Citrus Sinensis ID: 001503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | 2.2.26 [Sep-21-2011] | |||||||
| O82491 | 1074 | FACT complex subunit SPT1 | yes | no | 0.982 | 0.973 | 0.751 | 0.0 | |
| Q8H6B1 | 1055 | FACT complex subunit SPT1 | N/A | no | 0.979 | 0.988 | 0.715 | 0.0 | |
| Q7X923 | 1056 | FACT complex subunit SPT1 | yes | no | 0.985 | 0.994 | 0.729 | 0.0 | |
| Q920B9 | 1047 | FACT complex subunit SPT1 | yes | no | 0.916 | 0.932 | 0.363 | 1e-177 | |
| Q9Y5B9 | 1047 | FACT complex subunit SPT1 | yes | no | 0.916 | 0.932 | 0.364 | 1e-176 | |
| Q8IRG6 | 1083 | FACT complex subunit spt1 | yes | no | 0.934 | 0.918 | 0.366 | 1e-173 | |
| Q54S43 | 1072 | FACT complex subunit SPT1 | yes | no | 0.851 | 0.846 | 0.367 | 1e-167 | |
| Q9W603 | 1035 | FACT complex subunit SPT1 | N/A | no | 0.946 | 0.973 | 0.353 | 1e-165 | |
| O94267 | 1019 | FACT complex subunit spt1 | yes | no | 0.864 | 0.903 | 0.361 | 1e-163 | |
| Q2UBF1 | 1042 | FACT complex subunit spt1 | yes | no | 0.935 | 0.955 | 0.339 | 1e-160 |
| >sp|O82491|SPT16_ARATH FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1599 bits (4140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 794/1056 (75%), Positives = 912/1056 (86%), Gaps = 10/1056 (0%)
Query: 1 MADNRNGNAQMANGTG----GANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIA 56
MAD+RNGNA+ A +G N YSI+++NF +R +ALY HW KH +D WGSAD LAIA
Sbjct: 1 MADSRNGNAR-APPSGVPPKAGNTYSIDVKNFISRARALYEHWKKHSADLWGSADALAIA 59
Query: 57 TPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAV 116
TPPAS+DLRYLKSSALNIWLLGYEFP+T+MVF KKQI FLCS+ KASLL +VK+ A D +
Sbjct: 60 TPPASDDLRYLKSSALNIWLLGYEFPDTIMVFTKKQIHFLCSRNKASLLEVVKKPAHDEL 119
Query: 117 GADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRL 176
DV++HVK K DDG LMDAIF A+R S D D +VG IARE PEG+LLETW +RL
Sbjct: 120 KLDVIMHVKPKGDDGTGLMDAIFRAIRDLSRGDGNDSQVVGHIAREAPEGKLLETWTERL 179
Query: 177 QNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTH 236
+N+ FQ D+T GLS+LFAVKD E+M+VKKA YL Y+VM +VVP LE+ IDEEK VTH
Sbjct: 180 KNANFQFVDITGGLSDLFAVKDDTEVMSVKKAAYLAYSVMKNVVVPNLESAIDEEKDVTH 239
Query: 237 SLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSV 296
S LMD EKAILEPTKA VKL+ ENVDICYPPIFQSGG FDL+PSAASNDELL YD S+
Sbjct: 240 SALMDLTEKAILEPTKASVKLKPENVDICYPPIFQSGGKFDLKPSAASNDELLTYDPASI 299
Query: 297 IICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAAL 356
IICAVG+RYNSYCSN+AR++LIDAT LQSK YEVLLKAHEAAI AL+ G K++ YQAAL
Sbjct: 300 IICAVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAAIDALRSGRKINTVYQAAL 359
Query: 357 SVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQT 416
SVVE+ APE V LTKSAGTGIGLEFRESGLN+NAKND+V++ KM FNVS+GFQNL+ ++
Sbjct: 360 SVVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECES 419
Query: 417 -NKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNEDEEEEERPKVKAEANG 475
++ KN+ FSLLLADTV+V + PE++T K SK+VKDVAYSF EDEEEE +P+ KA +G
Sbjct: 420 ESRSKNKKFSLLLADTVLVTDQKPELLT-KCSKSVKDVAYSFKEDEEEE-KPRKKARTSG 477
Query: 476 TEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTT 535
+E +KT LRSD+ +SKEELR+QHQAELARQKNEET RRLAG SGAGD+R++AKT+
Sbjct: 478 SENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSA 537
Query: 536 DLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIR 595
D++AYKNVND+ P ++LMIQ+D +NEAVL PIYGS+VPFHVATIRTVS QDTNRNCYIR
Sbjct: 538 DVVAYKNVNDM-PHKELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCYIR 596
Query: 596 IIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESER 655
IIFNVPGTPFNPHD+NSLK+QGAIYLKEVSFR+KD RH EV IKTLRRQVMARESER
Sbjct: 597 IIFNVPGTPFNPHDSNSLKNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESER 656
Query: 656 AERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEE 715
AERATLVTQEKLQLAGN+FKP++L +LWIRP F GR +KIPGTLEAH NGFR++T+RP+E
Sbjct: 657 AERATLVTQEKLQLAGNKFKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDE 715
Query: 716 RVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGK 775
RVD++F NIKHAFFQPAEKEMITL+HFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+
Sbjct: 716 RVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGR 775
Query: 776 RSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHG 835
RSAYDPDEI+EEQRER RKNKINMDF F NRVND+W P+F LDLEFDQPLR+LGFHG
Sbjct: 776 RSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHG 835
Query: 836 VPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDV 895
VPHK SAFI+PTSSCLVELIE PFLVV+L EIEIVNLERVG GQKNFDM I+FKDFKKDV
Sbjct: 836 VPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDV 895
Query: 896 LRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLE 955
LR+DS+P+SSL+ IKEWLDTTDIKYYES+LNLNWRQILKTITDDPQSFIDDGGWEFLNL+
Sbjct: 896 LRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLD 955
Query: 956 ASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGKTW 1015
SDSES SEESD+GYEPSD+EV+S +EDE S+SESLVES+D+EEEDSE++SEEEKGKTW
Sbjct: 956 GSDSESGGSEESDKGYEPSDVEVESESEDEASESESLVESDDDEEEDSEQESEEEKGKTW 1015
Query: 1016 AELEREATNADREKGDDSDSEEERKRRKGKTFGKSR 1051
ELEREATNADRE G +SDSEEERKRRK K FGKSR
Sbjct: 1016 DELEREATNADREHGVESDSEEERKRRKMKAFGKSR 1051
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Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H6B1|SPT16_MAIZE FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7X923|SPT16_ORYSJ FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54S43|SPT16_DICDI FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2 | Back alignment and function description |
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| >sp|O94267|SPT16_SCHPO FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2UBF1|SPT16_ASPOR FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt16 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| 359487575 | 1071 | PREDICTED: FACT complex subunit SPT16-li | 0.998 | 0.992 | 0.801 | 0.0 | |
| 224122844 | 1082 | global transcription factor group [Popul | 0.984 | 0.968 | 0.834 | 0.0 | |
| 449433555 | 1073 | PREDICTED: FACT complex subunit SPT16-li | 1.0 | 0.992 | 0.809 | 0.0 | |
| 224124374 | 1065 | global transcription factor group [Popul | 0.998 | 0.998 | 0.823 | 0.0 | |
| 449490603 | 1073 | PREDICTED: LOW QUALITY PROTEIN: FACT com | 1.0 | 0.992 | 0.808 | 0.0 | |
| 147775766 | 1083 | hypothetical protein VITISV_017317 [Viti | 0.983 | 0.966 | 0.788 | 0.0 | |
| 225450478 | 1083 | PREDICTED: FACT complex subunit SPT16-li | 0.983 | 0.966 | 0.786 | 0.0 | |
| 356569402 | 1064 | PREDICTED: FACT complex subunit SPT16-li | 0.996 | 0.997 | 0.764 | 0.0 | |
| 356539781 | 1069 | PREDICTED: FACT complex subunit SPT16-li | 0.999 | 0.995 | 0.762 | 0.0 | |
| 356539779 | 1068 | PREDICTED: FACT complex subunit SPT16-li | 0.999 | 0.996 | 0.762 | 0.0 |
