799899999969----996999752


Q ss_pred             CCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf             88705568742334568737999913999899997899099999589807999908999899752999159999999988
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      ........+.... +...+.++.|+|+++++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|++.+|++++.
T Consensus       256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred             CCCCCCCCCCCCC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCC--CCEEEEEEECCCCEEEEECC
T ss_conf             1221111111224-45745899998999999999797989999999993989984899--97899999089999999906


Q ss_pred             CCEEEEEE
Q ss_conf             99199998
Q 001490          619 ENRIKILE  626 (1068)
Q Consensus       619 dg~i~iwd  626 (1068)
                      ||.|++||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEEC
T ss_conf             99799859

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-38  Score=262.93  Aligned_cols=183  Identities=19%  Similarity=0.209  Sum_probs=93.4

Q ss_pred             ECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             24999999994-99199999467535777558999869999807999899999789809999948850356501455586
Q 001490          787 SKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  865 (1068)
Q Consensus       787 s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V  865 (1068)
                      .+++++++.+. ++.+++||+.+++.+.....+...+.++.+++ ++.++++++.|+.|++|+..++..+..+.+|...|
T Consensus       168 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v  246 (355)
T d1nexb2         168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALV  246 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC
T ss_pred             CCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCC-CCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             02563344211442044430131100011000123321111112-10021012456368763012211111111111111


Q ss_pred             EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEECCCCEE
Q ss_conf             99999289999999938983999987998245333331479865689982599992089999999579099998787403
Q 001490          866 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC  945 (1068)
Q Consensus       866 ~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~iwd~~~~~~  945 (1068)
                      .+++++  +++|++++.||.|++||+.+.....    ..   |..  .......+++++.+++++.|+.|++||++++++
T Consensus       247 ~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~  315 (355)
T d1nexb2         247 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKF----SY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKL  315 (355)
T ss_dssp             CEEEEC--SSEEEEECTTSEEEEEETTTCCEEE----EE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCB
T ss_pred             CCCCCC--CCEEEEEECCCCCCCCCCCCCCEEC----CC---CCC--CCEEEEEECCCCCEEEEEECCEEEEEECCCCCE
T ss_conf             111232--1003332011111111111111000----12---468--822999984999899998099799999999979


Q ss_pred             EEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf             3230137776889999952899999998999299999
Q 001490          946 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       946 ~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd  982 (1068)
                      +.....+|..+|.+++|+++ .++++++.||.+++|.
T Consensus       316 ~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         316 VHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             CCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEE
T ss_conf             88884589998999998399-1999998989099999

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-37  Score=260.35  Aligned_cols=127  Identities=16%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             EEECCCCCCCC-EEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf             44213588895-69897189875999982867479995689861134201343134234212543314998666999999
Q 001490          303 AQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  381 (1068)
Q Consensus       303 ~~~l~~h~~~V-~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s  381 (1068)
                      ..+|+||.+.| +|++|  +|+ +|++|+.||+|+|||+.+++.+.+                   +.+|.+.|.+++|+
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~s   62 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYA   62 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEE
T ss_pred             CEEECCCCCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEEC
T ss_conf             58889837886999998--899-999991899099998999939999-------------------97899988999986


Q ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEE
Q ss_conf             99998899958968999983689764210897352355879997189991799999289939999789996246
Q 001490          382 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  455 (1068)
Q Consensus       382 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  455 (1068)
                      |+ .+|++++.|++|++|+.......... ....+........+.+++.  .+++++.|+.|++||+.++....
T Consensus        63 ~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~  132 (355)
T d1nexb2          63 HG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVP  132 (355)
T ss_dssp             TT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----
T ss_pred             CC-CEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC--EEEEECCCCCEEEEECCCCCEEC
T ss_conf             99-99999964524432111111111111-0011111111111112322--04554388868999856773001

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.3e-39  Score=270.70  Aligned_cols=265  Identities=11%  Similarity=0.048  Sum_probs=206.4

Q ss_pred             CCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf             88895698971898759999828674799956898611342013431342342125433149986669999999999889
Q 001490          309 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  388 (1068)
Q Consensus       309 h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la  388 (1068)
                      +.++|+|++|||||+ ++|+|+.|+.|+|||..+++.....                 .+.+|.+.|.+++|+|++++|+
T Consensus         6 ~~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~   67 (371)
T d1k8kc_           6 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIV   67 (371)
T ss_dssp             CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEE-----------------EECCCCCCEEEEEECCCCCEEE
T ss_conf             998838999989999-9999948898999988899789999-----------------9558899888999979999999


Q ss_pred             EEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE----EEECCCCCCE
Q ss_conf             995896899998368976421089735235587999718999179999928993999978999624----6952689767
Q 001490          389 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPV  464 (1068)
Q Consensus       389 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v  464 (1068)
                      +++.|++|++||+.++... ....+.+|...|.+++|+|+++  .+++++.|+.+++|++......    .....|...|
T Consensus        68 s~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v  144 (371)
T d1k8kc_          68 TCGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV  144 (371)
T ss_dssp             EEETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred             EEECCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             9979993999862033211-0012232211000111111121--100000257630254420334331110010111222


Q ss_pred             EEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEE
Q ss_conf             99863101893199999858919999588998168724899718999981499889999608889404999947887055
Q 001490          465 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  544 (1068)
Q Consensus       465 ~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~  544 (1068)
                      .+++|+|  ++.+|++++.|+.+++|+.............          +.                  ......+...
T Consensus       145 ~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~------------------~~~~~~~~~~  194 (371)
T d1k8kc_         145 LSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PW------------------GSKMPFGELM  194 (371)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TT------------------BSCCCTTCEE
T ss_pred             CCCCCCC--CCCCEECCCCCCEEEEEEECCCCCCCCCCCC----------CC------------------CCCCCCEEEE
T ss_conf             1111111--1111000134767999840157643100122----------11------------------1111110112


Q ss_pred             EEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEE
Q ss_conf             68742334568737999913999899997899099999589807999908999899752999159999999988991999
Q 001490          545 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  624 (1068)
Q Consensus       545 ~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  624 (1068)
                      ....+|.   ..+.+++|+|+++++++++.|+.|++||...+..+..+..+.  .++.+++|+|++.++++| .|+.+.+
T Consensus       195 ~~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g-~d~~~~~  268 (371)
T d1k8kc_         195 FESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVL  268 (371)
T ss_dssp             EECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred             EECCCCC---CCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCC--CCCEEEEECCCCCEEEEE-CCCCEEE
T ss_conf             4404766---747898751233210000147860588641012100000146--652036546999799998-1992678


Q ss_pred             EECCCC
Q ss_conf             987999
Q 001490          625 LETPES  630 (1068)
Q Consensus       625 wd~~~~  630 (1068)
                      |.....
T Consensus       269 ~~~~~~  274 (371)
T d1k8kc_         269 FTYDSA  274 (371)
T ss_dssp             EEEETT
T ss_pred             EEEECC
T ss_conf             776089

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-36  Score=254.17  Aligned_cols=202  Identities=17%  Similarity=0.228  Sum_probs=103.2

Q ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf             14998666999999999988999589689999836897642108973523558799971899917999992899399997
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      |.||.+.|++++|+|++++||+|+.||+|++||+.+++.+.   .+..|...|.+++|+|+++  ++++++.|+.+.+|+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE---EEECCCCCEEEEEEECCCE--EEEEECCCCEEECCC
T ss_conf             88878988899998999999999789955563102102579---9724653377567601211--443101332010133


Q ss_pred             CCCCC----EEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf             89996----24695268976799863101893199999858919999588998168724899718999981499889999
Q 001490          448 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  523 (1068)
Q Consensus       448 ~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~  523 (1068)
                      .....    ....+.+|...........   +..+.....+.....+..                               
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------------  171 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDI-------------------------------  171 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEET-------------------------------
T ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCC-------------------------------
T ss_conf             2222122211100135421101111111---111111124454320012-------------------------------


Q ss_pred             EECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCE
Q ss_conf             60888940499994788705568742334568737999913999899997899099999589807999908999899752
Q 001490          524 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  603 (1068)
Q Consensus       524 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  603 (1068)
                                     ...........+.   ..+....+.+....+++++.|+.+++||+++++.+..+..+.  ..|.+
T Consensus       172 ---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~--~~i~~  231 (340)
T d1tbga_         172 ---------------ETGQQTTTFTGHT---GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINA  231 (340)
T ss_dssp             ---------------TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCS--SCEEE
T ss_pred             ---------------CCCCCCCCCCCCC---EEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCC--CCEEE
T ss_conf             ---------------3221111123310---157630012442126876057369999999994889995788--98589


Q ss_pred             EEEECCCCEEEEEECCCEEEEEECC
Q ss_conf             9991599999999889919999879
Q 001490          604 ICFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       604 v~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      ++|+|++.++++++.|+.+++|+..
T Consensus       232 v~~~p~~~~l~s~s~d~~i~~~~~~  256 (340)
T d1tbga_         232 ICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEECCCCCEEEEEECCCEEEEEEEC
T ss_conf             9997998999999699969997521

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.1e-38  Score=263.22  Aligned_cols=296  Identities=13%  Similarity=0.141  Sum_probs=200.4

Q ss_pred             CCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEE
Q ss_conf             11244213588895698971898759999828674799956898611342013431342342125433149986669999
Q 001490          300 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  379 (1068)
Q Consensus       300 ~~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~  379 (1068)
                      ..+.+++.||++.|++++|+|||+ +|++|+.||+|++||+.+++.+..                  ...+|...|.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~   62 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIK   62 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEE------------------ECCCCCCCEEEEE
T ss_conf             861368488887828999979999-999990899299999999968899------------------8378877489988


Q ss_pred             ECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf             99999988999589689999836897642108973523558799971899917999992899399997899962469526
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  459 (1068)
Q Consensus       380 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  459 (1068)
                      |+|+++++ +++.|+.+++|+...............+...+.+++|+++++  ++++++ ++.+.+|+..  +.....  
T Consensus        63 ~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~--~~~~~~--  134 (299)
T d1nr0a2          63 TTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG--KLTEVP--  134 (299)
T ss_dssp             ECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT--EEEEEE--
T ss_pred             EECCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCC-CCCCCCCCCC--CCCCCC--
T ss_conf             40331121-023102688731677620111000111134432100112211--111222-2222111111--111101--


Q ss_pred             CCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE-EECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf             8976799863101893199999858919999588998168-724899718999981499889999608889404999947
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~  538 (1068)
                      ....+.++++++  ++.++++++.|+.|++||+....... ....+...+.+++|+|+++++++++.    ++.+++||.
T Consensus       135 ~~~~~~~~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~  208 (299)
T d1nr0a2         135 ISYNSSCVALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSV  208 (299)
T ss_dssp             CSSCEEEEEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEG
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC
T ss_conf             111233221111--11111111111111111111111111111111111111111111111111111----111111111


Q ss_pred             CCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf             88705568742334568737999913999899997899099999589807999908999899752999159999999988
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      .++...........+...|.+++|+|+++++++++.||.|++||+.++..........+........+++++.+|++++.
T Consensus       209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEECCCCEEEEEEC
T ss_conf             11111111111111111111112466645138882899799998999973148983489889689999779899999928


Q ss_pred             CCEEEEEECC
Q ss_conf             9919999879
Q 001490          619 ENRIKILETP  628 (1068)
Q Consensus       619 dg~i~iwd~~  628 (1068)
                      |+.|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEECC
T ss_conf             9979999444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=246.63  Aligned_cols=288  Identities=16%  Similarity=0.246  Sum_probs=148.0

Q ss_pred             CEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             12442135888956989718987599998286747999568986113420134313423421254331499866699999
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~  380 (1068)
                      +..++|+||++.|.+ +++++|+ +||+|+.||+|+|||+.+++++..                   +.+|...|.+++|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~   65 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQM   65 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEE
T ss_pred             CCCEEECCCCCCEEE-EEEECCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEE
T ss_conf             758898886875099-9997899-999991899099998999979999-------------------9488999899994


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf             99999889995896899998368976421089735235587999718999179999928993999978999624695268
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  460 (1068)
Q Consensus       381 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  460 (1068)
                      +|+  +|++++.|+.+++|+........   ....+...+......+  .  .+..+..|+.+.+|+..+++....+...
T Consensus        66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~  136 (342)
T d2ovrb2          66 RDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGH  136 (342)
T ss_dssp             ETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             CCC--CCCCCEECCCCCCCCCCCCCCEE---CCCCCCEEEEEEECCC--C--CCCCCCCCEEEEEEECCCCCCEEEEECC
T ss_conf             798--63210000011111111000000---0123330476520246--5--2212344403787403556300111001


Q ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf             97679986310189319999985891999958899816872489971899998149988999960888940499994788
Q 001490          461 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  540 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~  540 (1068)
                      .........    ....++.++.|+.+++|+.........+..+...+..  +.+++.++++++.    ++.|++||+..
T Consensus       137 ~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~----dg~i~~~d~~~  206 (342)
T d2ovrb2         137 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSL----DTSIRVWDVET  206 (342)
T ss_dssp             SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEET----TSCEEEEETTT
T ss_pred             CCCCEEECC----CCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCC--CCCCCCEEEEEEC----CCEEEEEECCC
T ss_conf             111000001----3330243358986999525234366787275444210--0689999999958----99399952556


Q ss_pred             CEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCC
Q ss_conf             70556874233456873799991399989999789909999958980799990899989975299915999999998899
Q 001490          541 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  620 (1068)
Q Consensus       541 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  620 (1068)
                      ++.+..+.+|.   ..+.++.++  ++++++++.|+.|++|+....+....+..+.. ......++.+++.++++++.||
T Consensus       207 ~~~~~~~~~~~---~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg  280 (342)
T d2ovrb2         207 GNCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDG  280 (342)
T ss_dssp             CCEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTS
T ss_pred             CEEEEEECCCC---CCEEEEECC--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCE-EEECEEECCCCCCEEEEECCCC
T ss_conf             53656741665---320577068--99999974898899986554422111221000-1101000013798449990899


Q ss_pred             EEEEEECCCCCEEE
Q ss_conf             19999879996455
Q 001490          621 RIKILETPESNSVD  634 (1068)
Q Consensus       621 ~i~iwd~~~~~~~~  634 (1068)
                      .|++||+.+++.+.
T Consensus       281 ~i~iwd~~tg~~i~  294 (342)
T d2ovrb2         281 TVKLWDLKTGEFIR  294 (342)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             EEEEEECCCCCEEE
T ss_conf             89999999997989

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.6e-37  Score=255.69  Aligned_cols=200  Identities=18%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             CCCCEEEEEEECCCCEEEEEEC---CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCC
Q ss_conf             9998309998249999999949---91999994675357775589998699998079998-9999978980999994885
Q 001490          777 SQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNARSS  852 (1068)
Q Consensus       777 ~~~~v~~i~~s~dg~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~i~iwd~~~~  852 (1068)
                      |...|.+++|+|++++++++++   ..+++|++.+++...++.+|...|++++|+| ++. ++++|+.||.|++||+.++
T Consensus       101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTB
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEECCCCCCCCCCCCCCCCC
T ss_conf             35754332333111000111122111111111111111111111111111111121-11012000112211111111111


Q ss_pred             EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEEEEC
Q ss_conf             03565014555869999928999999993898399998799824533333147986568998259999208999999957
Q 001490          853 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  932 (1068)
Q Consensus       853 ~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d  932 (1068)
                      +....+.+|...|.++.|+|+++++++++.|+.|++|+...+                                      
T Consensus       180 ~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~--------------------------------------  221 (311)
T d1nr0a1         180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--------------------------------------  221 (311)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------------------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------
T ss_conf             111111111111111234764221211111111100012446--------------------------------------


