Citrus Sinensis ID: 001500

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------

MQKICLGSQDLFYPFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA

ccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEcEEEEEEEEEcccccccEEEEccccEEEcccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEccccccccccccccccccccccccEEEEcccccEEEEEcccccccccccEEEEEEEEEccEEEEEEEEEEEccccEEEEcccEEEEEEccccccccccccccccccccccccccccEEEEcEEEEcccccccccEEEEEEEEEEcccccccccccccccccEEcEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEccccccEEEEccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHccccccEEEEEcccccccccccccccccccccccccEEEEEEEEEEEEcccccccccEEcccccccccccccEEEEEEEEEEEccccccHHcccccEEEEEEEcccccEEEEEEEccEEEcccccccEEEEEEEEEEcccccccccccccccccccccccccccccEEEEccccccccccccc

ccEEEEccccccccHHHHEEHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccEccccccEEEEEEEEccccccEEEcEEEEEEEEEcccccccEEEEccccEEEcccccEEEEEEccccccEEEEEEEEEEEEEEEEEccccccccccccccccccccccccEEEEccccccEccHHHcccHHHcccccEEEEEEEccccccccEEEEEEcccccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEcccccEEccccccccEEEEEEEEEEcccccccccccccHHHHHHHHcHEEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEHccccEEEEEEEEEEEcccccEEccccccccccccccEEEcccccEEEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEcccccccccEEEccccccccccccEEEEEEEEEEEcccccHHHHHcccccEEEEEEcccccEEEEcccccEEEEccccccEEEEEEEEEEEEcccccccccccccccccccccccccccEEEEcccccccccEccc

mqkiclgsqdlfypfsriTLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNmngkhkefggvergddeaallnpgnkalteivqddsfrefEFRQYLFACQSKLLfklnrpfevasrgypFIISFSKALAQHEDILPFCMREVWVITACLALIDATssqyndglaapdIEKEFYRLLGDLYSLCRIKFMRLAYLIghgtdierspvnsaslsmlpwpkppvwplvpadaSAEVLAKEKLILqatprvkhfgihrkplplepsvLLREANRRRaslsagnmfeifdgsgpdvslrmspsnkVQAVSMsrtnsspgfessidrpMRLAEIFVASEHALRqtisnpnllksLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSldkglfstKERQAFQSEVISLAYgemkdpvpldvsslitfsgnpgpplelcdgdpgtlsvtvwsgfpdditvDTLSLTLMATYNADEGAKALNTstatvlkpgrntitvdlppqkpgsyvlGALTghigrlrfrshsfskvgpadsddfmsyekptrpilkvfnprplVDLAAAisspllineaQWVGIIVQPidyslkgailqidtgpgltieesHFVEMEShiklsnlenchniqkdcsldinkdferlhlhdgriqlpdwasnLTSILWIPIRAinnslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERtiavhftdpfhvstriadkcsdgTLLLQVILHSQVNASLTIYDAWLDLQdgfvhtrqgdgrptsgffplvisssskaGILFSIclgkttpeaeVEAVRRDSLLNIqygisgkrtigahppvtaeatgaedaREGLIFRSALVlqrpvldptlaigflalpsdglrvgqLVSMKWRVERLKDFEeneasqrndEVLYEVNANADnwmiagrkrgyvslptkqgsrIVISILCVpllagyvrppqlglpgveeaniscnppgphlicvlpptlsssfciaa

mqkiclgsqdlfypFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQatprvkhfgihrkplplepsvllREANRRRaslsagnmfeIFDGSGPDVSLRMSPSNKVQAvsmsrtnsspgfessidrPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNAdegakalntstatvlkpgrntitvdlppqkpGSYVLGALTGHIGRLRFRSHSFSkvgpadsddfmsyEKPTrpilkvfnprPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNslargsssvtpqrqSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGisgkrtigahppVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLalpsdglrvGQLVSMKWRVERLKDfeeneasqrndeVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA

MQKICLGSQDLFYPFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMlpwpkppvwplvpADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA

***ICLGSQDLFYPFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGV******AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPL*****************************************************************LAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSF****************PTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA***********SIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDF**********EVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFC***

****CLGSQDLFYPFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSS***************YRLLGDLYSLCRIKFMRLAYL********************************************************************************LSAGNMFEIFDGSGPD***************************************************NPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKG**S*KE**AFQSEVI************LDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSH*****************KPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFV****************************FERLHLHDGRIQLPDWASNLTSILWIPIR********************VDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIG***PVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFE**EASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA

MQKICLGSQDLFYPFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDV**************************SIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLA**********QSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA

*QKICLGSQDLFYPFSRITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGS******************************SIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSH**********DDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIKLS***********CSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGK******************AREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANISCNPPGPHLICVLPPTLSSSFCIAA

iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1066	2.2.26 [Sep-21-2011]
Q556Z3		1442	Trafficking protein parti	yes	no	0.137	0.101	0.3	2e-13
Q3TLI0		1259	Trafficking protein parti	yes	no	0.166	0.140	0.287	6e-10
P48553		1259	Trafficking protein parti	yes	no	0.165	0.139	0.291	3e-08

>sp\|Q556Z3\|TPC10_DICDI Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1	Back alignment and function desciption

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 3/150 (2%)

Query: 35  FALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDD---EAAL 91
           F   +E LA ++E A L+EDAL +Y ELE+ + +  N +   +    V + +       +
Sbjct: 326 FFFIKEGLALIYERAQLYEDALMQYFELEVLFGDPNNRSQFDQITDEVLQPNSIHCNGNI 385