| >gi|359487575|ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1791 bits (4638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1073 (80%), Positives = 962/1073 (89%), Gaps = 10/1073 (0%)
Query: 1 MADNRNGNAQMANG--TGGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATP 58
MA++RNGNA+ ++G +G A+ Y+INL+NF+ RLK LYSHW +H SD WGS+D LAIATP
Sbjct: 1 MAEHRNGNAKPSDGKASGAASPYAINLDNFTKRLKTLYSHWKEHSSDLWGSSDALAIATP 60
Query: 59 PASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGA 118
PAS+DLRYLKSSALNIWLLGYEFPET+MVFMKKQI FLCSQKKASLL +V++SAK+AVG
Sbjct: 61 PASDDLRYLKSSALNIWLLGYEFPETIMVFMKKQIHFLCSQKKASLLEVVRKSAKEAVGV 120
Query: 119 DVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQN 178
+VV+HVKAK+DDG LMDAIF AVR+ S+ S D P+VG I RE PEG+LLE W ++L+N
Sbjct: 121 EVVMHVKAKSDDGTGLMDAIFRAVRANSS--SHDTPVVGHIGREAPEGKLLEMWTEKLKN 178
Query: 179 SGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSL 238
+ FQLSD+TNG S+LFA+KD E+ NVKKA +LT +VM VVPKLE VIDEEKKV+HS
Sbjct: 179 ADFQLSDITNGFSDLFAMKDSTELTNVKKAAFLTSSVMKHFVVPKLEKVIDEEKKVSHSS 238
Query: 239 LMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVII 298
LMD+ EKAILEP + VKL+AENVDICYPPIFQSGG FDLRPSA+SNDE LYYDS SVII
Sbjct: 239 LMDDTEKAILEPARVKVKLKAENVDICYPPIFQSGGEFDLRPSASSNDENLYYDSTSVII 298
Query: 299 CAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSV 358
CA+GSRYNSYCSN+AR+FLIDA +QSK YEVLLKAHEAAIGALKPGNKVSAAYQAAL+V
Sbjct: 299 CAIGSRYNSYCSNVARTFLIDANAMQSKAYEVLLKAHEAAIGALKPGNKVSAAYQAALAV 358
Query: 359 VEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNK 418
VE++APELV NLTKSAGTGIGLEFRESGLNLNAKNDRV+K M+FNVS+GFQNLQ TN
Sbjct: 359 VEKDAPELVSNLTKSAGTGIGLEFRESGLNLNAKNDRVLKPGMVFNVSLGFQNLQTDTNN 418
Query: 419 PKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNEDEEEEE--RPKVKAEANGT 476
PK Q FS+LLAD+VIVGE PEVVT SSKAVKDVAYSFNED++EEE RPKVK EANG
Sbjct: 419 PKTQKFSVLLADSVIVGEKGPEVVTSISSKAVKDVAYSFNEDDDEEEEERPKVKPEANGG 478
Query: 477 EALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTTD 536
EA+ SK TLRSDNQE+SKEELRRQHQAELARQKNEET RRLAGGGSGAGDNR + K T D
Sbjct: 479 EAVSSKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGGGSGAGDNRGAVKATGD 538
Query: 537 LIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRI 596
LIAYKNVNDL PP++LMIQ+DQKNEA+L PIYGSMVPFHVAT+++VSSQQDTNR CYIRI
Sbjct: 539 LIAYKNVNDLPPPKELMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQQDTNRTCYIRI 598
Query: 597 IFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERA 656
IFNVPGTPF+PHD+NS+K QG+IYLKEVSFRSKDPRHI EVV IKTLRRQV +RESERA
Sbjct: 599 IFNVPGTPFSPHDSNSMKFQGSIYLKEVSFRSKDPRHISEVVQMIKTLRRQVASRESERA 658
Query: 657 ERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEER 716
ERATLVTQEKLQLAG RFKPI+L DLWIRP FGGRGRK+ G+LE+H NGFR++TSRP+ER
Sbjct: 659 ERATLVTQEKLQLAGTRFKPIRLSDLWIRPSFGGRGRKLTGSLESHTNGFRYSTSRPDER 718
Query: 717 VDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKR 776
VDIM+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQF+VEVMDVVQTLGGGKR
Sbjct: 719 VDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFFVEVMDVVQTLGGGKR 778
Query: 777 SAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGV 836
SAYDPDEIEEEQRER RKNKINMDFQ+FVNRVNDLWGQP+F GLDLEFDQPLR+LGFHGV
Sbjct: 779 SAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFKGLDLEFDQPLRELGFHGV 838
Query: 837 PHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVL 896
PHKASAFIVPTSSCLVELIETPFLV+TL EIEIVNLERVGLGQKNFDMTIVFKDFK+DVL
Sbjct: 839 PHKASAFIVPTSSCLVELIETPFLVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVL 898
Query: 897 RIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEA 956
RIDSIPS+SLD IKEWLDTTD+KYYESRLNLNWR ILKTIT+DP+ FI+DGGWEFLNLE
Sbjct: 899 RIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITEDPEKFIEDGGWEFLNLEV 958
Query: 957 SDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGKTWA 1016
SDS+SENS+ESDQGYEPSD++ D+ +E+E DSESLVESED+ EEDS+ DSEEE+GKTW
Sbjct: 959 SDSDSENSQESDQGYEPSDVQSDTGSEEEGDDSESLVESEDDVEEDSDGDSEEEQGKTWE 1018
Query: 1017 ELEREATNADREKGDDSDSEEERKRRKGKTFGKSRGPPS----GGFPKRTKLR 1065
ELEREA+NADREKGD+SDSEEERKRRK K FGK+R P G PKR KLR
Sbjct: 1019 ELEREASNADREKGDESDSEEERKRRKMKAFGKARVPEKRSTRGSLPKRPKLR 1071
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122844|ref|XP_002318930.1| global transcription factor group [Populus trichocarpa] gi|222857306|gb|EEE94853.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449433555|ref|XP_004134563.1| PREDICTED: FACT complex subunit SPT16-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224124374|ref|XP_002330007.1| global transcription factor group [Populus trichocarpa] gi|222871432|gb|EEF08563.1| global transcription factor group [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449490603|ref|XP_004158653.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SPT16-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|147775766|emb|CAN64798.1| hypothetical protein VITISV_017317 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225450478|ref|XP_002280582.1| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356569402|ref|XP_003552890.1| PREDICTED: FACT complex subunit SPT16-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356539781|ref|XP_003538372.1| PREDICTED: FACT complex subunit SPT16-like isoform 1 [Glycine max] gi|356539783|ref|XP_003538373.1| PREDICTED: FACT complex subunit SPT16-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356539779|ref|XP_003538371.1| PREDICTED: FACT complex subunit SPT16-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| TAIR|locus:2132756 | 1074 | SPT16 "global transcription fa | 0.988 | 0.980 | 0.688 | 0.0 | |
| ZFIN|ZDB-GENE-031118-96 | 1077 | supt16h "suppressor of Ty 16 h | 0.700 | 0.692 | 0.363 | 5.2e-165 | |
| RGD|1310032 | 1047 | Supt16h "suppressor of Ty 16 h | 0.847 | 0.862 | 0.357 | 6.6e-162 | |
| MGI|MGI:1890948 | 1047 | Supt16 "suppressor of Ty 16" [ | 0.847 | 0.862 | 0.355 | 1.4e-161 | |
| UNIPROTKB|E1BNP8 | 1047 | SUPT16H "Uncharacterized prote | 0.847 | 0.862 | 0.356 | 2.9e-161 | |
| UNIPROTKB|E2REU7 | 1047 | SUPT16H "Uncharacterized prote | 0.847 | 0.862 | 0.355 | 4.6e-161 | |
| UNIPROTKB|Q9Y5B9 | 1047 | SUPT16H "FACT complex subunit | 0.847 | 0.862 | 0.355 | 4.6e-161 | |
| UNIPROTKB|F1S8K5 | 1048 | SUPT16H "Uncharacterized prote | 0.847 | 0.861 | 0.354 | 1.2e-160 | |
| DICTYBASE|DDB_G0282677 | 1072 | spt16 "FACT complex subunit SP | 0.846 | 0.840 | 0.371 | 2.3e-159 | |
| POMBASE|SPBP8B7.19 | 1019 | spt16 "FACT complex subunit Sp | 0.845 | 0.883 | 0.352 | 2.4e-153 |
| TAIR|locus:2132756 SPT16 "global transcription factor C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3762 (1329.3 bits), Expect = 0., P = 0.