Q ss_pred             CEEEEEECCCCEEEEE------ECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             9099998787403323------0137776889999952899999998999299999589908989623322389876676
Q 001490          933 THLAIYEAEELTCLKQ------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1006 (1068)
Q Consensus       933 ~~i~iwd~~~~~~~~~------~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1068)
                                 .....      ...+|...|++++|+|++++|++++.||.|++||+.+++++..+..+..       ..
T Consensus       222 -----------~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~-------~~  283 (311)
T d1nr0a1         222 -----------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-------IE  283 (311)
T ss_dssp             -----------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-------GG
T ss_pred             -----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC-------CC
T ss_conf             -----------411222111111100246532102478899999993799699999999969999979998-------63


Q ss_pred             CCCEEEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf             341699988999988999928991999907
Q 001490         1007 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus      1007 ~~~~~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
                      ....++.|+   ++.+++++.||.|++||.
T Consensus       284 ~~~~~~~~~---~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         284 DQQLGIIWT---KQALVSISANGFINFVNP  310 (311)
T ss_dssp             GCEEEEEEC---SSCEEEEETTCCEEEEET
T ss_pred             CEEEEEEEC---CCEEEEEECCCEEEEEEC
T ss_conf             329999951---999999989997999958

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=244.14  Aligned_cols=317  Identities=20%  Similarity=0.295  Sum_probs=155.3

Q ss_pred             EECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             97352355879997189991799999289939999789996246952689767998631018931999998589199995
Q 001490          412 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  491 (1068)
Q Consensus       412 ~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd  491 (1068)
                      .++||.+.|.+ +++++|+  +|++|+.|++|++||+.+++++.++.+|...|.+++|++    .++++++.|+.+++|+
T Consensus        11 ~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVWN   83 (342)
T ss_dssp             EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEEE
T ss_pred             EECCCCCCEEE-EEEECCC--EEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC----CCCCCCEECCCCCCCC
T ss_conf             98886875099-9997899--999991899099998999979999948899989999479----8632100000111111


Q ss_pred             CCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEE
Q ss_conf             88998168724899718999981499889999608889404999947887055687423345687379999139998999
Q 001490          492 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  571 (1068)
Q Consensus       492 ~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~  571 (1068)
                      ................+......  ...+..+..    +..+.+|+..++.....+....   .  ...........++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---A--AVRCVQYDGRRVVS  152 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---S--CEEEEEECSSCEEE
T ss_pred             CCCCCCEECCCCCCEEEEEEECC--CCCCCCCCC----CEEEEEEECCCCCCEEEEECCC---C--CCEEECCCCCEEEE
T ss_conf             11000000012333047652024--652212344----4037874035563001110011---1--10000013330243


Q ss_pred             EECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCC
Q ss_conf             97899099999589807999908999899752999159999999988991999987999645521334665035477378
Q 001490          572 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  651 (1068)
Q Consensus       572 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  651 (1068)
                      ++.|+.+++|+......+..+..+.    .....+.+++..+++++.||.|++|+....+.+.....             
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~-------------  215 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-------------  215 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC-------------
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCC----CCCCCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECC-------------
T ss_conf             3589869995252343667872754----44210068999999995899399952556536567416-------------


Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECC
Q ss_conf             64000012467056448998775322010256520010123227866510003773344328999995588659994127
Q 001490          652 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  731 (1068)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  731 (1068)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (342)
T d2ovrb2         216 --------------------------------------------------------------------------------  215 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCE
Q ss_conf             607987646776577754100158942378999932330578999999830999824999999994-9919999946753
Q 001490          732 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK  810 (1068)
Q Consensus       732 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~  810 (1068)
                                                                   |...+.+++++  ++++++++ |+.|++|+....+
T Consensus       216 ---------------------------------------------~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~  248 (342)
T d2ovrb2         216 ---------------------------------------------HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ  248 (342)
T ss_dssp             ---------------------------------------------CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC
T ss_pred             ---------------------------------------------CCCCEEEEECC--CCEEEEECCCCEEEEEECCCCC
T ss_conf             ---------------------------------------------65320577068--9999997489889998655442


Q ss_pred             EEEEECC---CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC-----CCCCCEEEEEECCCCCEEEEEEC
Q ss_conf             5777558---999869999807999899999789809999948850356501-----45558699999289999999938
Q 001490          811 TILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVSSGG  882 (1068)
Q Consensus       811 ~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~-----~h~~~V~~i~~spdg~~l~s~s~  882 (1068)
                      ....+..   |...+.++.++   +.++++|+.||.|++||+.+++.+..+.     +|.+.|++++|+|++.++++++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~  325 (342)
T d2ovrb2         249 CLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR  325 (342)
T ss_dssp             EEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS
T ss_pred             CCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEC
T ss_conf             211122100011010000137---98449990899899999999979899862347898897899998799989999968


Q ss_pred             CCC----EEEEECCC
Q ss_conf             983----99998799
Q 001490          883 DAQ----IFVWDVDG  893 (1068)
Q Consensus       883 dg~----i~iwd~~~  893 (1068)
                      ||+    |++||++.
T Consensus       326 dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         326 NGTEETKLLVLDFDV  340 (342)
T ss_dssp             SSSSCCEEEEEECCC
T ss_pred             CCCCEEEEEEEECCC
T ss_conf             999704899993899

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-36  Score=250.47  Aligned_cols=115  Identities=17%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf             66699999999998899958968999983689764210897352355879997189991799999289939999789996
Q 001490          373 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  452 (1068)
Q Consensus       373 ~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  452 (1068)
                      ++|+|++|+|||++||+|+.|+.|++||..+++. .....+.+|.++|.+++|+|+++  +|++++.|+.|++||+.++.
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-EEEEEECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEEECCCC
T ss_conf             8838999989999999994889899998889978-99999558899888999979999--99999799939998620332


Q ss_pred             EE--EEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             24--69526897679986310189319999985891999958
Q 001490          453 RT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY  492 (1068)
Q Consensus       453 ~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  492 (1068)
                      ..  ..+.+|...|.+++|+|  +++.+++++.|+.+++|++
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~  124 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYF  124 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--CCCCCEEECCCCCCEEEEE
T ss_conf             110012232211000111111--1211000002576302544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-34  Score=242.23  Aligned_cols=196  Identities=13%  Similarity=0.131  Sum_probs=95.9

Q ss_pred             CCCCEEEEEEECCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf             99983099982499999999499199999467535777558999869999807999899999789809999948850356
Q 001490          777 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  856 (1068)
Q Consensus       777 ~~~~v~~i~~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~  856 (1068)
                      +...+.++++++++++++++.++.+.+|+....  ....  ....+++++|+| +++++++|+.||.|++||+.+++...
T Consensus        98 ~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~  172 (299)
T d1nr0a2          98 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL--TEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE  172 (299)
T ss_dssp             CSSCEEEEEECTTSSCEEEEESSEEEEEETTEE--EEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC--CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             134432100112211111222222211111111--1101--111233221111-11111111111111111111111111


Q ss_pred             -EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEE-EECCE
Q ss_conf             -5014555869999928999999993898399998799824533333147986568998259999208999999-95790
Q 001490          857 -KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETH  934 (1068)
Q Consensus       857 -~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~  934 (1068)
                       ....|...|++++|+|++++|++++.|+.|++|++.++....  ......+|..   .|.+++|+|++.+|++ +.|+.
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~h~~---~v~~l~~s~~~~~l~sgs~dg~  247 (299)
T d1nr0a2         173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNSWTFHTA---KVACVSWSPDNVRLATGSLDNS  247 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCCCCCCSS---CEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC---CCCCCCCCCCCCCEEEECCCCE
T ss_conf             1111111111111111111111111111111111111111111--1111111111---1111124666451388828997


Q ss_pred             EEEEECCCCEEEEE-ECCCC-CCCEEEEEEECCCCEEEEEECCCCEEEEEC
Q ss_conf             99998787403323-01377-768899999528999999989992999995
Q 001490          935 LAIYEAEELTCLKQ-WFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEA  983 (1068)
Q Consensus       935 i~iwd~~~~~~~~~-~~~~h-~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~  983 (1068)
                      |++||+.++..... ....| ...+..+ +++++++|++++.|+.|++||+
T Consensus       248 i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         248 VIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             EEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEEC
T ss_pred             EEEEECCCCCCCEEEEECCCCCCCEEEE-EECCCCEEEEEECCCEEEEEEC
T ss_conf             9999899997314898348988968999-9779899999928997999944

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=240.87  Aligned_cols=290  Identities=12%  Similarity=0.173  Sum_probs=217.9

Q ss_pred             CCEEEEECCCCCEEEEEECC-CCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCC-CCCEEEEEECC--CCCEE
Q ss_conf             95698971898759999828-6747999568986113420134313423421254331499-86669999999--99988
Q 001490          312 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL  387 (1068)
Q Consensus       312 ~V~~i~~spdg~~lla~g~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~sp--dg~~l  387 (1068)
                      .+++++|+|+|+.+ ++++. ...|+.|+.........                 ..+.+| ...|++++|+|  ++.+|
T Consensus        19 ~~t~l~~~~~~~~l-a~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          19 FTTHLSYDPTTNAI-AYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CCCCCEEETTTTEE-EEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CEEEEEECCCCCEE-EEEECCCEEEEEEECCCCCCCCE-----------------EEEECCCCCCEEEEEEEECCCCCEE
T ss_conf             84799998997999-99969987999976888876502-----------------8990789998899998117999799


Q ss_pred             EEEECCCEEEEEECCCCCCCCCE-----EEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCC
Q ss_conf             99958968999983689764210-----8973523558799971899917999992899399997899962469526897
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  462 (1068)
Q Consensus       388 as~~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~  462 (1068)
                      |+|+.||+|++||+..+......     ..+..|.++|.+++|+++++.+..++.+.++.+.+|+..+++.+..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf             99948997798540588621565100254113656737799989998822010012440478885023311001200123


Q ss_pred             CEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEC---CCCCCEEEEEECCC-CCEEEEEEECCCCCEEEEEEEC
Q ss_conf             6799863101893199999858919999588998168724---89971899998149-9889999608889404999947
Q 001490          463 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       463 ~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~i~~s~d-~~~l~~~~~~~~~~~~i~iwd~  538 (1068)
                      .|.+++|++.. ...+++++.|+.+++|+....+......   .+...+.+++|+|+ +.++++++.    ++.|++||.
T Consensus       161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~  235 (325)
T d1pgua1         161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG  235 (325)
T ss_dssp             CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred             CCCCCCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCC----CCCEEEEEE
T ss_conf             43211112343-2068886211122111122110000000015777752776303453100001123----321013430


Q ss_pred             CCCEEEEEEECCCCCCCCEEEEEEE---CCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECC-CCEEE
Q ss_conf             8870556874233456873799991---3999899997899099999589807999908999899752999159-99999
Q 001490          539 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA  614 (1068)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~  614 (1068)
                      .+++.+..+.+|.   ..+..+.|+   ++++++++++.|+.|++||+++++++..+..+.+...+..+++.+. +.+++
T Consensus       236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             CCCCCCCCCCCCC---CCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEE
T ss_conf             0122211111111---1111100000036899999995899399999999978899995487406769999988999999


Q ss_pred             EEECCCEEEEEEC
Q ss_conf             9988991999987
Q 001490          615 VIANENRIKILET  627 (1068)
Q Consensus       615 ~~~~dg~i~iwd~  627 (1068)
                      +++.||.|++||+
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
T ss_conf             9979999999979

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-33  Score=233.34  Aligned_cols=286  Identities=13%  Similarity=0.132  Sum_probs=187.6

Q ss_pred             CEEEEEEECCCCEEEEEECCC-CEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCEEEECCCCCCC-CCCEEEEEEEC-
Q ss_conf             289999955886599941276-079876467765777541001589423789999323305789999-99830999824-
Q 001490          712 KISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK-  788 (1068)
Q Consensus       712 ~i~~l~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~s~-  788 (1068)
                      ...++.|+|+++.++.++.+. .++.|+......                      .....+.  +| ...+++++|+| 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~----------------------~~~~~~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV----------------------PPVVQFT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS----------------------CSEEEEC--TTTTSCEEEEEECSS
T ss_pred             CEEEEEECCCCCEEEEEECCCEEEEEEECCCCCC----------------------CCEEEEE--CCCCCCEEEEEEEEC
T ss_conf             8479999899799999969987999976888876----------------------5028990--789998899998117


Q ss_pred             -CCCEEEEEE-CCEEEEEECCCCEEE--------EEECCCCCCEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEE
Q ss_conf             -999999994-991999994675357--------7755899986999980799989999978--9809999948850356
Q 001490          789 -NDAYLFSAS-GGVISLYIVMTFKTI--------LTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVIS  856 (1068)
Q Consensus       789 -dg~~l~~~~-dg~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~i~iwd~~~~~~~~  856 (1068)
                       +++++++++ ||+|++||+...+..        ..+..+.+.|.+++|++ +++++++++.  ++.+.+|+..+++.+.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC-CCCCCCEEECCCCCEEEEEEECCCCCCE
T ss_conf             999799999489977985405886215651002541136567377999899-9882201001244047888502331100


Q ss_pred             EECCCCCCEEEEEECCCCCE-EEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEC-CCEEEE-EECC
Q ss_conf             50145558699999289999-99993898399998799824533333147986568998259999208-999999-9579
Q 001490          857 KLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHET  933 (1068)
Q Consensus       857 ~~~~h~~~V~~i~~spdg~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~  933 (1068)
                      .+.+|...|.+++|+|++.+ +++++.|+.+++|+....+...  ......++..   .|.+++|+|+ +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~~---~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQGS---FVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTTC---CEEEEEECSTTCCEEEEEETTC
T ss_pred             EEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCE--ECCCCCCCCC---CCEEEEECCCCCEECCCCCCCC
T ss_conf             1200123432111123432068886211122111122110000--0000157777---5277630345310000112332


Q ss_pred             EEEEEECCCCEEEEEECCCCCCCEEEEEEE---CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCE
Q ss_conf             099998787403323013777688999995---28999999989992999995899089896233223898766763416
Q 001490          934 HLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1010 (1068)
Q Consensus       934 ~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs---~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1068)
                      .|++||..+++.+.. +.+|..++..+.|+   +||++|++++.|+.|++||+.+++++..+..+..      ......+
T Consensus       229 ~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~  301 (325)
T d1pgua1         229 KISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ------QLGNQQV  301 (325)
T ss_dssp             CEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT------CGGGCEE
T ss_pred             CEEEEEECCCCCCCC-CCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCC------CCCCEEE
T ss_conf             101343001222111-111111111100000036899999995899399999999978899995487------4067699


Q ss_pred             EEEECCCCCCEEEEEECCCCEEEEEC
Q ss_conf             99988999988999928991999907
Q 001490         1011 AIAAHPLKPTQFAVGLTNGEVYVIEP 1036 (1068)
Q Consensus      1011 ~~~~~p~~~~~l~~~~~dg~i~~w~~ 1036 (1068)
                      ++.+.+  ...+++++.||.|++|++
T Consensus       302 ~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEECC--CCEEEEEECCCEEEEEEC
T ss_conf             999889--999999979999999979

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.6e-31  Score=220.95  Aligned_cols=213  Identities=10%  Similarity=-0.039  Sum_probs=154.0

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf             59999828674799956898611342013431342342125433149986669999999999889995896899998368
Q 001490          324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  403 (1068)
Q Consensus       324 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~  403 (1068)
                      .++++.+.||+|.|||..+++++..                   +..+ ..+..++|||||+++++++.|+.+.+||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             8999976999799998999839999-------------------7379-9713799889999999982899978998108