Query: 92  LNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQ 151
           L+   K   +++ ++    F+F+ YLFA QSKLLF L +P E A++   FI S S  + Q
Sbjct: 386 LDTSFKNYRKLIYENKISLFDFKVYLFARQSKLLFLLQKPIEAATKSISFITSMSMIIKQ 445

Query: 152 HEDILPFCMREVWVITACLALIDATSSQYN 181
           + +      +E W+ +  + LI A    ++
Sbjct: 446 YPNSFAPMFKESWIFSTSMELIKACQDSFD 475

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q3TLI0\|TPC10_MOUSE Trafficking protein particle complex subunit 10 OS=Mus musculus GN=Trappc10 PE=2 SV=2	Back alignment and function description

>sp\|P48553\|TPC10_HUMAN Trafficking protein particle complex subunit 10 OS=Homo sapiens GN=TRAPPC10 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1066
359493878		1259	PREDICTED: uncharacterized protein LOC10	0.969	0.820	0.782	0.0
302143059		1258	unnamed protein product [Vitis vinifera]	0.968	0.820	0.780	0.0
356549765		1258	PREDICTED: uncharacterized protein LOC10	0.964	0.817	0.767	0.0
356544004		1249	PREDICTED: uncharacterized protein LOC10	0.958	0.818	0.767	0.0
449464782		1249	PREDICTED: trafficking protein particle	0.963	0.822	0.756	0.0
449476735		1249	PREDICTED: trafficking protein particle	0.963	0.822	0.756	0.0
297796315		1259	hypothetical protein ARALYDRAFT_331786 [	0.966	0.818	0.732	0.0
240256444		1259	protein CLUB [Arabidopsis thaliana] gi\|3	0.966	0.818	0.724	0.0
8885587		1280	unnamed protein product [Arabidopsis tha	0.966	0.804	0.699	0.0
255569575		1043	conserved hypothetical protein [Ricinus	0.784	0.801	0.803	0.0

>gi\|359493878\|ref\|XP_002281921.2\| PREDICTED: uncharacterized protein LOC100253761 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1697 bits (4395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1045 (78%), Positives = 918/1045 (87%), Gaps = 12/1045 (1%)

Query: 34   TFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLN 93
             F + +ESLAFMFEMAHLHED+LREYDELELCYLETVN+ GK ++FGG++RGDD+AALLN
Sbjct: 215  NFFILKESLAFMFEMAHLHEDSLREYDELELCYLETVNVAGKQRDFGGIDRGDDQAALLN 274

Query: 94   PGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHE 153
            PGNK LT+IVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALA HE
Sbjct: 275  PGNKLLTQIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALALHE 334

Query: 154  DILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY 213
             +LPFCMREVWV+TACLALI+AT+S YNDG  APDIEKEFYR+ G+LYSLCR+KFMRLAY
Sbjct: 335  RMLPFCMREVWVVTACLALINATASHYNDGFVAPDIEKEFYRIQGNLYSLCRVKFMRLAY 394

Query: 214  LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIH 273
            LIG+GT+IERSPVNSASLSML WP P VWP VP DAS+ VL KEK ILQATPRVKHFGI 
Sbjct: 395  LIGYGTEIERSPVNSASLSMLSWPMPAVWPPVPPDASSMVLEKEKTILQATPRVKHFGIQ 454

Query: 274  RKPLPLEPSVLLREANRRRASLSAGNMFEIF-------DGSGPDVSLRMSPSNKVQAVSM 326
            RKPLPLEPS+LLREANRRRASLSAGNM E+F       DGS  D SLRMSPS+KV A+SM
Sbjct: 455  RKPLPLEPSILLREANRRRASLSAGNMVEMFEGRPIFVDGSDSDASLRMSPSSKVHAISM 514

Query: 327  SRTNSSP-GFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKG 385
            +RTNSSP  FESSIDRPMRLAEI+VA+EHAL+ TIS+ +L KSL SVEEFE+KYLELTKG
Sbjct: 515  TRTNSSPINFESSIDRPMRLAEIYVAAEHALQNTISDTDLWKSLLSVEEFEKKYLELTKG 574

Query: 386  AANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 445
            AA+NYH SWWKRHGVVLDGEIAAVC++HGN+D AAKSYEKVCALY+GEGWQDLLAEVLP 
Sbjct: 575  AADNYHRSWWKRHGVVLDGEIAAVCYRHGNFDLAAKSYEKVCALYAGEGWQDLLAEVLPK 634

Query: 446  LAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSL 505
            LAECQKILND+AGYL SCVRLLSLDKGLFSTKERQAFQSEV+ LA+ EMK PVPLDVSSL
Sbjct: 635  LAECQKILNDQAGYLSSCVRLLSLDKGLFSTKERQAFQSEVVRLAHSEMKHPVPLDVSSL 694

Query: 506  ITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTA 565
            ITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDIT++ LSLTL A +N DEG KAL +S A
Sbjct: 695  ITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITLEVLSLTLAAIFNVDEGVKALRSSAA 754

Query: 566  TVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTR 625
             +LKPGRNTIT+ LPPQKPGSYVLG LTG IG+LRFRSHSFSK GPADSDDFMSYEKP R
Sbjct: 755  PILKPGRNTITLALPPQKPGSYVLGVLTGQIGQLRFRSHSFSKGGPADSDDFMSYEKPAR 814

Query: 626  PILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESH 685
            PILKV  PRPLVDLAAAISS LL+NE QWVGIIV+PI+YSLKGA+L IDTGPGL IEESH
Sbjct: 815  PILKVSKPRPLVDLAAAISSALLMNEPQWVGIIVRPINYSLKGAVLYIDTGPGLKIEESH 874