Identities = 731/1061 (68%), Positives = 833/1061 (78%)
Query: 1 MADNRNGNAQMA-NGTG--GANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIAT 57
MAD+RNGNA+ +G N YSI+++NF +R +ALY HW KH +D WGSAD LAIAT
Sbjct: 1 MADSRNGNARAPPSGVPPKAGNTYSIDVKNFISRARALYEHWKKHSADLWGSADALAIAT 60
Query: 58 PPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVG 117
PPAS+DLRYLKSSALNIWLLGYEFP+T+MVF KKQI FLCS+ KASLL +VK+ A D +
Sbjct: 61 PPASDDLRYLKSSALNIWLLGYEFPDTIMVFTKKQIHFLCSRNKASLLEVVKKPAHDELK 120
Query: 118 ADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQ 177
DV++HVK K DDG LMDAIF A+R S D D +VG IARE PEG+LLETW +RL+
Sbjct: 121 LDVIMHVKPKGDDGTGLMDAIFRAIRDLSRGDGNDSQVVGHIAREAPEGKLLETWTERLK 180
Query: 178 NSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHS 237
N+ FQ D+T GLS+LFAVKD E+M+VKKA YL Y+VM +VVP LE+ IDEEK VTHS
Sbjct: 181 NANFQFVDITGGLSDLFAVKDDTEVMSVKKAAYLAYSVMKNVVVPNLESAIDEEKDVTHS 240
Query: 238 LLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVI 297
LMD EKAILEPTKA VKL+ ENVDICYPPIFQSGG FDL+PSAASNDELL YD S+I
Sbjct: 241 ALMDLTEKAILEPTKASVKLKPENVDICYPPIFQSGGKFDLKPSAASNDELLTYDPASII 300
Query: 298 ICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALS 357
ICAVG+RYNSYCSN+AR++LIDAT LQSK YEVLLKAHEAAI AL+ G K++ YQAALS
Sbjct: 301 ICAVGARYNSYCSNVARTYLIDATSLQSKAYEVLLKAHEAAIDALRSGRKINTVYQAALS 360
Query: 358 VVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQT- 416
VVE+ APE V LTKSAGTGIGLEFRESGLN+NAKND+V++ KM FNVS+GFQNL+ ++
Sbjct: 361 VVEKNAPEFVDKLTKSAGTGIGLEFRESGLNINAKNDKVLRPKMAFNVSLGFQNLECESE 420
Query: 417 NKPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGT 476
++ KN+ FSLLLADTV+V + PE++T K SK+VKDVAYSF +P+ KA +G+
Sbjct: 421 SRSKNKKFSLLLADTVLVTDQKPELLT-KCSKSVKDVAYSFKEDEEEE-KPRKKARTSGS 478
Query: 477 EALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTD 536
E +KT LRSD+ +SKEELR+QHQAELARQKNEET KT+ D
Sbjct: 479 ENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSAD 538
Query: 537 LIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRI 596
++AYKNVND+ P ++LMIQ+D +NEAVL PIYGS+VPFHVATIRTVS QDTNRNCYIRI
Sbjct: 539 VVAYKNVNDM-PHKELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCYIRI 597
Query: 597 IFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERA 656
IFNVPGTPFNPHD+NSLK+QGAIYLKEVSFR+KD RH EV IKTLRRQVMARESERA
Sbjct: 598 IFNVPGTPFNPHDSNSLKNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESERA 657
Query: 657 ERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEER 716
ERATLVTQEKLQLAGN+FKP++L +LWIRP F GR +KIPGTLEAH NGFR++T+RP+ER
Sbjct: 658 ERATLVTQEKLQLAGNKFKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDER 716
Query: 717 VDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKR 776
VD++F NIKHAFFQPAEKEMITL+HFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+R
Sbjct: 717 VDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRR 776
Query: 777 SAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGV 836
SAYDPDEI+EEQRER RKNKINMDF F NRVND+W P+F LDLEFDQPLR+LGFHGV
Sbjct: 777 SAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGV 836
Query: 837 PHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVL 896
PHK SAFI+PTSSCLVELIE PFLVV+L EIEIVNLERVG GQKNFDM I+FKDFKKDVL
Sbjct: 837 PHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVL 896
Query: 897 RXXXXXXXXXXXXKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFXXXXX 956
R KEWLDTTDIKYYES+LNLNWRQILKTITDDPQSFIDDGGWEF
Sbjct: 897 RVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLDG 956
Query: 957 XXXXXXXXXXXXQGYEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKTWA 1016
+GYEP KGKTW
Sbjct: 957 SDSESGGSEESDKGYEPSDVEVESESEDEASESESLVESDDDEEEDSEQESEEEKGKTWD 1016
Query: 1017 ELEREATNADREKGDDSDSEEERKRRKGKTFGKSRGPPSGG 1057
ELEREATNADRE G +SDSEEERKRRK K FGKSR SGG
Sbjct: 1017 ELEREATNADREHGVESDSEEERKRRKMKAFGKSRPGTSGG 1057
|
|
| ZFIN|ZDB-GENE-031118-96 supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| RGD|1310032 Supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1890948 Supt16 "suppressor of Ty 16" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BNP8 SUPT16H "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2REU7 SUPT16H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9Y5B9 SUPT16H "FACT complex subunit SPT16" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S8K5 SUPT16H "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0282677 spt16 "FACT complex subunit SPT16" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBP8B7.19 spt16 "FACT complex subunit Spt16" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8H6B1 | SPT16_MAIZE | No assigned EC number | 0.7155 | 0.9793 | 0.9886 | N/A | no |
| Q6C931 | SPT16_YARLI | No assigned EC number | 0.3400 | 0.8873 | 0.9421 | yes | no |
| Q6BXE5 | SPT16_DEBHA | No assigned EC number | 0.3526 | 0.8769 | 0.9041 | yes | no |
| Q8IRG6 | SPT16_DROME | No assigned EC number | 0.3665 | 0.9342 | 0.9187 | yes | no |
| Q920B9 | SP16H_MOUSE | No assigned EC number | 0.3637 | 0.9164 | 0.9321 | yes | no |
| Q54S43 | SPT16_DICDI | No assigned EC number | 0.3678 | 0.8516 | 0.8460 | yes | no |
| Q00976 | SPT16_KLULA | No assigned EC number | 0.3255 | 0.8384 | 0.8644 | yes | no |
| Q7X923 | SPT16_ORYSJ | No assigned EC number | 0.7292 | 0.9859 | 0.9943 | yes | no |
| Q4HYB8 | SPT16_GIBZE | No assigned EC number | 0.3411 | 0.9286 | 0.9564 | yes | no |
| Q4WJ02 | SPT16_ASPFU | No assigned EC number | 0.3439 | 0.9211 | 0.9627 | yes | no |
| Q9Y5B9 | SP16H_HUMAN | No assigned EC number | 0.3646 | 0.9164 | 0.9321 | yes | no |
| P0CQ22 | SPT16_CRYNJ | No assigned EC number | 0.3513 | 0.9051 | 0.9314 | yes | no |
| Q6FWT4 | SPT16_CANGA | No assigned EC number | 0.3302 | 0.8450 | 0.8763 | yes | no |
| Q5B2X8 | SPT16_EMENI | No assigned EC number | 0.3473 | 0.9239 | 0.9656 | yes | no |
| Q2UBF1 | SPT16_ASPOR | No assigned EC number | 0.3399 | 0.9352 | 0.9558 | yes | no |
| Q9N5R9 | SPT16_CAEEL | No assigned EC number | 0.3465 | 0.9314 | 0.9631 | yes | no |
| O94267 | SPT16_SCHPO | No assigned EC number | 0.3611 | 0.8647 | 0.9038 | yes | no |
| Q756A7 | SPT16_ASHGO | No assigned EC number | 0.3383 | 0.9051 | 0.9350 | yes | no |
| O82491 | SPT16_ARATH | No assigned EC number | 0.7518 | 0.9821 | 0.9739 | yes | no |
| P32558 | SPT16_YEAST | No assigned EC number | 0.3314 | 0.9070 | 0.9333 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1065 | |||
| COG5406 | 1001 | COG5406, COG5406, Nucleosome binding factor SPN, S | 0.0 | |
| cd01091 | 243 | cd01091, CDC68-like, Related to aminopeptidase P a | 1e-98 | |
| pfam08644 | 152 | pfam08644, SPT16, FACT complex subunit (SPT16/CDC6 | 5e-65 | |
| pfam08512 | 93 | pfam08512, Rtt106, Histone chaperone Rttp106-like | 4e-27 | |
| pfam00557 | 208 | pfam00557, Peptidase_M24, Metallopeptidase family | 1e-24 | |
| COG0006 | 384 | COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid | 8e-20 | |
| cd01066 | 207 | cd01066, APP_MetAP, A family including aminopeptid | 5e-18 | |
| cd01092 | 208 | cd01092, APP-like, Similar to Prolidase and Aminop | 2e-14 | |
| cd01087 | 243 | cd01087, Prolidase, Prolidase | 6e-07 | |
| PRK09795 | 361 | PRK09795, PRK09795, aminopeptidase; Provisional | 4e-06 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 1e-05 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 2e-05 | |
| pfam03344 | 715 | pfam03344, Daxx, Daxx Family | 3e-05 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 4e-05 | |
| pfam04931 | 784 | pfam04931, DNA_pol_phi, DNA polymerase phi | 2e-04 | |
| cd01086 | 238 | cd01086, MetAP1, Methionine Aminopeptidase 1 | 4e-04 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 5e-04 | |
| pfam04889 | 241 | pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont | 8e-04 | |
| COG5129 | 303 | COG5129, MAK16, Nuclear protein with HMG-like acid | 0.001 | |
| PRK15173 | 323 | PRK15173, PRK15173, peptidase; Provisional | 0.001 | |
| PRK14575 | 406 | PRK14575, PRK14575, putative peptidase; Provisiona | 0.001 | |
| TIGR00600 | 1034 | TIGR00600, rad2, DNA excision repair protein (rad2 | 0.002 | |
| pfam05793 | 528 | pfam05793, TFIIF_alpha, Transcription initiation f | 0.003 | |
| PHA03169 | 413 | PHA03169, PHA03169, hypothetical protein; Provisio | 0.003 | |