Q ss_pred             CCCCC--CEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf             97642--1089735235587999718999179999928993999978999624695268976799863101893199999
Q 001490          404 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  481 (1068)
Q Consensus       404 ~~~~~--~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~  481 (1068)
                      ++...  ......+|.+.+.+.+|+|||++ +++++..++.+++||..+++.+..+..+...+....+.+.         
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------  162 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------  162 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred             CCCEEEEEEECCCCCCCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCC---------
T ss_conf             981288998448898776984321888888-9998178982799907655422540247764352201688---------


Q ss_pred             ECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf             85891999958899816872489971899998149988999960888940499994788705568742334568737999
Q 001490          482 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  561 (1068)
Q Consensus       482 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~  561 (1068)
                                              .....+.+++++..++....   .++.+.+|+..+.+.........  ...+..+.
T Consensus       163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~  213 (432)
T d1qksa2         163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG  213 (432)
T ss_dssp             ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred             ------------------------CCEEEEEECCCCCEEEEEEC---CCCEEEEEECCCCCCCEEEEECC--CCCCCCCE
T ss_conf             ------------------------85058998789998999981---68829999843787522799833--67542653


Q ss_pred             EECCCCEEEEEE-CCCEEEEEECCCCEEEEEEECC
Q ss_conf             913999899997-8990999995898079999089
Q 001490          562 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAG  595 (1068)
Q Consensus       562 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~  595 (1068)
                      |+|+++++++++ .++.+.+++..+++....+...
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g  248 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  248 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             ECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCC
T ss_conf             88988799995166636777614452688872148

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=4.5e-30  Score=211.33  Aligned_cols=232  Identities=11%  Similarity=-0.006  Sum_probs=156.2

Q ss_pred             EECCCCCE-EEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCE
Q ss_conf             97189875-99998286747999568986113420134313423421254331499866699999999998899958968
Q 001490          317 DFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  395 (1068)
Q Consensus       317 ~~spdg~~-lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~  395 (1068)
                      .+++|.+. ++++.+.||+|+|||+.+++.+.+                   +..| ..+..++|||||+++++++.|++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~   84 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR   84 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEEECCCC
T ss_conf             216798708999975999799999999959999-------------------9689-98038999899999999958998


Q ss_pred             EEEEECCCCCCCCC--EEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECC
Q ss_conf             99998368976421--0897352355879997189991799999289939999789996246952689767998631018
Q 001490          396 VQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  473 (1068)
Q Consensus       396 i~iwd~~~~~~~~~--~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~  473 (1068)
                      +++||+.+++....  .....+|...+.+++|+|||++ +++++..++.+.+||..++.++..+.++...+....+.+.+
T Consensus        85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             EEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCC
T ss_conf             89997568860489998678887645885002688987-99963589769998577641257862267773643642788


Q ss_pred             CCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEE-EEECCCC
Q ss_conf             931999998589199995889981687248997189999814998899996088894049999478870556-8742334
Q 001490          474 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQL  552 (1068)
Q Consensus       474 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~  552 (1068)
                      . ...                                +.+++++..++....   +.+.+.+++........ ...++. 
T Consensus       164 ~-~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~-  206 (426)
T d1hzua2         164 R-VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGAA-  206 (426)
T ss_dssp             C-EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEECC-
T ss_pred             C-EEE--------------------------------EEECCCCCEEEEECC---CCCEEEEEEECCCCCEEEEEECCC-
T ss_conf             5-038--------------------------------998787878888527---897699999246652045775667-


Q ss_pred             CCCCEEEEEEECCCCEEEEEE-CCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEC
Q ss_conf             568737999913999899997-89909999958980799990899989975299915
Q 001490          553 QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  608 (1068)
Q Consensus       553 ~~~~i~~i~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  608 (1068)
                        ..+..+.|+|++++++++. .+..+.+++..+++..................+..
T Consensus       207 --~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         207 --PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             --SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             --CCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC
T ss_conf             --7537613778886788642011000000025562788750587444342011006

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.7e-30  Score=210.63  Aligned_cols=47  Identities=21%  Similarity=0.324  Sum_probs=17.0

Q ss_pred             CCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf             999869999807999899999789809999948850356501455586
Q 001490          818 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  865 (1068)
Q Consensus       818 ~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V  865 (1068)
                      |...|++++|+| ++++|++|+.|++|++||+.+++++.++.+|.+.|
T Consensus       288 H~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         288 HSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             BSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             CCCCEEEECCCC-CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCC
T ss_conf             358666001389-88806987799989999999997999998868761

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-29  Score=207.59  Aligned_cols=116  Identities=24%  Similarity=0.409  Sum_probs=61.4

Q ss_pred             CCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEE------CCCCCCEEEEEEECCCCCEEEEEECCC---EEEEE
Q ss_conf             99830999824999999994-991999994675357775------589998699998079998999997898---09999
Q 001490          778 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI------MPPSPTATSLAFNPHDNNVIAIGMDDS---TILIY  847 (1068)
Q Consensus       778 ~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~------~~~~~~i~~l~~s~~d~~~lasg~~dg---~i~iw  847 (1068)
                      ...+.+++|+|++ ++++++ |+.|++||+.+++.+..+      .+|...|++++|+| ++++|++|+.|+   .|++|
T Consensus       184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lw  261 (393)
T d1sq9a_         184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY  261 (393)
T ss_dssp             CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC-CCCEEEEECCCCCCCEEEEC
T ss_conf             9867899978999-899993898299986023321100001111124256387700466-53201124289884210010


Q ss_pred             ECCCCEEEEEE-------------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             94885035650-------------1455586999992899999999389839999879982
Q 001490          848 NARSSEVISKL-------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  895 (1068)
Q Consensus       848 d~~~~~~~~~~-------------~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~  895 (1068)
                      |+.+++++..+             .+|.+.|++++|+||+++|++++.|++|++||+.+++
T Consensus       262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCCC
T ss_conf             3532134443115666643102320235866600138988806987799989999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-29  Score=204.10  Aligned_cols=274  Identities=20%  Similarity=0.289  Sum_probs=173.3

Q ss_pred             EEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             44213588895698971898759999828674799956898611342013431342342125433149986669999999
Q 001490          303 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  382 (1068)
Q Consensus       303 ~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp  382 (1068)
                      ++...+|...|+|++|  ||+ +||+|+.||+|+|||+.+++++..                   +.+|...|.+++|  
T Consensus         8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--   63 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--   63 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred             EECCCCCCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEC--
T ss_conf             8432899998899987--699-999992899399999999919999-------------------9267787763423--


Q ss_pred             CCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCE---EEEECC
Q ss_conf             99988999589689999836897642108973523558799971899917999992899399997899962---469526
Q 001490          383 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG  459 (1068)
Q Consensus       383 dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~  459 (1068)
                      ++++|++|+.|+.|++|++..+....   ....+...  ...+.+...  .++++..++.+.+|+......   ...+..
T Consensus        64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCC--CCCCCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             63002100111011000002464100---11111100--001111110--000013566306861344544421210001


Q ss_pred             CCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECC
Q ss_conf             89767998631018931999998589199995889981687248997189999814998899996088894049999478
Q 001490          460 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  539 (1068)
Q Consensus       460 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~  539 (1068)
                      |...+....+..    ..+++++.|+.+++|+..+.+....+..+...+..+.++  +..+++++.    ++.|++||+.
T Consensus       137 ~~~~v~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~  206 (293)
T d1p22a2         137 HRAAVNVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE  206 (293)
T ss_dssp             CSSCEEEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred             CCCCCCCCEECC----CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECC----CCEEEEEECC
T ss_conf             135431100000----220110699860410078883889971554453221689--875887658----9989998665


Q ss_pred             CCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC---------CEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf             8705568742334568737999913999899997899099999589---------8079999089998997529991599
Q 001490          540 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       540 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      +...+..+.++.   ..+..  +.+++.++++++.||.|++||+..         ...+..+..|.  ..|.+++|+  +
T Consensus       207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~  277 (293)
T d1p22a2         207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--E  277 (293)
T ss_dssp             TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--S
T ss_pred             CCEEEEEECCCC---EEEEE--CCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCC--CCEEEEEEC--C
T ss_conf             561466521431---00000--14541079998679979999888886444567754557845889--988999971--9


Q ss_pred             CEEEEEECCCEEEEEE
Q ss_conf             9999998899199998
Q 001490          611 TLLAVIANENRIKILE  626 (1068)
Q Consensus       611 ~~l~~~~~dg~i~iwd  626 (1068)
                      .+|++++.||+|++||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEECCCEEEEEC
T ss_conf             9999992299899959

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-31  Score=217.04  Aligned_cols=123  Identities=12%  Similarity=0.003  Sum_probs=62.1

Q ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf             14998666999999999988999589689999836897642108973523558799971899917999992899399997
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      ..+|++.|++++|+|++++||+|+.|++|++||+.++..........+|..+|.+++|+|++.. ++++|+.|+.|++|+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCC-EEEECCCCCCEEEEE
T ss_conf             8899897888999589999999979992999975699863689885589998899999589997-899812653114542


Q ss_pred             CCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             899962469526897679986310189319999985891999958
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY  492 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~  492 (1068)
                      +..+........+........+... +...+++++.++.+++||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~  129 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEC
T ss_conf             0443200000111111111111111-1111111012221110202

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-30  Score=211.00  Aligned_cols=190  Identities=11%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             CEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             12442135888956989718987599998286747999568986113420134313423421254331499866699999
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~  380 (1068)
                      +.+++|+||.++|++++|+|     |++|+.||+|++||+.++                        ..+|...|.++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~   54 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN   54 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred             CEEEEECCCCCCEEEEEECC-----EEEEECCCEEEEEECCCC------------------------CCCCCCCEEEEEE
T ss_conf             03499988798649999895-----789848991999989998------------------------8887787899996


Q ss_pred             CCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf             99999889995896899998368976421089735235587999718999179999928993999978999624695268
Q 001490          381 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  460 (1068)
Q Consensus       381 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h  460 (1068)
                      ++++ .+++++.|+++++|++...+          ....+.++++++++.  .+++ +.++.+.+|+..++..+..+..+
T Consensus        55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  120 (287)
T d1pgua2          55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN  120 (287)
T ss_dssp             CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCC-EEEEEEECCCCCCCCCCCCC----------CCCCEEEEEECCCCC--EEEE-EECCCCEEEECCCEEEEEECCCC
T ss_conf             5997-28988610122211111111----------122101466416785--6999-60332100001100354310122


Q ss_pred             CCCEEEEEEEECCCCCEEEEEECCC-CEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf             9767998631018931999998589-19999588998168724-899718999981499889999608889404999947
Q 001490          461 GAPVYSLCPHAKENIHFIFSISVDG-KIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  538 (1068)
Q Consensus       461 ~~~v~~i~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~-~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~  538 (1068)
                       ..+.++  ++  ++..+++++.++ .+++|++.......... .+...+.+++|+|++.++++++.    ++.|++||.
T Consensus       121 -~~~~~~--~~--~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~  191 (287)
T d1pgua2         121 -SPGSAV--SL--SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL  191 (287)
T ss_dssp             -SCEEEE--EE--CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             -CEEEEE--EC--CCCCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCC----CCCCCCEEE
T ss_conf             -203565--21--475111000221000210001221000121024785369995167652110111----111000000


Q ss_pred             CCCE
Q ss_conf             8870
Q 001490          539 SEGA  542 (1068)
Q Consensus       539 ~~~~  542 (1068)
                      .++.
T Consensus       192 ~~~~  195 (287)
T d1pgua2         192 QSRE  195 (287)
T ss_dssp             TTTE
T ss_pred             CCCC
T ss_conf             2332

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-29  Score=206.63  Aligned_cols=60  Identities=35%  Similarity=0.628  Sum_probs=39.4

Q ss_pred             CCCEEEEEECCCEEEEEECCC-CEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf             998999997898099999488-5035650145558699999289999999938983999987
Q 001490          831 DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  891 (1068)
Q Consensus       831 d~~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~  891 (1068)
                      ++.++++|+.|+.|++|++.+ .+.+..+.+|.+.|++++|+|++ .+++++.|++|++|++
T Consensus       226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf             887027664999599988899975899927878985899998999-8999979992999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=100.00  E-value=1.6e-29  Score=207.59  Aligned_cols=59  Identities=14%  Similarity=0.014  Sum_probs=25.3

Q ss_pred             EEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCC
Q ss_conf             99958968999983689764210897352355879997189991799999289939999789996
Q 001490          388 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  452 (1068)
Q Consensus       388 as~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  452 (1068)
                      ++.+.+++|.+||..+++.++   .+..+ ..+..++|||||+  ++++++.|+.+.+||+.+++
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~   94 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKE   94 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSS
T ss_pred             EEECCCCEEEEEECCCCCEEE---EEECC-CCEEEEEECCCCC--EEEEECCCCCEEEEEEECCC
T ss_conf             997699979999899983999---97379-9713799889999--99998289997899810898

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6e-29  Score=203.83  Aligned_cols=119  Identities=8%  Similarity=0.060  Sum_probs=57.4

Q ss_pred             CCCCEEEEEEECCCCEEEEEE--CCEEEEEECCCCEEEEEECCC--CCCEEEEEEECCCCCEEE--EEECCCEEEEEECC
Q ss_conf             999830999824999999994--991999994675357775589--998699998079998999--99789809999948
Q 001490          777 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIA--IGMDDSTILIYNAR  850 (1068)
Q Consensus       777 ~~~~v~~i~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~la--sg~~dg~i~iwd~~  850 (1068)
                      +...+..++++|+++++.++.  +..+.+++..+++........  ........+.......+.  ....|+.+.+|+..
T Consensus       205 ~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~  284 (426)
T d1hzua2         205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  284 (426)
T ss_dssp             CCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred             CCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECC
T ss_conf             67753761377888678864201100000002556278875058744434201100698774577415789659885225


Q ss_pred             C-------CEEEEEECCCCCCEEEEEECCCCCEEEE-------EECCCCEEEEECCCCC
Q ss_conf             8-------5035650145558699999289999999-------9389839999879982
Q 001490          851 S-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWDVDGWG  895 (1068)
Q Consensus       851 ~-------~~~~~~~~~h~~~V~~i~~spdg~~l~s-------~s~dg~i~iwd~~~~~  895 (1068)
                      .       ++....+.+|...+..++|+||+++|++       ++.|++|++||+.+++
T Consensus       285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~  343 (426)
T d1hzua2         285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  343 (426)
T ss_dssp             TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCC
T ss_conf             66520330258689866887636787489986188850679880228879999898787

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-30  Score=209.92  Aligned_cols=295  Identities=9%  Similarity=0.021  Sum_probs=163.6

Q ss_pred             CEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf             12442135888956989718987599998286747999568986113420134313423421254331499866699999
Q 001490          301 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  380 (1068)
Q Consensus       301 ~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~  380 (1068)
                      ++++.+++|++.|++++|||+++ +||+|+.||+|+|||+.++.......                ...+|..+|.+++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f   64 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNF   64 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEE
T ss_pred             CEEECCCCCCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCEEEE----------------EECCCCCCEEEEEE
T ss_conf             75976889989788899958999-99999799929999756998636898----------------85589998899999


Q ss_pred             CCC-CCEEEEEECCCEEEEEECCCCCCCCCEEEECCC-CCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEE-
Q ss_conf             999-998899958968999983689764210897352-35587999718999179999928993999978999624695-
Q 001490          381 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  457 (1068)
Q Consensus       381 spd-g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  457 (1068)
                      +|+ +.+|++|+.|+.|++|++..+....   ....+ ........+.++..  .+++++.++.+++||+.++...... 
T Consensus        65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             ECCCCCEEEECCCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCEEEE
T ss_conf             58999789981265311454204432000---00111111111111111111--11110122211102023444330230