Query: 686  FVEMESHIKLS----NLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWI 741
             +E+E H  +S    ++E+C   +K  S  + ++F++L L +GRI+LPDWASN+TS++W 
Sbjct: 875  PIEIERHSDVSQSATDMESCDQARKKDSSVVIEEFKQLTLQNGRIELPDWASNITSVIWF 934

Query: 742  PIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVST 801
            PI AI++ LARG+SSVTPQRQSIVDGMRTIALKL+FGV  NQ F+RT+AVHFTDPFHVST
Sbjct: 935  PISAISDKLARGTSSVTPQRQSIVDGMRTIALKLEFGVSLNQTFDRTLAVHFTDPFHVST 994

Query: 802  RIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSS 861
            R+ DKC+DGTLLLQV LHSQV A+LTIYDAWL LQDGFVHT QGDGRPTS FFPLVI+ +
Sbjct: 995  RVVDKCNDGTLLLQVTLHSQVKATLTIYDAWLVLQDGFVHTGQGDGRPTSDFFPLVIAPT 1054

Query: 862  SKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREG 921
            +KAGILF ICLG T    E +A + +S+LNI+YGI+G RTIGAH PVT E  G+E + + 
Sbjct: 1055 AKAGILFCICLGTTISGDEAKAPQPESVLNIRYGIAGNRTIGAHTPVTVEPAGSEGSTQD 1114

Query: 922  LIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEASQRNDEV 981
            LIFRSALVLQRPV+DP LA+GFL L S GLRVGQLV+MKWRVERLKDF+EN  SQ NDEV
Sbjct: 1115 LIFRSALVLQRPVMDPCLAVGFLPLTSGGLRVGQLVTMKWRVERLKDFDENAVSQNNDEV 1174

Query: 982  LYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANI 1041
            LYEVNAN++NWMIAGRKRG+VSL TKQGSRIVISILC+PL+AGYV PP+LGLP V+EANI
Sbjct: 1175 LYEVNANSENWMIAGRKRGHVSLSTKQGSRIVISILCMPLVAGYVHPPKLGLPSVDEANI 1234

Query: 1042 SCNPPGPHLICVLPPTLSSSFCIAA 1066
            SCNP GPHL+CVLPP  SSSFCI A
Sbjct: 1235 SCNPAGPHLVCVLPPVFSSSFCIPA 1259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302143059\|emb\|CBI20354.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356549765\|ref\|XP_003543261.1\| PREDICTED: uncharacterized protein LOC100787264 [Glycine max]	Back alignment and taxonomy information

>gi\|356544004\|ref\|XP_003540446.1\| PREDICTED: uncharacterized protein LOC100782619 [Glycine max]	Back alignment and taxonomy information

>gi\|449464782\|ref\|XP_004150108.1\| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449476735\|ref\|XP_004154819.1\| PREDICTED: trafficking protein particle complex subunit 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297796315\|ref\|XP_002866042.1\| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata] gi\|297311877\|gb\|EFH42301.1\| hypothetical protein ARALYDRAFT_331786 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|240256444\|ref\|NP_200255.5\| protein CLUB [Arabidopsis thaliana] gi\|332009113\|gb\|AED96496.1\| protein CLUB [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8885587\|dbj\|BAA97517.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255569575\|ref\|XP_002525753.1\| conserved hypothetical protein [Ricinus communis] gi\|223534903\|gb\|EEF36589.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1066
TAIR\|locus:2147324		1259	CLUB "AT5G54440" [Arabidopsis	0.965	0.817	0.715	0.0
MGI\|MGI:1336209		1259	Trappc10 "trafficking protein	0.177	0.150	0.302	2.4e-26
DICTYBASE\|DDB_G0273719		1442	trappc10-2 "trafficking protei	0.137	0.101	0.3	3.8e-24
DICTYBASE\|DDB_G0273209		1442	trappc10-1 "trafficking protei	0.137	0.101	0.3	3.8e-24
UNIPROTKB\|P48553		1259	TRAPPC10 "Trafficking protein	0.177	0.150	0.297	1.2e-23
ASPGD\|ASPL0000058427		1433	AN1038 [Emericella nidulans (t	0.079	0.059	0.309	9.3e-13
FB\|FBgn0038303		1145	SIDL "Shal Interactor of Di-Le	0.103	0.096	0.293	5.8e-06

TAIR\|locus:2147324 CLUB "AT5G54440" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3851 (1360.7 bits), Expect = 0., P = 0.
 Identities = 746/1042 (71%), Positives = 867/1042 (83%)

Query:    35 FALFQESLAFMFEMAHLHEDALREYDELELCYLETVNMNGKHKEFGGVERGDDEAALLNP 94
             F + +ESLAF+FEMAHLHEDALREYDELELCYLETVNM GK ++FGG +  DD+A LL P
Sbjct:   216 FFILKESLAFIFEMAHLHEDALREYDELELCYLETVNMPGKQRDFGGFDGEDDQAVLLKP 275

Query:    95 GNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHED 154
             G+K LT+IVQDDSFREFEFRQYLFACQS+LLFKLNRPFEVASRGY F+ISF+KAL  HE 
Sbjct:   276 GSKPLTQIVQDDSFREFEFRQYLFACQSRLLFKLNRPFEVASRGYSFVISFAKALTLHES 335

Query:   155 ILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYL 214
             +LPFCMREVWVITACLALI+AT+S ++DG+ APDIEKEF+RL GDLYSL R+KFMRL YL
Sbjct:   336 VLPFCMREVWVITACLALIEATASHHHDGVVAPDIEKEFFRLQGDLYSLSRVKFMRLGYL 395