| pfam07263 | 514 | pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | 0.003 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 0.004 |
| >gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Score = 649 bits (1676), Expect = 0.0
Identities = 367/1030 (35%), Positives = 544/1030 (52%), Gaps = 61/1030 (5%)
Query: 21 YSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYE 80
I+ E F R + L H N + G D L + + + Y K++AL+IWLLGYE
Sbjct: 4 IRIDEERFEKRSRDLRKHLN----EEDGGPDSLLVMLGKSQDVNPYQKNTALHIWLLGYE 59
Query: 81 FPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVE---LMDA 137
FPET+++ S+KKA LL K A+ + VV + +T + E L
Sbjct: 60 FPETLIILDDVCTAITTSKKKAILL--QKGLAETS-LNIVVRNKDNRTKNMEENKKLFKG 116
Query: 138 IFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQ--NSGFQLSDVTNGLSELFA 195
+ S+ IVG ++ +G+ + W + S F SDV+ GLS++F
Sbjct: 117 SIYVIGSE-------NKIVGDFCKDVLQGKFINEWDSIFEPVKSEFNASDVSLGLSKMFL 169
Query: 196 VKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAI------LE 249
KD EEI N + + + +M + V ++E + D K+TH L D E I
Sbjct: 170 TKDAEEIANCRASSAASSVLM-RYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQT 228
Query: 250 PTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRYNSYC 309
+ + + ++ CY PI QSGG+ DL PSA S L G V++ ++G RYN YC
Sbjct: 229 KSLKLGDIDLDQLEWCYTPIIQSGGSIDLTPSAFSFPMELT---GDVVLLSIGIRYNGYC 285
Query: 310 SNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPN 369
SN++R+ L D Q K YE L + +G ++PG Y A + PEL PN
Sbjct: 286 SNMSRTILTDPDSEQQKNYEFLYMLQKYILGLVRPGTDSGIIYSEAEKYISSNGPELGPN 345
Query: 370 LTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLA 429
+ G IG+EFR S N KN RV++A IFN+S+GF NL N PKN ++LLL
Sbjct: 346 FIYNVGLMIGIEFRSSQKPFNVKNGRVLQAGCIFNISLGFGNLIN--PHPKNN-YALLLI 402
Query: 430 DTVIVGENNPEVVTCKSSKAVKDVAYSFNEDEEEEER--PKVKAEANGTEALPS-KTTLR 486
DT + +NP V T S KA D+++ F ED+E E + KA + + S ++ R
Sbjct: 403 DTEQISLSNPIVFT-DSPKAQGDISFLFGEDDETPEYLTLQDKAPDFLDKTISSHRSKFR 461
Query: 487 SDNQ--EISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTTDLIAYKNVN 544
+ + E++ + R +HQ EL + EE R S AG + K+ + +Y +
Sbjct: 462 DETREHELNARKKRVEHQKELLDKIIEEGLERFRNA-SDAGPDSIEEKSEKRIESYSR-D 519
Query: 545 DLLPP--RDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPG 602
LP +L I +D ++++ PI G VPFH+++I+ S + N Y+R+ F PG
Sbjct: 520 SQLPRQIGELRIIVDFARQSIILPIGGRPVPFHISSIKNASKNDEGNFV-YLRLNFKSPG 578
Query: 603 TPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLV 662
+ + +G +L+ ++ RS + ++ I L++ RE+ER E A ++
Sbjct: 579 KGGGKTEELPCEQRGEQFLRSITSRSIRGNRMSDLFKEINDLKKGATKRETERKEDADVL 638
Query: 663 TQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATS-RPEERVDIMF 721
Q+KL + +RP G G++ PG LE H NG RF + R + +DI+F
Sbjct: 639 EQDKLIERKLS-RTDVYMKTDVRP--GSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILF 695
Query: 722 GNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMD--VVQTLGGGKRSAY 779
NIKH FFQ E+I ++HFHL + I+ G +K +DVQFY E D V +T G++ Y
Sbjct: 696 SNIKHLFFQECNGELIVIIHFHLKSPILTGKRKVQDVQFYREASDTMVDETGKRGRKEHY 755
Query: 780 -DPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPH 838
D DE+E+EQ ER R+ ++ +F+SF + + + G +EF R LGF+GVP
Sbjct: 756 GDEDELEQEQEERRRRAALDQEFKSFASSIAE-----ASEGR-IEFKVQFRKLGFYGVPF 809
Query: 839 KASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRI 898
++S I PT+ CLV+L E PF V+TL E+EIVNLERV G KNFD+ + +DF + ++ I
Sbjct: 810 RSSVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQFGLKNFDVVFILRDFYRPLVHI 869
Query: 899 DSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEASD 958
+++P SLD +KEWLD+ DI + E+ NLNW I+K+I DP SF +DGGW FL + SD
Sbjct: 870 NTVPVESLDKLKEWLDSNDILFMETSANLNWNTIMKSIMKDPISFFEDGGWSFL-MVGSD 928
Query: 959 SESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSE-EEKGKTWAE 1017
ES+ SEE YE S D +++ D D ES SED E++SE DS EE G+ W E
Sbjct: 929 DESDESEEEVSEYEASS---DDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDE 985
Query: 1018 LEREATNADR 1027
LE +A R
Sbjct: 986 LESKAAYDSR 995
|
Length = 1001 |
| >gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor | Back alignment and domain information |
|---|
| >gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68) | Back alignment and domain information |
|---|
| >gnl|CDD|219876 pfam08512, Rtt106, Histone chaperone Rttp106-like | Back alignment and domain information |
|---|
| >gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24 | Back alignment and domain information |
|---|
| >gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P, aminopeptidase M, and prolidase | Back alignment and domain information |
|---|
| >gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P | Back alignment and domain information |
|---|
| >gnl|CDD|238520 cd01087, Prolidase, Prolidase | Back alignment and domain information |
|---|
| >gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|217503 pfam03344, Daxx, Daxx Family | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi | Back alignment and domain information |
|---|
| >gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1 | Back alignment and domain information |
|---|
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
| >gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein | Back alignment and domain information |
|---|
| >gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | Back alignment and domain information |
|---|
| >gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1) | Back alignment and domain information |
|---|
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| KOG1189 | 960 | consensus Global transcriptional regulator, cell d | 100.0 | |
| COG5406 | 1001 | Nucleosome binding factor SPN, SPT16 subunit [Tran | 100.0 | |
| PF08644 | 152 | SPT16: FACT complex subunit (SPT16/CDC68); InterPr | 100.0 | |
| PRK09795 | 361 | aminopeptidase; Provisional | 100.0 | |
| TIGR02993 | 391 | ectoine_eutD ectoine utilization protein EutD. Mem | 100.0 | |
| COG0006 | 384 | PepP Xaa-Pro aminopeptidase [Amino acid transport | 100.0 | |
| PRK14575 | 406 | putative peptidase; Provisional | 100.0 | |
| PRK10879 | 438 | proline aminopeptidase P II; Provisional | 100.0 | |
| PRK14576 | 405 | putative endopeptidase; Provisional | 100.0 | |
| cd01091 | 243 | CDC68-like Related to aminopeptidase P and aminope | 100.0 | |
| PRK15173 | 323 | peptidase; Provisional | 100.0 | |
| PRK13607 | 443 | proline dipeptidase; Provisional | 100.0 | |
| KOG2414 | 488 | consensus Putative Xaa-Pro aminopeptidase [Amino a | 100.0 | |
| PRK07281 | 286 | methionine aminopeptidase; Reviewed | 100.0 | |
| PRK12897 | 248 | methionine aminopeptidase; Reviewed | 100.0 | |
| PRK12318 | 291 | methionine aminopeptidase; Provisional | 100.0 | |
| TIGR00500 | 247 | met_pdase_I methionine aminopeptidase, type I. Met | 100.0 | |
| PRK05716 | 252 | methionine aminopeptidase; Validated | 100.0 | |
| PRK12896 | 255 | methionine aminopeptidase; Reviewed | 100.0 | |
| cd01090 | 228 | Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. | 100.0 | |
| PLN03158 | 396 | methionine aminopeptidase; Provisional | 100.0 | |
| cd01087 | 243 | Prolidase Prolidase. E.C. 3.4.13.9. Also known as | 100.0 | |
| cd01092 | 208 | APP-like Similar to Prolidase and Aminopeptidase P | 100.0 | |
| KOG2737 | 492 | consensus Putative metallopeptidase [General funct | 100.0 | |
| cd01086 | 238 | MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 | 100.0 | |
| PF00557 | 207 | Peptidase_M24: Metallopeptidase family M24 This Pr | 100.0 | |
| cd01085 | 224 | APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also | 100.0 | |
| KOG0526 | 615 | consensus Nucleosome-binding factor SPN, POB3 subu | 100.0 | |
| cd01066 | 207 | APP_MetAP A family including aminopeptidase P, ami | 100.0 | |
| cd01089 | 228 | PA2G4-like Related to aminopepdidase M, this famil | 99.97 | |
| COG0024 | 255 | Map Methionine aminopeptidase [Translation, riboso | 99.97 | |
| COG5165 | 508 | POB3 Nucleosome-binding factor SPN, POB3 subunit [ | 99.96 | |
| KOG2738 | 369 | consensus Putative methionine aminopeptidase [Post | 99.96 | |
| KOG2413 | 606 | consensus Xaa-Pro aminopeptidase [Amino acid trans | 99.95 | |
| PTZ00053 | 470 | methionine aminopeptidase 2; Provisional | 99.95 | |