Q ss_pred             ---CCCCC--CEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE---EECCCCCCEEEEEE-CCCCCEEEEEEECCC
Q ss_conf             ---26897--6799863101893199999858919999588998168---72489971899998-149988999960888
Q 001490          458 ---EGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAY-SANGRRLFSCGTSKE  528 (1068)
Q Consensus       458 ---~~h~~--~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~i~~-s~d~~~l~~~~~~~~  528 (1068)
                         ..+..  ......+.+  ++..+++++.|+.|++|++.......   ..........+..+ ..++..+++++.   
T Consensus       140 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---  214 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---  214 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred             CCCCCCCCCCEEEEEEEEC--CCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECC---
T ss_conf             0024300120000010001--68702465179847887605676341112102542210146763699987886548---


Q ss_pred             CCEEEEEEECCCCEEE------EEE------ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCC
Q ss_conf             9404999947887055------687------4233456873799991399989999789909999958980799990899
Q 001490          529 GESFLVEWNESEGAIK------RTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  596 (1068)
Q Consensus       529 ~~~~i~iwd~~~~~~~------~~~------~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  596 (1068)
                       ++.+.+|+.......      ..+      ..+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+....
T Consensus       215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             -CCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf             -9959999805986401112351256555314777623543159966984479998799989999999894988705899


Q ss_pred             CCCCCCEEEEECCCCEEEEEECCCEEEEEE
Q ss_conf             989975299915999999998899199998
Q 001490          597 GLPENPRICFNKNGTLLAVIANENRIKILE  626 (1068)
Q Consensus       597 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  626 (1068)
                         ....++|+++++.+++++.|+.+++|.
T Consensus       294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         294 ---EDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             ---SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             ---CCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf             ---987999994799999999199278830

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-27  Score=194.60  Aligned_cols=233  Identities=18%  Similarity=0.297  Sum_probs=121.6

Q ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEE
Q ss_conf             14998666999999999988999589689999836897642108973523558799971899917999992899399997
Q 001490          368 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  447 (1068)
Q Consensus       368 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd  447 (1068)
                      ..+|...|+|++|  ||++||+|+.||+|++||+.+++.++   .+.+|.+.|.+++|  +++  +|++++.|+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred             CCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEC--CCC--EEECCCCCCCCCCCC
T ss_conf             2899998899987--69999999289939999999991999---99267787763423--630--021001110110000


Q ss_pred             CCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE---EECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             8999624695268976799863101893199999858919999588998168---7248997189999814998899996
Q 001490          448 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG  524 (1068)
Q Consensus       448 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~i~~s~d~~~l~~~~  524 (1068)
                      +..+........+.........    ....++++..++.+.+|+........   ....+...+....+.+  ..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s  155 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS  155 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC----CCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCC
T ss_conf             0246410011111100001111----110000013566306861344544421210001135431100000--2201106


Q ss_pred             ECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEE
Q ss_conf             08889404999947887055687423345687379999139998999978990999995898079999089998997529
Q 001490          525 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  604 (1068)
Q Consensus       525 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  604 (1068)
                      .    ++.+.+||..+++.+..+.++.   ..+..+.++  +..+++++.||.|++||+.+...+.....+..    ...
T Consensus       156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~  222 (293)
T d1p22a2         156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR  222 (293)
T ss_dssp             T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred             C----CCCEEEECCCCCCEEEEECCCC---CCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCE----EEE
T ss_conf             9----9860410078883889971554---453221689--87588765899899986655614665214310----000


Q ss_pred             EEECCCCEEEEEECCCEEEEEECC
Q ss_conf             991599999999889919999879
Q 001490          605 CFNKNGTLLAVIANENRIKILETP  628 (1068)
Q Consensus       605 ~~s~~~~~l~~~~~dg~i~iwd~~  628 (1068)
                      .+++++.++++++.||.|++|++.
T Consensus       223 ~~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHH
T ss_pred             ECCCCCEEEEEECCCCEEEEEECC
T ss_conf             014541079998679979999888

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.98  E-value=5.9e-31  Score=217.20  Aligned_cols=202  Identities=16%  Similarity=0.112  Sum_probs=145.0

Q ss_pred             EEEEECC-CCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf             6989718-987599998286747999568986113420134313423421254331499866699999999998899958
Q 001490          314 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  392 (1068)
Q Consensus       314 ~~i~~sp-dg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~  392 (1068)
                      ..-.||| ||+ ++|+++. |.|.+||+.++..+.                    + +|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~-~~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGD-LIAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGG-CEEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred             HCCCCCCCCCC-EEEEEEC-CEEEEEECCCCCEEE--------------------C-CCCCCEEEEEECCCCCEEEEEEC
T ss_conf             00514688999-9999989-969999899994899--------------------1-69998888999899999999992


Q ss_pred             CC--EEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEE
Q ss_conf             96--8999983689764210897352355879997189991799999289939999789996246952689767998631
Q 001490          393 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  470 (1068)
Q Consensus       393 dg--~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~  470 (1068)
                      +.  .|++||..+++..    .+..|...|.+++|+||++  ++++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCCEE----EEECCCCEEEEEEECCCCC--CCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHC
T ss_conf             89989999989999488----7508971277412114543--21000111110000012221000000135520230121


Q ss_pred             ECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECC
Q ss_conf             01893199999858919999588998168724899718999981499889999608889404999947887055687423
Q 001490          471 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  550 (1068)
Q Consensus       471 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  550 (1068)
                      +  ++++|+.+..+.....                                    .+..+..+++|+..+++....... 
T Consensus       137 p--dg~~la~~~~~~~~~~------------------------------------~~~~~~~~~v~d~~~~~~~~~~~~-  177 (360)
T d1k32a3         137 D--NSRFIAYGFPLKHGET------------------------------------DGYVMQAIHVYDMEGRKIFAATTE-  177 (360)
T ss_dssp             T--TSCEEEEEEEECSSTT------------------------------------CSCCEEEEEEEETTTTEEEECSCS-
T ss_pred             C--CEEEEEEECCCCCCCE------------------------------------EECCCCCEEEECCCCCCEEEECCC-
T ss_conf             3--2256652123312110------------------------------------002565426630455713530354-


Q ss_pred             CCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
Q ss_conf             345687379999139998999978990999995898
Q 001490          551 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  586 (1068)
Q Consensus       551 ~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~  586 (1068)
                      .   ..+..+.|+|+++++++++.++.+.+|+....
T Consensus       178 ~---~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         178 N---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             S---SBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             C---CCCCCCCCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf             3---22110012577999999959985575333544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=2.5e-28  Score=199.75  Aligned_cols=201  Identities=14%  Similarity=0.094  Sum_probs=147.6

Q ss_pred             EEEECC-CCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECC--CCEEEEECCCCCE
Q ss_conf             999999-9998899958968999983689764210897352355879997189991799999289--9399997899962
Q 001490          377 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSR  453 (1068)
Q Consensus       377 ~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~  453 (1068)
                      .-.||| ||+++|+++ +|.|++||+.++...+    + +|...|.+++|+|||+  .|++++.+  ..|++||..+++.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred             CCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE----C-CCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCCE
T ss_conf             0514688999999998-9969999899994899----1-6999888899989999--99999928998999998999948


Q ss_pred             EEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf             46952689767998631018931999998589199995889981687248997189999814998899996088894049
Q 001490          454 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  533 (1068)
Q Consensus       454 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i  533 (1068)
                      . .+..|...+.+++|+|  +++++++++.++.+++|+.........+..+...+.+++|+|||++++.......     
T Consensus        79 ~-~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~-----  150 (360)
T d1k32a3          79 E-KFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH-----  150 (360)
T ss_dssp             E-ECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECS-----
T ss_pred             E-EEECCCCEEEEEEECC--CCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCC-----
T ss_conf             8-7508971277412114--5432100011111000001222100000013552023012132256652123312-----


Q ss_pred             EEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEE
Q ss_conf             99947887055687423345687379999139998999978990999995898079999089998997529991599999
Q 001490          534 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  613 (1068)
Q Consensus       534 ~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  613 (1068)
                                                        ..+.+..++.+++|+..+++........   ..+..++|+|+|+.|
T Consensus       151 ----------------------------------~~~~~~~~~~~~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l  193 (360)
T d1k32a3         151 ----------------------------------GETDGYVMQAIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNL  193 (360)
T ss_dssp             ----------------------------------STTCSCCEEEEEEEETTTTEEEECSCSS---SBEEEEEECTTSCEE
T ss_pred             ----------------------------------CCEEECCCCCEEEECCCCCCEEEECCCC---CCCCCCCCCCCCCEE
T ss_conf             ----------------------------------1100025654266304557135303543---221100125779999


Q ss_pred             EEEECCCEEEEEECCCC
Q ss_conf             99988991999987999
Q 001490          614 AVIANENRIKILETPES  630 (1068)
Q Consensus       614 ~~~~~dg~i~iwd~~~~  630 (1068)
                      ++++.++.+.+|+....
T Consensus       194 ~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         194 YYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             EEEESCCCCCEECSSSS
T ss_pred             EEEECCCCEECCCCCCC
T ss_conf             99959985575333544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=3e-23  Score=165.93  Aligned_cols=275  Identities=12%  Similarity=0.100  Sum_probs=192.1

Q ss_pred             EEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECC
Q ss_conf             59999828674799956898611342013431342342125433149986669999999999889-99589689999836
Q 001490          324 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH  402 (1068)
Q Consensus       324 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la-s~~~dg~i~iwd~~  402 (1068)
                      ++.++++.|++|.+||+.+++.+.+..                    ....+..++|+|||++|+ ++..++.|.+||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEEE--------------------CCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
T ss_conf             999997899989999999995999998--------------------899836999928989999997899989999999


Q ss_pred             CCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEE-EEE
Q ss_conf             8976421089735235587999718999179999928993999978999624695268976799863101893199-999
Q 001490          403 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  481 (1068)
Q Consensus       403 ~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~  481 (1068)
                      +++.+.   .+..+. .+..++|++++.. +++++..++.+.+|+..+++....+..+ .....+++++  ++..+ +++
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN  134 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred             CCCEEE---EEECCC-CCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEEC--CCCEEEEEE
T ss_conf             894103---200024-6431100011111-1111111100110012430243202444-4423787605--897155420


Q ss_pred             ECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf             85891999958899816872489971899998149988999960888940499994788705568742334568737999
Q 001490          482 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  561 (1068)
Q Consensus       482 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~  561 (1068)
                      ..++.+.+|+..+......+... ..+..+.+++++..++++..+   ...+.+|+..............    ....+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  206 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA----APSGIA  206 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS----EEEEEE
T ss_pred             CCCCCEEEEECCCCCEEEECCCC-CCCEEEEEECCCCCEEEECCC---CCCCCCCCCCCEEEEECCCCCC----CCCEEE
T ss_conf             11110011000146303531567-884288860465401310121---1111111111000111013357----750311


Q ss_pred             EECCCCEEEEEE---CCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEE-EEECCCEEEEEECCCCCEEEECC
Q ss_conf             913999899997---89909999958980799990899989975299915999999-99889919999879996455213
Q 001490          562 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAG  637 (1068)
Q Consensus       562 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~  637 (1068)
                      +++++..++.+.   .++.|++||..+++.+..+..+.   .+..++|+|||++++ +++.++.|.+||..+++.+.++.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCC---CEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf             01111011110021000023236569981999984899---877999918989999998999969999999995999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=7.5e-24  Score=169.95  Aligned_cols=75  Identities=8%  Similarity=-0.061  Sum_probs=45.8

Q ss_pred             CEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCC
Q ss_conf             98899958968999983689764210897352355879997189991799999289939999789996246952689
Q 001490          385 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  461 (1068)
Q Consensus       385 ~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~  461 (1068)
                      +|+++++.|++|.+||+.+++.+... ....+...+.+++|+|||+. ++++++.++.|.+||+.+++.+.++..+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             EEEEEECCCCEEEEEECCCCEEEEEE-ECCCCCCCCCEEEECCCCCE-EEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf             69999767998999999999499999-87788998237999999899-99997899949999999992988872477

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.3e-23  Score=166.74  Aligned_cols=92  Identities=10%  Similarity=0.018  Sum_probs=42.5

Q ss_pred             EEEEECCCCEEEEE-ECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf             99999467535777-55899986999980799989999978980999994885035650145558699999289999999
Q 001490          801 ISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS  879 (1068)
Q Consensus       801 i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s  879 (1068)
                      +.+|+..++..... +..+......+++++ ++.+++.+  ++.+++||+.+++.+..+. +...+.+++|+|||++|++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v  296 (337)
T d1pbyb_         221 LLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWL  296 (337)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEE
T ss_conf             799986888588898328875058887426-61399973--5528999898896999974-8998899999789999999


Q ss_pred             EECCCCEEEEECCCCCE
Q ss_conf             93898399998799824
Q 001490          880 SGGDAQIFVWDVDGWGI  896 (1068)
Q Consensus       880 ~s~dg~i~iwd~~~~~~  896 (1068)
                      ++.|+.|++||..+++.
T Consensus       297 ~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         297 GGALGDLAAYDAETLEK  313 (337)
T ss_dssp             ESBSSEEEEEETTTCCE
T ss_pred             EECCCCEEEEECCCCCE
T ss_conf             94999299999998769

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=6.5e-24  Score=170.35  Aligned_cols=77  Identities=6%  Similarity=-0.057  Sum_probs=47.7

Q ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEC-CCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf             9999999988999589689999836897642108973-523558799971899917999992899399997899962469
Q 001490          378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       378 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                      ++|+++++||++++.+++|.+||+.+++.++   ++. .+...+.+++|+|||+. +++++..++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCCEEE---EEECCCCCCCCEEEECCCCCE-EEEEECCCCCEEEEECCCCEEEEE
T ss_conf             5588999699998699979999999998999---999489997045999789899-999978999399996756713123


Q ss_pred             EC
Q ss_conf             52
Q 001490          457 FE  458 (1068)
Q Consensus       457 ~~  458 (1068)
                      +.
T Consensus        78 ~~   79 (346)
T d1jmxb_          78 AN   79 (346)
T ss_dssp             EE
T ss_pred             EC
T ss_conf             10

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=2.4e-21  Score=153.30  Aligned_cols=198  Identities=12%  Similarity=0.120  Sum_probs=109.6

Q ss_pred             EEEEEECCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEE
Q ss_conf             0999824999999994--991999994675357775589998699998079998999-9978980999994885035650
Q 001490          782 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEVISKL  858 (1068)
Q Consensus       782 ~~i~~s~dg~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~i~iwd~~~~~~~~~~  858 (1068)
                      ..+++++++.++++..  ++.+.+|+..+++....+. +.....+++++| ++..++ ++..++.+.+|+..+.+.+..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECC-CCCCCEEEEEEC-CCCEEEEEECCCCCEEEEECCCCCEEEEC
T ss_conf             3110001111111111111001100124302432024-444423787605-89715542011110011000146303531


Q ss_pred             CCCCCCEEEEEECCCCCEEEEEECC-CCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEEE-EE---CC
Q ss_conf             1455586999992899999999389-8399998799824533333147986568998259999208999999-95---79
Q 001490          859 EGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ET  933 (1068)
Q Consensus       859 ~~h~~~V~~i~~spdg~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~---d~  933 (1068)
                      ..+ ..+..++++|+++.+++++.+ +.+.+|+....+...  .....   .    ....++|++++..+++ ..   ++
T Consensus       155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~----~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID--TVKVE---A----APSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--EEECS---S----EEEEEEECTTSSEEEEEEECSSCC
T ss_pred             CCC-CCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEE--CCCCC---C----CCCEEECCCCCCCCCCCCCCCEEE
T ss_conf             567-8842888604654013101211111111111000111--01335---7----750311011110111100210000