Query:   215 IGHGTDIERSPVNSASLSMXXXXXXXXXXXXXADASAEVLAKEKLILQATPRVKHFGIHR 274
             IG+GTDIE+SP+NSA LSM              DAS+EVL KEK ILQAT R KHFGI R
Sbjct:   396 IGYGTDIEKSPLNSACLSMLPWPKPAVWPSLPQDASSEVLEKEKTILQATSRTKHFGIQR 455

Query:   275 KPLPLEPSVLLREANRRRASLSAGNMFEIFDG-------SGPDVSLRMSPSNKVQAVSMS 327
             K LPLEPSVLLR ANRRRASLS GN+ E+FDG       SG + S R   S KVQA  MS
Sbjct:   456 KALPLEPSVLLRVANRRRASLSTGNIPEMFDGRPSFTEGSGLEASPRTPSSLKVQAPPMS 515

Query:   328 RTNSSPG-FESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGA 386
             RTNSSPG FES +DRPMRLAEIFVA+EHALR TIS+ +LLK+LSS+++FE KYL LTKGA
Sbjct:   516 RTNSSPGNFESPLDRPMRLAEIFVAAEHALRLTISDHDLLKTLSSIQDFENKYLNLTKGA 575

Query:   387 ANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNL 446
             A NYH SWWKRHGVVLDGEIAAVCFKHG YD AA SYEKVCALY+GEGWQDLLAEVLPNL
Sbjct:   576 AENYHRSWWKRHGVVLDGEIAAVCFKHGKYDLAANSYEKVCALYAGEGWQDLLAEVLPNL 635

Query:   447 AECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVPLDVSSLI 506
             A+CQKIL+D+AGY+ SCVRLLSLDKGLFS+KERQAFQSEV++LA+ EMK+PVPLDVSSLI
Sbjct:   636 AQCQKILDDQAGYMSSCVRLLSLDKGLFSSKERQAFQSEVVTLAHSEMKNPVPLDVSSLI 695

Query:   507 TFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTAT 566
             TFSGN GPPL+LCDGDPG LSVTVWSGFPDDIT+D+LSLTL+AT N DEG +AL +S AT
Sbjct:   696 TFSGNTGPPLQLCDGDPGNLSVTVWSGFPDDITLDSLSLTLVATNNTDEGGQALKSSAAT 755

Query:   567 VLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRP 626
             VL PGRNTIT  LPPQKPGSYVLG +TG IGRLRFRSHSFSK GPADSDDFMSYEKPTRP
Sbjct:   756 VLNPGRNTITFALPPQKPGSYVLGVVTGQIGRLRFRSHSFSKGGPADSDDFMSYEKPTRP 815

Query:   627 ILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPGLTIEESHF 686
             ILKV  PR LVDLAAA+SS LLINEAQW+GIIV+PI YSLKGAIL IDTGPGL IE+S+ 
Sbjct:   816 ILKVSKPRALVDLAAAVSSALLINEAQWIGIIVRPIAYSLKGAILHIDTGPGLKIEDSYG 875

Query:   687 VEMESHIKL---SNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPI 743
             +EME ++     +         +D  +   +D E L+L DG+I   DWASN++SILW+P+
Sbjct:   876 IEMERYMDADCDTGASKAEVFVEDSPVSSKRDSEVLNLCDGKIVFSDWASNVSSILWVPV 935

Query:   744 RAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRI 803
             RA++  LARGSSSVTP +Q I++GMRT+ALKL+FGV HNQIFERTIA HFTDPF V+TR+
Sbjct:   936 RALSEKLARGSSSVTPLKQDILEGMRTVALKLEFGVHHNQIFERTIAAHFTDPFDVTTRV 995

Query:   804 ADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSK 863
             A+KC+DGTL+LQV+LHS V A+L + D WLDLQDGF+H  Q DGRPTS FFPLV+S  S+
Sbjct:   996 ANKCNDGTLVLQVMLHSLVKANLIVLDVWLDLQDGFIHG-QNDGRPTSTFFPLVVSPGSR 1054

Query:   864 AGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIGAHPPVTAEATGAEDAREGLI 923
             A ++FSICL K+      +    +S+LNI+YGI G R  GAH PV A+ +  +     L+
Sbjct:  1055 AAVVFSICLDKSMSSEGKDLQLPESILNIKYGIHGDRAAGAHRPVDADHSETDTEGRDLV 1114

Query:   924 FRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENEA-SQRNDEVL 982
             F+SA+VLQRPVLDP L +GFL LPSDGLRVG+L++M+WRVERLK+ +E+EA  Q++DEVL
Sbjct:  1115 FKSAIVLQRPVLDPCLTVGFLPLPSDGLRVGKLITMQWRVERLKELKESEAVEQQHDEVL 1174

Query:   983 YEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEANIS 1042
             YEVNAN++NWMIAGRKRG+VSL  +QGSR+VISILCVPL+AGYVRPPQLGLP VEEAN+S
Sbjct:  1175 YEVNANSENWMIAGRKRGHVSLSEEQGSRVVISILCVPLVAGYVRPPQLGLPNVEEANVS 1234

Query:  1043 CNPPGPHLICVLPPTLSSSFCI 1064
              NP GPHL+CVLPP LSSS+C+
Sbjct:  1235 SNPSGPHLVCVLPPLLSSSYCL 1256

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0000910 "cytokinesis" evidence=IMP