| TIGR00495 | 389 | crvDNA_42K 42K curved DNA binding protein. Protein | 99.94 | |
| PRK08671 | 291 | methionine aminopeptidase; Provisional | 99.94 | |
| TIGR00501 | 295 | met_pdase_II methionine aminopeptidase, type II. M | 99.94 | |
| cd01088 | 291 | MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 | 99.93 | |
| PF14826 | 163 | FACT-Spt16_Nlob: FACT complex subunit SPT16 N-term | 99.91 | |
| PF08512 | 95 | Rtt106: Histone chaperone Rttp106-like; InterPro: | 99.87 | |
| PF03531 | 222 | SSrecog: Structure-specific recognition protein (S | 99.22 | |
| PF01321 | 132 | Creatinase_N: Creatinase/Prolidase N-terminal doma | 99.03 | |
| KOG2775 | 397 | consensus Metallopeptidase [General function predi | 98.9 | |
| KOG2776 | 398 | consensus Metallopeptidase [General function predi | 98.84 | |
| KOG2413 | 606 | consensus Xaa-Pro aminopeptidase [Amino acid trans | 96.82 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.77 | |
| PLN03158 | 396 | methionine aminopeptidase; Provisional | 96.7 | |
| PF05195 | 134 | AMP_N: Aminopeptidase P, N-terminal domain; InterP | 96.61 | |
| cd01086 | 238 | MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18 | 96.6 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 96.33 | |
| PRK05716 | 252 | methionine aminopeptidase; Validated | 96.07 | |
| cd01088 | 291 | MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18 | 95.85 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 95.72 | |
| PRK12896 | 255 | methionine aminopeptidase; Reviewed | 95.66 | |
| KOG3064 | 303 | consensus RNA-binding nuclear protein (MAK16) cont | 95.63 | |
| KOG2738 | 369 | consensus Putative methionine aminopeptidase [Post | 95.48 | |
| COG0024 | 255 | Map Methionine aminopeptidase [Translation, riboso | 95.4 | |
| PF05764 | 240 | YL1: YL1 nuclear protein; InterPro: IPR008895 The | 94.98 | |
| KOG1189 | 960 | consensus Global transcriptional regulator, cell d | 94.67 | |
| TIGR00495 | 389 | crvDNA_42K 42K curved DNA binding protein. Protein | 94.4 | |
| TIGR00501 | 295 | met_pdase_II methionine aminopeptidase, type II. M | 93.47 | |
| PRK08671 | 291 | methionine aminopeptidase; Provisional | 93.29 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 93.1 | |
| KOG3064 | 303 | consensus RNA-binding nuclear protein (MAK16) cont | 92.65 | |
| TIGR00500 | 247 | met_pdase_I methionine aminopeptidase, type I. Met | 92.23 | |
| PTZ00053 | 470 | methionine aminopeptidase 2; Provisional | 92.2 | |
| PF00557 | 207 | Peptidase_M24: Metallopeptidase family M24 This Pr | 91.96 | |
| cd01089 | 228 | PA2G4-like Related to aminopepdidase M, this famil | 91.89 | |
| PF04147 | 840 | Nop14: Nop14-like family ; InterPro: IPR007276 Emg | 90.99 | |
| KOG0526 | 615 | consensus Nucleosome-binding factor SPN, POB3 subu | 90.66 | |
| PRK12897 | 248 | methionine aminopeptidase; Reviewed | 90.56 | |
| cd01087 | 243 | Prolidase Prolidase. E.C. 3.4.13.9. Also known as | 90.48 | |
| cd01092 | 208 | APP-like Similar to Prolidase and Aminopeptidase P | 90.41 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 90.18 | |
| PF04147 | 840 | Nop14: Nop14-like family ; InterPro: IPR007276 Emg | 90.03 | |
| KOG2038 | 988 | consensus CAATT-binding transcription factor/60S r | 89.93 | |
| COG5406 | 1001 | Nucleosome binding factor SPN, SPT16 subunit [Tran | 89.11 | |
| KOG2038 | 988 | consensus CAATT-binding transcription factor/60S r | 88.39 | |
| cd01066 | 207 | APP_MetAP A family including aminopeptidase P, ami | 87.93 | |
| PTZ00007 | 337 | (NAP-L) nucleosome assembly protein -L; Provisiona | 87.67 | |
| PRK12318 | 291 | methionine aminopeptidase; Provisional | 84.42 | |
| PF02724 | 622 | CDC45: CDC45-like protein; InterPro: IPR003874 CDC | 84.31 | |
| PF05285 | 324 | SDA1: SDA1; InterPro: IPR007949 This domain consis | 83.63 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 83.15 | |
| PF13104 | 45 | DUF3956: Protein of unknown function (DUF3956) | 83.11 | |
| PRK07281 | 286 | methionine aminopeptidase; Reviewed | 82.81 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 82.2 | |
| PF06524 | 314 | NOA36: NOA36 protein; InterPro: IPR010531 This fam | 81.55 | |
| PF09026 | 101 | CENP-B_dimeris: Centromere protein B dimerisation | 81.32 | |
| KOG2775 | 397 | consensus Metallopeptidase [General function predi | 80.64 | |
| cd01090 | 228 | Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. | 80.64 |
| >KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-246 Score=2074.93 Aligned_cols=943 Identities=50% Similarity=0.826 Sum_probs=861.7
Q ss_pred EeCCCCCCcccccccccceEEEcCCcCCcEEEEEECCcEEEEEeCCccchHHHHHhh---ccccCCcEEEEEeccccCcc
Q 001503 55 IATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRS---AKDAVGADVVIHVKAKTDDG 131 (1065)
Q Consensus 55 i~~g~~~~~~~Y~ks~al~~wLtGye~p~tlllit~~~~~ll~s~kK~~~le~~~~~---~~~~~~vei~~~~kd~~~~~ 131 (1065)
++.|.++++++|+|++||+.||+||++|+|+||++++.++++++.+|+.+|..+... ..+.+.+.++++.+ ..++.
T Consensus 2 v~~G~s~dd~~Y~KssAL~~WLlGYEfpdTilv~~~~~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k-~d~n~ 80 (960)
T KOG1189|consen 2 VVVGVSEDDNPYQKSSALFTWLLGYEFPDTILVLCKDKIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDK-NDDNK 80 (960)
T ss_pred eeecccccccchhHHHHHHHHHhccccCceEEEEecCcEEEEecchhHHHHHhhcccccCcccCcceEEEeccc-Ccccc
Confidence 444554678999999999999999999999999999999999999999999886432 12345677777733 23333
Q ss_pred ccHHHHHHHHHhcccCCCCCCCCEEEEeCCCCCcHHHHHHHHHHhhcCCCeEEeccCCcccccccCCHHHHHHHHHHHHH
Q 001503 132 VELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAGYL 211 (1065)
Q Consensus 132 ~~~~~~l~~~lk~~~~~~~~~~krIGv~~kd~~~g~~~~~l~~~l~~~~~~~vDvs~~l~~lRaVKde~EI~~~R~Aa~i 211 (1065)
.+|++|+++|+. ++++||+..++.++|.|+..|..+|...++..+|++..|+.+.+||++.||++||+|+++
T Consensus 81 -~~fdkii~~ik~-------~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~~ 152 (960)
T KOG1189|consen 81 -GLFDKIIKAIKS-------AGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAAA 152 (960)
T ss_pred -ccHHHHHHHHHh-------cCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHHH
Confidence 889999999993 789999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHccCccccccCCCCCCCCCCCEEEeCCCCCcCCCccCCcccccc
Q 001503 212 TYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPTKAGVKLRAENVDICYPPIFQSGGAFDLRPSAASNDELLYY 291 (1065)
Q Consensus 212 a~~~~~~~~~~~i~~iid~e~GvTE~eLa~~ie~~l~~~~k~~~~~~~~~~~~~y~pIV~SG~~~~l~~h~~~~~r~L~~ 291 (1065)
+.++|.+++.+.+..+||++..|||+.|+..++.++.+ .++..++++..++|||+||+|||++|+|+|++.++++.|
T Consensus 153 s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~-~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~~~~L-- 229 (960)
T KOG1189|consen 153 SSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIED-KKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSDDNHL-- 229 (960)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-cccCcccCccccccccChhhhcCCccccccccccccccc--
Confidence 99999999999999999999999999999999999976 366667888889999999999999999999999999999
Q ss_pred cCcceEEEEccceeCCeEeeeEEEEEEcCCHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHhCCccccCCC
Q 001503 292 DSGSVIICAVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLT 371 (1065)
Q Consensus 292 G~~dvI~vdlG~~y~GY~sditRT~~Vgps~eq~~~y~~llea~~a~i~~lrPGv~~~dV~~aa~~~l~~~Gpel~~~~~ 371 (1065)
+ +|+|++|+||++||||++|||+|+|+.+|+++|++++.||++++++||||++.++||.++.+++++.+|++.+.|+
T Consensus 230 ~---~I~cs~G~RynsYCSNv~RT~Lidpssemq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~ 306 (960)
T KOG1189|consen 230 H---VILCSLGIRYNSYCSNVSRTYLIDPSSEMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFT 306 (960)
T ss_pred c---eEEeeccchhhhhhccccceeeecchHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhh
Confidence 3 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccccccCCccccCCCCccccCCcEEEEeeccccccCCCCCCCCCeeEEEEEEEEEEeCCCc-eecCccCcccH
Q 001503 372 KSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNKPKNQMFSLLLADTVIVGENNP-EVVTCKSSKAV 450 (1065)
Q Consensus 372 h~~GHgIGle~~E~p~~i~~~~~~vLe~GMVfsIEpg~~~l~~~~~~~~~~~~gv~ieDTVlVTe~G~-evLT~~~pk~l 450 (1065)
+++|+||||+|+|+.++|+++|+++|++||||+|..|+.+|+++.. .+.|++.|.|||+|++++| ++||. +++..