Q ss_pred             EEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEE-EEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             099998787403323013777688999995289999-999899929999958990898962
Q 001490          934 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       934 ~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs~dg~~l-~t~~~dg~i~vwd~~~~~~~~~~~  993 (1068)
                      .+.+||..+++.+..+.  +...+..++|+|||++| ++++.|+.|.+||+.+++++..+.
T Consensus       225 ~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEC--CCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf             23236569981999984--899877999918989999998999969999999995999996

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.94  E-value=2e-20  Score=147.18  Aligned_cols=331  Identities=11%  Similarity=0.013  Sum_probs=176.3

Q ss_pred             CCCCEEEEEECCCCCEEEEE-----ECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEE---------
Q ss_conf             98666999999999988999-----5896899998368976421089735235587999718999179999---------
Q 001490          371 PGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT---------  436 (1068)
Q Consensus       371 h~~~V~~i~~spdg~~las~-----~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s---------  436 (1068)
                      +..++..++++|||+.+++.     +..+.+.+||..+++.+.   .+..+..  ..++|+|||++  +++         
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~--~~~a~SpDG~~--l~va~~~~~~~~   91 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFL--PNPVAAHSGSE--FALASTSFSRIA   91 (373)
T ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEE---EEECCCC--CCEEECCCCCE--EEEEEECCCCCC
T ss_conf             7898656301899978999734225787659999899997999---9957988--60798689998--999960577532


Q ss_pred             -EECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECC
Q ss_conf             -9289939999789996246952689767998631018931999998589199995889981687248997189999814
Q 001490          437 -CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA  515 (1068)
Q Consensus       437 -~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~  515 (1068)
                       +..++.|.+||..+++.+..+..+..........+                                     ..+.|++
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~s~  134 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNANTP  134 (373)
T ss_pred             CCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCC-------------------------------------CCEEEEE
T ss_conf             124531899997778938889726885136851689-------------------------------------7089985


Q ss_pred             CCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCEE-EEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf             998899996088894049999478870556874233456873799991399989-9997899099999589807999908
Q 001490          516 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDA  594 (1068)
Q Consensus       516 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~  594 (1068)
                      +++.++....+.  +..+.+|+....+......       ...++.++++++.+ ++.+.|+.+.+|+...+........
T Consensus       135 dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         135 NNADLLFFQFAA--GPAVGLVVQGGSSDDQLLS-------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             CCCCEEEEEECC--CCCEEEEECCCCEEEEEEC-------CCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf             899379999869--8746776236872899824-------5206999628991999994799399997477426678863


Q ss_pred             CCC----CCCCCEEEEECCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCC
Q ss_conf             999----8997529991599999999889919999879996455213346650354773786400001246705644899
Q 001490          595 GGG----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP  670 (1068)
Q Consensus       595 ~~~----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1068)
                      ...    ........+.+++ .++..+.++.+.+|+...........                                 
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------------------  251 (373)
T d2madh_         206 AMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAP---------------------------------  251 (373)
T ss_pred             ECCCCCCCCEEEEEEECCCC-EEEEECCCCEEEEEECCCCEEEEEEE---------------------------------
T ss_conf             00366753043458878994-29992589659999768990789776---------------------------------


Q ss_pred             CCCCCCCEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf             87753220102565200101232278665100037733443289999955886599941276079876467765777541
Q 001490          671 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA  750 (1068)
Q Consensus       671 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  750 (1068)
                                        |+.                 +........+.+.....++.+.++...               
T Consensus       252 ------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------  281 (373)
T d2madh_         252 ------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI---------------  281 (373)
T ss_pred             ------------------ECC-----------------CCCCEEEEEECCCCCEEEEEECCCCEE---------------
T ss_conf             ------------------305-----------------647578664136741335771499759---------------


Q ss_pred             EECCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEEC
Q ss_conf             00158942378999932330578999999830999824999999994-99199999467535777558999869999807
Q 001490          751 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  829 (1068)
Q Consensus       751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  829 (1068)
                                                       ..+..++..++... ++.+.+||..+++.+..+. +...+..++|+|
T Consensus       282 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp  327 (373)
T d2madh_         282 ---------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ  327 (373)
T ss_pred             ---------------------------------EEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECC
T ss_conf             ---------------------------------9954888247862589869999899996989866-899825899998


Q ss_pred             CCCC--EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             9998--9999978980999994885035650145558699999289
Q 001490          830 HDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  873 (1068)
Q Consensus       830 ~d~~--~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spd  873 (1068)
                       ||+  ++++++.|+.|++||+.+++.+..+..+....+.+++.++
T Consensus       328 -DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         328 -DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             -CCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf             -999899999679992999999999899998888989818998468

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=3.2e-24  Score=172.40  Aligned_cols=96  Identities=10%  Similarity=-0.025  Sum_probs=46.8

Q ss_pred             EEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEE-EECCC
Q ss_conf             89718987599998286747999568986113420134313423421254331499866699999999998899-95896
Q 001490          316 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYSKH  394 (1068)
Q Consensus       316 i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las-~~~dg  394 (1068)
                      ++|+++++ ++++++.+++|.+||+.+++.+.+..+                  .+...+.+++|+|||+++++ +..++
T Consensus         2 ~a~~~~~~-~l~~~~~~~~v~v~D~~t~~~~~t~~~------------------~~~~~p~~l~~spDG~~l~v~~~~~~   62 (346)
T d1jmxb_           2 PALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNHYG   62 (346)
T ss_dssp             CCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETTTT
T ss_pred             CCCCCCCC-EEEEECCCCEEEEEECCCCCEEEEEEC------------------CCCCCCCEEEECCCCCEEEEEECCCC
T ss_conf             55889996-999986999799999999989999994------------------89997045999789899999978999


Q ss_pred             EEEEEECCCCCCCCCEEEE---CCCCCCEEEEEECCCCC
Q ss_conf             8999983689764210897---35235587999718999
Q 001490          395 IVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCK  430 (1068)
Q Consensus       395 ~i~iwd~~~~~~~~~~~~~---~~h~~~V~~i~~s~d~~  430 (1068)
                      .|.+||+.+++........   ..+...+..++|+|||+
T Consensus        63 ~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~  101 (346)
T d1jmxb_          63 DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK  101 (346)
T ss_dssp             EEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred             CEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf             399996756713123103654345477417999905888

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.93  E-value=2.5e-20  Score=146.56  Aligned_cols=123  Identities=11%  Similarity=-0.046  Sum_probs=57.9

Q ss_pred             CCCCCCEEEEECCCCCEEEEEEC----CCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             58889569897189875999982----86747999568986113420134313423421254331499866699999999
Q 001490          308 EGSSSPMSMDFHPVQHTLLLVGT----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  383 (1068)
Q Consensus       308 ~h~~~V~~i~~spdg~~lla~g~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd  383 (1068)
                      .+..++..++++|||++++++..    ..+.|.+||..+++.+.+                   +..+..  ..++||||
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD   76 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS   76 (373)
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEE-------------------EECCCC--CCEEECCC
T ss_conf             678986563018999789997342257876599998999979999-------------------957988--60798689


Q ss_pred             CCEEEEEEC----------CCEEEEEECCCCCCCCCEEEECCCCCCE-------EEEEECCCCCCEEEEEEECCCCEEEE
Q ss_conf             998899958----------9689999836897642108973523558-------79997189991799999289939999
Q 001490          384 GSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDDKTIKVW  446 (1068)
Q Consensus       384 g~~las~~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~~V-------~~i~~s~d~~~~~l~s~~~d~~i~iw  446 (1068)
                      |++|+++..          ++.|.+||..+++...   .+..+....       ..+.|+++++.+++.....++.+.+|
T Consensus        77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             CCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEE---EEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEE
T ss_conf             99899996057753212453189999777893888---972688513685168970899858993799998698746776


Q ss_pred             ECCCCCEE
Q ss_conf             78999624
Q 001490          447 DAVTGSRT  454 (1068)
Q Consensus       447 d~~~~~~~  454 (1068)
                      +....+..
T Consensus       154 ~~~~~~~~  161 (373)
T d2madh_         154 VQGGSSDD  161 (373)
T ss_pred             ECCCCEEE
T ss_conf             23687289

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.8e-20  Score=145.36  Aligned_cols=73  Identities=15%  Similarity=0.163  Sum_probs=45.7

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             91999994675357775589998699998079998--9999978980999994885035650145558699999289
Q 001490          799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  873 (1068)
Q Consensus       799 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spd  873 (1068)
                      +.+.+||..+++.+..+. +...+.+++|+| ||+  +++++..|+.|++||+.+++.+..+.++......+.+.++
T Consensus       280 ~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         280 RFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             CEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf             759998678884989966-899877999928-999699999789998999999999899999286979658996999

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4e-18  Score=131.85  Aligned_cols=77  Identities=18%  Similarity=0.108  Sum_probs=28.9

Q ss_pred             CCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEE-CCCCEEEEEC
Q ss_conf             986669999999999889995-89689999836897642108973523558799971899917999992-8993999978
Q 001490          371 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDA  448 (1068)
Q Consensus       371 h~~~V~~i~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~-~d~~i~iwd~  448 (1068)
                      |.+.|..++|||||++|++++ .++.|.+|++..............+...+..++|+|||+  ++++++ .++.+.+|+.
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~  112 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRL  112 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCC--EEEECCCCCCCEEEECC
T ss_conf             7998868999589799999977899699999968987079853013699854999959998--87420568883022001


Q ss_pred             C
Q ss_conf             9
Q 001490          449 V  449 (1068)
Q Consensus       449 ~  449 (1068)
                      .
T Consensus       113 ~  113 (333)
T d1ri6a_         113 E  113 (333)
T ss_dssp             E
T ss_pred             C
T ss_conf             1

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.6e-18  Score=133.16  Aligned_cols=25  Identities=4%  Similarity=-0.035  Sum_probs=9.0

Q ss_pred             EEEEEEECCCCEEEEEEC-CCCEEEE
Q ss_conf             899999528999999989-9929999
Q 001490          957 ISQATFSCDCRMVFTSFV-DGTLSIH  981 (1068)
Q Consensus       957 i~~l~fs~dg~~l~t~~~-dg~i~vw  981 (1068)
                      +..++|+|||++|++++. ++.|++|
T Consensus       278 p~~~a~spDGk~l~va~~~~~~v~v~  303 (333)
T d1ri6a_         278 PRGFNVDHSGKYLIAAGQKSHHISVY  303 (333)
T ss_dssp             CCCEEECTTSSEEEEECTTTCEEEEE
T ss_pred             EEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf             62899907989999998899939999

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.6e-19  Score=141.15  Aligned_cols=17  Identities=41%  Similarity=0.348  Sum_probs=6.2

Q ss_pred             CCCEEEEECCCCCEEEE
Q ss_conf             99299999589908989
Q 001490          975 DGTLSIHEASNLEVQCR  991 (1068)
Q Consensus       975 dg~i~vwd~~~~~~~~~  991 (1068)
                      |+.|++||+.+++.+..
T Consensus       322 d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         322 DKTLYIHDAESGEELRS  338 (355)
T ss_dssp             TTEEEEEETTTCCEEEE
T ss_pred             CCEEEEEECCCCCEEEE
T ss_conf             99899999999989999

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=2.2e-16  Score=120.27  Aligned_cols=121  Identities=13%  Similarity=0.106  Sum_probs=92.0

Q ss_pred             EEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-
Q ss_conf             6989718987599998286747999568986113420134313423421254331499866699999999998899958-
Q 001490          314 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-  392 (1068)
Q Consensus       314 ~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-  392 (1068)
                      ..+.|.+|++ ++..  .++.+.+||+.+++.....              ....+..|...|.++.|||||++|++++. 
T Consensus        20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~--------------~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~   82 (470)
T d2bgra1          20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVFL--------------ENSTFDEFGHSINDYSISPDGQFILLEYNY   82 (470)
T ss_dssp             CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEE--------------CTTTTTTSSSCCCEEEECTTSSEEEEEEEE
T ss_pred             CCCEECCCCE-EEEE--CCCCEEEEECCCCCEEEEE--------------CHHHHHHCCCCCCEEEECCCCCEEEEEECC
T ss_conf             5789689997-9997--5994999988999789997--------------015644316765405998988979999777


Q ss_pred             --------CCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             --------968999983689764210897352355879997189991799999289939999789996246952
Q 001490          393 --------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       393 --------dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                              ++.+.+||+.+++..    .+..+...+..+.|||||+  .++... ++.+++|+..++.......
T Consensus        83 ~~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~~-~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1          83 VKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             EECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred             CCEEEECCCCEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCC--EEEEEE-CCCCEEEECCCCCEEEEEE
T ss_conf             10001046734999989888513----1246874231010146764--135751-4641379889994653210

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.78  E-value=2.8e-15  Score=112.94  Aligned_cols=88  Identities=11%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             EEEECCCCCEEEEEECCCEEEEEECCCCCCCCCE--EEECCCCCCEEEEEECCCCCCEEEEEEEC---------CCCEEE
Q ss_conf             9999999998899958968999983689764210--89735235587999718999179999928---------993999
Q 001490          377 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ--LEIDAHVGNVNDLAFSAPCKQISVITCGD---------DKTIKV  445 (1068)
Q Consensus       377 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--~~~~~h~~~V~~i~~s~d~~~~~l~s~~~---------d~~i~i  445 (1068)
                      .+.|.+|++++..  .++.+.+||+.+++.....  ..+..|...|.+..||||++  +|+.++.         ++.+.+
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCC--EEEEEECCCCEEEECCCCEEEE
T ss_conf             7896899979997--59949999889997899970156443167654059989889--7999977710001046734999


Q ss_pred             EECCCCCEEEEECCCCCCEEEEEE
Q ss_conf             978999624695268976799863
Q 001490          446 WDAVTGSRTYSFEGHGAPVYSLCP  469 (1068)
Q Consensus       446 wd~~~~~~~~~~~~h~~~v~~i~~  469 (1068)
                      ||+.+++. ..+..+...+..+.|
T Consensus        97 ~d~~~~~~-~~l~~~~~~~~~~~~  119 (470)
T d2bgra1          97 YDLNKRQL-ITEERIPNNTQWVTW  119 (470)
T ss_dssp             EETTTTEE-CCSSCCCTTEEEEEE
T ss_pred             EECCCCCC-CCCCCCCCCCCCCCC
T ss_conf             98988851-312468742310101

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=8e-16  Score=116.56  Aligned_cols=57  Identities=19%  Similarity=0.090  Sum_probs=24.6

Q ss_pred             EEEEECCCCEEEEEECCCCCCEEEEEEECCCCC--EEEEEECCCEEEEEECCCCEEEEEEC
Q ss_conf             999994675357775589998699998079998--99999789809999948850356501
Q 001490          801 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLE  859 (1068)
Q Consensus       801 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~i~iwd~~~~~~~~~~~  859 (1068)
                      +.+||..+++.+.++. +...+.+++|+| |++  +++++..|+.|++||..+++.+..++
T Consensus       296 v~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         296 TSSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEE
T ss_conf             9999899994868955-899651799998-9998999994899969999899997999987

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.7e-16  Score=121.06  Aligned_cols=18  Identities=6%  Similarity=-0.180  Sum_probs=7.1