GO:0000919 "cell plate assembly" evidence=IMP

MGI\|MGI:1336209 Trappc10 "trafficking protein particle complex 10" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0273719 trappc10-2 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0273209 trappc10-1 "trafficking protein particle complex subunit 10" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|P48553 TRAPPC10 "Trafficking protein particle complex subunit 10" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000058427 AN1038 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

FB\|FBgn0038303 SIDL "Shal Interactor of Di-Leucine Motif" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1066
pfam12584		135	pfam12584, TRAPPC10, Trafficking protein particle	6e-33
pfam11817		215	pfam11817, Foie-gras_1, Foie gras liver health fam	6e-04

>gnl\|CDD\|221652 pfam12584, TRAPPC10, Trafficking protein particle complex subunit 10, TRAPPC10	Back alignment and domain information

 Score =  123 bits (312), Expect = 6e-33
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 18/139 (12%)

Query: 929  VLQRPVLDPTLAIGFLALPSDGL---RVGQLVSMKWRVERLKDFEENEASQRNDEVLYEV 985
             +  PVLD   A+GFL L    L   RVG+ +    R+   + +     S  + E++YE+
Sbjct: 1    PVDVPVLDIVHAVGFLPLSPSCLTLCRVGEPIDANLRIRTSRRWSSE--SNPSTELMYEI 58

Query: 986  NANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPGVEEA------ 1039
             AN DNW+++GRKRG+ S+  K+GSR  IS+  +PL+AG++  P++ +   +        
Sbjct: 59   LANPDNWLVSGRKRGHFSV--KEGSRHTISLTLIPLVAGHLPLPKVEIKSYDTGAMPRSE 116

Query: 1040 -----NISCNPPGPHLICV 1053
                  +     G  ++ +
Sbjct: 117  RPPSCEVDNRNAGETVLVL 135

This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1. Length = 135

>gnl\|CDD\|221243 pfam11817, Foie-gras_1, Foie gras liver health family 1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1066
KOG1931		1156	consensus Putative transmembrane protein [General	100.0
KOG4386		809	consensus Uncharacterized conserved protein [Funct	100.0
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	99.95
PF12584		147	TRAPPC10: Trafficking protein particle complex sub	99.65
PF11817		247	Foie-gras_1: Foie gras liver health family 1; Inte	99.4
PF12742		57	Gryzun-like: Gryzun, putative Golgi trafficking	98.47
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	97.57
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	97.23
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.14
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.66
KOG1931		1156	consensus Putative transmembrane protein [General	92.9
PRK10803		263	tol-pal system protein YbgF; Provisional	92.6
KOG2625		348	consensus Uncharacterized conserved protein [Funct	91.17
KOG1586		288	consensus Protein required for fusion of vesicles	89.53
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	89.03
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	88.36
PF12688		120	TPR_5: Tetratrico peptide repeat	88.27
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	87.31
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	87.22
PF13176		36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.02
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	85.7
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	85.7
COG1729		262	Uncharacterized protein conserved in bacteria [Fun	84.08
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	83.92
PF13174		33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.26
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	81.77
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	81.6
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	80.91
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.21

>KOG1931 consensus Putative transmembrane protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=5e-97  Score=876.04  Aligned_cols=856  Identities=27%  Similarity=0.331  Sum_probs=644.1

Q ss_pred             eeeeeehhccCCCchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhc-C--CCcccCCCCCCCCch---hhh
Q 001500           18 ITLVTYYILEVSLLVLTFALFQESLAFMFEMAHLHEDALREYDELELCYLETVNM-N--GKHKEFGGVERGDDE---AAL   91 (1066)
Q Consensus        18 ~~~~~~~~~~~~w~f~~~FllkE~LA~lfe~~~L~eDAL~qYdELea~f~~~vn~-~--~~~~~~g~~~~~~d~---~~l   91 (1066)
                      ||=+..+|+.||||||+||++||+||++|||++||||||.|||||+++|.+.++. +  ..+.|||++..|||.   +.+
T Consensus       197 iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qydel~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~l  276 (1156)
T KOG1931|consen  197 IRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQYDELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSL  276 (1156)
T ss_pred             HHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCCccccccccccCCchhhhcCceE
Confidence            4555799999999999999999999999999999999999999999999999944 3  348999999999985   677


Q ss_pred             cCCCChhHHHHhhcCCCChhHHHHHHHHHHHHHHHHhCChHHHHhhHHHHHHHHHHHHHHhcccCcccchhhHHHHHHHH
Q 001500           92 LNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFEVASRGYPFIISFSKALAQHEDILPFCMREVWVITACLA  171 (1066)
Q Consensus        92 l~~~~~~~r~lI~~~~islFd~r~YLF~RQ~~LL~~l~~~~ev~~ra~~fI~~~~~~L~~~~~~~~~~~~e~W~~~~~~~  171 (1066)
                      +.+++++.++.|+++..++|+||.|||+||+.||++++||+|||+|++.|+.+|++++..++.++|.++++||.|.+|++
T Consensus       277 l~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~eva~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~  356 (1156)
T KOG1931|consen  277 LIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFEVASRAYELLFSFLQELSLLESSVPLGALKCWEITAALE  356 (1156)
T ss_pred             EecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhccCCCCCcchHHHHHHHhcchHHHHHHHHHHHHHHhcCCccccCCCCCcccccCCCCCCCCCCCCCCCCccH
Q 001500          172 LIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAYLIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASA  251 (1066)
Q Consensus       172 vl~~c~~~~~~~~~~~~~~~~~~~~~~eL~~~aR~kl~~Lg~~~G~~~~~~~~p~~~~~~~~lp~~~~~~~~~~~~~~~s  251 (1066)
                      +++.|.   ..+...+++.+.+.+++|+||.+||+||.++|++||+                +|...|-        -.+
T Consensus       357 ~~e~~~---~~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~~~~l----------------i~d~~p~--------~~s  409 (1156)
T KOG1931|consen  357 YLEFTE---VSGPLLPNIKTELFMLCADIWSYARMKLYGMALLCGL----------------IPDSDPN--------YKS  409 (1156)
T ss_pred             HHHHhh---ccccccccccchHHHHhhhHHHHHHHHHHHHHHHhcc----------------CCCCCCC--------ccc
Confidence            999998   2233345566789999999999999999999999999                3433221        136