T Consensus 307 k~lG~~iGlEFREssl~inaKnd~~lk~gmvFni~lGf~nl~n~~~---~~~yaL~l~DTvlv~e~~p~~vLT~-~~K~~ 382 (960)
T KOG1189|consen 307 KNLGFGIGLEFRESSLVINAKNDRVLKKGMVFNISLGFSNLTNPES---KNSYALLLSDTVLVGEDPPAEVLTD-SAKAV 382 (960)
T ss_pred hhcccccceeeecccccccccchhhhccCcEEEEeeccccccCccc---ccchhhhccceeeecCCCcchhhcc-cchhh
Confidence 9999999999999999999999999999999999999999998764 2449999999999999998 99996 99999
Q ss_pred hhhccccCCchhh-hc--c--cccccccCCcccccccccccCccccccHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 001503 451 KDVAYSFNEDEEE-EE--R--PKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAG 525 (1065)
Q Consensus 451 ~~I~~~~~d~~~~-~~--~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~e~~r~~~Q~eL~~~~~~e~~~r~~~~~~~~~ 525 (1065)
.+|+|+|++++++ +. + ..+.++++.++++ +.+++|++. ++|++|++|||||++|+++|+++||+++++.
T Consensus 383 ~dv~~~f~~eeeE~~~~~k~~~~~~~~r~~r~a~-l~~k~R~e~---~~ee~RKehQkeLa~qlnee~~~Rls~~s~~-- 456 (960)
T KOG1189|consen 383 KDVSYFFKDEEEEEELEKKDPATKVLGRGTRTAL-LTDKTRNET---SAEEKRKEHQKELADQLNEEALRRLSNQSGD-- 456 (960)
T ss_pred cccceeeccchhhhhhhhccccccccCccccchh-ccccccccc---cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--
Confidence 9999999988775 22 1 2233455667777 799999988 8999999999999999999999999987655
Q ss_pred CCCCccccccceeecCCCCCCCCCC-CceEEEEccCCEEEEeeCCcccceeeceeeeeeccccCCCceEEEEEeecCCCC
Q 001503 526 DNRASAKTTTDLIAYKNVNDLLPPR-DLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTP 604 (1065)
Q Consensus 526 ~~~~~~~~~~~~~sY~~~~~~P~~~-~~~i~vD~~~~~vilPi~G~~vPfHi~tiKn~s~~~e~~~~~~lrinF~~pg~~ 604 (1065)
++.+++..++++|||++++||+++ +|+|+||++++||||||||+||||||+||||+|+++| |+||||||||++||++
T Consensus 457 -s~~~~ks~k~~vsYk~~s~mP~~i~el~i~VD~k~esvilPI~g~~VPFHistikn~s~~~e-g~~tYLRinF~~pg~~ 534 (960)
T KOG1189|consen 457 -SKDEEKSRKRIVSYKRESQMPREIRELRIYVDKKYESVILPIFGIPVPFHISTIKNASQNVE-GDYTYLRINFNTPGSP 534 (960)
T ss_pred -ccchhhhhhccccccchhhcchhhhheEEEEecccceEEEeecCcccceehhhhhccccccc-CceeEEEEEecCCCCC
Confidence 456668899999999999999999 9999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCCcCccCcceEEEEEeeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeecCCCCCCccccccee
Q 001503 605 FNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWI 684 (1065)
Q Consensus 605 ~~~~~~~~~~~~~~~fikelt~rs~d~~~~~~~~~~I~~l~k~~~~re~e~~e~~~~v~q~~L~~~~~~~~~~~L~d~~~ 684 (1065)
.|+++..+|++|+|+||||+||||+|++|++++|++||+|||++++||+|+++++++|+||+|++++++++| +|+||||
T Consensus 535 ~g~~e~~~~~~~~a~flkeit~rs~~~~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p-~L~dlyi 613 (960)
T KOG1189|consen 535 GGKNEELPFENPGAQFLKEITFRSSNGKRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNP-KLKDLYI 613 (960)
T ss_pred CCCCCCCcCCCchhhhhhheeeeecCCcchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCC-chhheEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCCCCCccCCceEEEEecceeeecCCCCceeeeeccccceeeeccCCCccEEEEEEEcccceeeCceecceeEEEEee
Q 001503 685 RPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEV 764 (1065)
Q Consensus 685 rP~~~g~~kr~~G~le~h~ng~r~~~~~~~~~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~~vQF~~e~ 764 (1065)
||+|.| ||++|+||+|+|||||+| .|+++|||||+||||||||||++|||+||||||++|||+||||++|||||+||
T Consensus 614 Rp~i~~--Kr~~G~lEaH~NGfRy~s-~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~dVQFY~Ev 690 (960)
T KOG1189|consen 614 RPNIDT--KRIPGSLEAHENGFRYQS-LRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTKDVQFYREV 690 (960)
T ss_pred cCCccc--cccccceeeecCceeeee-ccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccceeeeeeeehh
Confidence 999999 999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccCCCcceecccCCCcceeccccCceeee
Q 001503 765 MDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFI 844 (1065)
Q Consensus 765 ~~~~~~~~~~r~~~~d~de~~~eq~e~~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~~~~p~~~l~f~g~~~~~~~~~ 844 (1065)
++++.||+++| ||+|+|||++||+||++|++||++|+.||++|++ ++ ...++|++|||+|||+|||+|++|+|
T Consensus 691 ~div~dlg~~~-~~~D~del~~EQ~Er~rr~~ln~~FksF~~kv~~----~~--~~~~efd~pfr~lGF~GvP~rssv~i 763 (960)
T KOG1189|consen 691 GDIVTDLGKRR-RMGDRDELEQEQEERDRRAKLNMAFKSFAEKVAE----AT--ESELEFDVPFRELGFNGVPFRSSVFI 763 (960)
T ss_pred hhHHHhhccCc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh--ccceeeccchhhcCcCCCCccceeee
Confidence 99977777665 4799999999999999999999999999999976 43 45689999999999999999999999
Q ss_pred ecCcccceeeccCCcEEEEeCceeEEEEEeecCCCcceeEEEEEecCCCCeEEEecccCCChHHHHHHhhhcCceeeecc
Q 001503 845 VPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESR 924 (1065)
Q Consensus 845 ~pt~~clv~l~e~P~~vi~l~eie~v~feRv~~~~k~FD~~~v~kd~~~~~~~i~~I~~~~l~~ik~wl~~~~i~~~e~~ 924 (1065)
+||.+|||+|+|||||||||+|||+||||||||++|||||+||||||+++|++|++||+++||.||+||++|||+|+||+
T Consensus 764 ~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~ 843 (960)
T KOG1189|consen 764 QPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGV 843 (960)
T ss_pred ecchhhhhccccCCceEEeecceeeeeeeeeeeccccceEEEEeccccccceeeeccchhhhhHHHHhhhcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHhhhhccCccchhccCCccccccccCCC--CCcCCccccCCCCCCCcCcCCCCCcCCCCcccccccccccccc
Q 001503 925 LNLNWRQILKTITDDPQSFIDDGGWEFLNLEASDS--ESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEED 1002 (1065)
Q Consensus 925 ~nlnW~~i~k~i~~d~~~f~~~ggw~fl~~~~~~~--~~~~~e~~d~~~e~s~~e~~~e~~~~~~~~d~~~~~~~~~~e~ 1002 (1065)
+||||++|||||++||.+||++|||+||+.+++|+ +.+++++++++|+++|+|+++++++|+++++ ++++|++++
T Consensus 844 ~sLNW~~ImKTI~dDP~~Ffe~GgW~fL~~~~sdsee~~~ese~e~~~y~psd~~v~~eS~ed~e~sE---~s~~de~~d 920 (960)
T KOG1189|consen 844 QSLNWTKIMKTITDDPIAFFEDGGWSFLNVESSDSEEGGDESEEEDSAYEPSDDDVSDESDEDEEESE---ESEEDEEDD 920 (960)
T ss_pred ccccHHHHhhhhccCHHHHHhcCCeeeecCCCCcccccccccccccccCCccccCccccccccccccc---ccccccccc
Confidence 99999999999999999999999999999987443 3345566789999998876665544333332 222222233
Q ss_pred CCccchhhccCChHHHHHHHHHhhhccCCCCCchHH
Q 001503 1003 SEEDSEEEKGKTWAELEREATNADREKGDDSDSEEE 1038 (1065)
Q Consensus 1003 ~~~~~~~~~g~~wdele~~a~~~d~~~~~~~~~~~~ 1038 (1065)
++.++|||+|+||||||++|+++|++++.+++....