Q ss_pred             CCCEEEEECCCCCEEEEE
Q ss_conf             993999978999624695
Q 001490          440 DKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       440 d~~i~iwd~~~~~~~~~~  457 (1068)
                      ++.+.+||+.+++....+
T Consensus       145 ~~~v~~~d~~~~~~~~~~  162 (368)
T d1mdah_         145 SSAAAGLSVPGASDDQLT  162 (368)
T ss_dssp             SSCEEEEEETTTEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEE
T ss_conf             985999989989386786

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.69  E-value=2.9e-17  Score=126.13  Aligned_cols=100  Identities=16%  Similarity=0.146  Sum_probs=55.3

Q ss_pred             EEEEEEECCCCEEEEEE--CCEEEEEECCCCEEE--------EEEC---CCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf             30999824999999994--991999994675357--------7755---8999869999807999899999789809999
Q 001490          781 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTI--------LTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIY  847 (1068)
Q Consensus       781 v~~i~~s~dg~~l~~~~--dg~i~iwd~~~~~~~--------~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw  847 (1068)
                      ...+.++|||++++++.  ++++.+||+.+....        ..+.   ...-.....+|++ +|..+.+...|..|..|
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw  338 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKW  338 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEE
T ss_pred             CCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEE
T ss_conf             66726899987899907759938999832244575256884247996014554766522657-85599852443168972


Q ss_pred             ECCCC----------EEEEEE-----CCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             94885----------035650-----14555869999928999999993
Q 001490          848 NARSS----------EVISKL-----EGHSKRVTGLVFSDALNILVSSG  881 (1068)
Q Consensus       848 d~~~~----------~~~~~~-----~~h~~~V~~i~~spdg~~l~s~s  881 (1068)
                      ++...          ..+..+     .||...+.+.+++|||++|++++
T Consensus       339 ~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         339 NIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             CCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             3542213322677765686453266898775245422389884899657

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=6.8e-16  Score=117.03  Aligned_cols=105  Identities=13%  Similarity=0.083  Sum_probs=46.1

Q ss_pred             EECCCCEEEEEECCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEE--------E
Q ss_conf             824999999994991999994675357775589998699998079998999-9978980999994885035--------6
Q 001490          786 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEVI--------S  856 (1068)
Q Consensus       786 ~s~dg~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~i~iwd~~~~~~~--------~  856 (1068)
                      ++++|+++..+.++.+.+++....+.+..+.... ....+.++| ||++++ ++..+++|.+||+.+.+..        .
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             EECCCCEEEECCCCCEEEECCCCCCEEEEEECCC-CCCCCEECC-CCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCE
T ss_conf             9669999996999828998036870689971798-866726899-98789990775993899983224457525688424


Q ss_pred             EECCCC---CCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf             501455---586999992899999999389839999879
Q 001490          857 KLEGHS---KRVTGLVFSDALNILVSSGGDAQIFVWDVD  892 (1068)
Q Consensus       857 ~~~~h~---~~V~~i~~spdg~~l~s~s~dg~i~iwd~~  892 (1068)
                      .+.++.   -.....+|.++|..+.+.+.|..|..|++.
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EEEEECCCCCCCCCCEECCCCEEEECCCCCCEEEEECCC
T ss_conf             799601455476652265785599852443168972354

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.60  E-value=2.5e-10  Score=80.05  Aligned_cols=26  Identities=12%  Similarity=-0.072  Sum_probs=9.3

Q ss_pred             EEEEEC-CCCEEEEEE-CCCCEEEEECC
Q ss_conf             999952-899999998-99929999958
Q 001490          959 QATFSC-DCRMVFTSF-VDGTLSIHEAS  984 (1068)
Q Consensus       959 ~l~fs~-dg~~l~t~~-~dg~i~vwd~~  984 (1068)
                      .++++| +|++|+++. .++.|.+|++.
T Consensus       313 ~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         313 AVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EEEECCCCCCEEEEEECCCCEEEEEEEE
T ss_conf             7896489999999996799949999982

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-11  Score=85.96  Aligned_cols=118  Identities=13%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             EECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE-----
Q ss_conf             971898759999828674799956898611342013431342342125433149986669999999999889995-----
Q 001490          317 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-----  391 (1068)
Q Consensus       317 ~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~-----  391 (1068)
                      .|.+++. ++. -..+|.+.+||+.+++.......                ..-....+....||||+++++...     
T Consensus        23 ~W~~~~~-~~~-~~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTE-FIY-REQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSC-BCC-CCSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEECCCC-EEE-EECCCCEEEEECCCCCEEEEECC----------------CCCCCCCCCEEEECCCCCEEEEEECCCCE
T ss_conf             8917984-899-92899699998789988998727----------------64444553213898988869999845100


Q ss_pred             ----CCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf             ----89689999836897642108973523558799971899917999992899399997899962469
Q 001490          392 ----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       392 ----~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  456 (1068)
                          ..+...++|+.++.... +.........+....|||||+.  ++-.. ++.|.+.+..++..++.
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~l  149 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRV  149 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEE
T ss_pred             EEEECCCCEEEEECCCCCEEE-CCCCCCCCCCCCEEEECCCCCE--EEEEE-CCEEEEEECCCCCEEEE
T ss_conf             476033528999856884564-1576677643110024267856--99996-13299995489965897

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.57  E-value=1e-10  Score=82.62  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=11.5

Q ss_pred             CCEEEEECCCCEEEEEEC-CCEEEEEECC
Q ss_conf             752999159999999988-9919999879
Q 001490          601 NPRICFNKNGTLLAVIAN-ENRIKILETP  628 (1068)
Q Consensus       601 v~~v~~s~~~~~l~~~~~-dg~i~iwd~~  628 (1068)
                      ...++|+|+++++++..+ +++|.+|+..
T Consensus       195 Pr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             08999889986699951589989999955

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.44  E-value=2.1e-09  Score=73.87  Aligned_cols=256  Identities=11%  Similarity=0.087  Sum_probs=135.0

Q ss_pred             CCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEE
Q ss_conf             75112442135888956989718987599998286747999568986113420134313423421254331499866699
Q 001490          298 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  377 (1068)
Q Consensus       298 ~p~~~~~~l~~h~~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  377 (1068)
                      .|.+++..+...+ .+..++++|||+ |+++...+++|..|+.......                     +......+.+
T Consensus        16 ~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~g   72 (302)
T d2p4oa1          16 APAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSG   72 (302)
T ss_dssp             CCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEE
T ss_pred             CCCCEEEECCCCC-CCCCEEECCCCC-EEEEECCCCEEEEEECCCCEEE---------------------EECCCCCCCE
T ss_conf             8620788888998-847877999988-9999688998999908998899---------------------9717998536


Q ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf             99999999889995896899998368976421089735235587999718999179999928993999978999624695
Q 001490          378 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       378 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  457 (1068)
                      ++|++||+++++...++.+..|+......................+++.++++  ++++...++.+..++...+......
T Consensus        73 la~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~  150 (302)
T d2p4oa1          73 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL  150 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCC--EEEECCCCCCCEEEECCCCCCEEEE
T ss_conf             89867788699832895378887101111012102357863221667715797--8750356554102421687303675


Q ss_pred             CCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf             26897679986310189319999985891999958899816872489971899998149988999960888940499994
Q 001490          458 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  537 (1068)
Q Consensus       458 ~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd  537 (1068)
                      .......                                  ............+.+.  +..++....   ..+.|+.++
T Consensus       151 ~~~~~~~----------------------------------~~~~~~~~~~ngi~~~--~~~l~~~~~---~~~~i~~~~  191 (302)
T d2p4oa1         151 EHPMLAR----------------------------------SNSESVFPAANGLKRF--GNFLYVSNT---EKMLLLRIP  191 (302)
T ss_dssp             ECGGGSC----------------------------------SSTTCCSCSEEEEEEE--TTEEEEEET---TTTEEEEEE
T ss_pred             CCCCCCE----------------------------------EECCCCCCCCCCCCCC--CCCEEEECC---CCCEEEECC
T ss_conf             1886401----------------------------------4315763224320116--983044037---887698634


Q ss_pred             CCCCEEEEEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEE---ECCCCEEE
Q ss_conf             788705568742334568737999913999899997899099999589807999908999899752999---15999999
Q 001490          538 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF---NKNGTLLA  614 (1068)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l~  614 (1068)
                      .............. .......+++.++++.+++...++.|..++.. ++...............+++|   ++|++.|+
T Consensus       192 ~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         192 VDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             BCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CCCCCCCCCCCCCC-CCCCCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEE
T ss_conf             43333234531015-89987523787999999997489918998789-97899996378988824899708788789899


Q ss_pred             EEECC
Q ss_conf             99889
Q 001490          615 VIANE  619 (1068)
Q Consensus       615 ~~~~d  619 (1068)
                      +++..
T Consensus       270 vtt~~  274 (302)
T d2p4oa1         270 VVTNG  274 (302)
T ss_dssp             EEECT
T ss_pred             EECCC
T ss_conf             99889

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.2e-09  Score=73.81  Aligned_cols=54  Identities=20%  Similarity=0.283  Sum_probs=19.8

Q ss_pred             CCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCC
Q ss_conf             6669999999999889995896---899998368976421089735235587999718999
Q 001490          373 VSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK  430 (1068)
Q Consensus       373 ~~V~~i~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~  430 (1068)
                      ..+...+|||||++||......   .+.+.+..++...    .+..+........|+|+|+
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~   95 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGS   95 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSS
T ss_pred             CCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE----EEEEEECCCCCCEECCCCC
T ss_conf             84260388789998999981526751344311367506----7764202454302448898

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=2.1e-09  Score=73.88  Aligned_cols=152  Identities=9%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             EEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf             69999807999899999789809999948850356501455586999992899999999389839999879982453333
Q 001490          822 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS  901 (1068)
Q Consensus       822 i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~  901 (1068)
                      ...+++++ +++++++....+.+++++-.+...+....+ ......+++.++++++++-.....+..++.......    
T Consensus        59 p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----  132 (260)
T d1rwia_          59 PQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----  132 (260)
T ss_dssp             CCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----
T ss_pred             CEEEEECC-CCCEEEEEEEECEEEEEEECCCEEEEEEEE-EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE----
T ss_conf             40899938-998898631000035542112000000100-000000024553205750335553211232222012----


Q ss_pred             EECCCCCCCCCCCCEEEEEEECCCEEEE-EECCEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf             3147986568998259999208999999-957909999878740332301377768899999528999999989992999
Q 001490          902 LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI  980 (1068)
Q Consensus       902 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~v  980 (1068)
                      .....+..    ....++++++|+++++ ..++.+..++........ +..........+++.++|.++++....+.|..
T Consensus       133 ~~~~~~~~----~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~  207 (260)
T d1rwia_         133 VLPFTGLN----DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK  207 (260)
T ss_dssp             ECCCCSCC----SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             EEEECCCC----CCCEEEECCCCCEEEECCCCCCCCCCCCCCCEEEE-EECCCCCCCCCCEEEEEEEEEEEECCCCEEEE
T ss_conf             23203667----75205454899886410256433222343100122-21011478763123100013432148998999


Q ss_pred             EECC
Q ss_conf             9958
Q 001490          981 HEAS  984 (1068)
Q Consensus       981 wd~~  984 (1068)
                      ++..
T Consensus       208 ~~~~  211 (260)
T d1rwia_         208 LLAG  211 (260)
T ss_dssp             ECTT
T ss_pred             EECC
T ss_conf             9699

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6.5e-09  Score=70.63  Aligned_cols=10  Identities=20%  Similarity=0.318  Sum_probs=3.3

Q ss_pred             EEEECCCCEE
Q ss_conf             9995289999
Q 001490          960 ATFSCDCRMV  969 (1068)
Q Consensus       960 l~fs~dg~~l  969 (1068)
                      ..|||||++|
T Consensus       219 p~~SPDG~~i  228 (269)
T d2hqsa1         219 PSLAPNGTMV  228 (269)
T ss_dssp             EEECTTSSEE
T ss_pred             EEECCCCCEE
T ss_conf             5898999999

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.35  E-value=1.1e-08  Score=69.24  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=36.8

Q ss_pred             EEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEE-ECCCEEEEEECC
Q ss_conf             379999139998999978990999995898079999089998997529991599999999-889919999879
Q 001490          557 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETP  628 (1068)
Q Consensus       557 i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~  628 (1068)
                      ...+++..+++..++....+.|.+|+.+.+..+..+..+.  ....+++|.++++.|++. ..++.|...++.
T Consensus       228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCC--CCEEEEEEECCCCEEEEEECCCCCEEEEECC
T ss_conf             1025783478579998279999999699997999997999--9878999928989999998789919999789

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.35  E-value=5.3e-09  Score=71.21  Aligned_cols=29  Identities=17%  Similarity=0.214  Sum_probs=11.8

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             69999928999999993898399998799
Q 001490          865 VTGLVFSDALNILVSSGGDAQIFVWDVDG  893 (1068)
Q Consensus       865 V~~i~~spdg~~l~s~s~dg~i~iwd~~~  893 (1068)
                      ...+++.++++++++.+.++.+..++...
T Consensus       115 ~n~i~~~~~g~~~v~~~~~~~i~~~~~~~  143 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADSYRGAIWLIDVVQ  143 (302)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred             CCEEEECCCCCEEEECCCCCCCEEEECCC
T ss_conf             21667715797875035655410242168

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.8e-08  Score=66.42  Aligned_cols=78  Identities=14%  Similarity=0.196  Sum_probs=44.8

Q ss_pred             CCEEEEECCCCCEEEEEE--------CCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             956989718987599998--------286747999568986113420134313423421254331499866699999999
Q 001490          312 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  383 (1068)
Q Consensus       312 ~V~~i~~spdg~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd  383 (1068)
                      .+....|||||+++++..        +..+.+.++|+.++.......                 .......+....||||
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~-----------------~~~~~~~l~~~~wSPD  124 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP-----------------PEVSNAKLQYAGWGPK  124 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC-----------------TTCCSCCCSBCCBCSS
T ss_pred             CCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCC-----------------CCCCCCCCCEEEECCC
T ss_conf             53213898988869999845100476033528999856884564157-----------------6677643110024267


Q ss_pred             CCEEEEEECCCEEEEEECCCCCCC
Q ss_conf             998899958968999983689764
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDA  407 (1068)
Q Consensus       384 g~~las~~~dg~i~iwd~~~~~~~  407 (1068)
                      |+.+|... ++.+.+.+..++...
T Consensus       125 G~~iafv~-~~nl~~~~~~~~~~~  147 (465)
T d1xfda1         125 GQQLIFIF-ENNIYYCAHVGKQAI  147 (465)
T ss_dssp             TTCEEEEE-TTEEEEESSSSSCCE
T ss_pred             CCEEEEEE-CCEEEEEECCCCCEE
T ss_conf             85699996-132999954899658

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.31  E-value=9.7e-09  Score=69.48  Aligned_cols=21  Identities=10%  Similarity=0.284  Sum_probs=7.9

Q ss_pred             EEEEECCCCCEEEEEECCCEE
Q ss_conf             999999999988999589689
Q 001490          376 NRVVWSPDGSLLGVAYSKHIV  396 (1068)
Q Consensus       376 ~~i~~spdg~~las~~~dg~i  396 (1068)
                      ..+++++++..+++....+.+
T Consensus        60 ~gvav~~~g~i~v~d~~~~~i   80 (260)
T d1rwia_          60 QGLAVDGAGTVYVTDFNNRVV   80 (260)
T ss_dssp             CCEEECTTCCEEEEETTTEEE
T ss_pred             EEEEECCCCCEEEEEEEECEE
T ss_conf             089993899889863100003

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.25  E-value=5.6e-08  Score=64.43  Aligned_cols=50  Identities=16%  Similarity=0.319  Sum_probs=17.0

Q ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf             999807999899999789809999948850356501455586999992899
Q 001490          824 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL  874 (1068)
Q Consensus       824 ~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg  874 (1068)
                      .+++.+ +|++.++....+.|.+|+...++.+..+.......++++|.||+
T Consensus       230 GiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~  279 (314)
T d1pjxa_         230 GMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT  279 (314)
T ss_dssp             EEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTS
T ss_pred             EEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCC
T ss_conf             257834-78579998279999999699997999997999987899992898

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=2.1e-07  Score=60.63  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=8.8

Q ss_pred             EEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             69999928999999993898399998
Q 001490          865 VTGLVFSDALNILVSSGGDAQIFVWD  890 (1068)
Q Consensus       865 V~~i~~spdg~~l~s~s~dg~i~iwd  890 (1068)
                      ...+++.+++..+++....+.|++++
T Consensus       159 ~~~i~~d~~g~i~v~d~~~~~V~~~d  184 (279)
T d1q7fa_         159 PNGVVVNDKQEIFISDNRAHCVKVFN  184 (279)
T ss_dssp             EEEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred             CCEEEECCCEEEEEEECCCCCEEEEE
T ss_conf             62432012001786201355100230

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.11  E-value=2.6e-07  Score=59.97  Aligned_cols=241  Identities=11%  Similarity=0.052  Sum_probs=124.1

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             95698971898759999828674799956898611342013431342342125433149986669999999999889995
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~  391 (1068)
                      ....++|.++|+ |.++-...+.|..|+..++.....                   ..........+++++||+++++..
T Consensus        41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CCEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEE-------------------EECCCCCEEEEEECCCCCEEEEEC
T ss_conf             747078999999-999977999999998999959999-------------------948998703899999999999956


Q ss_pred             C----CCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEE
Q ss_conf             8----968999983689764210897352355879997189991799999289939999789996246952689767998
Q 001490          392 S----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  467 (1068)
Q Consensus       392 ~----dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i  467 (1068)
                      .    .+.+...+..++.... ...-..-......+++.++|+  +.++......          .     ...+.+..+
T Consensus       101 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~----------~-----~~~g~v~~~  162 (319)
T d2dg1a1         101 GDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYS----------T-----NPLGGVYYV  162 (319)
T ss_dssp             TTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBT----------T-----BCCEEEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEE-ECCCCCCCCCCCCEEEEECCC--EEECCCCCCC----------C-----CCCCEEEEE
T ss_conf             897311049987389963644-426777555875226773065--3200135400----------2-----574215788


Q ss_pred             EEEECCCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC-EEEEE
Q ss_conf             63101893199999858919999588998168724899718999981499889999608889404999947887-05568
Q 001490          468 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT  546 (1068)
Q Consensus       468 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~  546 (1068)
                          .+++.         .+...           ...-...+.++|++|++.|+.+..   ..+.|+.|++... .....
T Consensus       163 ----~~dg~---------~~~~~-----------~~~~~~pnGia~s~dg~~lyvad~---~~~~I~~~d~~~~g~~~~~  215 (319)
T d2dg1a1         163 ----SPDFR---------TVTPI-----------IQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDDGVTIQP  215 (319)
T ss_dssp             ----CTTSC---------CEEEE-----------EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSSSEEE
T ss_pred             ----ECCCC---------EEEEE-----------EECCCEEEEEEECCCCCEEEEECC---CCCCEEEEEECCCCCEECC
T ss_conf             ----41663---------35788-----------612330100010122212787404---6891479997699836202


Q ss_pred             E----ECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCC----CCCCCEEEEECCCCEEEEEEC
Q ss_conf             7----42334568737999913999899997899099999589807999908999----899752999159999999988
Q 001490          547 Y----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       547 ~----~~~~~~~~~i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      .    ............+++..+|+..++....+.|.+++. .++.+..+.....    ...+.+++|.+++..+++...
T Consensus       216 ~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         216 FGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECC
T ss_conf             46333312577641036417389999999848998999979-99598899688757786750466778079988999857

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.01  E-value=6.2e-07  Score=57.47  Aligned_cols=92  Identities=15%  Similarity=0.143  Sum_probs=41.7

Q ss_pred             EECCC--CCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-C
Q ss_conf             97189--87599998286747999568986113420134313423421254331499866699999999998899958-9
Q 001490          317 DFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-K  393 (1068)
Q Consensus       317 ~~spd--g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-d  393 (1068)
                      ..|||  |++++.+..  +.|.+.|+.+++...                    +..+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC--DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEET--TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             CCCCCCCCCEEEEEEC--CCEEEEECCCCCEEE--------------------EECCCCCCCCEEECCCCCEEEEEEEEC
T ss_conf             2588879999999909--968999899998799--------------------766998526779878999899998628


Q ss_pred             -----CEEEEEECCCCCCCCCEE---EECCCCCCEEEEEECCCCC
Q ss_conf             -----689999836897642108---9735235587999718999
Q 001490          394 -----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCK  430 (1068)
Q Consensus       394 -----g~i~iwd~~~~~~~~~~~---~~~~h~~~V~~i~~s~d~~  430 (1068)
                           ..|.+++..+++..+...   .............|+||++
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~  107 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN  107 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred             CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             987722899998259952886416887547644434310279887

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.78  E-value=1.1e-06  Score=55.79  Aligned_cols=14  Identities=21%  Similarity=0.430  Sum_probs=5.3

Q ss_pred             CCCEEEEEECCCCC
Q ss_conf             35587999718999
Q 001490          417 VGNVNDLAFSAPCK  430 (1068)
Q Consensus       417 ~~~V~~i~~s~d~~  430 (1068)
                      .+.+...+|||||+
T Consensus        40 ~~~~~~p~~SPDG~   53 (281)
T d1k32a2          40 LGVINNARFFPDGR   53 (281)
T ss_dssp             SSEEEEEEECTTSS
T ss_pred             CCCCCCEEECCCCC
T ss_conf             98526779878999

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.73  E-value=5.7e-06  Score=51.06  Aligned_cols=228  Identities=9%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             EEEEEECCCCEEEEEE-CCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECC----CEEEEEECCCCEEEE
Q ss_conf             0999824999999994-99199999467535777558999869999807999899999789----809999948850356
Q 001490          782 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVIS  856 (1068)
Q Consensus       782 ~~i~~s~dg~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~i~iwd~~~~~~~~  856 (1068)
                      ..++|.++|++.++-. .+.|..|+..+.+....+.........+++++ +|+++++...+    +.+...+........
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~  121 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQD  121 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             EECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECC-CCCEEEEECCCCCCCEEEEEECCCCCEEEE
T ss_conf             7078999999999977999999998999959999948998703899999-999999956897311049987389963644


Q ss_pred             EECC--CCCCEEEEEECCCCCEEEEEECC------CCEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCEEE
Q ss_conf             5014--55586999992899999999389------839999879982453333314798656899825999920899999
Q 001490          857 KLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  928 (1068)
Q Consensus       857 ~~~~--h~~~V~~i~~spdg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~  928 (1068)
                      ....  -......+++.++|++.++....      +.+..++.+......  ......       ....++|+||++.|.
T Consensus       122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~~-------~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNIS-------VANGIALSTDEKVLW  192 (319)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEES-------SEEEEEECTTSSEEE
T ss_pred             ECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCEEEE--EEECCC-------EEEEEEECCCCCEEE
T ss_conf             42677755587522677306532001354002574215788416633578--861233-------010001012221278


Q ss_pred             E--EECCEEEEEECCCC-EEEE---E---ECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCC
Q ss_conf             9--95790999987874-0332---3---013777688999995289999999899929999958990898962332238
Q 001490          929 L--VHETHLAIYEAEEL-TCLK---Q---WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR  999 (1068)
Q Consensus       929 ~--~~d~~i~iwd~~~~-~~~~---~---~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~  999 (1068)
                      +  ...+.|..|++... ....   .   ...........+++..+|.+.++....+.|.+++- .|+.+.++......+
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             EECCCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCC
T ss_conf             7404689147999769983620246333312577641036417389999999848998999979-995988996887577


Q ss_pred             CCCCCCCCCCEEEEECCCCCCEEEEE
Q ss_conf             98766763416999889999889999
Q 001490         1000 PTTSCLHVYPHAIAAHPLKPTQFAVG 1025 (1068)
Q Consensus      1000 ~~~~~~~~~~~~~~~~p~~~~~l~~~ 1025 (1068)
                          .....+.+++|.|. ...+++.
T Consensus       272 ----~~~~~~~~~~~~~~-~~~~~~t  292 (319)
T d2dg1a1         272 ----GHMLRSTHPQFIPG-TNQLIIC  292 (319)
T ss_dssp             ----TCSCBCCEEEECTT-SCEEEEE
T ss_pred             ----CCCCEEEEEEEECC-CCEEEEE
T ss_conf             ----86750466778079-9889998

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.32  E-value=6.8e-05  Score=43.93  Aligned_cols=36  Identities=8%  Similarity=0.028  Sum_probs=12.6

Q ss_pred             EEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEE
Q ss_conf             3799991399989999789909999958980799990
Q 001490          557 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  593 (1068)
Q Consensus       557 i~~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  593 (1068)
                      ...+++..+++..++.-..+.|..|+. .++.+..+.
T Consensus       201 pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~  236 (295)
T d2ghsa1         201 MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  236 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             CCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEEC
T ss_conf             632678699998953207884688569-992866863

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.26  E-value=8.9e-05  Score=43.12  Aligned_cols=26  Identities=4%  Similarity=0.161  Sum_probs=9.4

Q ss_pred             EEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf             89999952899999998999299999
Q 001490          957 ISQATFSCDCRMVFTSFVDGTLSIHE  982 (1068)
Q Consensus       957 i~~l~fs~dg~~l~t~~~dg~i~vwd  982 (1068)
                      ...+++..+|.+.++.-..+.|..|+
T Consensus       201 pdG~~vD~~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         201 MDGSVCDAEGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred             CCCEEECCCCCEEEEEECCCCEEEEC
T ss_conf             63267869999895320788468856

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=0.00015  Score=41.53  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=56.3

Q ss_pred             CEEEEEEECCCCEEEEEE--CCEEEEEECCCCEEE-----------EEECCCCCCEEEEEEECCCCCEEEEEECCCEEEE
Q ss_conf             830999824999999994--991999994675357-----------7755899986999980799989999978980999
Q 001490          780 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTI-----------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  846 (1068)
Q Consensus       780 ~v~~i~~s~dg~~l~~~~--dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~i  846 (1068)
                      ....+.++|||+++++++  +.++.++|++.....           ..-....-.....+|+. .|....+..-|..|.-
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~k  354 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVK  354 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred             CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC-CCEEEEEEECCCEEEE
T ss_conf             877338899997899938858957999822535665046884521796113576766203389-8429998612316999


Q ss_pred             EECCCC----------EEEEEECCCCCCEEEE------EECCCCCEEEEEE
Q ss_conf             994885----------0356501455586999------9928999999993
Q 001490          847 YNARSS----------EVISKLEGHSKRVTGL------VFSDALNILVSSG  881 (1068)
Q Consensus       847 wd~~~~----------~~~~~~~~h~~~V~~i------~~spdg~~l~s~s  881 (1068)
                      |++...          ..+.++.-|-. +-.+      ...|||++|++..
T Consensus       355 w~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         355 WNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EECCHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             734405566446667731135433457-88774576786788887899803

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.07  E-value=0.00022  Score=40.58  Aligned_cols=80  Identities=16%  Similarity=0.155  Sum_probs=48.3

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCE-EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE-EEEEECCCCC-
Q ss_conf             919999946753577755899986-9999807999899999789809999948850356501455586-9999928999-
Q 001490          799 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-  875 (1068)
Q Consensus       799 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V-~~i~~spdg~-  875 (1068)
                      |.+.-||+.+++.+.+........ ..++.   .+.++++|+.||.++.+|..+|+.+..+.-..+.. .-+.|..||+ 
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCEEEECCCCCCEEEEECCCCCCCCCEEEE---CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf             617875787786670516889887760798---69989997799919999999886857998989945167799989999


Q ss_pred             EEEEEE
Q ss_conf             999993
Q 001490          876 ILVSSG  881 (1068)
Q Consensus       876 ~l~s~s  881 (1068)
                      +++..+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             999993

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.02  E-value=0.00028  Score=39.87  Aligned_cols=29  Identities=10%  Similarity=0.173  Sum_probs=15.4

Q ss_pred             EEEEECCCCCEEEEEECC-CEEEEEECCCC
Q ss_conf             999999999988999589-68999983689
Q 001490          376 NRVVWSPDGSLLGVAYSK-HIVQLYAYHGG  404 (1068)
Q Consensus       376 ~~i~~spdg~~las~~~d-g~i~iwd~~~~  404 (1068)
                      ...++.+||++++.|+.+ ..+.+||..+.
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEEECCCCEEEEECCCCCCEEEECCCCC
T ss_conf             689994688689863688862167567557

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.96  E-value=0.00034  Score=39.22  Aligned_cols=55  Identities=11%  Similarity=0.156  Sum_probs=27.7

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf             80999994885035650145558699999289999999938983999987998245
Q 001490          842 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  897 (1068)
Q Consensus       842 g~i~iwd~~~~~~~~~~~~h~~~V~~i~~spdg~~l~s~s~dg~i~iwd~~~~~~~  897 (1068)
                      |.+.-||+.+++.+.+.+.. .+...=..+-.+.+++.++.|+.++.+|..+|+..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEECCCCCCEEEEECCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEE
T ss_conf             61787578778667051688-98877607986998999779991999999988685

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.82  E-value=0.0006  Score=37.60  Aligned_cols=81  Identities=11%  Similarity=0.006  Sum_probs=43.9

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC-CEEEEEECCCCC-E
Q ss_conf             91999994675357775589998699998079998999997898099999488503565014555-869999928999-9
Q 001490          799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALN-I  876 (1068)
Q Consensus       799 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~i~~spdg~-~  876 (1068)
                      |.+.-+|+.+++.+.+..............  .+.++++|+.||.++.+|.++|+.+.++.-... .-.-+.|..||+ |
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCEEEECCCCCCEEEECCCCCCCCCCEEEE--CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEEE
T ss_conf             617885367784642767899987560596--699799977899699999999868789989999651564898899999


Q ss_pred             EEEEE
Q ss_conf             99993
Q 001490          877 LVSSG  881 (1068)
Q Consensus       877 l~s~s  881 (1068)
                      +++..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             99990

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.80  E-value=0.00065  Score=37.41  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE-EEEEECCCCC-E
Q ss_conf             9199999467535777558999869999807999899999789809999948850356501455586-9999928999-9
Q 001490          799 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-I  876 (1068)
Q Consensus       799 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~V-~~i~~spdg~-~  876 (1068)
                      |.+.-+|+.+++.+.......... .-.++- .+.++++|+.||.++.+|..+|+.+..++-..... .-+.+..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~-gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWN-GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCC-CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCEEEEECCCCEEEEECCCCCCCC-CCEEEE-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf             646887077883731025788887-740598-799899977898199999999858279989999551677999899999


Q ss_pred             EEEEEC
Q ss_conf             999938
Q 001490          877 LVSSGG  882 (1068)
Q Consensus       877 l~s~s~  882 (1068)
                      +++.+.
T Consensus       516 v~v~aG  521 (560)
T d1kv9a2         516 VAIMAG  521 (560)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
T ss_conf             999917

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.80  E-value=0.00065  Score=37.40  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=38.0