Q ss_pred             HHHHHHHHHhhcCcccccccccCCCCCCChhhHHHHHhhhhhccccCcccccccCCCCCccccCCCCccccccccccCCC
Q 001500          252 EVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNS  331 (1066)
Q Consensus       252 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ls~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  331 (1066)
                      |||+.   +                                ..+++|        +|+.+                    
T Consensus       410 e~l~~---~--------------------------------~~~~~~--------l~d~r--------------------  426 (1156)
T KOG1931|consen  410 EQLKE---T--------------------------------FVLSTG--------LLDNR--------------------  426 (1156)
T ss_pred             cccce---E--------------------------------eeehhh--------hhhcc--------------------
Confidence            77742   0                                234444        66654                    


Q ss_pred             CCCCCCCCCcchhhhHHHHhhhhhhcccCChhhHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHhHHHHHHHH
Q 001500          332 SPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCF  411 (1066)
Q Consensus       332 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~LkeAL~S~e~F~~~Yl~Lt~~Ai~~yk~~~R~Rsa~~L~~dLA~l~y  411 (1066)
                       |...+.+.                   -.+.++++|+.+..+|.++|+++.+.++..|+++.|.|.|+.++.|+|++|.
T Consensus       427 -~~~~ke~~-------------------S~~~k~~~~~~~~~s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~  486 (1156)
T KOG1931|consen  427 -PTLTKEAL-------------------SLFNKLEEALQRIVSFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYS  486 (1156)
T ss_pred             -cCcchhhh-------------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHh
Confidence             21101011                   1478999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhCCcchHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHh
Q 001500          412 KHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAY  491 (1066)
Q Consensus       412 ~~gdY~kA~~~l~~~~~~Y~~egW~~L~~~~L~~~a~C~k~L~~~~dYv~~~l~LLs~~~~~~~~~er~~~~~ell~~~~  491 (1066)
                      ..+.+++|+.++.++...+..++|....++++..+++|++.|+...+|.+++.-+.+..  .+.+..|.+++.+++++..
T Consensus       487 ~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~~~~ia~~~--~L~~~~r~h~~~k~l~~~~  564 (1156)
T KOG1931|consen  487 ILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNILGLCKAYDKTESSIAKFH--DLQELNRKHLMYKLLGLFE  564 (1156)
T ss_pred             hhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhH--HHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999998555432  4666778899999887653


Q ss_pred             c---CCCC-------C--cccc-CCCceEeecCCC-------------C-Cccc-----------cC---CCCe---EEE
Q 001500          492 G---EMKD-------P--VPLD-VSSLITFSGNPG-------------P-PLEL-----------CD---GDPG---TLS  527 (1066)
Q Consensus       492 s---~l~~-------~--v~~~-~~~l~~~~~~~~-------------~-p~~~-----------~~---~D~~---~l~  527 (1066)
                      -   ...+       .  +..+ ++..++......             + +.++           |.   .+.+   +..
T Consensus       565 ~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~  644 (1156)
T KOG1931|consen  565 VFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDGDVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFE  644 (1156)
T ss_pred             hhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecceeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeee
Confidence            1   0000       0  0000 000000000000             0 0000           00   0000   111


Q ss_pred             E------------------------EEEeCCCCceE-----------eeEEEEEEEecc------cCCCCceEEEecCce
Q 001500          528 V------------------------TVWSGFPDDIT-----------VDTLSLTLMATY------NADEGAKALNTSTAT  566 (1066)
Q Consensus       528 V------------------------~l~s~lP~~I~-----------~d~v~l~L~~~~------~~~~~~~~l~s~~~v  566 (1066)
                      +                        ++.+.-|.+.+           -.+++++-++..      ...++..-.-++.++
T Consensus       645 v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v  724 (1156)
T KOG1931|consen  645 VILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGLNCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPV  724 (1156)
T ss_pred             eEeeccccccccccchhhhccchhheeecCccccchhhhhhhccccchhhcceeecccccccccchhhhcccccccccce
Confidence            1                        22222221111           111111111100      011111223467788


Q ss_pred             EeeCCccEEEEEcCCCcceeEEEEEEEEEEcceeeeeeccccCCCCCCccccccCCCCCCeEEEEcCCCeeEEEeccCCC
Q 001500          567 VLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSP  646 (1066)
Q Consensus       567 ~L~PG~Nki~L~~~~~~~G~y~l~~l~i~ig~l~F~s~~f~~~~~~~~~~~~s~~~~~~p~~~v~~~~p~v~l~~~~~~p  646 (1066)
                      .|.||.|.+++..++..+|.|...+++.++|.+.|+++.+.   |++.+|+++.+ |         ..++..  +   ..
T Consensus       725 ~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~---~~~k~d~~s~~-P---------~~~~~~--l---~~  786 (1156)
T KOG1931|consen  725 SLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF---PTKKNDQGSTE-P---------ETKKER--L---QC  786 (1156)
T ss_pred             eeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC---CcccccccccC-C---------ccccch--H---HH
Confidence            99999999999999999999999999999999999976442   56666665433 2         222111  1   12