T Consensus 921 e~~~sdEE~gkdwdele~ea~~~dr~~~~~~e~~s~ 956 (960)
T KOG1189|consen 921 EDLESDEESGKDWDELEREARNADREHGAEEERESE 956 (960)
T ss_pred ccccchhhhccchhhhHHHHhhcchhhchhhhcchh
Confidence 444557799999999999999999988765544433
|
|
| >COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p | Back alignment and domain information |
|---|
| >PRK09795 aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR02993 ectoine_eutD ectoine utilization protein EutD | Back alignment and domain information |
|---|
| >COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14575 putative peptidase; Provisional | Back alignment and domain information |
|---|
| >PRK10879 proline aminopeptidase P II; Provisional | Back alignment and domain information |
|---|
| >PRK14576 putative endopeptidase; Provisional | Back alignment and domain information |
|---|
| >cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor | Back alignment and domain information |
|---|
| >PRK15173 peptidase; Provisional | Back alignment and domain information |
|---|
| >PRK13607 proline dipeptidase; Provisional | Back alignment and domain information |
|---|
| >KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK07281 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >PRK12897 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >PRK12318 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR00500 met_pdase_I methionine aminopeptidase, type I | Back alignment and domain information |
|---|
| >PRK05716 methionine aminopeptidase; Validated | Back alignment and domain information |
|---|
| >PRK12896 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >cd01090 Creatinase Creatine amidinohydrolase | Back alignment and domain information |
|---|
| >PLN03158 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >cd01087 Prolidase Prolidase | Back alignment and domain information |
|---|
| >cd01092 APP-like Similar to Prolidase and Aminopeptidase P | Back alignment and domain information |
|---|
| >KOG2737 consensus Putative metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >cd01086 MetAP1 Methionine Aminopeptidase 1 | Back alignment and domain information |
|---|
| >PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01085 APP X-Prolyl Aminopeptidase 2 | Back alignment and domain information |
|---|
| >KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase | Back alignment and domain information |
|---|
| >cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 | Back alignment and domain information |
|---|
| >COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PTZ00053 methionine aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
| >TIGR00495 crvDNA_42K 42K curved DNA binding protein | Back alignment and domain information |
|---|
| >PRK08671 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >TIGR00501 met_pdase_II methionine aminopeptidase, type II | Back alignment and domain information |
|---|
| >cd01088 MetAP2 Methionine Aminopeptidase 2 | Back alignment and domain information |
|---|
| >PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A | Back alignment and domain information |
|---|
| >PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families | Back alignment and domain information |
|---|
| >PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin | Back alignment and domain information |
|---|
| >PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3 | Back alignment and domain information |
|---|
| >KOG2775 consensus Metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2776 consensus Metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2413 consensus Xaa-Pro aminopeptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PLN03158 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01086 MetAP1 Methionine Aminopeptidase 1 | Back alignment and domain information |
|---|
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
| >PRK05716 methionine aminopeptidase; Validated | Back alignment and domain information |
|---|
| >cd01088 MetAP2 Methionine Aminopeptidase 2 | Back alignment and domain information |
|---|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK12896 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 [] | Back alignment and domain information |
|---|
| >KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00495 crvDNA_42K 42K curved DNA binding protein | Back alignment and domain information |
|---|
| >TIGR00501 met_pdase_II methionine aminopeptidase, type II | Back alignment and domain information |
|---|
| >PRK08671 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
| >KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00500 met_pdase_I methionine aminopeptidase, type I | Back alignment and domain information |
|---|
| >PTZ00053 methionine aminopeptidase 2; Provisional | Back alignment and domain information |
|---|
| >PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4 | Back alignment and domain information |
|---|
| >PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] | Back alignment and domain information |
|---|
| >KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK12897 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >cd01087 Prolidase Prolidase | Back alignment and domain information |
|---|
| >cd01092 APP-like Similar to Prolidase and Aminopeptidase P | Back alignment and domain information |
|---|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
| >PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] | Back alignment and domain information |
|---|
| >KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
| >COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] | Back alignment and domain information |
|---|
| >cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase | Back alignment and domain information |
|---|
| >PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional | Back alignment and domain information |
|---|
| >PRK12318 methionine aminopeptidase; Provisional | Back alignment and domain information |
|---|
| >PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46 | Back alignment and domain information |
|---|
| >PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13104 DUF3956: Protein of unknown function (DUF3956) | Back alignment and domain information |
|---|
| >PRK07281 methionine aminopeptidase; Reviewed | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues | Back alignment and domain information |
|---|
| >PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box | Back alignment and domain information |
|---|
| >KOG2775 consensus Metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >cd01090 Creatinase Creatine amidinohydrolase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1065 | ||||
| 3cb6_A | 444 | Crystal Structure Of The S. Pombe Peptidase Homolog | 9e-67 | ||
| 3cb5_A | 444 | Crystal Structure Of The S. Pombe Peptidase Homolog | 7e-65 | ||
| 4ioy_X | 285 | Structure Of The Spt16 Middle Domain Reveals Functi | 9e-53 | ||
| 3bip_A | 467 | Crystal Structure Of Yeast Spt16 N-Terminal Domain | 4e-50 | ||
| 3bit_A | 453 | Crystal Structure Of Yeast Spt16 N-Terminal Domain | 2e-49 | ||
| 4fkc_A | 377 | Recombinant Prolidase From Thermococcus Sibiricus L | 2e-07 | ||
| 1pv9_A | 348 | Prolidase From Pyrococcus Furiosus Length = 348 | 3e-07 | ||
| 1wn1_A | 356 | Crystal Structure Of Dipeptiase From Pyrococcus Hor | 5e-06 | ||
| 2zsg_A | 359 | Crystal Structure Of X-Pro Aminopeptidase From Ther | 3e-04 | ||
| 1wy2_A | 351 | Crystal Structure Of The Prolidase From Pyrococcus | 4e-04 | ||
| 2bwt_A | 440 | Asp260ala Escherichia Coli Aminopeptidase P Length | 6e-04 | ||
| 1qxw_A | 252 | Crystal Structure Of Staphyloccocus Aureus In Compl | 7e-04 |
| >pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology Domain Of Fact Complex Subunit Spt16 (Form B) Length = 444 | Back alignment and structure |
|
| >pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology Domain Of Fact Complex Subunit Spt16 (form A) Length = 444 | Back alignment and structure |
| >pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional Features Of The Histone Chaperone Fact Length = 285 | Back alignment and structure |
| >pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain Length = 467 | Back alignment and structure |
| >pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain Length = 453 | Back alignment and structure |
| >pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus Length = 377 | Back alignment and structure |
| >pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus Length = 348 | Back alignment and structure |
| >pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii Ot3 Length = 356 | Back alignment and structure |
| >pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga Maritima Msb8 Length = 359 | Back alignment and structure |
| >pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus Horikoshii Ot3 Length = 351 | Back alignment and structure |
| >pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P Length = 440 | Back alignment and structure |
| >pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With An Aminoketone Inhibitor 54135. Length = 252 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 | Back alignment and structure |
|---|
Score = 385 bits (989), Expect = e-124
Identities = 151/456 (33%), Positives = 241/456 (52%), Gaps = 23/456 (5%)
Query: 16 GGANAYSINLENFSTRLKALYSHWNKHKSDY--WGSADVLAIATPPASEDLRYLKSSALN 73
G Y I+ F RL L + W + + D + + + Y KS+AL+
Sbjct: 1 GAMAEYEIDEITFHKRLGILLTSWKNEEDGKTLFQDCDSILVTVGAHDDTNPYQKSTALH 60
Query: 74 IWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVE 133
WLLGYEFP T+++ K +I L S KA++L + + A +++ K ++ +
Sbjct: 61 TWLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDA-EENKK 119
Query: 134 LMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQ--NSGFQLSDVTNGLS 191
L + I +R+ VG ++ +G+ + W + S F L D + GL+
Sbjct: 120 LFEKIIEYIRAT-------NKKVGVFPKDKTQGKFINEWDSIFEPVKSEFNLVDASLGLA 172
Query: 192 ELFAVKDQEEIMNVKKAGYLTYNVMNKIVVPKLENVIDEEKKVTHSLLMDEAEKAILEPT 251
+ A+KD++E+ N+K A ++ VM+K V +L ID+ KK+THS D+ E I
Sbjct: 173 KCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEA 232
Query: 252 KAGVK------LRAENVDICYPPIFQSGGAFDLRPSAASNDELLYYDSGSVIICAVGSRY 305
K + + ++ CY PI QSGG++DL+PSA ++D L+ D V++C++G RY
Sbjct: 233 FFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCSLGFRY 289
Query: 306 NSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPE 365
SYCSN+ R++L D Q K Y L+ + + G + Y L ++ + P+
Sbjct: 290 KSYCSNVGRTYLFDPDSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPD 349
Query: 366 LVPNLTKSAGTGIGLEFRESGLNLNAKNDRVVKAKMIFNVSIGFQNLQNQTNK-PKNQMF 424
L PN ++ G GIG+EFRES L +NAKN RV++A M N+SIGF NL N K +++ +
Sbjct: 350 LEPNFVRNLGAGIGIEFRESSLLVNAKNPRVLQAGMTLNLSIGFGNLINPHPKNSQSKEY 409
Query: 425 SLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNED 460
+LLL DT+ + ++P V T S KA D++Y F ED
Sbjct: 410 ALLLIDTIQITRSDPIVFT-DSPKAQGDISYFFGED 444
|
| >3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 | Back alignment and structure |
|---|
| >1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Length = 402 | Back alignment and structure |
|---|
| >1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Length = 401 | Back alignment and structure |
|---|
| >2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
| >3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Length = 356 | Back alignment and structure |
|---|
| >4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Length = 378 | Back alignment and structure |
|---|
| >1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Length = 356 | Back alignment and structure |
|---|
| >1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Length = 351 | Back alignment and structure |
|---|
| >2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Length = 261 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Length = 470 | Back alignment and structure |
|---|
| >3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A* Length = 517 | Back alignment and structure |
|---|
| >2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Length = 494 | Back alignment and structure |
|---|
| >2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Length = 440 | Back alignment and structure |
|---|
| >3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii} Length = 451 | Back alignment and structure |
|---|
| >3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Length = 427 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1065 | ||||
| d2gcla1 | 238 | b.55.1.10 (A:237-474) FACT complex subunit POB3, m | 3e-41 | |
| d1o0xa_ | 249 | d.127.1.1 (A:) Methionine aminopeptidase {Thermoto | 4e-12 | |
| d2gg2a1 | 262 | d.127.1.1 (A:3-264) Methionine aminopeptidase {Esc | 7e-10 | |
| d1pv9a2 | 221 | d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal | 9e-08 | |
| d2v3za2 | 264 | d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal | 3e-05 | |
| d1chma2 | 246 | d.127.1.1 (A:157-402) Creatinase, catalytic (C-ter | 7e-04 |
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: SSRP1-like domain: FACT complex subunit POB3, middle domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 149 bits (378), Expect = 3e-41
Identities = 29/235 (12%), Positives = 77/235 (32%), Gaps = 23/235 (9%)
Query: 691 RGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMV 750
RGR ++ + N R E + I+ P ++ ++ + +
Sbjct: 18 RGRY---DIDIYKNSIRLRGKTYEY--KLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQ 72
Query: 751 GNKK--TKDVQFYV-EVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNR 807
G +QF E +V L D+++++ + ++ + +R
Sbjct: 73 GQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAK-THIVLSHVLKGLTDR 131
Query: 808 VNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEI 867
+ G E+ ++ P + L + + ++
Sbjct: 132 RVIVPG---------EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTL-YIPFSDV 181
Query: 868 EIVNLERVGLG---QKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIK 919
+VN+ R G + FD+ +V + + +I ++++L + +++
Sbjct: 182 SMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSKNLR 235
|
| >d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} Length = 249 | Back information, alignment and structure |
|---|
| >d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} Length = 262 | Back information, alignment and structure |
|---|
| >d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 221 | Back information, alignment and structure |
|---|
| >d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 264 | Back information, alignment and structure |
|---|
| >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} Length = 246 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| d2gcla1 | 238 | FACT complex subunit POB3, middle domain {Baker's | 100.0 | |
| d1pv9a2 | 221 | Aminopeptidase P, C-terminal domain {Archaeon Pyro | 100.0 | |
| d1chma2 | 246 | Creatinase, catalytic (C-terminal) domain {Pseudom | 100.0 | |
| d1o0xa_ | 249 | Methionine aminopeptidase {Thermotoga maritima [Ta | 100.0 | |
| d2v3za2 | 264 | Aminopeptidase P, C-terminal domain {Escherichia c | 100.0 | |
| d1qxya_ | 249 | Methionine aminopeptidase {Staphylococcus aureus [ | 100.0 | |
| d2gg2a1 | 262 | Methionine aminopeptidase {Escherichia coli [TaxId | 100.0 | |
| d1xgsa2 | 218 | Methionine aminopeptidase {Archaeon Pyrococcus fur | 100.0 | |
| d1b6aa2 | 295 | Methionine aminopeptidase {Human (Homo sapiens) [T | 100.0 | |
| d1chma1 | 155 | Creatinase {Pseudomonas putida [TaxId: 303]} | 99.33 | |
| d1kp0a1 | 156 | Creatinase {Actinobacillus sp. [TaxId: 41114]} | 99.28 | |
| d1pv9a1 | 117 | Aminopeptidase P {Archaeon Pyrococcus furiosus [Ta | 98.82 | |
| d2v3za1 | 176 | Aminopeptidase P {Escherichia coli [TaxId: 562]} | 98.31 | |
| d1b6aa2 | 295 | Methionine aminopeptidase {Human (Homo sapiens) [T | 96.63 | |
| d1xgsa2 | 218 | Methionine aminopeptidase {Archaeon Pyrococcus fur | 95.51 | |
| d2v3za2 | 264 | Aminopeptidase P, C-terminal domain {Escherichia c | 94.54 | |
| d1o0xa_ | 249 | Methionine aminopeptidase {Thermotoga maritima [Ta | 93.91 | |
| d1chma2 | 246 | Creatinase, catalytic (C-terminal) domain {Pseudom | 93.73 | |
| d1qxya_ | 249 | Methionine aminopeptidase {Staphylococcus aureus [ | 93.49 | |
| d2gg2a1 | 262 | Methionine aminopeptidase {Escherichia coli [TaxId | 90.61 | |
| d1pv9a2 | 221 | Aminopeptidase P, C-terminal domain {Archaeon Pyro | 86.63 | |
| d2rnrb1 | 108 | TFIIH basal transcription factor complex p62 subun | 81.24 |
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: SSRP1-like domain: FACT complex subunit POB3, middle domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=334.41 Aligned_cols=218 Identities=13% Similarity=0.300 Sum_probs=176.3
Q ss_pred CCCCCEECCCCCCCCCCCCCEEEEEECCEEEECCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEECCCCEEECCEECC-
Q ss_conf 5546101158899875578518887331231017998205421254232320258894189999973565120753034-
Q 001503 678 KLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTK- 756 (1065)
Q Consensus 678 ~L~d~~~RP~~~~~~kr~~G~le~h~ng~r~~~~~~~~~~di~y~nIk~~ffqp~~~e~~v~~h~~L~~pi~~Gkkk~~- 756 (1065)
.+.||..--. -| | -+|++|.|+||+++ ++.++.|+|+||+|+|||||++++++++||||+||||+|||+|+
T Consensus 8 ~~~dv~~~~P-Rg---k--~~i~~~~~~lrl~g--~~~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~ 79 (238)
T d2gcla1 8 SFQDVFFTTP-RG---R--YDIDIYKNSIRLRG--KTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPF 79 (238)
T ss_dssp EEEEEEEEET-TE---E--EEEEECSSEEEEEE--SSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEE
T ss_pred EEECCEEECC-CC---C--EEEEEECCEEEEEC--CCCCEEEEHHHEEEEEECCCCCCCEEEEEEEECCHHHCCCCCCCE
T ss_conf 9967548768-98---3--68999668289988--850137794542278976679976499999846823159825860
Q ss_pred -EEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf -0277786222588527986789995679999999---9----9999999999999998610148986689963000457
Q 001503 757 -DVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRE---R----ARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPL 828 (1065)
Q Consensus 757 -dvQf~~e~~~~~~~~~~~r~~~~d~de~~~eq~e---~----~~~~~ln~~f~~f~~~v~~~~~~~~~~~~~~~~~~p~ 828 (1065)
++|||++ .++..+++. +++++++...+ + ....-+.+.|++++.+. +..|+ +|+.|+
T Consensus 80 ~v~qf~~~-e~~~~~l~~------~~e~~~~~~~~~l~~~~~~~~~~~~~~~~k~l~~~k------v~~p~---~f~~~~ 143 (238)
T d2gcla1 80 LVLQFQKD-EETEVQLNL------EDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRR------VIVPG---EYKSKY 143 (238)
T ss_dssp EEEEEETT-CEEEEECCC------CHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCC------EECCC---SCCCTT
T ss_pred EEEEECCC-CCCEEEECC------CHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCE------ECCCC---CCCCCC
T ss_conf 89998068-873778648------868976542000233305608899999999872857------53873---335778
Q ss_pred CCCCEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCEEEEEEEEECC---CCCCEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf 7760321225731443208553033113781799808455999985148---8731669999734998917993334888
Q 001503 829 RDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGL---GQKNFDMTIVFKDFKKDVLRIDSIPSSS 905 (1065)
Q Consensus 829 ~~l~f~G~~~~~~~~l~pt~~clv~l~e~P~~vi~l~eie~v~feRv~~---~~k~FD~~~v~Kd~~~~~~~i~~I~~~~ 905 (1065)
+++||.|++++++++||||.+||++++ +|+++|+++||+.|+||||++ .+|||||+|++|| ++++++|++||+++
T Consensus 144 ~~~~v~~~~~~~~G~L~pl~~~llf~~-KP~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~-~~~~~~fs~I~~~e 221 (238)
T d2gcla1 144 DQCAVSCSFKANEGYLYPLDNAFFFLT-KPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEE 221 (238)
T ss_dssp SCSCEEEEETTEEEEEEECSSEEEEES-SSCEEEEGGGEEEEEEEC--------CEEEEEEEEST-TCCEEEEEEEEGGG
T ss_pred CCCEEEEEECCCCEEEEECCCEEEEEC-CCCEEEEEHHEEEEEEEEECCCCCCCCEEEEEEEEEC-CCCCEEEECCCHHH
T ss_conf 861288761563079997167279803-7759999003869999963277532316669999947-97448991618899
Q ss_pred HHHHHHHHHHCCCEEE
Q ss_conf 4779998520693145
Q 001503 906 LDSIKEWLDTTDIKYY 921 (1065)
Q Consensus 906 l~~ik~wl~~~~i~~~ 921 (1065)
++.|++||++++|++.
T Consensus 222 ~~~i~~~l~~~~ikik 237 (238)
T d2gcla1 222 QQLLEQFLKSKNLRVK 237 (238)
T ss_dssp HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 8889999997798135
|
| >d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]} | Back information, alignment and structure |
|---|
| >d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal) domain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|