Q ss_pred             CCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCC-CEEEEEECCCCCCEEEEEEE------CCCCEEEEECCCCCEEEE
Q ss_conf             99889995896899998368976421089735235-58799971899917999992------899399997899962469
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG-NVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       384 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~V~~i~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~  456 (1068)
                      +.++..++.|+.+.-.|.++|+.+.....-..+.. .++.--..-+++   ++.+.      ..|.|+-+|+.+|+.+.+
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CEEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEE
T ss_conf             629999807987685436568410231014655564224588177775---89930234443357328988788857788


Q ss_pred             EC
Q ss_conf             52
Q 001490          457 FE  458 (1068)
Q Consensus       457 ~~  458 (1068)
                      +.
T Consensus       198 ~~  199 (596)
T d1w6sa_         198 AY  199 (596)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             65

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.64  E-value=0.0011  Score=35.81  Aligned_cols=99  Identities=10%  Similarity=0.028  Sum_probs=54.1

Q ss_pred             CCEEEEECCCCCEEEEEECCCC----CEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEE
Q ss_conf             9569897189875999982867----479995689861134201343134234212543314998666999999999988
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  387 (1068)
Q Consensus       312 ~V~~i~~spdg~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~l  387 (1068)
                      .+..+++|||+++++.+-+.+|    .+++.|+.+++.+...                  +.  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~------------------i~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------LE--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------EE--EECSCCEEECTTSSEE
T ss_pred             EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCC------------------CC--CCCCCCEEECCCCCEE
T ss_conf             334258537898799995566672104677416764031442------------------22--4323641785799899


Q ss_pred             EEEECC----------------CEEEEEECCCCCCCCCEEEECCCC--CCEEEEEECCCCCC
Q ss_conf             999589----------------689999836897642108973523--55879997189991
Q 001490          388 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQ  431 (1068)
Q Consensus       388 as~~~d----------------g~i~iwd~~~~~~~~~~~~~~~h~--~~V~~i~~s~d~~~  431 (1068)
                      .....+                ..|..+.+.+...-. ...+....  ..+..+..+.++++
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~  246 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRY  246 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCE
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCEEEEEECCCCCCE
T ss_conf             9997626667654433345786338999889886531-002232357725775302687624

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.52  E-value=0.0016  Score=34.79  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             EEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             99999289939999789996246952
Q 001490          433 SVITCGDDKTIKVWDAVTGSRTYSFE  458 (1068)
Q Consensus       433 ~l~s~~~d~~i~iwd~~~~~~~~~~~  458 (1068)
                      +++.++.|+.+.-.|..+|+.+..+.
T Consensus       123 ~v~~~t~dg~l~Alda~tG~~~w~~~  148 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETGETVWKVE  148 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCEEEECCCCCCEECCCC
T ss_conf             99998079876854365684102310

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.42  E-value=0.0022  Score=33.92  Aligned_cols=29  Identities=17%  Similarity=0.182  Sum_probs=14.4

Q ss_pred             CCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf             89999999899929999958990898962
Q 001490          965 DCRMVFTSFVDGTLSIHEASNLEVQCRIL  993 (1068)
Q Consensus       965 dg~~l~t~~~dg~i~vwd~~~~~~~~~~~  993 (1068)
                      .|.++++++.||.++.+|..+|+.+.++.
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEECCCCCEEEEECCCCCEEEEEE
T ss_conf             79989997789819999999985827998

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.29  E-value=0.003  Score=32.94  Aligned_cols=38  Identities=11%  Similarity=0.016  Sum_probs=16.3

Q ss_pred             EEEEECCCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEEC
Q ss_conf             99999589807999908999899752999159999999988
Q 001490          578 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  618 (1068)
Q Consensus       578 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  618 (1068)
                      +..+|..+.+....+...+.   ...+.++++|+++++.+.
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEES
T ss_pred             EEEEECCCCEEEEEEEECCC---HHCCCCCCCCCEEEEEEC
T ss_conf             99996677669899640897---201531899998999713

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0031  Score=32.84  Aligned_cols=17  Identities=6%  Similarity=-0.165  Sum_probs=6.9

Q ss_pred             CEEEEEECCCCCEEEEE
Q ss_conf             66999999999988999
Q 001490          374 SVNRVVWSPDGSLLGVA  390 (1068)
Q Consensus       374 ~V~~i~~spdg~~las~  390 (1068)
                      .+.+++|.+..++|...
T Consensus        31 ~~~~id~d~~~~~lYw~   47 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWS   47 (266)
T ss_dssp             SEEEEEEETTTTEEEEE
T ss_pred             CEEEEEEEECCCEEEEE
T ss_conf             55999998089999999

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.26  E-value=0.0032  Score=32.79  Aligned_cols=54  Identities=15%  Similarity=0.253  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECC-CCEEEEECCCC
Q ss_conf             999983689764210897352355879997189991799999289-93999978999
Q 001490          396 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-KTIKVWDAVTG  451 (1068)
Q Consensus       396 i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d-~~i~iwd~~~~  451 (1068)
                      +.+||..++.-.........+.......++.++++  +++.|+.+ ..+.+||..+.
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~--i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ--IVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC--EEEECSSSTTCEEEEEGGGT
T ss_pred             EEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCC--EEEEECCCCCCEEEECCCCC
T ss_conf             99998888968666778987445256899946886--89863688862167567557

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.0046  Score=31.74  Aligned_cols=259  Identities=13%  Similarity=0.059  Sum_probs=0.0

Q ss_pred             CCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEE-ECCCEEEEEE
Q ss_conf             875999982867479995689861134201343134234212543314998666999999999988999-5896899998
Q 001490          322 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYA  400 (1068)
Q Consensus       322 g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~-~~dg~i~iwd  400 (1068)
                      |.+|+.+..  +.|+-.+++.....              .......+..+...+..++|.+..+.+... ..++.|...+
T Consensus         1 ~~fLl~s~~--~~I~~~~ld~~~~~--------------~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~   64 (263)
T d1npea_           1 GTHLLFAQT--GKIERLPLERNTMK--------------KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS   64 (263)
T ss_dssp             CEEEEEEEE--EEEEEEEESSSCBC--------------GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEECC--CEEEEEECCCCCCC--------------CCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf             989999489--82999978886655--------------44531001268775799999858999999989999199997


Q ss_pred             CCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEEE
Q ss_conf             36897642108973523558799971899917999992899399997899962469526897679986310189319999
Q 001490          401 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS  480 (1068)
Q Consensus       401 ~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s  480 (1068)
                      +.++....   .+......+..+++..-+.. +.++-...+.|.+.++........+......+..+++.|. .+.++.+
T Consensus        65 l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t  139 (263)
T d1npea_          65 LHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV-RGNLYWT  139 (263)
T ss_dssp             SSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT-TTEEEEE
T ss_pred             CCCCCCEE---EEEECCCCCCEEEEECCCCE-EEEECCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECC-CCCEEEE
T ss_conf             66587289---88701264207999636886-8884267897998805881677771256668727999256-6927995


Q ss_pred             EECCCC--EEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCCEE
Q ss_conf             985891--999958899816872489971899998149988999960888940499994788705568742334568737
Q 001490          481 ISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS  558 (1068)
Q Consensus       481 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~i~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~i~  558 (1068)
                      -...+.  |..-+++...........-.....+++.+.++.|..+..   +.+.|...+.........+.+..    ...
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~~~~~g~~~~~v~~~~~----~P~  212 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPGRRKVLEGLQ----YPF  212 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEEEEEEEECCC----SEE
T ss_pred             ECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEC---CCCEEEEEECCCCCEEEEECCCC----CCE
T ss_conf             34899768999667899723655303555530799504758999928---99999999999997699988999----868


Q ss_pred             EEEEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEECCC
Q ss_conf             9999139998999978990999995898079999089998997529991599
Q 001490          559 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  610 (1068)
Q Consensus       559 ~i~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  610 (1068)
                      .+++. ++....+-...+.|...|..+++.+..+..... .....+++.++.
T Consensus       213 ~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~~~~  262 (263)
T d1npea_         213 AVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQ  262 (263)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSC
T ss_pred             EEEEE-CCEEEEEECCCCEEEEEECCCCCCCEEECCCCC-CCCCEEEEECCC
T ss_conf             99999-999999999999799998989951069898889-985658983898

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.96  E-value=0.0062  Score=30.87  Aligned_cols=72  Identities=13%  Similarity=0.066  Sum_probs=34.7

Q ss_pred             CCEEEEEECCCEEEEEECCCCCCCCCEEEECCCC-CCEEEEEECCCCCCEEEEEEE------CCCCEEEEECCCCCEEEE
Q ss_conf             9988999589689999836897642108973523-558799971899917999992------899399997899962469
Q 001490          384 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYS  456 (1068)
Q Consensus       384 g~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~V~~i~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~  456 (1068)
                      +..+..++.++.+.-.|.++|+..-.......+. ..++.--...++.   ++.+.      .++.|+-+|+.+|+.+.+
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEECCEEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEE
T ss_conf             886999917975782100211220234445544324145367575885---88850234423467479998889858899


Q ss_pred             EC
Q ss_conf             52
Q 001490          457 FE  458 (1068)
Q Consensus       457 ~~  458 (1068)
                      +.
T Consensus       192 ~~  193 (571)
T d2ad6a1         192 AF  193 (571)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             70

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.80  E-value=0.0083  Score=30.03  Aligned_cols=61  Identities=11%  Similarity=0.203  Sum_probs=25.4

Q ss_pred             ECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECC
Q ss_conf             9999998899958968999983689764210897352355879997189991799999289939999789
Q 001490          380 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  449 (1068)
Q Consensus       380 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~  449 (1068)
                      .+|..+.||.-+ ..++.++|+++.+.++   .+ ....+|..-.|..+..   |+-.+ +..|+-|+++
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klk---s~-~~~e~VvfWkWis~~~---L~lVT-~taVYHW~~~  130 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMK---AH-TMTDDVTFWKWISLNT---VALVT-DNAVYHWSME  130 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEE---EE-ECSSCCCEEEESSSSE---EEEEC-SSEEEEEESS
T ss_pred             CCCCCCEEEEEC-CCEEEEEEHHHHHHHC---EE-ECCCCCEEEEECCCCE---EEEEC-CCCEEEECCC
T ss_conf             088875799962-8868998446822111---58-7688857999447988---99991-8816997356

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.75  E-value=0.009  Score=29.80  Aligned_cols=57  Identities=12%  Similarity=0.239  Sum_probs=35.9

Q ss_pred             CCCCEEEEEECCCCCEEEEEE-CC----CEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCC
Q ss_conf             986669999999999889995-89----68999983689764210897352355879997189991
Q 001490          371 PGVSVNRVVWSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ  431 (1068)
Q Consensus       371 h~~~V~~i~~spdg~~las~~-~d----g~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~  431 (1068)
                      +.-.+..+++|||++++|.+- .+    ..+++.|+.+++.+..  .+..  .....++|++|++.
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~~--~~~~~~~W~~D~~~  184 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKG  184 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSE
T ss_pred             CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC--CCCC--CCCCCEEECCCCCE
T ss_conf             44133425853789879999556667210467741676403144--2224--32364178579989

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.46  E-value=0.014  Score=28.54  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=13.9

Q ss_pred             EEEECCCCCEEEEECCCCCCEEE
Q ss_conf             99982867479995689861134
Q 001490          326 LLVGTNVGDTGLWDVNSGQKLFI  348 (1068)
Q Consensus       326 la~g~~dg~v~iwd~~~~~~~~~  348 (1068)
                      +.+++.++.|.-.|..+|+.+-+
T Consensus        71 vy~~t~~~~v~AlDa~TG~~lW~   93 (582)
T d1flga_          71 IYVTASYSRLFALDAKTGKRLWT   93 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEE
T ss_pred             EEEECCCCEEEEEECCCCCEEEE
T ss_conf             99968999599996899986888

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.016  Score=28.08  Aligned_cols=16  Identities=13%  Similarity=0.304  Sum_probs=6.5

Q ss_pred             CEEEEECCCCCEEEEE
Q ss_conf             3999978999624695
Q 001490          442 TIKVWDAVTGSRTYSF  457 (1068)
Q Consensus       442 ~i~iwd~~~~~~~~~~  457 (1068)
                      ++.++|+++.+.++.+
T Consensus        84 ~LQiFnletK~klks~   99 (327)
T d1utca2          84 TLQIFNIEMKSKMKAH   99 (327)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEEHHHHHHHCEE
T ss_conf             6899844682211158

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.69  E-value=0.032  Score=26.14  Aligned_cols=61  Identities=13%  Similarity=0.129  Sum_probs=33.2

Q ss_pred             CEEEEEECCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEECCC
Q ss_conf             909999878740332301377768899999528999999989992999995899089896233
Q 001490          933 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST  995 (1068)
Q Consensus       933 ~~i~iwd~~~~~~~~~~~~~h~~~i~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~  995 (1068)
                      +.+.-+|+.+|+..-+...+  .+...-..+..|.++++++.||.++.+|..+|+.+.++...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CEEEEECCCCCCEEEECCCC--CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf             75999807899587326779--99745016976986999679996999999998686798899

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.27  E-value=0.34  Score=19.28  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=35.6

Q ss_pred             CCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCC
Q ss_conf             8956989718987599998286747999568986113420134313423421254331499866699999999
Q 001490          311 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  383 (1068)
Q Consensus       311 ~~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd  383 (1068)
                      +..++++|.|||+ ++++--..|.|++++..++.......+.           .......-+.....++|+|+
T Consensus        27 ~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~-----------~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVP-----------EIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-----------TCCCCTTSSCSEEEEEECTT
T ss_pred             CCCEEEEEECCCE-EEEEEECCCEEEEEECCCCCEEECCCCC-----------CCCCCCCCCCCEEEEEECCC
T ss_conf             9843899928990-9999934887999989999675613687-----------52003688874233796799

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.12  E-value=0.78  Score=16.93  Aligned_cols=121  Identities=13%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             CCEEEEECCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             95698971898759999828674799956898611342013431342342125433149986669999999999889995
Q 001490          312 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  391 (1068)
Q Consensus       312 ~V~~i~~spdg~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~  391 (1068)
                      ...-++.++... |++.|+.++ ++|-.+..-+....       .......++.. .  .-..|..++|+.|  .|++..
T Consensus        38 ~~~LLAVsn~~G-Ll~aa~~~~-l~V~~t~~l~~~~~-------~~~~~~~~~~~-~--~ip~v~~vafs~d--~l~v~~  103 (381)
T d1xipa_          38 SLQNLDISNSKS-LFVAASGSK-AVVGELQLLRDHIT-------SDSTPLTFKWE-K--EIPDVIFVCFHGD--QVLVST  103 (381)
T ss_dssp             CCBCEEEETTTT-EEEEEETTE-EEEEEHHHHHHHHH-------SSSCCCCCSEE-E--ECTTEEEEEEETT--EEEEEE
T ss_pred             CCCEEEEECCCC-EEEEECCCE-EEEEEHHHHHHHHH-------CCCCCCCCEEC-C--CCCCEEEEEEECC--EEEEEE
T ss_conf             442689957778-899988997-79999899787865-------56788862341-6--8998689986189--899995


Q ss_pred             CCCEEEEEECCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEE
Q ss_conf             896899998368976421089735235587999718999179999928993999978999624
Q 001490          392 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  454 (1068)
Q Consensus       392 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~V~~i~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  454 (1068)
                       ++.+..++...-....   ....-..++..+.++|.    .++....++.+.++++..+...
T Consensus       104 -~~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_         104 -RNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             -SSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEE
T ss_pred             -CCCEEEEEEECCCCCC---CCCCCCCCCCCEECCCC----EEEEEECCCCEEEEEECCCCCC
T ss_conf             -8978999851001454---46554556111021886----0699965897789994158644