Q ss_pred             cccCccEEEEEEEEcCcccc-cceEEEEecCCCccccccccccccccccccccccccCccccccccccccccccccccce
Q 001500          647 LLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGR  725 (1066)
Q Consensus       647 lL~g~~q~V~l~V~sG~~~i-~~~~L~l~~s~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  725 (1066)
                      +++|+.|+|+.+++.|...| .++.+++.|....++..+..+.+     .++...          ..+..++.. .....
T Consensus       787 lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T~~-----~ae~~~----------~d~~~~~s~-~~~p~  850 (1156)
T KOG1931|consen  787 LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENTTI-----FAEAAR----------NDKNIFESL-LCTPK  850 (1156)
T ss_pred             HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccccc-----cccccc----------cCccchhhh-ccccc
Confidence            89999999999999999888 45778887777777666543211     111000          001111111 22345


Q ss_pred             eecCCCCCCceeEEEEEEEEeeccccCCccccCCCcccccccceeEEEEeeecccccceeeeEEEEEeeCCeEEEeEEee
Q 001500          726 IQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIAD  805 (1066)
Q Consensus       726 I~l~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~i~~~~i~l~f~~PF~vs~~l~s  805 (1066)
                      +.+.+++...-...++|+++..|.   |.          ..   +..+++.|+ |+|+.++++|+.+|.+||+|++++++
T Consensus       851 ~~~~d~e~~~~~~~~ip~l~~~d~---~s----------s~---h~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~  913 (1156)
T KOG1931|consen  851 LIFFDFEESFISLYEIPVLNGFDC---FS----------SD---HFNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLF  913 (1156)
T ss_pred             eEEecchhcccccccccccCCccc---cc----------cc---cccceeEec-cchhhhheehhhheecccceeEeeeh
Confidence            666666766666677777753331   11          11   235556666 88888999999999999999999999


Q ss_pred             ccCCcceEEEEEEeeccccceEeccceeccccCccccccCCCCCCCCccceeecCCCeeeEEEEEEcCCCCCchhhcccc
Q 001500          806 KCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVR  885 (1066)
Q Consensus       806 ~~~~~~~~lqv~l~~~sp~~l~i~~~~l~~~~~~~~~~~~~~~p~s~l~~l~l~~~~~~s~~f~l~~~~~~~~~~~p~~~  885 (1066)
                      .|+|+.+++||++++.....+...+..+.+.+++.+..+.+.|+. +.+|+..    ..+.+|.+.+.+..++       
T Consensus       914 ~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~~~~~t~-S~~p~~~----~~s~~~~~il~~~~ep-------  981 (1156)
T KOG1931|consen  914 ECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQNDLLNTK-SFFPNEC----IESVVFDKILICLNEP-------  981 (1156)
T ss_pred             hcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhcCCCCcc-ccccHHH----HHHHHHHHHHHHhcCC-------
Confidence            999988899999999999999999999999998888777766665 6667654    3444554444443232       


Q ss_pred             cCeeEEEEEec------cccc--ccCCCCceeeeccCccccccccceeeeeeecCccccccceeeeccCCCCcceeCceE
Q 001500          886 RDSLLNIQYGI------SGKR--TIGAHPPVTAEATGAEDAREGLIFRSALVLQRPVLDPTLAIGFLALPSDGLRVGQLV  957 (1066)
Q Consensus       886 ~~~~~~~~y~~------~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~tl~~l~~~~le~~~~~~~~p~~~~~~Rvgt~~  957 (1066)
                       ++.+++....      .++.  ++..++-|.+.|       |...|+++|.|+        ++.+++.|.++||||..|
T Consensus       982 -~~~lh~~~s~~~~~~~d~d~~~~~~~~r~y~~~~-------qlv~~~~~~dvq--------a~~~p~~~~~~~rv~~~~ 1045 (1156)
T KOG1931|consen  982 -ESILHSRGSAGASFVTDMDELERNLVPRTYTVPF-------QLVGFEPFFDVQ--------AEQMPTSHDELCRVGALI 1045 (1156)
T ss_pred             -cccccccccccccccchHHhhhccccccccccee-------cccCceeeeeee--------eeeccCcchhHHHHhhcc
Confidence             0233333322      2221  223455666676       467799999996        566677899999999999


Q ss_pred             EEEEEEEEecCccchhccc--cCceEEEEEecCCCcEEEEecceeEEEeeCCCCCeEEEEEEEEEcccCCCCCCccccCC
Q 001500          958 SMKWRVERLKDFEENEASQ--RNDEVLYEVNANADNWMIAGRKRGYVSLPTKQGSRIVISILCVPLLAGYVRPPQLGLPG 1035 (1066)
Q Consensus       958 ~l~~~i~~l~~~~~~~~~~--~~~~L~yev~~~s~~wmvsGrk~gvvs~~~~~~~~~~v~~~~~PL~aGyl~lP~l~L~~ 1035 (1066)
                      +|+|+||||+++.+++.+.  ++.++||||++++++|||||||+|+|+|+.++ ++|++++.||||+|||||||+|+|++
T Consensus      1046 ~mel~iTrl~el~~s~k~~e~qs~elmYEv~a~s~~Wli~Gr~~g~Is~~~~q-~t~~i~v~~vPL~aGyl~lP~v~l~n 1124 (1156)
T KOG1931|consen 1046 GMELSITRLVELLESDKQDEIQSGELMYEVLANSNNWLIAGRKRGVISMKRKQ-TTHQISVHVVPLKAGYLPLPRVRLTN 1124 (1156)
T ss_pred             CceEEEEeehhcccchhhhhcccceEEEEecCCCceEEEecCccceeeeeccc-cceEEEEEEEEeccccccCceeeccc
Confidence            9999999999988877433  45899999999999999999999999999987 99999999999999999999999999


Q ss_pred             ccCCccCCCCCCCceEEEeCCCCCcccccc
Q 001500         1036 VEEANISCNPPGPHLICVLPPTLSSSFCIA 1065 (1066)
Q Consensus      1036 ~~~~~~~~~~~~~~~i~v~p~~~~~~~~~~ 1065 (1066)
                      |.++|.+++..+++.++++||...+|.|.+
T Consensus      1125 ~~~a~~s~k~d~~~~v~~lPpvlnss~~l~ 1154 (1156)
T KOG1931|consen 1125 YNDAGKSLKVDKHNLVEPLPPVLNSSPDLQ 1154 (1156)
T ss_pred             cccccccccCCCCCcccCCcccccCCCCCc
Confidence            999999999999999999999999999976

>KOG4386 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []	Back alignment and domain information

>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>KOG1931 consensus Putative transmembrane protein [General function prediction only]	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>KOG2625 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF12688 TPR_5: Tetratrico peptide repeat	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1066
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1kt0_A		457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-05
2if4_A		338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-04
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 55.2 bits (132), Expect = 1e-07
 Identities = 97/661 (14%), Positives = 181/661 (27%), Gaps = 191/661 (28%)

Query: 143 ISFSKALAQH--EDILPFCMREVWVITACLALIDA-----TSSQYNDGLAAPDIEKEFYR 195
           + F     Q+  +DIL            C  + D      +  + +  + + D      R
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 196 LLGDLYSLCR------IKFM----RLAY--LIG--HGTDIERSPVNSASLSML------- 234
           L     +L         KF+    R+ Y  L+        + S +    +          
Sbjct: 67  LFW---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 235 -PWPKPPVWPLVPADASAEVLAKEKLILQATPRVK-H----FGIHRKPLPLEPSVLLREA 288
             + K  V  L P     + L +    L+    V        G   K      + +  + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE----LRPAKNVLIDGVLGSG---K------TWVALDV 170

Query: 289 --NRRRASLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLA 346
             + +        +F +      ++    SP   ++ +        P + S  D    + 
Sbjct: 171 CLSYKVQCKMDFKIFWL------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 347 EIFVASEHALRQTISNPNLLKSL---------SSVEEFEQKYLELTKGAANNYHCSWWK- 396
               + +  LR+ + +      L          +   F             N  C   K 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------------NLSC---KI 268

Query: 397 ----RHGVVLDGEIAAVCFKHGNYDQAAKSYEK-----VCALYSGEGWQDLLAEVL---P 444
               R   V D  ++A    H + D  + +        +   Y     QDL  EVL   P
Sbjct: 269 LLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 445 NL----AECQKILNDEAGYL-------LSCVRLLSLDKGLFSTKERQAFQ---------- 483
                 AE  +                L+ +   SL+  L   + R+ F           
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAH 386

Query: 484 --SEVISLAYGEMKDPVPLD-VSSLITFSGNPGPPLELCDGDPGTLSVTVWSGFPDDITV 540
             + ++SL + ++     +  V+ L  +S      L        T+S+      P     
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYS------LVEKQPKESTISI------PS---- 430

Query: 541 DTLSLTLMATYNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLR 600
             + L L       E   AL+ S        +   + DL P     Y       HIG   
Sbjct: 431 --IYLELKVK---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY----SHIGH-- 479

Query: 601 FRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVG--II 658
              H    +   +                VF     +D              +++   I 
Sbjct: 480 ---H-LKNIEHPERMTLFR---------MVF-----LDF-------------RFLEQKIR 508

Query: 659 VQPIDYSLKGAILQIDTGPGLTIEESHFVEMESHIK------LSNLENC-HNIQKDCSLD 711
                ++  G+IL  +T   L   + +  + +   +      L  L     N+      D
Sbjct: 509 HDSTAWNASGSIL--NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 712 I 712
           +
Sbjct: 567 L 567

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457	Back alignment and structure

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1066
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	95.25
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.94
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	81.19

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.25  E-value=0.064  Score=26.73  Aligned_cols=86  Identities=15%  Similarity=0.017  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             999999998813981425898599999997418999999999999977731895017-9879999999999807741089
Q 001500          382 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL-LAEVLPNLAECQKILNDEAGYL  460 (1066)
Q Consensus       382 Lt~~Ai~~yk~~gR~Rsa~~L~~dLA~lyy~~gdY~kA~~ll~~~~~~Y~~egW~~L-~~~iL~~~a~C~k~L~~~~eYv  460 (1066)
                      ...+|+..+...+....+......+|..|...|+|++|..+|..+.......+.... ....+...+-|....++.....
T Consensus       140 ~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~  219 (290)
T d1qqea_         140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             99999999873376033346889999999981739999999999998681332455569999999999999846599999


Q ss_pred             HHHHHHH
Q ss_conf             9999983
Q 001500          461 LSCVRLL  467 (1066)
Q Consensus       461 ~~~l~LL  467 (1066)
                      ...-+..
T Consensus       220 ~~~~~~~  226 (290)
T d1qqea_         220 RTLQEGQ  226 (290)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHH
T ss_conf             9999999

PyMOL of d1qqea_

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure