Citrus Sinensis ID: 001507
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1065 | 2.2.26 [Sep-21-2011] | |||||||
| O81016 | 1420 | ABC transporter G family | yes | no | 0.993 | 0.745 | 0.810 | 0.0 | |
| Q8GU87 | 1426 | Pleiotropic drug resistan | yes | no | 0.992 | 0.741 | 0.762 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.987 | 0.728 | 0.638 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.989 | 0.726 | 0.632 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.984 | 0.719 | 0.635 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.990 | 0.720 | 0.628 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.719 | 0.634 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.731 | 0.623 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.988 | 0.730 | 0.628 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.989 | 0.717 | 0.619 | 0.0 |
| >sp|O81016|AB32G_ARATH ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1785 bits (4622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1059 (81%), Positives = 963/1059 (90%), Gaps = 1/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGKTTLLLALAGRLG +L
Sbjct: 130 MAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG KYDM+ EL
Sbjct: 190 QTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVGDEM+KGISG
Sbjct: 250 ARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTTVISLLQP+P
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVTSKKDQ+QYW
Sbjct: 370 ETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+YG K+SELLK
Sbjct: 430 SVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
+F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +YLG+LYFSMV
Sbjct: 490 INFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES WVAVTYY
Sbjct: 550 IILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYT 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLVVM LGGFII
Sbjct: 610 IGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+L++RSLF
Sbjct: 670 SRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLFSG 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
+YWYWIGV A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++RKG+ V+EL
Sbjct: 730 NYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKRKGDEFVVEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LEDRLQLLVN+
Sbjct: 790 REYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNI 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQETFARISGYCE
Sbjct: 850 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGAL+GLPG++G
Sbjct: 910 QNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+NPAAWML+VT
Sbjct: 1030 SIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
+ EE RLGVDFAEIYR SNL QRN+EL+E LSKPS +K++ F T+YSQS +QF+ACL
Sbjct: 1090 ASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR
Sbjct: 1150 WKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKR 1188
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU87|PDR6_ORYSJ Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1632 bits (4226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 808/1059 (76%), Positives = 913/1059 (86%), Gaps = 2/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
MTEA LR LRIYRG R KL ILD++SGIIRPSR+TLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 137 MTEAFLRHLRIYRGGRVKLPILDNVSGIIRPSRMTLLLGPPSSGKTTLLLALAGRLGPGL 196
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+VSG ITYNGH EFVP RTSAYVSQQDW +EMTVRETL+FAG+CQGVG KYDM+ EL
Sbjct: 197 KVSGNITYNGHHLNEFVPQRTSAYVSQQDWHASEMTVRETLEFAGRCQGVGIKYDMLVEL 256
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
RREK GIKPDEDLD+FMK+ AL G++TSLV EYIMK+ GLD CADT+VGDEM+KGISG
Sbjct: 257 LRREKNEGIKPDEDLDVFMKALALEGKQTSLVAEYIMKVYGLDICADTIVGDEMIKGISG 316
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVG ARVLFMDEIS GLDS+TTYQIIKYL+HST ALDGTT+ISLLQPAP
Sbjct: 317 GQKKRLTTGELLVGSARVLFMDEISTGLDSATTYQIIKYLRHSTHALDGTTIISLLQPAP 376
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVIL+SEGQIVYQGPR +DFFA MGF CP+RKNVADFLQEV SKKDQ+QYW
Sbjct: 377 ETYELFDDVILISEGQIVYQGPREYAVDFFAGMGFRCPERKNVADFLQEVLSKKDQQQYW 436
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
+ PY+Y+S KFAEAF ++ GK L +ELAVP++R NHPAALSTS YG +R ELLK
Sbjct: 437 CHYDYPYQYVSVSKFAEAFKTFVIGKRLHDELAVPYNRHRNHPAALSTSNYGVRRLELLK 496
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
++F WQ LLMKRNSFIYVFKFIQLL+VALITMTVFFR+TMH ++DDG +YLGALYF++V
Sbjct: 497 SNFQWQHLLMKRNSFIYVFKFIQLLLVALITMTVFFRSTMHRDSVDDGIIYLGALYFAIV 556
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
+ILFNGFTEVS+LV KLP+LYKHRDLHFYP W YT+PSW LSIPTSLIESG WV VTYYV
Sbjct: 557 MILFNGFTEVSLLVTKLPILYKHRDLHFYPPWAYTLPSWLLSIPTSLIESGMWVLVTYYV 616
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
+GYDP R Q LL FFLHQ S+ LFRV+ SLGRNMIVANTFGSFA+LVVM LGGFII
Sbjct: 617 VGYDPQFTRCLGQFLLLFFLHQTSLALFRVMASLGRNMIVANTFGSFALLVVMILGGFII 676
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPES 600
+++SIP WWIWG+W+SP+MYAQNA SVNEFLGHSW ++ N N +LGEAIL LF E
Sbjct: 677 TKESIPAWWIWGYWISPMMYAQNAISVNEFLGHSWSQQFANQNITLGEAILTGYGLFKEK 736
Query: 601 YWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELR 660
YW+WIGVGA+ GY ++ N LFT FL+ LNP+G QAVVSK ++Q R RRK + +ELR
Sbjct: 737 YWFWIGVGALFGYAIVLNFLFTLFLTLLNPIGNIQAVVSKDDIQHRAPRRKNGKLALELR 796
Query: 661 EYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
YL S+SLNG K QKGMVLPFQPLSM F NINY+VDVP ELK +G++EDRLQLL++V
Sbjct: 797 SYLH-SASLNGHNLKDQKGMVLPFQPLSMCFKNINYYVDVPAELKSQGIVEDRLQLLIDV 855
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG+IEG I ISGYPK QETF RISGYCE
Sbjct: 856 TGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGLIEGSITISGYPKNQETFTRISGYCE 915
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QND+HSP LTV+ESLL+SA LRLPS +++ T+R FVEEVMELVEL +LSGAL+GLPG+NG
Sbjct: 916 QNDVHSPCLTVIESLLYSACLRLPSHVDVNTRRVFVEEVMELVELNALSGALVGLPGVNG 975
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 976 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQP 1035
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGG+LIYAGPLGSKS L+++FEA+ GVPKIR GYNPAAWMLEVT
Sbjct: 1036 SIDIFESFDELLFMKRGGQLIYAGPLGSKSRNLVEFFEAIPGVPKIRDGYNPAAWMLEVT 1095
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S E LGVDFAE YR+S LFQ+ +E+V+ LS+P SK+L F+TKYSQ F Q+ ACL
Sbjct: 1096 STQMEQILGVDFAEYYRQSKLFQQTQEMVDILSRPRRESKELTFATKYSQPFFAQYAACL 1155
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAVRFFYTV+ISLM G+ICWKFG++R
Sbjct: 1156 WKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKFGSRR 1194
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1443 bits (3736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/1064 (63%), Positives = 842/1064 (79%), Gaps = 12/1064 (1%)
Query: 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG 64
+L +RI + ++IL D+SGIIRP R++LLLGPP SGKT+LLLALAG+L L+VSG
Sbjct: 153 VLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSG 212
Query: 65 KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 124
++TYNGH EFVP RTSAY+ Q D + EMTVRETL F+ +CQGVG++YDM+TEL+RRE
Sbjct: 213 RVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRRE 272
Query: 125 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 184
K A IKPD D+D++MK+ ++ GQ+ S+V +YI+KILGL+ CADT+VGD M++GISGGQKK
Sbjct: 273 KEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQKK 331
Query: 185 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244
R+TTGE+LVGPA+ LFMDEIS GLDSSTTYQI+ L+ S L GT +I+LLQPAPE Y+
Sbjct: 332 RVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYD 391
Query: 245 LFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPY 304
LFDD++LLSEGQIVYQGPR ++L+FF +MGF CP+RK VADFLQEVTS+KDQ QYW
Sbjct: 392 LFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRD 451
Query: 305 LPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFN 364
PYRYIS F+EAF +H G+NL EL VPFDR NHPAAL+TS+YG + EL K F+
Sbjct: 452 EPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACFS 511
Query: 365 WQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF 424
+ LLMKRNSF+Y+FK +QL+I+ I MTVF RT MH ++++DG ++LGA++ +V LF
Sbjct: 512 REWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLF 571
Query: 425 NGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYD 484
NGF E++M +AKLP+ YK RDL FYPSW Y +P+W L IP S +E W+ +TYYV+G+D
Sbjct: 572 NGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFD 631
Query: 485 PNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDS 544
PN+ RF R +L + QM+ GLFR++ +LGR M+VA+TFGSFA L+++ LGGF+ISR++
Sbjct: 632 PNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISREN 691
Query: 545 IPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNSNFSLGEAILRQRSLFPESYW 602
I KWWIWG+W SPLMYAQNA +VNEFLGHSW+K SN +LG +L+ R +F ++ W
Sbjct: 692 IKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRGIFVDANW 751
Query: 603 YWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV-VIELRE 661
YWIGVGA+LGY +LFN LF FL +L+PLGK QAVVS++EL+E+ R GENV ++ L
Sbjct: 752 YWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGT 811
Query: 662 YLQRSSS--------LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRL 713
Q S S + G +++GMVLPF PLS+ F NI Y VD+P E+K +GV EDRL
Sbjct: 812 DSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRL 871
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISGYPK+QETFAR
Sbjct: 872 LLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFAR 931
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
I+GYCEQNDIHSP +TV ESLL+SAWLRLPSE++ E ++ FVEEVMELVELTSL GAL+G
Sbjct: 932 IAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVG 991
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
LPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+V
Sbjct: 992 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1051
Query: 894 CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAA 953
CTIHQPSIDIFE+FDEL MKRGGE IY GPLG SC LI YFE ++GV KI+ GYNPA
Sbjct: 1052 CTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPAT 1111
Query: 954 WMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFAN 1013
WMLEVT+ +E LG++FAE+YR S+L+QRN+ L+ LS P P S L+F T++SQ F
Sbjct: 1112 WMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFT 1171
Query: 1014 QFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
Q +ACL KQ+ SYWRNP YTA R F+T VI+L+ G+I G K
Sbjct: 1172 QCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKK 1215
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1428 bits (3696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1068 (63%), Positives = 836/1068 (78%), Gaps = 14/1068 (1%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV 62
EA+ L I + +T+L D+SGII+P R+TLLLGPP SGKTTLLLALAG+L L+V
Sbjct: 155 EAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGKLDKDLKV 214
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
SGK+TYNGHG EFVP RT+AY+SQ D + EMTVRETL F+ +CQGVG++Y+M+TELAR
Sbjct: 215 SGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGTRYEMLTELAR 274
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
REK A IKPD D+DI+MK+ A+GGQ++S+V +YI+KILGLD CADT+VG+EML+GISGGQ
Sbjct: 275 REKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDICADTVVGNEMLRGISGGQ 334
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
+KR+TTGE+LVGPAR LFMDEIS GLDSSTTYQI+ L+ + L GT VISLLQPAPE
Sbjct: 335 RKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILGGTAVISLLQPAPET 394
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
Y LFDD+ILLS+GQ+VYQGPR VL+FF MGF CP RK VADFLQEVTS+KDQ QYW
Sbjct: 395 YNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQEVTSRKDQGQYWCR 454
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PYR++ +FA+AF S+H G+++ EL+ PFDR +HPAAL+TSKYG R ELLK +
Sbjct: 455 RDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALATSKYGVSRKELLKAT 514
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
+ +LLLMKRN+F+Y+FK + L ++ALI MT FFRT+M H D G +YLGALYF++ +
Sbjct: 515 IDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR-DYGMIYLGALYFALDTV 573
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+FNGF E++M V KLPV +K RDL F+P+W YTIPSW L IP + +E G +V +TYYVIG
Sbjct: 574 MFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFITYYVIG 633
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+DP+V RF +Q LL L+QMS LFR I +GR+M+V++TFG ++L ALGGFI++R
Sbjct: 634 FDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAALGGFILAR 693
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYW 602
+ KWWIWG+W+SPL YAQNA S NEFLGHSW + N +LG ++L+ R +F E+ W
Sbjct: 694 PDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKSRGIFTEAKW 753
Query: 603 YWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVV------ 656
YWIG+GA+LGYTLLFN L+T LS L+P A +S+ L+E+ GE V
Sbjct: 754 YWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHANLTGEVVEGQKDTK 813
Query: 657 -----IELREYLQRSSSLNG--KYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 709
+EL ++S +N +KGMVLPF PLS++F ++ Y VD+P +K +G+
Sbjct: 814 SRKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGIT 873
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
EDRL LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISGYPK+QE
Sbjct: 874 EDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQE 933
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
TFARISGYCEQNDIHSP +TV ESL+FSAWLRLPSE++ E ++ F+EEVM+LVELTSL G
Sbjct: 934 TFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRG 993
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
AL+GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN VNTG
Sbjct: 994 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTG 1053
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 949
RT+VCTIHQPSIDIFE+FDEL MKRGGE IY GP+G S +LI+YFE ++GV +I+ GY
Sbjct: 1054 RTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGY 1113
Query: 950 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQ 1009
NPA WMLEVTS +E LGVDF+EIYR+S L+QRN+EL+E LS P P S LNF T+YS+
Sbjct: 1114 NPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSR 1173
Query: 1010 SFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
SF Q LACL KQN SYWRNP YTAVR +T+VI+LM G++ W G +
Sbjct: 1174 SFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTR 1221
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1408 bits (3645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/1063 (63%), Positives = 837/1063 (78%), Gaps = 14/1063 (1%)
Query: 9 LRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 68
L I + + +L D+SGII+P R+TLLLGPP SGKTTLLLALAGRLG L+ SGK+TY
Sbjct: 167 LGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTY 226
Query: 69 NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 128
NGHG +EFVP RT+AY+SQ D + EMTVRETL F+ +CQGVGS++DM+TEL+RREK A
Sbjct: 227 NGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAAN 286
Query: 129 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 188
IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+ CADT+VGDEML+GISGGQ+KR+TT
Sbjct: 287 IKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTT 346
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248
GE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ + L GT VISLLQPAPE Y LFDD
Sbjct: 347 GEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDD 406
Query: 249 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYR 308
+ILLS+GQIVYQGPR VL+FF SMGF CP RK VADFLQEVTSKKDQ QYW+ PYR
Sbjct: 407 IILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYR 466
Query: 309 YISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 368
+++ +F AF S+HTG+ ++ ELAVPFD+ +HPAAL+T++YG ELLK + + ++L
Sbjct: 467 FVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREIL 526
Query: 369 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFT 428
LMKRNSF+Y+F+ QL++V+LI MT+FFRT M ++ GG+Y+GAL+F +++I+FNGF+
Sbjct: 527 LMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFS 586
Query: 429 EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 488
E+++ V KLPV +K RDL FYP+W YTIPSW L IP + IE G +V +TYYVIG+D NV
Sbjct: 587 ELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVG 646
Query: 489 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKW 548
F +Q LL ++QM+ LFR IG RNMIVAN F SF +L+ M LGGFI++R+ + KW
Sbjct: 647 SFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKW 706
Query: 549 WIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNSNFSLGEAILRQRSLFPESYWYWIG 606
WIWG+W+SP+MYAQNA SVNE +GHSW+K + SN +LG +L+ R +FPE+ WYWIG
Sbjct: 707 WIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIG 766
Query: 607 VGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV-VIELREYLQR 665
GAM+G+T+LFNALFT L+YL P G + VS++EL+E+ GE V + L R
Sbjct: 767 FGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTR 826
Query: 666 SSSLNG-----------KYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQ 714
NG Q+GMVLPF PLS++F N+ Y VD+P E+K +GV +DRL+
Sbjct: 827 RPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLE 886
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEG I ISGYPK+QETFAR+
Sbjct: 887 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARV 946
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T++ F+EEVMELVEL SL AL+GL
Sbjct: 947 SGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGL 1006
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
PG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN VNTGRT+VC
Sbjct: 1007 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVC 1066
Query: 895 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAW 954
TIHQPSIDIFE+FDEL MKRGGE IYAGPLG S ELIKYFE++ GV KI+ GYNPA W
Sbjct: 1067 TIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATW 1126
Query: 955 MLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQ 1014
MLEVT+ +E LGVDF++IY++S L+QRN+ L++ LS+P+P S L F T+YSQS Q
Sbjct: 1127 MLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQ 1186
Query: 1015 FLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
+ACL KQNLSYWRNP Y AVRFF+T VI+L+ G+I W G K
Sbjct: 1187 CMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGK 1229
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1407 bits (3643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 671/1067 (62%), Positives = 835/1067 (78%), Gaps = 12/1067 (1%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV 62
E L I + + IL D+SGI++P R+TLLLGPP SGKTTLLLALAGRLG ++
Sbjct: 170 EGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPGSGKTTLLLALAGRLGKDIKF 229
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
SG++TYNGH ++FVP RT+AY+SQ D + EMTVRETL F+ +CQGVGS++DM+TEL+R
Sbjct: 230 SGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTELSR 289
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
REK A IKPD D+D FMK+ A+ GQ+T+L+ +YI+KILGLD CADT+VGD+M++GISGGQ
Sbjct: 290 REKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGLDICADTMVGDDMVRGISGGQ 349
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
+KR+TTGE+LVGPA LFMDEIS GLDSSTT+QI+K L+ + L GT VISLLQPAPE
Sbjct: 350 RKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQAIHILGGTAVISLLQPAPET 409
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
Y+LFDD+ILLS+GQIVYQGPR VL+FF MGF CP+RK VADFLQEVTS+KDQ+QYW
Sbjct: 410 YDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWMQ 469
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PYRY+ FA AF S+HTGK+++ ELA PFD+ NHPAAL+TS+YG ELLK +
Sbjct: 470 HDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNHPAALTTSRYGVSAMELLKAN 529
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
+ + LLMKRNSF+Y+F+ QL++V+ I MTVFFRT MH ++ DG +++GAL+FS+++I
Sbjct: 530 IDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHRDSVTDGVIFMGALFFSVMMI 589
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+FNG +E+ + + KLPV +K RDL F+P+W YTIPSW L IP S IE G +V ++YYVIG
Sbjct: 590 MFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKIPMSFIEVGGFVFMSYYVIG 649
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+DP+ RF +Q LL ++QM+ LFR +G RNMIVAN FGSF +L+ M LGGFI+ R
Sbjct: 650 FDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVANVFGSFMLLIFMVLGGFILVR 709
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN--SNFSLGEAILRQRSLFPES 600
+ + KWWIWG+W+SP+MYAQNA SVNEFLGHSWDK N SN +LG LR R +FPE+
Sbjct: 710 EKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLNNSLSNETLGVQALRSRGVFPEA 769
Query: 601 YWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIE-- 658
WYWIG GA+LG+ +LFN LFT L+YL P GK Q VS++EL+E+ G + ++
Sbjct: 770 KWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVSEEELKEKQANINGNVLDVDTM 829
Query: 659 -------LREYLQRSSSL-NGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 710
+ + + SS + + Q+GMVLPF PLS+ F NI Y VD+P E+K G++E
Sbjct: 830 ASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSLTFDNIKYSVDMPQEMKAHGIVE 889
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 770
DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEG+I ISGYPK+QET
Sbjct: 890 DRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQET 949
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
FAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T++ F+EEVMELVEL L A
Sbjct: 950 FARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDA 1009
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
L+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGR
Sbjct: 1010 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1069
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 950
T+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG +S ELIKYFE ++GV +I+ GYN
Sbjct: 1070 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQSSELIKYFEGIKGVSRIKDGYN 1129
Query: 951 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1010
PA WMLEV++ +E LGVDF +IYR+S LFQRN+ L++ LS P P S +L F TKYS S
Sbjct: 1130 PATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLS 1189
Query: 1011 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
F NQ LACL K +LSYWRNP Y A+R F+T VI+L+ G+I W G K
Sbjct: 1190 FLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGK 1236
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 675/1063 (63%), Positives = 836/1063 (78%), Gaps = 14/1063 (1%)
Query: 9 LRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 68
L I + + +L D+SGII+P R+TLLLGPP SGKTTLLLALAGRLG L+ SGK+TY
Sbjct: 167 LGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTY 226
Query: 69 NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 128
NGHG +EFVP RT+AY+SQ D + EMTVRETL F+ +CQGVGS++DM+TEL+RREK A
Sbjct: 227 NGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAAN 286
Query: 129 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 188
IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+ CADT+VGDEML+GISGGQ+KR+TT
Sbjct: 287 IKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTT 346
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248
GE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ + L GT VISLLQPAPE Y LFDD
Sbjct: 347 GEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDD 406
Query: 249 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYR 308
+ILLS+GQIVYQGPR VL+FF S GF CP RK VADFLQEVTSKKDQ QYW+ PYR
Sbjct: 407 IILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYR 466
Query: 309 YISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 368
+++ +F AF S+HTG+ ++ ELAVPFD+ +HPAAL+T++YG ELLK + + ++L
Sbjct: 467 FVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREIL 526
Query: 369 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFT 428
LMKRNSF+Y+F+ QL++V+LI MT+FFRT M ++ GG+Y+GAL+F +++I+FNGF+
Sbjct: 527 LMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFS 586
Query: 429 EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 488
E+++ V KLPV +K RDL FYP+W YTIPSW L IP + IE G +V +TYYVIG+D NV
Sbjct: 587 ELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVG 646
Query: 489 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKW 548
F +Q LL ++QM+ LFR IG RNMIVAN F SF +L+ M LGGFI++R+ + KW
Sbjct: 647 SFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKW 706
Query: 549 WIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNSNFSLGEAILRQRSLFPESYWYWIG 606
WIWG+W+SP+MYAQNA SVNE +GHSW+K + SN +LG +L+ R +FPE+ WYWIG
Sbjct: 707 WIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIG 766
Query: 607 VGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV-VIELREYLQR 665
GAM+G+T+LFNALFT L+YL P G + VS++EL+E+ GE V + L R
Sbjct: 767 FGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTR 826
Query: 666 SSSLNG-----------KYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQ 714
NG Q+GMVLPF PLS++F N+ Y VD+P E+K +GV +DRL+
Sbjct: 827 RPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLE 886
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEG I ISGYPK+QETFAR+
Sbjct: 887 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARV 946
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T++ F+EEVMELVEL SL AL+GL
Sbjct: 947 SGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGL 1006
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
PG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN VNTGRT+VC
Sbjct: 1007 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVC 1066
Query: 895 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAW 954
TIHQPSIDIFE+FDEL MKRGGE IYAGPLG S ELIKYFE++ GV KI+ GYNPA W
Sbjct: 1067 TIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATW 1126
Query: 955 MLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQ 1014
MLEVT+ +E LGVDF++IY++S L+QRN+ L++ LS+P+P S L F T+YSQS Q
Sbjct: 1127 MLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQ 1186
Query: 1015 FLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
+ACL KQNLSYWRNP Y AVRFF+T VI+L+ G+I W G K
Sbjct: 1187 CMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGK 1229
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1404 bits (3634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 658/1055 (62%), Positives = 825/1055 (78%), Gaps = 6/1055 (0%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV 62
E LL L I + +LTIL D+SGII+P R+TLLLGPPSSGKTTLLLALAG+L L+V
Sbjct: 158 ETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLALAGKLDPALKV 217
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
+GK++YNGH EFVP RT+AY+SQ D + EMTVRETL+F+ +CQGVGS+++M+ EL+R
Sbjct: 218 TGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSR 277
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
REK A IKPD D+DI+MK+ A GQ+ ++V +Y++KILGLD CADT+VGD+M++GISGGQ
Sbjct: 278 REKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQ 337
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
KKR+TTGE+LVGP++ LFMDEIS GLDSSTTY I+ L+ S + L GT VISLLQPAPE
Sbjct: 338 KKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPET 397
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
Y LFDD+ILLS+G IVYQGPR VL+FF SMGF CP+RK VADFLQEVTSKKDQ+QYWS
Sbjct: 398 YNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSK 457
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PYR+I+ +FAEA+ S+H G+ L +ELA PFD+ HPAAL+ KYG + ELLK
Sbjct: 458 RNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVC 517
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
+LLLMKRNSF+Y+FKF QL I+ALITMT+FFRT M T DDGG+Y GAL+F +++I
Sbjct: 518 TERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMI 577
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+FNG +E++M + KLPV YK RDL F+PSW Y IPSW L IP +L+E G WV +TYYVIG
Sbjct: 578 MFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIG 637
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+DPN+ RF +Q LL ++QM+ G+FR IG++GR M VA+TFGSFA+L+ ALGGF++SR
Sbjct: 638 FDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSR 697
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYW 602
D + WWIWG+W+SP+MY+ N+ VNEF G W+ N +LG +++ R FPE+YW
Sbjct: 698 DDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYW 757
Query: 603 YWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREY 662
YWIGVGA++G+T++FN ++ L+YLNP K QAV+ ++ + GE V
Sbjct: 758 YWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLP----EDGENAENGE--VSSQITS 811
Query: 663 LQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGA 722
S++ +KGMVLPF+P S+ F ++ Y VD+P E+K++G EDRL LL V+GA
Sbjct: 812 TDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGA 871
Query: 723 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 782
FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK+QETFARISGYCEQND
Sbjct: 872 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQND 931
Query: 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 842
IHSP +TV ESL++SAWLRLP +++ +T++ FV+EVMELVEL L AL+GLPG+NGLST
Sbjct: 932 IHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLST 991
Query: 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 902
EQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSID
Sbjct: 992 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1051
Query: 903 IFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPV 962
IFE+FDEL MKRGG+ IY GPLG SC LIKYFE+ GV KI+ GYNPA WMLEVT+
Sbjct: 1052 IFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASA 1111
Query: 963 EESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQ 1022
+E LG+DF E+Y+ S+L++RN+ L+ L P P SK L+F T+YSQSF Q +ACL KQ
Sbjct: 1112 QEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQ 1171
Query: 1023 NLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
+ SYWRNP YTAVRF +T I+L+ G++ W G K
Sbjct: 1172 HWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTK 1206
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1400 bits (3624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/1058 (62%), Positives = 836/1058 (79%), Gaps = 5/1058 (0%)
Query: 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG 64
+L L + + ++IL D+SGII+P R+TLLLGPP +GKTTLLLALAG+L + L+V+G
Sbjct: 157 ILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTTLLLALAGKLDNTLKVTG 216
Query: 65 KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 124
+TYNGHG EFVP RTSAY+SQ D + EMTVRETL F+ +CQGVG++Y+M+TEL+RRE
Sbjct: 217 NVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRCQGVGTRYEMLTELSRRE 276
Query: 125 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 184
K A IKPD D+D++MK+ A+ GQ+ S+V +YI+KILGLD CADT+VGD M++GISGGQKK
Sbjct: 277 KEANIKPDPDVDVYMKAVAVEGQE-SVVTDYILKILGLDICADTMVGDGMIRGISGGQKK 335
Query: 185 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244
R+TTGE+LVGP++ LFMDEIS GLDSSTT+QI+ L+ S L GT +I+LLQPAPE Y+
Sbjct: 336 RVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHILGGTALIALLQPAPETYD 395
Query: 245 LFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPY 304
LFDD++LLS+GQIVYQGPR +VL+FF SMGF CP+RK VADFLQEVTS+KDQ+QYW
Sbjct: 396 LFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFLQEVTSRKDQQQYWVREN 455
Query: 305 LPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFN 364
PYR++ +F+EAF S+H G L EEL+ PFDR NHPAAL+TSKYG + ELLK +
Sbjct: 456 EPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALTTSKYGISKMELLKACID 515
Query: 365 WQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF 424
+ LLMKRNSF+Y+FK +QL+++ALI MTVFFRT + ++D ++ GA++ +V LF
Sbjct: 516 REWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLEDATIFFGAMFLGLVTHLF 575
Query: 425 NGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYD 484
NGF E++M +AKLPV YK RDL FYP W Y +P+W L IP S +E G W+A+TYYVIG+D
Sbjct: 576 NGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISFVECGVWIAMTYYVIGFD 635
Query: 485 PNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDS 544
PNVVR R LL + Q++ GLFR++ ++GR+M+VA+TFG+FA LV++ LGGFII+R+
Sbjct: 636 PNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAFAQLVLLVLGGFIIAREK 695
Query: 545 IPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYW 604
I K+WIWG+W SPLMYAQNA +VNEFLGHSW+K + +LGE LR R +F + WYW
Sbjct: 696 IKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLGERFLRNRGIFVDKNWYW 755
Query: 605 IGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQ 664
IGVGA++GY +LFN LF FL +L+PLGK Q VS++ LQE++ R G NV + R
Sbjct: 756 IGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKEANRTGANVELATRGSAA 815
Query: 665 RSS----SLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVT 720
S + ++KGMVLPF PLS+ F N+ Y VD+P E+K GV ED+L LL V+
Sbjct: 816 TSDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSVDMPQEMKDRGVTEDKLLLLKGVS 875
Query: 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ 780
GAFRPGVLTAL+GVSG GKTTLMDVLAGRKTGG IEGDI ISGYPK QETFARISGYCEQ
Sbjct: 876 GAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQ 935
Query: 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 840
NDIHSP +TV ESLL+SAWLRLP+E++ + ++ FV+EVM+LVEL SL G+L+GLPG+ GL
Sbjct: 936 NDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGL 995
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900
STEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V+TGRT+VCTIHQPS
Sbjct: 996 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS 1055
Query: 901 IDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTS 960
IDIFE+FDEL MKRGGE IY GPLG +S LIKYFE+++GV KI+ YNPA WMLEVT+
Sbjct: 1056 IDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFESIDGVKKIKERYNPATWMLEVTT 1115
Query: 961 PVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACLR 1020
+E LG++FAE+YR S+L++RN++L++ LS P P SK L F+T++SQSF Q LACL
Sbjct: 1116 ISQEEILGLNFAEVYRNSDLYKRNKDLIKELSTPPPGSKDLFFATQFSQSFVMQCLACLW 1175
Query: 1021 KQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQ+ SYWRNP YTA R F+TVVI+L+ G+I W G KR
Sbjct: 1176 KQHKSYWRNPSYTATRLFFTVVIALIFGTIFWDLGKKR 1213
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 661/1067 (61%), Positives = 822/1067 (77%), Gaps = 13/1067 (1%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV 62
E L I + L IL D+SGII+P R+TLLLGPP SGKTT LLALAGRL L+
Sbjct: 175 EEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL-KDLKF 233
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
SG++TYNGH ++FVP RT+AY+SQ D + EMTVRETL F+ +CQGVGS++DM+TEL R
Sbjct: 234 SGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDMLTELTR 293
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
REK A IKPD D+D FMK+ A+ GQ+++L+ +YI+KILGL+ CADT+VGD+M++GISGGQ
Sbjct: 294 REKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRGISGGQ 353
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
+KR+TTGE+LVGPA FMDEIS GLDSSTT+QI+K L+ + L GT VISLLQPAPE
Sbjct: 354 RKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQPAPET 413
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
Y+LFDD+ILLS+G IVYQGPR +VL+FF MGF CP+RK VADFLQEVTS+KDQ+QYW+
Sbjct: 414 YDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQKQYWAQ 473
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PYRY+ +FA AF S+HTG++++ ELA PFD+ +HPAAL+TS+YG ELLK +
Sbjct: 474 HDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAMELLKAN 533
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
+ +LLL+KRNSF+Y+F+ IQL+ V+ + MTVFFRT MH ++ DG +++GAL+F++++I
Sbjct: 534 IDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFFAVMMI 593
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+ NG +E+ + + KLPV +K RDL F+P+W YTIPSW L P S IE G + ++YYVIG
Sbjct: 594 MLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMSYYVIG 653
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+DPNV RF +Q LL + QM+ LFR +G RN+IVAN FGSF +L+ M LGGFI++R
Sbjct: 654 FDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGGFILAR 713
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN--SNFSLGEAILRQRSLFPES 600
D + KWWIWG+W+SP+MYAQNA SVNEFLGHSWDK N SN +LG L R +FPE+
Sbjct: 714 DKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRGIFPEA 773
Query: 601 YWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELR 660
WYWIG GA+LG+ +LFN LFT L+YL P GK Q +S++EL+E+ G + ++
Sbjct: 774 KWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVLDVDTM 833
Query: 661 EYLQR----------SSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 710
S + Q+GMVLPF PLS+ F +I Y VD+P E+K G++E
Sbjct: 834 ASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVE 893
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 770
DRL+LL V+G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEG+I ISGYPK+QET
Sbjct: 894 DRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQET 953
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
FAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T++ F+EEVMELVEL L A
Sbjct: 954 FARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDA 1013
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
L+GLPG+NGLS EQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN VNTGR
Sbjct: 1014 LVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGR 1073
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 950
T+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG S ELIKYFE ++GV KI GYN
Sbjct: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYN 1133
Query: 951 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1010
PA WMLEVT+ +E L VDF +IYR+S LFQRN+ L++ LS P P S +L F T+YSQS
Sbjct: 1134 PATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQS 1193
Query: 1011 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
F Q LACL KQ+LSYWRNP Y A+R F+T VI+L+ G+I W G K
Sbjct: 1194 FLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGK 1240
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1065 | ||||||
| 224143447 | 1420 | predicted protein [Populus trichocarpa] | 0.993 | 0.745 | 0.869 | 0.0 | |
| 255549008 | 1235 | ATP-binding cassette transporter, putati | 0.975 | 0.841 | 0.856 | 0.0 | |
| 280967727 | 1427 | putative ABC transporter [Malus x domest | 0.993 | 0.741 | 0.838 | 0.0 | |
| 225445364 | 1421 | PREDICTED: ABC transporter G family memb | 0.993 | 0.744 | 0.848 | 0.0 | |
| 449443129 | 1420 | PREDICTED: ABC transporter G family memb | 0.993 | 0.745 | 0.833 | 0.0 | |
| 449523499 | 1420 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.993 | 0.745 | 0.832 | 0.0 | |
| 356511619 | 1418 | PREDICTED: ABC transporter G family memb | 0.992 | 0.745 | 0.837 | 0.0 | |
| 356563075 | 1418 | PREDICTED: ABC transporter G family memb | 0.992 | 0.745 | 0.835 | 0.0 | |
| 297822271 | 1420 | ATPDR4/PDR4 [Arabidopsis lyrata subsp. l | 0.993 | 0.745 | 0.813 | 0.0 | |
| 15225814 | 1420 | ABC transporter G family member 32 [Arab | 0.993 | 0.745 | 0.810 | 0.0 |
| >gi|224143447|ref|XP_002324959.1| predicted protein [Populus trichocarpa] gi|222866393|gb|EEF03524.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1875 bits (4858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 921/1059 (86%), Positives = 990/1059 (93%), Gaps = 1/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
MTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG+ L
Sbjct: 130 MTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGNDL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q+SGKITYNGH EFV PRTSAYVSQ DW VAEMTV+ETL+FAG CQGVGSKYDM+ EL
Sbjct: 190 QMSGKITYNGHSLNEFVAPRTSAYVSQHDWHVAEMTVKETLEFAGCCQGVGSKYDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGIKPDEDLDIFMKS ALGGQ+T+LVVEYIMKILGLD CADTLVGDEMLKGISG
Sbjct: 250 ARREKFAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICADTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HSTRALDGTTVISLLQPAP
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTRALDGTTVISLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDV+LL EGQIVYQGPR + LDFF+SMGFSCP+RKNVADFLQEV SKKDQEQYW
Sbjct: 370 ETYELFDDVMLLCEGQIVYQGPRDAALDFFSSMGFSCPERKNVADFLQEVISKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P PYRYI P KF EAFHS+ G++LSEELAVPFD+R+NHPAALSTSK+G K+SEL +
Sbjct: 430 SVPNRPYRYIPPRKFVEAFHSFLVGRSLSEELAVPFDKRYNHPAALSTSKFGVKQSELFR 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
FNWQ LLMKRNSFIYVFKFIQLL+VALITM+VFFR+TMH TI DGGL++G++YFSMV
Sbjct: 490 ICFNWQKLLMKRNSFIYVFKFIQLLLVALITMSVFFRSTMHRDTIYDGGLFVGSIYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPVLYKHRDL FYPSW YT+PSW LSIP SL+ESG WVAVTYYV
Sbjct: 550 IILFNGFTEVSMLVAKLPVLYKHRDLRFYPSWAYTLPSWVLSIPISLMESGLWVAVTYYV 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDPN+ RF RQ LLYFFLHQMSI LFRVIGSLGR+MIVANTFGSFAMLVVMALGG+II
Sbjct: 610 IGYDPNITRFFRQFLLYFFLHQMSIALFRVIGSLGRHMIVANTFGSFAMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAILRQRSLFPE 599
SRD IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDK+AG N++FSLGEA+LR RSLFPE
Sbjct: 670 SRDYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKRAGNNTDFSLGEALLRARSLFPE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
SYWYWIG+ A+LGYT+LFN LFTFFL+YLNPLGK QAVVSK+ELQERD+RRKGENVVIEL
Sbjct: 730 SYWYWIGIAALLGYTVLFNLLFTFFLAYLNPLGKHQAVVSKEELQERDKRRKGENVVIEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQ S SLNGKYFK +GMVLPFQPLSM+F NINYFVDVPVELKQ+G++EDRLQLLVNV
Sbjct: 790 REYLQHSGSLNGKYFKPRGMVLPFQPLSMSFSNINYFVDVPVELKQQGIVEDRLQLLVNV 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG+I+ISGYPK+QETFAR+SGYCE
Sbjct: 850 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGNIHISGYPKKQETFARVSGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QNDIHSP LTVLESLLFSAWLRLP+ + ++TQ+AFVEEVMELVELT LSGAL+GLPG+NG
Sbjct: 910 QNDIHSPCLTVLESLLFSAWLRLPTVVNMDTQQAFVEEVMELVELTPLSGALVGLPGVNG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFEAVEGVPKIR GYNPAAWMLEVT
Sbjct: 1030 SIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFEAVEGVPKIRHGYNPAAWMLEVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S EE+RLGVDFAEIYRRSNL QRNRELVE+LSKP+ S+K LNF TKY QSF +Q LACL
Sbjct: 1090 SSAEETRLGVDFAEIYRRSNLHQRNRELVENLSKPNSSAKDLNFPTKYCQSFFDQLLACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAVRFFYTV+ISLMLG+ICW+FG+KR
Sbjct: 1150 WKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGSKR 1188
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549008|ref|XP_002515560.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223545504|gb|EEF47009.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1859 bits (4816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 907/1059 (85%), Positives = 978/1059 (92%), Gaps = 20/1059 (1%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
MTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH L
Sbjct: 130 MTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHDL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+VSGKITYNGH EFV PRTSAYVSQQDW VAEMTVRETL+FAG+CQGVG K+DM+ EL
Sbjct: 190 KVSGKITYNGHRVNEFVAPRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVGFKFDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREKIAGIKP+EDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVGDEM KGISG
Sbjct: 250 ARREKIAGIKPEEDLDIFMKSLALGGQETSLVVEYIMKILGLDICADTLVGDEMRKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HST ALDGTT+ISLLQPAP
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTCALDGTTLISLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVILL EGQIVYQGPR +VLDFFA MGF CP+RKNVADFLQEVTSKKDQEQYW
Sbjct: 370 ETYELFDDVILLCEGQIVYQGPRDNVLDFFAYMGFRCPERKNVADFLQEVTSKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S PYRYI PGKF EAF SYHTGK+LS EL VPFD+R+NHPAALST ++G KRSELLK
Sbjct: 430 SVANRPYRYIPPGKFVEAFRSYHTGKSLSRELEVPFDKRYNHPAALSTCRFGMKRSELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
SFNWQ LLMKRNSFIYVFKFIQL IVALITM+VFFRTTMHH T+ DGGLY+G+LYFSMV
Sbjct: 490 ISFNWQKLLMKRNSFIYVFKFIQLFIVALITMSVFFRTTMHHNTVFDGGLYVGSLYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YTIP+W LSIPTSL+ESG WVAVTYYV
Sbjct: 550 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPAWVLSIPTSLMESGLWVAVTYYV 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
+GYDPN+ RF RQ LLYF LHQMSI LFRVIGSLGR+MIVANTFGSFAMLVVMALGG+II
Sbjct: 610 MGYDPNITRFFRQFLLYFSLHQMSISLFRVIGSLGRHMIVANTFGSFAMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SR+ IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDKK GN ++ SLGEA+L+ RSLFPE
Sbjct: 670 SREYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKFGNDTSISLGEALLKARSLFPE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
SYWYWIGVGA+LGY +LFN+LFT FL++LNPLG+QQ VVSK+ELQER++RRK
Sbjct: 730 SYWYWIGVGALLGYAVLFNSLFTLFLAHLNPLGRQQPVVSKEELQEREKRRK-------- 781
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
GK+FKQKGMVLPFQPLSM+F NINYFVDVP+ELKQ+G++E++LQLLVNV
Sbjct: 782 -----------GKHFKQKGMVLPFQPLSMSFSNINYFVDVPLELKQQGIVEEKLQLLVNV 830
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG+IYISGYPKRQETFARISGYCE
Sbjct: 831 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGNIYISGYPKRQETFARISGYCE 890
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QNDIHSPGLT+LESLLFSAWLRLPSE+++ETQ+AFVEEVMELVELT L+GAL+GLPG+NG
Sbjct: 891 QNDIHSPGLTLLESLLFSAWLRLPSEVDMETQQAFVEEVMELVELTPLAGALVGLPGVNG 950
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 951 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1010
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFEAVEGVPKIRPGYNPAAWMLEVT
Sbjct: 1011 SIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 1070
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S EE RLGVDFAEIYRRS+LFQ NRE++ESLSKPS ++K+LNF TKY+QSF QFLACL
Sbjct: 1071 SSSEEIRLGVDFAEIYRRSSLFQWNREMIESLSKPSNNTKELNFPTKYAQSFLEQFLACL 1130
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQ+LSYWRNPQYTAVRFFYTVVIS+MLG+ICWKFG+KR
Sbjct: 1131 WKQHLSYWRNPQYTAVRFFYTVVISIMLGTICWKFGSKR 1169
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|280967727|gb|ACZ98533.1| putative ABC transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 1833 bits (4747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1066 (83%), Positives = 971/1066 (91%), Gaps = 8/1066 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M EAL RQLRIYRG RSKLTILD++SGI+RPSRLTLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 130 MAEALFRQLRIYRGQRSKLTILDNISGIVRPSRLTLLLGPPSSGKTTLLLALAGRLGTGL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q+SG +TYNGHG EFVP RTSAYVSQQDW VAEMTVRETL+FAG+CQGVG+KYDM+ EL
Sbjct: 190 QMSGNVTYNGHGLSEFVPQRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVGTKYDMLVEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGI PDEDLDIFMKS ALGG++TSLVVEYIMKILGLD CADTLVGDEMLKGISG
Sbjct: 250 ARREKCAGIIPDEDLDIFMKSLALGGKETSLVVEYIMKILGLDICADTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEIS GLDSSTTYQIIKYL+HSTRALD TTVISLLQPAP
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISTGLDSSTTYQIIKYLRHSTRALDATTVISLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVILL EGQIVYQGPR + LDFF+ MGF CP RKNVADFLQEV SKKDQEQYW
Sbjct: 370 ETYELFDDVILLCEGQIVYQGPRETALDFFSYMGFRCPLRKNVADFLQEVISKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
SNP LPYRY+ P KF +A+ + GK LSEEL VPFD+R+NHPAAL+TS YG KR ELLK
Sbjct: 430 SNPDLPYRYVPPAKFVDAYRLFQAGKTLSEELDVPFDKRYNHPAALATSLYGVKRCELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
TS+NWQLLLMKRN+FIY+FKFIQLL VA++TM+VFFR+T+HH TIDDGGLYLGALYFSMV
Sbjct: 490 TSYNWQLLLMKRNAFIYIFKFIQLLFVAMVTMSVFFRSTLHHNTIDDGGLYLGALYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGF EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS+P S IESGFWVA+TYYV
Sbjct: 550 IILFNGFMEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSVPNSFIESGFWVAITYYV 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IG+DP++ RF Q L+YF LHQMSI LFR++GSLGRNMIVANTFGSFAMLVVMALGG+II
Sbjct: 610 IGFDPSITRFCGQFLIYFLLHQMSIALFRLMGSLGRNMIVANTFGSFAMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPES 600
S+D IPKWWIWGFW SPLMYAQNAASVNEFLGH WDK+ GN LGEA+LR RSLFP+S
Sbjct: 670 SKDRIPKWWIWGFWFSPLMYAQNAASVNEFLGHKWDKRIGNETIPLGEALLRARSLFPQS 729
Query: 601 YWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELR 660
YW+WIG GA+LGYT+LFN LFTFFL+YLNPLGK+QAVV+K+ELQER+RRRKGE VVIELR
Sbjct: 730 YWFWIGAGALLGYTILFNMLFTFFLAYLNPLGKRQAVVTKEELQERERRRKGETVVIELR 789
Query: 661 EYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPV--------ELKQEGVLEDR 712
+YLQ S SLN KYFKQ+GMVLPFQ LSM+F NINY+VDVP+ ELKQ+G+ E++
Sbjct: 790 QYLQHSESLNAKYFKQRGMVLPFQQLSMSFSNINYYVDVPLFLIQVRLQELKQQGIQEEK 849
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 772
LQLL NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEG I+ISGYPKRQETFA
Sbjct: 850 LQLLSNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGSIHISGYPKRQETFA 909
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
RISGYCEQ+DIHSP LTVLESLLFS WLRLPS++ELE QRAFVEEVMELVELT LSGAL+
Sbjct: 910 RISGYCEQSDIHSPCLTVLESLLFSVWLRLPSDVELEIQRAFVEEVMELVELTPLSGALV 969
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGRTI
Sbjct: 970 GLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTI 1029
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPA 952
VCTIHQPSIDIFESFDELLF+KRGGELIYAGPLG KSCELIKYFEAVEGV KIRPGYNPA
Sbjct: 1030 VCTIHQPSIDIFESFDELLFLKRGGELIYAGPLGPKSCELIKYFEAVEGVEKIRPGYNPA 1089
Query: 953 AWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFA 1012
WML+VTS VEESRLGVDFAE+YR SNLF+ N+ELVE LSKPS +SK+LNF TKYSQSF
Sbjct: 1090 TWMLDVTSTVEESRLGVDFAEVYRSSNLFRHNKELVEILSKPSANSKELNFPTKYSQSFV 1149
Query: 1013 NQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
QFL CL KQNLSYWRNPQYTAVRFFYTV+ISLMLG+ICW+FGAKR
Sbjct: 1150 EQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKR 1195
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445364|ref|XP_002284885.1| PREDICTED: ABC transporter G family member 32 [Vitis vinifera] gi|297738886|emb|CBI28131.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1827 bits (4733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 899/1060 (84%), Positives = 972/1060 (91%), Gaps = 2/1060 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M+EALLR+LRIY+G + KLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 130 MSEALLRKLRIYKGMQKKLTILDDISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGSDL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+VSG+ITYNGH EFVP RTSAYVSQ DW VAEMTVRETL+F+G+CQGVG KYDM+ EL
Sbjct: 190 KVSGRITYNGHNLNEFVPQRTSAYVSQYDWHVAEMTVRETLEFSGRCQGVGFKYDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGI PDEDLDIF+K+ ALGGQ+TSLVVEYI+KILGLD CADTLVGDEMLKGISG
Sbjct: 250 ARREKAAGIIPDEDLDIFIKALALGGQETSLVVEYILKILGLDICADTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPA+VLFMDEIS GLDSSTTYQIIKYL+HST AL GTT++SLLQPAP
Sbjct: 310 GQKKRLTTGELLVGPAKVLFMDEISTGLDSSTTYQIIKYLRHSTCALGGTTIVSLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDV+LL EGQIVYQGPR + LDFFA MGFSCP+RKNVADFLQEV SKKDQEQYW
Sbjct: 370 ETYELFDDVMLLCEGQIVYQGPRDAALDFFAYMGFSCPERKNVADFLQEVVSKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S PYRYI KFAEAF SY G+NL EEL VPFDRR+NHPAALSTS YG KRSELLK
Sbjct: 430 SVLDRPYRYIPVAKFAEAFRSYRAGRNLYEELEVPFDRRYNHPAALSTSSYGVKRSELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
TSF WQ LLMKRNSFIYVFKFIQLL VALITMTVFFRTTMHH T+DDGGLYLGA+YFSMV
Sbjct: 490 TSFYWQKLLMKRNSFIYVFKFIQLLFVALITMTVFFRTTMHHHTVDDGGLYLGAMYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPVLYKHRDLHFYP WVYT+PSW LSIPTSLIESGFWVAVTYYV
Sbjct: 550 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPCWVYTLPSWVLSIPTSLIESGFWVAVTYYV 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
+GYDP + RF +Q L++FFLHQMSI LFRV+GSLGRNMIVANTFGSFAMLVVMALGG+II
Sbjct: 610 VGYDPAITRFFQQFLIFFFLHQMSIALFRVMGSLGRNMIVANTFGSFAMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRDSIP WW+WGFW SPLMYAQNAASVNEFLGHSWDK+ N +NFSLGE +LR RSLFPE
Sbjct: 670 SRDSIPSWWVWGFWFSPLMYAQNAASVNEFLGHSWDKRPRNDTNFSLGEEVLRARSLFPE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
SYWYWIGVGA+ GYT+LFN LFT FL+YLNPLGK+QAVVSK+EL+++D RR GE VVIEL
Sbjct: 730 SYWYWIGVGALFGYTVLFNILFTVFLTYLNPLGKRQAVVSKEELKDKDMRRNGETVVIEL 789
Query: 660 REYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVN 718
R+YLQ S S+ K FK QKGMVLPFQPLSM F NINYFVDVP+ELKQ+G++EDRLQLLVN
Sbjct: 790 RQYLQHSDSVAEKKFKQQKGMVLPFQPLSMCFKNINYFVDVPLELKQQGIVEDRLQLLVN 849
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 778
VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPK+QETFARISGYC
Sbjct: 850 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKKQETFARISGYC 909
Query: 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
EQ+DIHSP LTVLESLLFSAWLRLPS+++LETQRAFVEEVMELVELT LSGAL+GLPGI+
Sbjct: 910 EQSDIHSPCLTVLESLLFSAWLRLPSDVDLETQRAFVEEVMELVELTQLSGALVGLPGID 969
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ
Sbjct: 970 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1029
Query: 899 PSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEV 958
PSIDIFESFDELLFMKRGGELIYAG LG KSCELI++FEAVEGVPKIRPGYNPAAWMLEV
Sbjct: 1030 PSIDIFESFDELLFMKRGGELIYAGRLGPKSCELIQFFEAVEGVPKIRPGYNPAAWMLEV 1089
Query: 959 TSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLAC 1018
S EE+RLGVDFA++YRRSNLFQRN+ +VE LSKPS SK+LNF TKYSQSF +QFLAC
Sbjct: 1090 ASSAEETRLGVDFADVYRRSNLFQRNKLIVERLSKPSSDSKELNFPTKYSQSFLDQFLAC 1149
Query: 1019 LRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
L KQNLSYWRNPQYTAVRFFYTV+ISLM G+ICW FG+KR
Sbjct: 1150 LWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWGFGSKR 1189
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443129|ref|XP_004139333.1| PREDICTED: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1818 bits (4708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1059 (83%), Positives = 971/1059 (91%), Gaps = 1/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 130 MMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGSDL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG KYDM+ EL
Sbjct: 190 QQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVGFKYDMLMEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVGDEMLKGISG
Sbjct: 250 ARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TTV+SLLQPAP
Sbjct: 310 GQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTTVVSLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV SKKDQEQYW
Sbjct: 370 ETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVISKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+YG KR ELLK
Sbjct: 430 SVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQYGVKRLELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
TSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLYLGALYFS V
Sbjct: 490 TSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLYLGALYFSTV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG WV VTYYV
Sbjct: 550 IILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESGIWVVVTYYV 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLVVMALGG+II
Sbjct: 610 IGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAILRQRSLFPE 599
SRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++L+ RSLF E
Sbjct: 670 SRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESLLKARSLFSE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
SYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RRKGE VIEL
Sbjct: 730 SYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRRKGETTVIEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
R YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E+RLQLLVNV
Sbjct: 790 RHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTEERLQLLVNV 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+TFAR+SGYCE
Sbjct: 850 SGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDTFARVSGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGAL+GLPG++G
Sbjct: 910 QTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGALVGLPGVDG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFEAVEGV KI+ GYNPAAWMLEVT
Sbjct: 1030 SIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFEAVEGVQKIKAGYNPAAWMLEVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S VEESRLGVDFAE+YRRS LFQRN +LVE+LS+P +SK+L+F TKYSQS NQFLACL
Sbjct: 1090 SAVEESRLGVDFAEVYRRSTLFQRNLDLVETLSRPISNSKELSFPTKYSQSSFNQFLACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAV+FFYTV+ISLMLG+ICWKFGAKR
Sbjct: 1150 WKQNLSYWRNPQYTAVKFFYTVIISLMLGTICWKFGAKR 1188
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523499|ref|XP_004168761.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1815 bits (4701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1059 (83%), Positives = 970/1059 (91%), Gaps = 1/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 130 MMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGSDL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG KYDM+ EL
Sbjct: 190 QQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVGFKYDMLMEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVGDEMLKGISG
Sbjct: 250 ARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TTV+SLLQPAP
Sbjct: 310 GQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTTVVSLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV SKKDQEQYW
Sbjct: 370 ETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVISKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+YG KR ELLK
Sbjct: 430 SVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQYGVKRLELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
TSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLYLGALYFS V
Sbjct: 490 TSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLYLGALYFSTV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG WV VTYYV
Sbjct: 550 IILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESGIWVVVTYYV 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLVVMALGG+II
Sbjct: 610 IGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAILRQRSLFPE 599
SRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++L+ RSL E
Sbjct: 670 SRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESLLKARSLVSE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
SYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RRKGE VIEL
Sbjct: 730 SYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRRKGETTVIEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
R YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E+RLQLLVNV
Sbjct: 790 RHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTEERLQLLVNV 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+TFAR+SGYCE
Sbjct: 850 SGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDTFARVSGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGAL+GLPG++G
Sbjct: 910 QTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGALVGLPGVDG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFEAVEGV KI+ GYNPAAWMLEVT
Sbjct: 1030 SIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFEAVEGVQKIKAGYNPAAWMLEVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S VEESRLGVDFAE+YRRS LFQRN +LVE+LS+P +SK+L+F TKYSQS NQFLACL
Sbjct: 1090 SAVEESRLGVDFAEVYRRSTLFQRNLDLVETLSRPISNSKELSFPTKYSQSSFNQFLACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAV+FFYTV+ISLMLG+ICWKFGAKR
Sbjct: 1150 WKQNLSYWRNPQYTAVKFFYTVIISLMLGTICWKFGAKR 1188
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511619|ref|XP_003524521.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1801 bits (4664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1059 (83%), Positives = 970/1059 (91%), Gaps = 2/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
MTEALLRQLRIYR RSKLTIL D+SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 130 MTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q+SG ITYNGH KEFVP RTSAYVSQQDW VAEMTVRETL FAG+CQGVG K+DM+ EL
Sbjct: 190 QMSGDITYNGHSLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVGFKFDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVGDEMLKGISG
Sbjct: 250 ARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALD TT++SLLQPAP
Sbjct: 310 GQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATTIVSLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVTSKKDQEQYW
Sbjct: 370 ETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVTSKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T YG KR ELLK
Sbjct: 430 SILDRPYRYVPVGKFAEAFSLYREGRILSEKLNIPFDRRYNHPAALATLSYGAKRLELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
T++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLYLGALYFSMV
Sbjct: 490 TNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGALYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G WVAV+YY
Sbjct: 550 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAGCWVAVSYYA 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLVVMALGG+II
Sbjct: 610 SGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRD IP WW+WGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+L++RSL+ E
Sbjct: 670 SRDRIPVWWVWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAVLKERSLYAE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
SYWYWIG+GAM+GYT+LFN LFT FL+ LNPLG+QQAVVSK ELQER++RRKGE+VVIEL
Sbjct: 730 SYWYWIGLGAMVGYTILFNILFTIFLANLNPLGRQQAVVSKDELQEREKRRKGESVVIEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQRS+S +GK+FKQ+GMVLPFQPL+MAF NINY+VDVP+ELKQ+G++ED+LQLLVNV
Sbjct: 790 REYLQRSAS-SGKHFKQRGMVLPFQPLAMAFSNINYYVDVPLELKQQGIVEDKLQLLVNV 848
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++FARISGYCE
Sbjct: 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDSFARISGYCE 908
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q D+HSP LTV ESLLFSAWLRL S+++LETQ+AFVEEVMELVELT LSGAL+GLPGI+G
Sbjct: 909 QTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEVMELVELTPLSGALVGLPGIDG 968
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFEA+EGVPKIR GYNPA WMLE T
Sbjct: 1029 SIDIFESFDELLFMKRGGELIYAGPLGPKSCELISYFEAIEGVPKIRSGYNPATWMLEAT 1088
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S VEE+RLGVDFAEIYR+S+L+Q N ELVE LSKPS +SK+L+F TKY +S QFL CL
Sbjct: 1089 SSVEENRLGVDFAEIYRKSSLYQYNLELVERLSKPSGNSKELHFPTKYCRSSFEQFLTCL 1148
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNL YWRNPQYTAVRFFYTV+ISLMLGSICW+FGAKR
Sbjct: 1149 WKQNLCYWRNPQYTAVRFFYTVIISLMLGSICWRFGAKR 1187
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563075|ref|XP_003549791.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1797 bits (4654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 885/1059 (83%), Positives = 970/1059 (91%), Gaps = 2/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
MTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLALAGRLG L
Sbjct: 130 MTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLALAGRLGPGL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG K+DM+ EL
Sbjct: 190 QMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVGFKFDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVGDEMLKGISG
Sbjct: 250 ARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVGDEMLKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT++SLLQPAP
Sbjct: 310 GQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTTIVSLLQPAP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVTSKKDQEQYW
Sbjct: 370 ETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVTSKKDQEQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T YG KR ELLK
Sbjct: 430 SVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSYGAKRLELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
T++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLYLGALYFSMV
Sbjct: 490 TNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGALYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G WV V+YY
Sbjct: 550 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAGCWVTVSYYA 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLVVMALGG+II
Sbjct: 610 SGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLVVMALGGYII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+L++RSL+ E
Sbjct: 670 SRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAVLKERSLYAE 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RRKGE+VVIEL
Sbjct: 730 NYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRRKGESVVIEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+ELKQ+G++ED+LQLLVNV
Sbjct: 790 REYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGIVEDKLQLLVNV 848
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++FARISGYCE
Sbjct: 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDSFARISGYCE 908
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELVELT LSGAL+GLPGI+G
Sbjct: 909 QTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLSGALVGLPGIDG 968
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFEA+EGVPKIR GYNPA WMLE T
Sbjct: 1029 SIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRSGYNPATWMLEAT 1088
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S VEE+RLGVDFAEIYR+S+L+Q N+ELVE LSKPS +SK+L+F TKY +S QFL CL
Sbjct: 1089 SSVEENRLGVDFAEIYRKSSLYQYNQELVERLSKPSGNSKELHFPTKYCRSSFEQFLTCL 1148
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNL YWRNPQYTAVRFFYTV+ISLMLGSICW+FGAKR
Sbjct: 1149 WKQNLCYWRNPQYTAVRFFYTVIISLMLGSICWRFGAKR 1187
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822271|ref|XP_002879018.1| ATPDR4/PDR4 [Arabidopsis lyrata subsp. lyrata] gi|297324857|gb|EFH55277.1| ATPDR4/PDR4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1786 bits (4626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1059 (81%), Positives = 964/1059 (91%), Gaps = 1/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M E LLR + + G RSKLTILD +SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG +L
Sbjct: 130 MAEGLLRNIHVIGGKRSKLTILDGISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG K DM+ EL
Sbjct: 190 QTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKCDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK+AGI PDEDLDIFMKS ALGGQ+TSLVVEY+MKILGLDTCADTLVGDEM+KGISG
Sbjct: 250 ARREKLAGIVPDEDLDIFMKSLALGGQETSLVVEYVMKILGLDTCADTLVGDEMIKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTTVISLLQP+P
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVIL+SEGQI+YQGPR VLDFF+S+GFSCP+RKNVADFLQEVTSKKDQ+QYW
Sbjct: 370 ETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFSCPERKNVADFLQEVTSKKDQQQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+YG K+SELLK
Sbjct: 430 SVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
+F+WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +YLG+LYFSMV
Sbjct: 490 INFSWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES WVAVTYY
Sbjct: 550 IILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYT 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLVVM LGGFII
Sbjct: 610 IGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+L++RSLF
Sbjct: 670 SRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKSAGNHTSDSLGLALLKERSLFSG 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
+YWYWIG+ A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++RKG+ V+EL
Sbjct: 730 NYWYWIGIAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKRKGDEFVVEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LEDRLQLLVN+
Sbjct: 790 REYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNI 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQETFARISGYCE
Sbjct: 850 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGAL+GLPG++G
Sbjct: 910 QNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFE++EGV KIRPG+NPAAWML+VT
Sbjct: 1030 SIDIFESFDELLFMKRGGELIYAGPLGQKSCELINYFESIEGVQKIRPGHNPAAWMLDVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
S EE RLGVDFAEIYR SNL QRN+EL+E LSKPS +K++ F T+YSQS +QF+ACL
Sbjct: 1090 SSTEEHRLGVDFAEIYRNSNLCQRNKELIELLSKPSSIAKEIEFPTRYSQSLYSQFVACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR
Sbjct: 1150 WKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKR 1188
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225814|ref|NP_180259.1| ABC transporter G family member 32 [Arabidopsis thaliana] gi|75318727|sp|O81016.1|AB32G_ARATH RecName: Full=ABC transporter G family member 32; Short=ABC transporter ABCG.32; Short=AtABCG32; AltName: Full=Probable pleiotropic drug resistance protein 4 gi|3426037|gb|AAC32236.1| putative ABC transporter [Arabidopsis thaliana] gi|28144347|tpg|DAA00872.1| TPA_exp: PDR4 ABC transporter [Arabidopsis thaliana] gi|330252812|gb|AEC07906.1| ABC transporter G family member 32 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1059 (81%), Positives = 963/1059 (90%), Gaps = 1/1059 (0%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGKTTLLLALAGRLG +L
Sbjct: 130 MAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG KYDM+ EL
Sbjct: 190 QTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVGDEM+KGISG
Sbjct: 250 ARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTTVISLLQP+P
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVTSKKDQ+QYW
Sbjct: 370 ETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+YG K+SELLK
Sbjct: 430 SVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
+F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +YLG+LYFSMV
Sbjct: 490 INFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES WVAVTYY
Sbjct: 550 IILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYT 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLVVM LGGFII
Sbjct: 610 IGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+L++RSLF
Sbjct: 670 SRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLFSG 729
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
+YWYWIGV A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++RKG+ V+EL
Sbjct: 730 NYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKRKGDEFVVEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LEDRLQLLVN+
Sbjct: 790 REYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNI 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQETFARISGYCE
Sbjct: 850 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGAL+GLPG++G
Sbjct: 910 QNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+NPAAWML+VT
Sbjct: 1030 SIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACL 1019
+ EE RLGVDFAEIYR SNL QRN+EL+E LSKPS +K++ F T+YSQS +QF+ACL
Sbjct: 1090 ASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR
Sbjct: 1150 WKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKR 1188
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1065 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.993 | 0.745 | 0.783 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.979 | 0.732 | 0.589 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.984 | 0.720 | 0.585 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.983 | 0.720 | 0.581 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.978 | 0.735 | 0.574 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.982 | 0.725 | 0.568 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.991 | 0.718 | 0.557 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.597 | 0.446 | 0.480 | 1.4e-302 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.971 | 0.713 | 0.509 | 2.8e-288 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.980 | 0.738 | 0.507 | 1.1e-284 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4382 (1547.6 bits), Expect = 0., P = 0.
Identities = 830/1059 (78%), Positives = 930/1059 (87%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXX 60
M E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGK
Sbjct: 130 MAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGTNL 189
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG KYDM+ EL
Sbjct: 190 QTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLLEL 249
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVGDEM+KGISG
Sbjct: 250 ARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGISG 309
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTTVISLLQP+P
Sbjct: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQPSP 369
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVTSKKDQ+QYW
Sbjct: 370 ETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQYW 429
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
S P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+YG K+SELLK
Sbjct: 430 SVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSELLK 489
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
+F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +YLG+LYFSMV
Sbjct: 490 INFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMV 549
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
IILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES WVAVTYY
Sbjct: 550 IILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTYYT 609
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLVVM LGGFII
Sbjct: 610 IGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGFII 669
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAILRQRSLFPE 599
SRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+L++RSLF
Sbjct: 670 SRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLFSG 729
Query: 600 SYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
+YWYWIGV A+LGY ++LNP GK QAVVS++EL ER+++RKG+ V+EL
Sbjct: 730 NYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKRKGDEFVVEL 789
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
REYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LEDRLQLLVN+
Sbjct: 790 REYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNI 849
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQETFARISGYCE
Sbjct: 850 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCE 909
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGAL+GLPG++G
Sbjct: 910 QNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDG 969
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP
Sbjct: 970 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1029
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+NPAAWML+VT
Sbjct: 1030 SIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVT 1089
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACL 1019
+ EE RLGVDFAEIYR SNL QRN+EL+E F T+YSQS +QF+ACL
Sbjct: 1090 ASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACL 1149
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR
Sbjct: 1150 WKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKR 1188
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3331 (1177.6 bits), Expect = 0., P = 0.
Identities = 623/1056 (58%), Positives = 794/1056 (75%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQV 62
+ L L + + K TIL+D+SGI++P R+ LLLGPPSSGK +
Sbjct: 151 DKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQELKQ 210
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
+G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A + QGVGS+YDM+TELAR
Sbjct: 211 TGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTELAR 270
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
REK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CADT+VGD+ML+GISGGQ
Sbjct: 271 REKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISGGQ 330
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
KKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++ +GT +ISLLQPAPE
Sbjct: 331 KKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAPET 390
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
+ LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFLQEVTSKKDQ QYW+
Sbjct: 391 FNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYWAR 450
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+T KYG EL+KTS
Sbjct: 451 RDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVKTS 510
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
F+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT DG LY GAL+F ++++
Sbjct: 511 FSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILMML 570
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S +E+ +TYYVIG
Sbjct: 571 MFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYVIG 630
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+FAMLV ALGG ++SR
Sbjct: 631 FDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVLSR 690
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYW 602
D I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG L+ R P +YW
Sbjct: 691 DDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHAYW 750
Query: 603 YWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENV-VIELRE 661
YWIG GA+LG+ ++LN LGK QAV++++ + + + V+E
Sbjct: 751 YWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQSARSEGVVE--- 807
Query: 662 YLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721
+ N K++GMVLPF+P S+ F N+ Y VD+P E+ ++G EDRL LL V G
Sbjct: 808 -----AGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNG 858
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN 781
AFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK Q+TFARISGYCEQ
Sbjct: 859 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQT 918
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841
DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT L AL+GLPG +GLS
Sbjct: 919 DIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLS 978
Query: 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901
TEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSI
Sbjct: 979 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1038
Query: 902 DIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSP 961
DIFE+FDEL +KRGGE IY GPLG +S LI YFE+++G+ KI GYNPA WMLEV++
Sbjct: 1039 DIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTT 1098
Query: 962 VEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACLRK 1021
+E+ LGVDFA++Y+ S L++RN+EL++ F T+YSQSF Q +A L K
Sbjct: 1099 SQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWK 1158
Query: 1022 QNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
Q+ SYWRNP YTAVRF +T+ I+LM G++ W G K
Sbjct: 1159 QHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGK 1194
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3263 (1153.7 bits), Expect = 0., P = 0.
Identities = 619/1058 (58%), Positives = 781/1058 (73%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQV 62
E++L + R K+ IL D+SGI++PSR+TLLLGPPSSGK Q+
Sbjct: 172 ESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQM 231
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
SG+ITY GH F+EFVP +T AY+SQ D EMTVRE LDF+G+C GVGS+Y +++EL+R
Sbjct: 232 SGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSR 291
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
REK GIKPD +D FMKS A+ GQ+TSLV +Y++KILGLD CAD L GD M +GISGGQ
Sbjct: 292 REKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQ 351
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
KKRLTTGE+LVGPAR LFMDEIS GLDSSTT+QI K+++ D T +ISLLQPAPE
Sbjct: 352 KKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPET 411
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
+ELFDD+ILLSEGQIVYQGPR +VL+FF GF CP+RK VADFLQEVTSKKDQEQYW+
Sbjct: 412 FELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNK 471
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PY Y+S F+ F ++HTG+ L+ E VP+D+ H AAL T KYG EL K
Sbjct: 472 REQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKAC 531
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
F+ + LLMKRNSF+YVFK +Q+ I++LITMTV+ RT MH T+ DG + GA++FS++ +
Sbjct: 532 FDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINV 591
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+FNG E++ V +LPV YK RD FYP W + +P+W L IP SLIESG W+ +TYY IG
Sbjct: 592 MFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIG 651
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+ P+ RF RQLL YF ++QM++ LFR +G++GR +++N+ G+F +L+V LGGFII++
Sbjct: 652 FAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAK 711
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEAILRQRSLFPE 599
D I W W +++SP+MY Q A +NEFL W ++ + +GE +L+ R F E
Sbjct: 712 DDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTE 771
Query: 600 SYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
YW+WI + A+LG+ YLNPLG +A V ++E ++KGEN E
Sbjct: 772 PYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATV----VEEGKDKQKGENRGTEG 827
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
SSS G ++GMVLPFQPLS+AF N+NY+VD+P E+K +GV DRLQLL +V
Sbjct: 828 SVVELNSSSNKGP---KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDV 884
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
GAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG IEG I ISGYPK Q TFAR+SGYCE
Sbjct: 885 GGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCE 944
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QNDIHSP +TV ESL++SAWLRL ++I+++T+ FVEEVMELVEL L +++GLPG++G
Sbjct: 945 QNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDG 1004
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQP
Sbjct: 1005 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1064
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFESFDELL MKRGG++IYAG LG S +L++YFEAVEGVPKI GYNPA WML+VT
Sbjct: 1065 SIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVT 1124
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACL 1019
+P ES++ +DFA+I+ S+L++RN+EL++ F TKY+QSF+ Q AC
Sbjct: 1125 TPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACF 1184
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
KQ SYWR+PQY A+RF TVVI ++ G I W+ G K
Sbjct: 1185 WKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTK 1222
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3227 (1141.0 bits), Expect = 0., P = 0.
Identities = 616/1060 (58%), Positives = 782/1060 (73%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQV 62
E++L + + K+ IL D+SGII+PSR+TLLLGPPSSGK Q+
Sbjct: 170 ESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQM 229
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
SG+ITY GH F+EFVP +T AY+SQ D EMTVRE+LDF+G+C GVG++Y ++TEL+R
Sbjct: 230 SGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSR 289
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
RE+ AGIKPD ++D FMKS A+ GQ+TSLV +Y++K+LGLD CADTLVGD M +GISGGQ
Sbjct: 290 REREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQ 349
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
+KRLTTGE+LVGPA LFMDEIS GLDSSTT+QI K+++ D T VISLLQPAPE
Sbjct: 350 RKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPET 409
Query: 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSN 302
+ELFDD+ILLSEGQIVYQG R +VL+FF MGF CP+RK +ADFLQEVTSKKDQEQYW+
Sbjct: 410 FELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNR 469
Query: 303 PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTS 362
PY Y+S F+ F+S+H G+ L+ E VP+D+ HPAAL T KYG +L K
Sbjct: 470 REHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKAC 529
Query: 363 FNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVII 422
F+ + LLMKRNSF+YVFK +Q+ I++LI MTV+FRT MH T+ DG + GAL+FS++ +
Sbjct: 530 FDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINL 589
Query: 423 LFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482
+FNG E++ V +LPV +K RD FYP W + +P + L IP SLIES W+A+TYY IG
Sbjct: 590 MFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIG 649
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
+ P+ RF RQLL YF ++QM++ LFR +G+LGR ++AN+ G+ A+LVV LGGFIIS+
Sbjct: 650 FAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISK 709
Query: 543 DSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEAILRQRSLFPE 599
D IP W W ++ SP+MY Q A +NEFL W ++ + +GE +L+ R F E
Sbjct: 710 DDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTE 769
Query: 600 SYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDR-RRKGEN-VVI 657
YW+WI +GA+LG+ YLNPLG +A +E +++ + G V+
Sbjct: 770 PYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVV 829
Query: 658 ELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLV 717
EL S+S +G +KGMVLPFQPLS+AF N+NY+VD+P E+K +GV DRLQLL
Sbjct: 830 ELT-----STSSHGP---KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLR 881
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGY 777
+V GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG +EG I ISGYPK Q TFAR+SGY
Sbjct: 882 DVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGY 941
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGI 837
CEQNDIHSP +TV ESL++SAWLRL ++I+ +T+ FVEEVMELVEL L +++GLPG+
Sbjct: 942 CEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGV 1001
Query: 838 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
+GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIH
Sbjct: 1002 DGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1061
Query: 898 QPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLE 957
QPSIDIFESFDELL MKRGG++IYAG LG S +L++YFEA+EGVPKI+ GYNPA WML+
Sbjct: 1062 QPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLD 1121
Query: 958 VTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLA 1017
VT+P ES++ VDFA+I+ S++ +RN+EL++ F TKY+Q F+ Q A
Sbjct: 1122 VTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKA 1181
Query: 1018 CLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
C K S WR PQY A+RF TVVI ++ G + W+ G K
Sbjct: 1182 CFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTK 1221
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3196 (1130.1 bits), Expect = 0., P = 0.
Identities = 608/1059 (57%), Positives = 790/1059 (74%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXX 60
+ E LR L +K+TIL D+SGII+PSR+TLLLGPPSSGK
Sbjct: 142 IAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSL 201
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+V+G++TYNGHG +EFVP +TSAY+SQ D V MTV+ETLDF+ +CQGVG++YD+++EL
Sbjct: 202 KVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSEL 261
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
RREK AGI P+ ++D+FMKS A G K+SL+ +Y ++ILGLD C DT+VGDEM++GISG
Sbjct: 262 VRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISG 321
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+ R D T ++SLLQPAP
Sbjct: 322 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAP 381
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E +ELFDD+ILLSEGQIVYQGPR VL FF + GF CP RK ADFLQEVTS+KDQEQYW
Sbjct: 382 ETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYW 441
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
++ PY YIS +F++ F ++H G NL ++L+VP+DR +HPA+L K+ +S+L K
Sbjct: 442 ADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFK 501
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
++ +LLLMKRN+F Y+ K +Q++I+ALI TV+ RT M K DG +Y+GAL FSM+
Sbjct: 502 VCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMI 561
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
+ +FNGF E+++++ +LPV YK RDL F+P W +++P++ L IP S+ ES WV +TYY+
Sbjct: 562 VNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYM 621
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IG+ P + RF + LL+ F QM+ G+FR I + R+MI+ANT G+ +L++ LGGFI+
Sbjct: 622 IGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIV 681
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSLGEAILRQRSLFPE 599
R IPKWW W +WVSP+ Y +A +VNE L W ++ + +++ SLG A+L +F +
Sbjct: 682 PRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNSTSLGLAVLEIFDIFTD 741
Query: 600 SYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
WYWIGVG +LG+ ++LNPL KQQAVVSK+ +E +R G
Sbjct: 742 PNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEE-NRAENGS------ 794
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
+S S++ K +GMVLPF PL+M+F N+NY+VD+P E+K++GV +D+LQLL V
Sbjct: 795 -----KSKSIDVK----RGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEV 845
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
TG FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISG+PKRQETFARISGYCE
Sbjct: 846 TGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCE 905
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QNDIHSP +TV ESL++SA+LRLP E+ + FV+EVMELVEL SL A++GLPGI G
Sbjct: 906 QNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITG 965
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQP
Sbjct: 966 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1025
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFE+FDELL +KRGG++IYAGPLG S ++I+YF+A+ GVPKI+ YNPA WMLEV+
Sbjct: 1026 SIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVS 1085
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACL 1019
S E++L +DFAE Y+ S+L+Q+N+ LV+ FST++SQS QF +CL
Sbjct: 1086 SMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCL 1145
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQ ++YWR P Y RFF+T+ ++MLGSI WK G KR
Sbjct: 1146 WKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKR 1184
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3164 (1118.8 bits), Expect = 0., P = 0.
Identities = 602/1059 (56%), Positives = 772/1059 (72%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXX 60
M EA L + I +++LTIL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 164 MGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSL 223
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
VSG++TYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +CQGVG++YD++ EL
Sbjct: 224 DVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNEL 283
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGI P+ D+D+FMK+ A G K+SL+ +Y +KILGLD C DT+VGD+M++GISG
Sbjct: 284 ARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIVGDDMMRGISG 343
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+ + T +ISLLQPAP
Sbjct: 344 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEATVLISLLQPAP 403
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK ADFLQEVTSKKDQEQYW
Sbjct: 404 ETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYW 463
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
+P PYRYI +FA +F +H G LS EL+VP+D+ +H AAL KY K++ELLK
Sbjct: 464 VDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDKYSIKKTELLK 523
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
+ ++ + +LMKRNSF YVFK +Q++I+A IT T++ RT MH + D +Y+G+L F+M+
Sbjct: 524 SCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANIYVGSLLFAMI 583
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
+ +FNG E++M + +LPV YK RDL F+P W YT+P++ L IP S+ ES W+ VTYY
Sbjct: 584 VNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFESTAWMVVTYYS 643
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IGY P+ RF +Q L+ F + QM+ G+FR I S R M +ANT G +LVV GGF++
Sbjct: 644 IGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLLVVFLTGGFLL 703
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSLGEAILRQRSLFPE 599
R IP WW W +W+SPL YA NA +VNE W +K +GNS LG ++L +F +
Sbjct: 704 PRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTSVLNIWDVFDD 763
Query: 600 SYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIEL 659
WYWIGVG +LG+ +YL+PLGK QA++ K+E E + + G N E+
Sbjct: 764 KNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEE-DEEAKGKAGSNKETEM 822
Query: 660 REYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNV 719
S++ K KGMVLPF PL+M+F ++ YFVD+P E++++GV E RLQLL V
Sbjct: 823 E-------SVSAK----KGMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRLQLLKGV 871
Query: 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
T AFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ +SG+PK+QETFARISGYCE
Sbjct: 872 TSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFARISGYCE 931
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q DIHSP +TV ESL+FSA+LRL E+ E + FV++VMELVEL L A++GLPG+ G
Sbjct: 932 QTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVTG 991
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V+TGRT+VCTIHQP
Sbjct: 992 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQP 1051
Query: 900 SIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVT 959
SIDIFE+FDELL MKRGG +IY+GPLG S ++++YFE+ GVPKI YNPA WMLE +
Sbjct: 1052 SIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWMLEAS 1111
Query: 960 SPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACL 1019
S E +LGVDFAE+Y+ S L QRN+ LV+ F+T++SQ+ QF +CL
Sbjct: 1112 SLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCL 1171
Query: 1020 RKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
KQ +YWR+P Y VRF +T+ SLM+GS+ W+ G KR
Sbjct: 1172 WKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKR 1210
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3106 (1098.4 bits), Expect = 0., P = 0.
Identities = 599/1074 (55%), Positives = 773/1074 (71%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXX 60
M E+ L + I +++LTIL D+SG+I+P R+TLLLGPPSSGK
Sbjct: 166 MGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKLDKSL 225
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
QVSG ITYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +CQGVG++YD++ EL
Sbjct: 226 QVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGVGTRYDLLNEL 285
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGI P+ D+D+FMK+ A G K SLV +Y +KILGLD C DT+VGD+M++GISG
Sbjct: 286 ARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIVGDDMMRGISG 345
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+ + T ++SLLQPAP
Sbjct: 346 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEATVLMSLLQPAP 405
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E ++LFDD+IL+SEGQIVYQGPR ++L+FF S GF CP+RK ADFLQEVTSKKDQEQYW
Sbjct: 406 ETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEVTSKKDQEQYW 465
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
NP PY YI +FA + S+H G +S ELAVPFD+ H AAL KY + ELLK
Sbjct: 466 VNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDKYSVSKRELLK 525
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
+ ++ + LLM+RN+F YVFK +Q++I+A IT T+F RT M+ + D LY+GAL F M+
Sbjct: 526 SCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANLYIGALLFGMI 585
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
I +FNGF E++M+V++LPV YK RDL FYPSW +++P++ L IP+S++ES W+ VTYY
Sbjct: 586 INMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILESTAWMVVTYYS 645
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IG+ P+ RF +Q LL F + QM+ LFR+I S+ R M++ANT G+ +L+V LGGF++
Sbjct: 646 IGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLLLVFLLGGFLL 705
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKK--AGNSNFSLGEAILRQRSLFP 598
+ IP WW W +WVSPL YA N VNE W K + NS LG +L ++
Sbjct: 706 PKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDVYH 765
Query: 599 ESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERD------RR--- 649
+ WYWI VGA+L + +YLNPLGK+ ++ ++E ++ D RR
Sbjct: 766 QKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQGKDPMRRSLS 825
Query: 650 -----RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELK 704
R+GE V R ++ +G +KGMVLPF PL+M+F ++ YFVD+P E++
Sbjct: 826 TADGNRRGE--VAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEMR 883
Query: 705 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764
+GV E RLQLL VTGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ ISG+
Sbjct: 884 DQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGF 943
Query: 765 PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL 824
PK QETFARISGYCEQ DIHSP +TV ESL+FSA+LRLP E+ + + FV++VMELVEL
Sbjct: 944 PKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVEL 1003
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
SL +++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN
Sbjct: 1004 DSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 1063
Query: 885 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPK 944
V+TGRT+VCTIHQPSIDIFE+FDEL+ MKRGG++IYAGPLG S ++++YFE+ GV K
Sbjct: 1064 TVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSK 1123
Query: 945 IRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFS 1004
I YNPA WMLE +S E +L VDFAE+Y +S L QRN+ LV+ F+
Sbjct: 1124 IPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFA 1183
Query: 1005 TKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
T++SQ+ QF +CL KQ +YWR+P Y VRF +T+ SL++G++ W+ G R
Sbjct: 1184 TQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNR 1237
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1647 (584.8 bits), Expect = 1.4e-302, Sum P(2) = 1.4e-302
Identities = 306/637 (48%), Positives = 428/637 (67%)
Query: 3 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQV 62
E L LRI + + KL IL D+SGII+P R+TLLLGPP SGK +
Sbjct: 157 ERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLDKSLKK 216
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKY-DMITELA 121
+G ITYNG +F RTSAY+SQ D +AE+TVRETLDFA +CQG + + +L
Sbjct: 217 TGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGYMKDLT 276
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181
R EK GI+P ++D FMK+ ++ G+K S+ +Y++K+LGLD C+DT+VG++M++G+SGG
Sbjct: 277 RLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMRGVSGG 336
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241
Q+KR+TTGE+ VGP + LFMDEIS GLDSSTT+QI+K +++ +D T +++LLQPAPE
Sbjct: 337 QRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALLQPAPE 396
Query: 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWS 301
++LFDD+ILLSEG +VYQGPR V+ FF S+GF P RK VADFLQEVTSKKDQ QYW+
Sbjct: 397 TFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQAQYWA 456
Query: 302 NPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKT 361
+P PY++I A AF + G +LA PFD++ P+AL +K+ E LK
Sbjct: 457 DPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGWENLKV 516
Query: 362 SFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVI 421
F +LLL+KR+ F+Y F+ Q+ V L+T TVF +T +H + G YL L+F +V
Sbjct: 517 CFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLFFGLVH 576
Query: 422 ILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481
++FNGF+E+ +++++LPV YK RD F+P+W ++I SW L +P S++E+ W V Y+ +
Sbjct: 577 MMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGVVYFTV 636
Query: 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIIS 541
G P+ RF R +LL F +HQM++GLFR++ SL R+M++ANTFGS A+L+V LGGF+I
Sbjct: 637 GLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLGGFVIP 696
Query: 542 RDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESY 601
+ I WW+WGFWVSPL Y Q A +VNEF W + S+ ++G +L+ RS Y
Sbjct: 697 KADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSFPTNDY 756
Query: 602 WYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVV 638
WYWIG+ ++GY +YLNPL K +AVV
Sbjct: 757 WYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVV 793
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2769 (979.8 bits), Expect = 2.8e-288, P = 2.8e-288
Identities = 530/1041 (50%), Positives = 719/1041 (69%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 74
+ +K+ I++D++GII+P RLTLLLGPPS GK + SG+I+YNGH
Sbjct: 183 HEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLD 242
Query: 75 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
EFVP +TSAY+SQ D +AEMTVRET+DF+ +CQGVGS+ D++ E+++REK GI PD +
Sbjct: 243 EFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTE 302
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
+D +MK+ ++ G + SL +YI+KILGLD CA+ L+GD M +GISGGQKKRLTT E++VG
Sbjct: 303 VDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVG 362
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
P + LFMDEI+NGLDSST +QI+K L+ T ++SLLQPAPE+Y+LFDD++L+++
Sbjct: 363 PTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAK 422
Query: 255 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGK 314
G+IVY GPR VL+FF GF CP+RK VADFLQEV SKKDQ QYW + LPY ++S
Sbjct: 423 GRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEM 482
Query: 315 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNS 374
++ F GK + + L+ P+DR +H ALS S Y EL + + LLMKRN
Sbjct: 483 LSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNY 542
Query: 375 FIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLV 434
F+Y+FK QL++ A ITMTVF RT M I G Y+ AL+F+++I+L +GF E+SM
Sbjct: 543 FVYIFKTAQLVMAAFITMTVFIRTRMGIDIIH-GNSYMSALFFALIILLVDGFPELSMTA 601
Query: 435 AKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 494
+L V YK + L FYP+W Y IP+ L +P S ES W ++YYVIGY P RF +Q
Sbjct: 602 QRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQF 661
Query: 495 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFW 554
+L F +H SI +FR + ++ + ++ + T GSF +L GF+I S+P W WGFW
Sbjct: 662 ILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFW 721
Query: 555 VSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYX 614
+PL Y + SVNEFL W++ N NF+LG IL+ R + Y YW+ + A+LG+
Sbjct: 722 ANPLSYGEIGLSVNEFLAPRWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVSLCALLGFT 780
Query: 615 XXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYF 674
++L +A++S+ +L E K E ++++ K
Sbjct: 781 VLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKST----EDSSVRKKTTDSPVKTE 836
Query: 675 KQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 734
++ MVLPF+PL++ F ++NYFVD+PVE++ +G + +LQLL ++TGAFRPG+LTAL+GV
Sbjct: 837 EEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGV 896
Query: 735 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 794
SGAGKTTL+DVLAGRKT G IEGDI ISG+PK QETFAR+SGYCEQ DIHSP +TV ES+
Sbjct: 897 SGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESV 956
Query: 795 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 854
++SAWLRL EI+ T+ FV++V+E +EL + +L+G+ G++GLSTEQRKRLTIAVEL
Sbjct: 957 IYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVEL 1016
Query: 855 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914
VANPSI+FMDEPT+GLDARAAAIVMR V+N+ +TGRTIVCTIHQPSIDIFE+FDEL+ +K
Sbjct: 1017 VANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLK 1076
Query: 915 RGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEI 974
RGG +IY GPLG S +I+YFE+V +PKI+ +NPA WML+V+S E LGVDFA+I
Sbjct: 1077 RGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKI 1136
Query: 975 YRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTA 1034
Y S L++RN ELV+ F ++QS+ QF + L K NLSYWR+P Y
Sbjct: 1137 YHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNL 1196
Query: 1035 VRFFYTVVISLMLGSICWKFG 1055
+R +T+V SL+ G++ WK G
Sbjct: 1197 MRMMHTLVSSLIFGALFWKQG 1217
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2735 (967.8 bits), Expect = 1.1e-284, P = 1.1e-284
Identities = 534/1052 (50%), Positives = 706/1052 (67%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGK 65
L +L R N + + IL D+SGII P RLTLLLGPP GK + G+
Sbjct: 139 LLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGE 198
Query: 66 ITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 125
I+YNGHG E VP +TSAY+SQ D +AEMT RET+DF+ +CQGVGS+ D++ E+++REK
Sbjct: 199 ISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKREK 258
Query: 126 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 185
GI PD ++D +MK+ ++ G K SL +YI+KILGLD CA+TLVG+ M +GISGGQKKR
Sbjct: 259 DGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQKKR 318
Query: 186 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245
LTT E++VGP + LFMDEI+NGLDSST +QIIK L+ + T +SLLQPAPE+Y+L
Sbjct: 319 LTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESYDL 378
Query: 246 FDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYL 305
FDD++L++EG+IVY GPR VL FF GF CP+RK VADFLQEV SKKDQ QYW + L
Sbjct: 379 FDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQNL 438
Query: 306 PYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNW 365
P+ ++S ++ F G+ + E L+ P+D H ALS + Y + EL + +
Sbjct: 439 PHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACISR 498
Query: 366 QLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFN 425
+ LLMKRN F+Y+FK QL++ A+ITMTVF RT M I G Y+ L+F+ V++L +
Sbjct: 499 EFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIH-GNSYMSCLFFATVVLLVD 557
Query: 426 GFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDP 485
G E+SM V +L V YK + L FYP+W Y IP+ L IP S ES W +TYYVIGY P
Sbjct: 558 GIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGYTP 617
Query: 486 NVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSI 545
RF RQ ++ F +H SI +FR I ++ + + A T GSF ML+ GF I +
Sbjct: 618 EPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDM 677
Query: 546 PKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWI 605
P W WGFWV+P+ YA+ SVNEFL W K +N +LG IL R L + Y YW+
Sbjct: 678 PGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQP-TNVTLGRTILESRGLNYDDYMYWV 736
Query: 606 GVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQR 665
+ A+LG S+L + ++S+ +L E + ++ + L
Sbjct: 737 SLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKDSS---VKKNKPLDS 793
Query: 666 SSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRP 725
S N K M+LPF+PL++ F ++NY+VDVPVE+K +G E +LQLL +TGAFRP
Sbjct: 794 SIKTNEDPGK---MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEKKLQLLSEITGAFRP 850
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 785
GVLTAL+G+SGAGKTTL+DVLAGRKT G IEG+I ISG+ K QETFAR+SGYCEQ DIHS
Sbjct: 851 GVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETFARVSGYCEQTDIHS 910
Query: 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQR 845
P +TV ESL++SAWLRL EI +T+ FV++V+E +EL + AL+G+ G++GLSTEQR
Sbjct: 911 PSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDALVGVAGVSGLSTEQR 970
Query: 846 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFE 905
KRLT+AVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ TGRTIVCTIHQPSI IFE
Sbjct: 971 KRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFE 1030
Query: 906 SFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEES 965
+FDEL+ +KRGG +IY+GPLG S +I+YF+ + GV KIR YNPA WMLEVTS E+
Sbjct: 1031 AFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNPATWMLEVTSESVET 1090
Query: 966 RLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACLRKQNLS 1025
L +DFA+IY S+L++ N ELV+ +F ++Q++ QF +CL K +LS
Sbjct: 1091 ELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNWWEQFKSCLWKMSLS 1150
Query: 1026 YWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1057
YWR+P Y +R +T + S + G + W G K
Sbjct: 1151 YWRSPSYNLMRIGHTFISSFIFGLLFWNQGKK 1182
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O81016 | AB32G_ARATH | No assigned EC number | 0.8101 | 0.9934 | 0.7450 | yes | no |
| Q8GU87 | PDR6_ORYSJ | No assigned EC number | 0.7629 | 0.9924 | 0.7412 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6381 | 0.9877 | 0.7285 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1065 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-101 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-75 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-69 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-66 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-61 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-45 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-43 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-43 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-42 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-39 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-33 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-31 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 7e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-27 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-25 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-24 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-23 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 9e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-17 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-16 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-14 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-14 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 9e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-10 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 9e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-09 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 8e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 9e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-08 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 9e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 9e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-07 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-07 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 9e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-06 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-06 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-05 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 8e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 7e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 8e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 0.001 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.001 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.001 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.003 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.003 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.004 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 0.004 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.004 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.004 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.004 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1536 bits (3978), Expect = 0.0
Identities = 650/1079 (60%), Positives = 826/1079 (76%), Gaps = 21/1079 (1%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
+ E+ L L I ++KLTIL D SGII+PSR+TLLLGPPSSGKTTLLLALAG+L L
Sbjct: 160 IAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSL 219
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+VSG+ITYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +CQGVG++YD+++EL
Sbjct: 220 KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSEL 279
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARREK AGI P+ ++D+FMK+ A+ G K+SL+ +Y +KILGLD C DT+VGDEM++GISG
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG 339
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+ + T ++SLLQPAP
Sbjct: 340 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAP 399
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYW 300
E ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK ADFLQEVTSKKDQEQYW
Sbjct: 400 ETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYW 459
Query: 301 SNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLK 360
++ PYRYIS +FAE F S+H G L EL+VPFD+ +H AAL SKY + ELLK
Sbjct: 460 ADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519
Query: 361 TSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMV 420
++ + LLMKRN+F+YVFK +Q++IVA I TVF RT MH + +DG LY+GAL FSM+
Sbjct: 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMI 579
Query: 421 IILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480
I +FNGF E+++++ +LPV YK RDL F+P W +T+P++ L IP S+IES WV +TYY
Sbjct: 580 INMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYS 639
Query: 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFII 540
IG+ P RF +QLLL F + QM+ G+FR+I S+ R MI+ANT G+ +L+V LGGFI+
Sbjct: 640 IGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFIL 699
Query: 541 SRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSLGEAILRQRSLFPE 599
+ IP WW W +WVSPL Y NA +VNE W +K A +++ LG A+L +F +
Sbjct: 700 PKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTD 759
Query: 600 SYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERD------------ 647
WYWIGVGA+LG+T+LFN LFT L+YLNPLGK+QA++S++ +E +
Sbjct: 760 KNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSS 819
Query: 648 ----RRRKGENVVIELREYLQRSSSLNGKYFK----QKGMVLPFQPLSMAFGNINYFVDV 699
R+ + E L ++ + + ++GMVLPF PL+M+F ++NYFVD+
Sbjct: 820 ADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDM 879
Query: 700 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI 759
P E+K++GV EDRLQLL VTGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI
Sbjct: 880 PAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI 939
Query: 760 YISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 819
ISG+PK+QETFARISGYCEQNDIHSP +TV ESL++SA+LRLP E+ E + FV+EVM
Sbjct: 940 RISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVM 999
Query: 820 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
ELVEL +L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVM
Sbjct: 1000 ELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059
Query: 880 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 939
RTVRN V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG++IY+GPLG S ++I+YFEA+
Sbjct: 1060 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAI 1119
Query: 940 EGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSK 999
GVPKI+ YNPA WMLEV+S E +LG+DFAE Y+ S+L+QRN+ LV+ LS P P +
Sbjct: 1120 PGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGAS 1179
Query: 1000 KLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKR 1058
L F+T+YSQS QF +CL KQ +YWR+P Y VRFF+T+ +LM+G+I WK G KR
Sbjct: 1180 DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKR 1238
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 960 bits (2483), Expect = 0.0
Identities = 341/1111 (30%), Positives = 535/1111 (48%), Gaps = 105/1111 (9%)
Query: 2 TEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-GHHL 60
R+L+ +R ++ IL + G+I+P LT++LG P SG +TLL +A G H+
Sbjct: 58 LTRGFRKLKKFRDTKTF-DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHI 116
Query: 61 QVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
V G ITY+G +E Y ++ D +TV ETLDFA +C+ ++ D ++
Sbjct: 117 GVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVS 176
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 178
+ IA + M GL +T VG++ ++G+
Sbjct: 177 REEYAKHIA--------------------------DVYMATYGLSHTRNTKVGNDFVRGV 210
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238
SGG++KR++ E +G A++ D + GLDS+T + I+ LK S LD T ++++ Q
Sbjct: 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270
Query: 239 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQ 298
+ +AYELFD VI+L EG +Y GP +F MGF CP R+ ADFL +TS + Q
Sbjct: 271 SQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQ 329
Query: 299 YWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDR----------RFNHPA---- 344
Y +P +F + + L +E+ DR R +H A
Sbjct: 330 IKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSK 388
Query: 345 -ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHK 403
+S Y S +K L MK N +F +I+ALI +VF+
Sbjct: 389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK--- 445
Query: 404 TIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSI 463
D GAL+F+++ F+ E++ + P++ KHR Y I S I
Sbjct: 446 NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEI 505
Query: 464 PTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANT 523
P +IES + + Y+++ + RF LL+ F LFR IG++ + + A T
Sbjct: 506 PFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMT 565
Query: 524 FGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWD------- 576
+ +L + GF I R S+ W W ++V+PL YA + VNEF G ++
Sbjct: 566 PAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPS 625
Query: 577 ----KKAGNSN-------------FSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNA 619
G +N + G+ L+ + S W G ++G+T+ F
Sbjct: 626 GGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFF 684
Query: 620 LFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGM 679
++ + ++ ++ + + ++ GE +S+ N + G
Sbjct: 685 VYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGET----------SASNKNDI---EAGE 731
Query: 680 VLPFQPLSMAFGNINYFVDVPVELKQE-----------GVLEDRLQLLVNVTGAFRPGVL 728
VL L+ ++N D+ E ++ + +++ +L NV G +PG L
Sbjct: 732 VLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTL 791
Query: 729 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 788
TAL+G SGAGKTTL++VLA R T G+I G + +F R GY +Q D+H P
Sbjct: 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTS 851
Query: 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 848
TV ESL FSA+LR P + + +VEEV++L+E+ S + A++G+PG GL+ EQRKRL
Sbjct: 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRL 910
Query: 849 TIAVELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 907
TI VELVA P ++F+DEPTSGLD++ A + + +R + + G+ I+CTIHQPS +FE F
Sbjct: 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEF 970
Query: 908 DELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRL 967
D LL +++GG+ +Y G LG S +I YFE G PK NPA WMLEV +
Sbjct: 971 DRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHA 1029
Query: 968 GVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFST---KYSQSFANQFLACLRKQNL 1024
D+ E++R S+ +Q + ++ L ++ N KY+ S QF L +
Sbjct: 1030 NQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQ 1089
Query: 1025 SYWRNPQYTAVRFFYTVVISLMLGSICWKFG 1055
YWR P Y +FF T+ +L +G +K G
Sbjct: 1090 QYWRTPDYLYSKFFLTIFAALFIGFTFFKVG 1120
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 317 bits (814), Expect = e-101
Identities = 112/239 (46%), Positives = 144/239 (60%), Gaps = 47/239 (19%)
Query: 685 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 744
+ + N+NY V V + QLL N++G +PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 745 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 804
VLAGRKT G+I G+I I+G P + F R +GY EQ D+HSP LTV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 805 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 865 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
EPTSGLD++AA ++R ++ + ++G+ I+CTIHQPS IFE FD LL +KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 5e-75
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 45/239 (18%)
Query: 685 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 744
++++F N+ V + QLL NV+G +PG LTA++G SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 745 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 804
LAGR+TG + G++ I+G P + +F +I GY Q+DI P LTV E+L+F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 805 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 865 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
EPTSGLD+ +A VM +R + +TGRTI+C+IHQPS +IFE FD+LL + + G +IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 1e-69
Identities = 120/353 (33%), Positives = 186/353 (52%), Gaps = 21/353 (5%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQET 770
R LL NV+G +PG L A++G SGAGKTTLM+ LA R G+ G + ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
IS Y +Q+D+ P LTV E L+F A LR+P + + +R V+EV++ + L +
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 831 LIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
IG+PG + GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ + G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 949
+TI+CTIHQPS ++FE FD+++ M G + Y G + + +F + G P Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENY 269
Query: 950 NPAAWMLEVTSPVEESRLGV----------DFAEIYRRSNLFQRNRELVESLSKPSPSSK 999
NPA + ++V + + S R L N L +
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDML--VNTNLWSGKAGGLVKDS 327
Query: 1000 KLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICW 1052
+ Y+ S+ QF A L++ LS R+P VR T++ ++++G I
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYL 380
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-66
Identities = 159/636 (25%), Positives = 273/636 (42%), Gaps = 85/636 (13%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH--GF 73
R + +L ++SG+ +P L ++G +GKTTL+ ALA R ++ SG + NG
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA 94
Query: 74 KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
KE SAYV Q D + +TVRE L
Sbjct: 95 KEM--RAISAYVQQDDLFIPTLTVREHL-------------------------------- 120
Query: 134 DLDIFMKSFALGGQKTS----LVVEYIMKILGLDTCADTLVGDE-MLKGISGGQKKRLTT 188
+F + + T V+ +++ LGL CA+T +G +KG+SGG++KRL
Sbjct: 121 ---MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 189 G-ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELF 246
ELL P +LF DE ++GLDS Y +++ LK A G T+I ++ QP+ E +ELF
Sbjct: 178 ASELLTDP-PLLFCDEPTSGLDSFMAYSVVQVLKG--LAQKGKTIICTIHQPSSELFELF 234
Query: 247 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 306
D +IL++EG++ Y G + FF+ +G CP+ N ADF +V + +P
Sbjct: 235 DKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV-----------IP 283
Query: 307 YRYISPGKFAEA-FHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNW 365
+ E S+ + L + S+ E S+
Sbjct: 284 GSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG--YNASWWT 341
Query: 366 Q-LLLMKRNSFIYVFK--------FIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 416
Q L+KR S++ V + IQ ++ A++ ++ + K + + GAL+
Sbjct: 342 QFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN---INGALF 397
Query: 417 FSMVIILF-NGFTEVSMLVAKLPV-LYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 474
+ + F N F +++ A+LPV L + R + S + + A +P +I +
Sbjct: 398 LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA-ELPLFIILPALFT 456
Query: 475 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 534
++TY++IG F L L + ++ +I + +A T G ++ +
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516
Query: 535 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSN-----FSLGEA 589
GGF I+ DSIP ++ W ++S Y +N++ + + ++N S GE
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD-NIECTSANTTGPCPSSGEV 575
Query: 590 ILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFL 625
IL S + + +L + A F +
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 2e-61
Identities = 84/254 (33%), Positives = 117/254 (46%), Gaps = 64/254 (25%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 69
RSK+ IL D SG+++P + L+LG P SG +TLL ALA R ++ V G I YN
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 70 GHGFKEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 127
G +KEF P YVS++D +TVRETLDFA +C+G E +
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-------------NEFVR 117
Query: 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 187
GI GG++ + + A+ LV
Sbjct: 118 GIS--------------GGERKRV------------SIAEALV----------------- 134
Query: 188 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247
A VL D + GLDSST +I+K ++ L TT +SL Q + E Y+LFD
Sbjct: 135 ------SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188
Query: 248 DVILLSEGQIVYQG 261
V++L EG+ +Y G
Sbjct: 189 KVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 186 bits (475), Expect = 1e-53
Identities = 79/214 (36%), Positives = 129/214 (60%), Gaps = 10/214 (4%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETF 771
++L +V+ G + A++G SG+GKTTL+D ++GR + GG G I +G P++ + F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL--VELTSLSG 829
+ Y Q+DI PGLTV E+L ++A LRLP + R E + L + LT + G
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKKRVEDVLLRDLALTRIGG 138
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
L+ G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ +
Sbjct: 139 NLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
R ++ TIHQP D+F FD +L + GE++Y+G
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 5e-45
Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 18/268 (6%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQETF 771
L V+ PG + L+G +GAGKTTL+ +LAG G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKV 76
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R GY Q P LTV E+L F A L S+ E E + +EE++EL L +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
+ LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R + G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 892 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNP 951
+ + E D ++ + G++I G EL + F + ++ P
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTPE----ELKEKFGGKGVI-ELEPERLE 242
Query: 952 AAWMLEVTSPVEESRLGVDFAEIYRRSN 979
A +LE V+ + E
Sbjct: 243 LAELLEGLKLVKGEEELAEILEALLEEG 270
|
Length = 293 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 4e-43
Identities = 152/568 (26%), Positives = 270/568 (47%), Gaps = 87/568 (15%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEF 76
+L +L +++G RP LT L+G +GKTTL+ LAGR G +++ G I +G K+
Sbjct: 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIRISGFPKKQE 949
Query: 77 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
R S Y Q D ++TVRE+L ++ + + E+++ EK+
Sbjct: 950 TFARISGYCEQNDIHSPQVTVRESLIYSAFLR-------LPKEVSKEEKM---------- 992
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
+F V+ +M+++ LD D +VG + G+S Q+KRLT LV
Sbjct: 993 MF--------------VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEG 255
++FMDE ++GLD+ +++ ++++ G TV+ ++ QP+ + +E FD+++L+ G
Sbjct: 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Query: 256 -QIVYQGP--RVS--VLDFFASM-GFSCPKRK-NVADFLQEVTSKKDQEQYWSNPYLPYR 308
Q++Y GP R S ++++F ++ G K K N A ++ EV+S + + +
Sbjct: 1097 GQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGID------ 1150
Query: 309 YISPGKFAEAFHS---YHTGKNLSEELAVP--------FDRRFNHPAALSTSKYGEKRSE 357
FAE + S Y K L +EL+ P F ++ S S +G+ +S
Sbjct: 1151 ------FAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQY------SQSTWGQFKSC 1198
Query: 358 LLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF 417
L K Q R+ + +F L AL+ T+F++ +D + +GA+Y
Sbjct: 1199 LWK-----QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253
Query: 418 SMVIILFNGFTEVSMLVA-KLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 476
+++ + N + V +VA + V Y+ R Y + Y I IP LI++ ++ +
Sbjct: 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313
Query: 477 TYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIG----SLGRNMIVANTFGSFAMLVV 532
Y ++ ++ +F ++F+ S F G SL N VA F + +
Sbjct: 1314 VYAMVAFEWTAAKF----FWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLF 1369
Query: 533 MALGGFIISRDSIPKWWIWGFWVSPLMY 560
GF I R IPKWW+W +W+ P+ +
Sbjct: 1370 NLFSGFFIPRPKIPKWWVWYYWICPVAW 1397
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 171 bits (434), Expect = 4e-43
Identities = 146/581 (25%), Positives = 245/581 (42%), Gaps = 107/581 (18%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-F 76
K IL+++ G ++P LT L+G +GKTTLL LA R+ + G NG F
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 77 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
R+ YV QQD + TVRE+L F+ A + + E ++
Sbjct: 835 --QRSIGYVQQQDLHLPTSTVRESLRFS----------------AYLRQPKSVSKSEKME 876
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGP 195
VE ++K+L +++ AD +VG +G++ Q+KRLT G EL+ P
Sbjct: 877 Y---------------VEEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELVAKP 920
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSE 254
+LF+DE ++GLDS T + I K ++ G ++ ++ QP+ +E FD ++LL +
Sbjct: 921 KLLLFLDEPTSGLDSQTAWSICKLMRKLADH--GQAILCTIHQPSAILFEEFDRLLLLQK 978
Query: 255 G-QIVYQGP----RVSVLDFFASMGFS-CPKRKNVADFLQEVTSKKDQEQYWSNPYLPYR 308
G Q VY G +++++F G CP+ N A+++ EV
Sbjct: 979 GGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEV------------------ 1020
Query: 309 YISPGKFAEAFHSYH-TGKNLSEELAVP--FDRRFNHPAALSTSKYGEKRSELLKTSFNW 365
I A A YH +N SE AV DR + + S+ S +
Sbjct: 1021 -IGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKY-AASLWY 1078
Query: 366 Q-LLLMKRN--------SFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 416
Q L++ R ++Y KF + AL FF+ ++ + A++
Sbjct: 1079 QFKLVLWRTFQQYWRTPDYLYS-KFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVF 1134
Query: 417 FSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFY---PSWVYTIPSWALS-----IPTSLI 468
M +LFN + LP RDL+ PS ++ ++ + IP +L+
Sbjct: 1135 --MATVLFNPLIQQY-----LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLV 1187
Query: 469 ESGFWVAVTYYVIGYDPNVVR----FSRQLLLY-----FFLHQMSIGLFRVIGSLGRNMI 519
+ + YY +G+ N + R +L + FFL+ ++G + S N
Sbjct: 1188 AGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVI--SFNPNAD 1245
Query: 520 VANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMY 560
A S + ++ G + +P +WI+ + SP Y
Sbjct: 1246 NAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY 1286
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 2e-42
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 357 ELLKTSFNWQLLLMKRNSF-IYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 415
LK + L R+ +++ IQ L++AL+ TVF T G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 416 YFSMVIILFNGFTEVSMLVAK-LPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 474
+FS++ F+ T +S + + VL + Y Y + + +P SL+++ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 475 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 534
+ Y+++G + RF LL+ + GL I +L + A+ G +L ++
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 535 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 570
L GF I DS+P W W ++++PL YA A NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-40
Identities = 109/355 (30%), Positives = 186/355 (52%), Gaps = 26/355 (7%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L VTG PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
G+ Q+DI P LTV E+L+F + LRLP + + + E V+ + LT +IG
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
I G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ ++ G+TIV
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 895 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAW 954
++HQPS +++ FD +L + G L + K + + YFE+V P NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFF-----GKGSDAMAYFESVGFSPSF--PMNPADF 314
Query: 955 MLEVTSPV-------EESRLGVDFAEIYRRSNLFQ-RNRELVESLSKP-------SPSSK 999
+L++ + V E + V + + + L + + +E P +S
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1000 KLNFSTKYS--QSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICW 1052
K + S+ ++ NQF + L +++L ++ + +R F + +L+ G + W
Sbjct: 375 KEHRSSDRISISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWW 428
|
Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 6e-39
Identities = 147/559 (26%), Positives = 262/559 (46%), Gaps = 70/559 (12%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
TIL+ ++G+ P + +LGP SGK+TLL ALAGR+ + +G I N + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
RT +V+Q D +TVRETL F S + L ++EKI
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEKI------------- 179
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGPARV 198
LV E ++ LGL C +T++G+ ++GISGG++KR++ E+L+ P+ +
Sbjct: 180 -----------LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEGQI 257
L +DE ++GLD++ Y+++ L + A G T++ S+ QP+ Y++FD V++LSEG+
Sbjct: 228 LILDEPTSGLDATAAYRLVLTL--GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 258 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT---------SKKDQEQYWSNPYLPYR 308
++ G + +F S+GFS N ADFL ++ S++++ + Y
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYN 345
Query: 309 YISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 368
+ K A H + + + + +S S + + S LL+ + L
Sbjct: 346 TLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQ-----RSL 400
Query: 369 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF-SMVIILFNGF 427
+++ + Q++ AL+ +++ H D LG L+F S+ +F F
Sbjct: 401 KERKHESFNTLRVFQVIAAALLAGLMWW-----HSDFRDVQDRLGLLFFISIFWGVFPSF 455
Query: 428 TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS-----IPTSLIESGFWVAVTYYVIG 482
V + + + K R S +YT+ S+ ++ +P LI ++ VTY++ G
Sbjct: 456 NSVFVFPQERAIFVKER-----ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510
Query: 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 542
P + F LL+ +S GL +G+ + A+T + ML + GGF + +
Sbjct: 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK 570
Query: 543 DSIPKWWIWGFWVSPLMYA 561
+P W ++S Y+
Sbjct: 571 --LPSCMAWIKYISTTFYS 587
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 8e-39
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 40/251 (15%)
Query: 13 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 72
+ IL+D+S + ++ +LG SGKTTLL A++GR+ SG+I +NG
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 73 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 132
K + AYV Q D + +TVRETL +
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------------------- 108
Query: 133 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-EL 191
L + + + + ++ + L A T +G ++KGISGG+++R++ +L
Sbjct: 109 ----------RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158
Query: 192 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVI 250
L P +VL +DE ++GLDS T ++ L R VI ++ QP + + LFD ++
Sbjct: 159 LWDP-KVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDLFRLFDRIL 215
Query: 251 LLSEGQIVYQG 261
LLS G+IVY G
Sbjct: 216 LLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-33
Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 56/309 (18%)
Query: 1 MTEAL-LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 58
M E + +R L Y G++ T LD +S + P + LLGP +GKTTLL LAG L
Sbjct: 1 MIEVIEVRNLTKKYGGDK---TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-- 55
Query: 59 HLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 116
SG+I G+ + R YV Q+ E+TVRE L+F + G+ +
Sbjct: 56 -KPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA- 113
Query: 117 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176
E+I E ++++ GL+ A+ V +
Sbjct: 114 ------EERI---------------------------EELLELFGLEDKANKKV-----R 135
Query: 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS-- 234
+SGG K+RL+ L+ +L +DE ++GLD + +I + L+ + T ++S
Sbjct: 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSC--PKRKNVADFLQEVTS 292
+L+ EA EL D VI+L++G+I+ +G + + F G P+R +A+ L+ +
Sbjct: 196 ILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKL 252
Query: 293 KKDQEQYWS 301
K +E+
Sbjct: 253 VKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQ 768
++ +L + +G +PG + ++G G+G +TL+ LA R G + +EGDI+ +G P ++
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 769 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
E + Y + D+H P LTV E+L F+ +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------- 111
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
G + G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R +
Sbjct: 112 ------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 887 N-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
+ T +++Q S +I++ FD++L + G IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--R 773
+++ G + L+G +GAGKTT + +L G R T G YI+GY R + A +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQ 75
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
GYC Q D LTV E L F A L+ + + VE ++ ++ LT +
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR 132
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
LS +++L++A+ L+ PS++ +DEPTSGLD + + + + GR+I+
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSII 186
Query: 894 CTIH 897
T H
Sbjct: 187 LTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 7e-29
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 575 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQ 634
W K SN +LGEA+L+ R LF E+YWYWIGVGA+LG+T+LFN LFT L+YLNPLGK
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 635 QAVVS 639
QA+VS
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--- 770
L +++ + G +VG +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 771 FARISGYCEQNDIHSP-----GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
R G QN P G TV E + F E E+E +R VEE +ELV L
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIE-ER--VEEALELVGLE 125
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
L LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++ +
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
G+TI+ H + E D ++ ++ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 9e-27
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQ 768
+ + L V+ PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
+ R GY Q P TV E L + AWL+ I + +A V+EV+ELV L +
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
IG LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 889 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
R ++ + H D+ +++ + G+L++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQE 769
+L +++ + G +T ++G +G+GK+TL+ LAG G++ + G ++
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE- 73
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSA-----WLRLPSEIELETQRAFVEEVMELVEL 824
A+ Y Q+ GLTV E +L PS+ + E VEE +EL+ L
Sbjct: 74 -LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGL 128
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
L+ ++ LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 885 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ G T+V +H ++ + D L+ +K G+++ G
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYA-DHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 27/234 (11%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EG 757
+E++ V +L +++ + G +TAL+G +GAGK+TL+ + G ++ G
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-----LLKPSSG 59
Query: 758 DIYISGYPKRQETFARISGYCEQNDIHSPG--LTVLESLLFSA-----WLRLPSEIELET 810
+I I G P R+ GY Q +TV + +L W R ++ +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD--- 116
Query: 811 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870
+ V+E +E V + L IG LS Q++R+ +A L NP ++ +DEP +G+
Sbjct: 117 -KEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
D + ++ + G+T++ H + + FD ++ + R LI +GP
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 775
+V+ +PG A+VG +GAGK+TL+ + G + T G I + G P +E RI
Sbjct: 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KRI- 70
Query: 776 GYCEQN---DIHSPGLTVLESLL-----FSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
GY Q D P ++V + +L R S+ +A V+E +E V L+ L
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKA----DKAKVDEALERVGLSEL 125
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
+ IG LS Q++R+ +A LV +P ++ +DEP +G+D + + +R +
Sbjct: 126 ADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
G TI+ H + + E FD +L + R ++ +G
Sbjct: 181 EGMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 6e-24
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 75
+S +L ++SG +P LT ++GP +GK+TLL ALAGR L VSG++ NG +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 76 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 110
+ YV Q D +TVRETL FA + +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-23
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 65/206 (31%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 770
L NV+ + G + ALVG +G+GK+TL+ +AG G+I I G + E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
R GY Q LSG
Sbjct: 71 LRRRIGYVPQ----------------------------------------------LSGG 84
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+++ R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GR
Sbjct: 85 ------------QRQ-RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRG 916
T++ H P + D ++ +K G
Sbjct: 132 TVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 5e-23
Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 233
L+G+SGG++KR++ LV +LF+DE ++GLDSS+ Q++ L+ A G T+I
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL--ADTGRTIIC 166
Query: 234 SLLQPAPEAYELFDDVILLSEGQIVYQG 261
S+ QP+ E +ELFD ++LLS+G+++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.9 bits (240), Expect = 9e-23
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 53/203 (26%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFAR 773
+++ G + L+G +GAGKTTL+ ++ G + G+I + G K E R
Sbjct: 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEVKR 73
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
GY + LTV E+L S G
Sbjct: 74 RIGYLPEEPSLYENLTVRENLKLS------------------------------GG---- 99
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
++RL +A L+ +P ++ +DEPTSGLD + +R + G+TI+
Sbjct: 100 ----------MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 894 CTIHQPSIDIFESFDELLFMKRG 916
+ H + D + + G
Sbjct: 150 LSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 24/225 (10%)
Query: 709 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP 765
R L +V+ G L+G +G+GK+TL+ +L G +++ G++ + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLD 67
Query: 766 KRQET----FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
E + G QN D G TV + + F L + E V E +E
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLG--LPREEIEERVAEALE 124
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
LV L L LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 125 LVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 881 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
++ + G+TI+ H + E D ++ + G+++ G
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 46/212 (21%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFA 772
+L +++ + G + ++G +GAGK+TL+ LAG K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKD------- 62
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
L S EL + A+V + +EL+ L L+
Sbjct: 63 ---------------------------LASLSPKELARKIAYVPQALELLGLAHLADR-- 93
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 891
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R + G+T
Sbjct: 94 ---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 892 IVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
+V +H ++ D ++ +K G ++ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEG-D 758
K G+ ++++ L +V G A+VG SG+GK+TL+++L G + T G +I G D
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 759 IYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVE 816
+ + + + G+ QN + P LTVLE++ LP I ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVE------LPLLIAGKSAGRRKR 120
Query: 817 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
EL+E+ L L+ + LS Q++R+ IA L+ NP I+ DEPT LD++ A
Sbjct: 121 AAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 877 IVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
V+ +R + G+TI+ H P ++ + D ++ +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 9e-22
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI- 774
L +V+ + PG AL+G SGAGK+TL+ L G G + I G + +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 775 -----SGYCEQNDIHSPGLTVLESLL---------FSAWLRLPSEIELETQRAFVEEVME 820
G Q L+VLE++L + + L + E QRA +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALE 130
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
V L + LS Q++R+ IA L+ P ++ DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 881 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
++ I G T++ ++HQ + E D ++ +K G +++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 3e-21
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 768
+V+ + RPG + L+G +GAGKTTL ++++G R T G ++ I+G P +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 769 -ETFARISGYCEQNDIHSPGLTVLESLL-------FSAWLRLPSEIELETQRAFVEEVME 820
TF + P LTVLE+++ S L + E R EE++E
Sbjct: 78 GRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
V L L+ G LS Q++RL IA L +P ++ +DEP +GL+ +
Sbjct: 130 RVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 881 TVRNIVNTGRTIV 893
+R + G T++
Sbjct: 185 LIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-21
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ 768
+L +V+ G + AL+G SG+GK+TL+ +AG + G I I G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDEL 71
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
R G Q+ P LTVLE++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-N 887
GLS Q++R+ +A L +P ++ +DEPTS LD V ++++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
G T+V H + D ++ ++ G
Sbjct: 150 LGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 6e-21
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQ 768
+ L +++ PG AL+G SG GKTTL+ ++AG + G+I I G P +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPER 71
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
R G Q+ P LTV E++ F LR + RA V E++ELV L L
Sbjct: 72 ----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK---AEIRARVRELLELVGLEGLL 124
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 887
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++ +
Sbjct: 125 NRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
G T + H + D + M G
Sbjct: 180 LGITTIYVTHDQE-EALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 8e-21
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ 768
++Q L V+ + G A+VG SG+GK+TL+++L G R T G + IS +++
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 769 ETFAR---ISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
R I G+ Q+ + P LT LE++ L + + + +R EE++E V
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELPL---LLAGVPKKERRERAEELLERVG 129
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L + LS Q++R+ IA L +P I+ DEPT LD+ VM +R
Sbjct: 130 LGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 884 NIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G TIV H P ++ E D ++ ++ G
Sbjct: 185 ELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
L+ L + ++ LDD+S I+ L++GP SGK+TLL L G LG SG+
Sbjct: 2 LKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGE 57
Query: 66 ITYNGHGFKEFVPP---RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 121
+ +G + R V Q D Q TV E + F
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL---------------- 101
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181
+ G+ +E + VE ++++GL+ D L SGG
Sbjct: 102 ---ENLGLPEEEIEER---------------VEEALELVGLEGLRDRSP--FTL---SGG 138
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQP 238
QK+R+ +L +L +DE + GLD + ++++ LK G T+I + L
Sbjct: 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLD- 195
Query: 239 APEAYELFDDVILLSEGQ 256
EL D VI+L +G+
Sbjct: 196 --LLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---- 769
Q L N+ PG A++G SGAGK+TL+ + G I + G +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 770 --TFARISGYCEQNDIHSPGLTVLESLLF----------SAWLRLPSEIELETQRAFVEE 817
R G Q+ LTVLE++L S R E + +RA
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE---DKERAL--S 128
Query: 818 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 877
+E V L + + LS Q++R+ IA L P ++ DEP + LD + +
Sbjct: 129 ALERVGLADKA-----YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 878 VMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
VM ++ I G T++ +HQ +D+ + + + + + GE+++ G
Sbjct: 184 VMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 2e-19
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFA 772
L + + G LVG SGAGK+TL+ ++ + G I +S R +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 773 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R G Q+ P V E++ F E+ R + V +EL LS
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ I G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 892 IVCTIHQPSI 901
+V H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-19
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 771
+L +++ PG A+VG SG+GK+TL+ +L G +G I + G +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASL 545
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R GY Q+ LFS +R I L A EE++E +L +
Sbjct: 546 RRQVGYVLQDP-----------FLFSGSIR--ENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 832 IGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
LP G LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 883 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
I GRT++ H+ S S D ++ + +G
Sbjct: 653 LQI-LQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 9e-19
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
+L +++ G + AL G +GAGKTTL +LAG +++ G I + +R+++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-- 72
Query: 773 RISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL------- 824
GY Q+ D +V E LL E++ ++A E V++ ++L
Sbjct: 73 --IGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQA--ETVLKDLDLYALKERH 123
Query: 825 -TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
SLSG Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSLSGG-------------QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G+ ++ H + + D +L + G
Sbjct: 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 61/212 (28%)
Query: 708 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767
VL+D V++T +PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 17 VLKD-----VSLT--IKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLR 67
Query: 768 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL 824
E+ + Y Q + LFS +R E
Sbjct: 68 DLDLESLRKNIAYVPQ-----------DPFLFSGTIR---------------------E- 94
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R
Sbjct: 95 -------------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 885 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G+T++ H+ S D ++ + G
Sbjct: 142 LAK-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 26/228 (11%)
Query: 700 PVELKQEGVL---EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 756
P+E+ E + D L ++ + G LTALVG SGAGK+TL+++L G +
Sbjct: 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQ 375
Query: 757 GDIYISGYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 813
G+I ++G R E + + + QN G T+ E++L + EI
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEII------ 428
Query: 814 FVEEVMELVELTSLSGALIGLPGI-----NGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868
++ L GL + GLS Q +RL +A L++ S++ +DEPT+
Sbjct: 429 ---AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
LDA I+++ ++ + +T++ H+ D ++ + G
Sbjct: 486 HLDAETEQIILQALQEL-AKQKTVLVITHRLE--DAADADRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-18
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR 767
++L + A G + AL+G +GAGK+TL+ L G R G + D Y ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 768 QETFARIS-GYCEQN---DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
R G Q+ + + V + + F SE E+ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEV---ERRVREALTAVG 116
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
+ L LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 884 NIVNTGRTIVCTIH 897
+ G T+V + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 9e-18
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQE 769
++Q + +V+ G +T L+G +GAGKTTL+ ++A G + I G R
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDP 70
Query: 770 TFAR--ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
+F R I + +++ LT E+L + A L S E++ A + E+ + ++L
Sbjct: 71 SFVRRKIGVLFGERGLYAR-LTARENLKYFARLNGLSRKEIK---ARIAELSKRLQLLEY 126
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
+G ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + N
Sbjct: 127 LDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
GR ++ + H ++ D ++ + + GE++ G
Sbjct: 182 EGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 768
+V+ RPG + L+G +GAGKTTL +++ G + + G +I I+G P +
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81
Query: 769 -ETFARISGYCEQNDIHSPGLTVLESLL--------FSAWLRLPSEIELETQ-RAFVEEV 818
TF Q PGLTVLE++ S L P + E + R E+
Sbjct: 82 ARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
+E V L L+ G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 134 LEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 879 MRTVRNI-VNTGRTIV 893
+R + G TI+
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 770
Q L +V G + A++G SGAGK+TL+ L G +G I+ + I+ ++
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 771 FARIS-GYCEQNDIHSPGLTVLESLLF------SAW---LRLPSEIELETQRAFVEEVME 820
R G Q P L+VLE++L S W L S+ + +A + +E
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK--EDKAQAL--DALE 133
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
V + + LS Q++R+ IA LV P I+ DEP + LD +A VM
Sbjct: 134 RVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 881 TVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+++I G T++ +HQ +D+ + + + + + G +++ GP
Sbjct: 189 ILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
L ++ G L G +G+GKTTL+ ++AG G I+ D P E
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
+ +N + P LTV E+L F W L + + +E V L L
Sbjct: 77 YLG---HRNAMK-PALTVAENLEF--WAAF-----LGGEELDIAAALEAVGL----APLA 121
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G +
Sbjct: 122 HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 893 VCTIHQP 899
+ H P
Sbjct: 181 IAATHIP 187
|
Length = 207 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 3e-17
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPK 766
R L V+ PG ALVG SGAGK+TL+++L G G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
+++ + Q+ G T+ E++ + + A + E +E L
Sbjct: 391 -ADSWRDQIAWVPQHPFLFAG-TIAENIRLA---------RPDASDAEIREALERAGLDE 439
Query: 827 LSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
AL IG G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 880 RTVRNIVNTGRTIVCTIHQPSI 901
+R + GRT++ H+ ++
Sbjct: 499 EALRALAQ-GRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L ++ + +PG A+VG +GAGKTTL+++L +G I I G R + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSL- 75
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
++ I G+ + ++ LFS + I L A EEV+E + ++ LP
Sbjct: 76 ----RSMI---GVVLQDTFLFSGTIM--ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLP 126
Query: 836 ---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
LS +R+ L IA ++ +P I+ +DE TS +D ++ + ++
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
GRT + H+ S I + D++L + G
Sbjct: 187 K-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 7e-17
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQN 781
+ G L+G +GAGKTT + +L G G I + G P + AR G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 782 DIHSPGLTVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 840
D P TV E+LL F + L + RA V ++E +L + + A +G L
Sbjct: 89 DNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----EL 139
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
S ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+++ G+TI+ T H
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 55/255 (21%)
Query: 13 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 72
+ +DDLS + + LLG +GKTT L L G SG NG+
Sbjct: 9 TYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTAYINGYS 65
Query: 73 FKE--FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 130
+ ++ Y Q D E+TVRE L F + +G+
Sbjct: 66 IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL-------------------- 105
Query: 131 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 190
P ++ VE ++++LGL A+ +SGG K++L+
Sbjct: 106 PKSEIK--------------EEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAI 146
Query: 191 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----SLLQPAPEAYELF 246
L+G VL +DE ++GLD ++ I + + G ++I S+ EA L
Sbjct: 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----EAEALC 199
Query: 247 DDVILLSEGQIVYQG 261
D + ++S+G++ G
Sbjct: 200 DRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 67/276 (24%), Positives = 110/276 (39%), Gaps = 60/276 (21%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M + L + GNR +L+D+S + +T L+GP +GK+TLL A+ G L
Sbjct: 2 MPMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS- 57
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDMI 117
SG+I G ++ YV Q+ D +TV++ +
Sbjct: 58 --SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVV---------------- 98
Query: 118 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177
L R K F +K V+ ++ +G++ D +G+
Sbjct: 99 -LLGRYGK-------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE----- 139
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVIS 234
+SGGQK+R+ L +L +DE G+D + Y ++K L+ +G TV+
Sbjct: 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-----EGKTVLM 194
Query: 235 L---LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+ L FD VI L ++ GP VL
Sbjct: 195 VTHDLGLVM---AYFDRVICL-NRHLIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----K 766
L +++ + G L AL+G SGAGK+TL+ ++AG +T G I ++G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVS 70
Query: 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVMELVEL 824
R G+ Q+ P +TV +++ F +R PSE E RA VEE++ LV+L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAE---IRARVEELLRLVQL 127
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
L+ LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 128 EGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 885 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G T V H + E D ++ + +G
Sbjct: 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-16
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 14 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGH 71
K +L+++SG ++P LT L+G +GKTTLL LAGR G ++G+I NG
Sbjct: 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGR 71
Query: 72 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 111
+ R++ YV QQD +TVRE L F+ +G+
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 781
+ G + +G +GAGKTT M ++ G + G I Y K E RI
Sbjct: 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRRIGAL---- 77
Query: 782 DIHSPG----LTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
I +PG LT E+L A L + + ++EV+++V L + +
Sbjct: 78 -IEAPGFYPNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDSAKKKVK--- 125
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + ++ + G T++ +
Sbjct: 126 --GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183
Query: 897 HQ 898
H
Sbjct: 184 HL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 55/270 (20%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L G + ILDDLS I +T +LGP SGK+TLL LAG L SG+
Sbjct: 5 VENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL---KPKSGE 58
Query: 66 ITYNGH-----GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+ +G KE + AYV Q +TV E +
Sbjct: 59 VLLDGKDIASLSPKELA--KKLAYVPQSPSAPFGLTVYELV------------------- 97
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
+ G P + F ++ +VE +++LGL+ AD V + +SG
Sbjct: 98 -----LLGRYP------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSG 141
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSST---TYQIIKYLKHSTRALDGTTVISLLQ 237
G+++R+ L +L +DE ++ LD + ++++ L G TV+ +L
Sbjct: 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK----GLTVVMVLH 197
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
A D +ILL +G+IV QG VL
Sbjct: 198 DLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L NV+ R G A++G G+GK+TL+ +LAG G + + G RQ A +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLR 77
Query: 776 ---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
GY Q + LF LR I L A E ++ EL ++ +
Sbjct: 78 RNIGYVPQ-----------DVTLFYGTLR--DNITLGAPLADDERILRAAELAGVTDFVN 124
Query: 833 GLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
++ +T++ H+PS+ + D ++ M G
Sbjct: 185 QLL-GDKTLIIITHRPSLL--DLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 4e-16
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------P 765
+L V R G + A++G SG+GK+TL+ ++ G R G ++ I G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 766 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
R G Q+ LTV E++ F LR + + E R V E +E V L
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGL- 126
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
GA P LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R++
Sbjct: 127 --RGAEDLYPA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182
Query: 886 VNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
G T + H F D + + G+++ G
Sbjct: 183 KKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-16
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFARISGYCE 779
R G + +G +GAGKTT + +L R T G ++GY + R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q LT E+L L + E E +RA EE++EL EL + +G
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAE-ERA--EELLELFELGEAADRPVG-----T 124
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G TI+ T H
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-16
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 775
+T + G SGAGK+TL+ +AG + GG I G + P +Q R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ----RKI 77
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
G Q P L V E+L F + E R V+E+++L+ L L
Sbjct: 78 GLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR----- 127
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
LS +++R+ +A L A P ++ +DEP S LD ++ ++ I
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------N 180
Query: 896 IHQPSIDIFESFDEL------LFMKRGGELIYAG 923
++ P I + E + + G L Y G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 767
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +R
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQR--AFVEEVMELVE 823
AR EQ+ + LTV + + R+P S ++ A V+ + E
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L+ L+ ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ TG T+V +H +++ S+ + + + GG ++ AGP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-16
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 774
+++ + G L+G SG GKTTL+ ++AG + + G I I+ P + R
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK----RP 78
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
G Q+ P +TV E++ F L++ +++ +A VEE +ELV L +
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP-- 134
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIV 893
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T V
Sbjct: 135 ---HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191
Query: 894 CTIHQPSIDIFESF---DELLFMKRG 916
H D E+ D + M G
Sbjct: 192 YVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-16
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 18/203 (8%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCEQ 780
PG +T L+G +GAGKTT + +LAG G + G+ +E R G+
Sbjct: 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEARRRLGFVSD 85
Query: 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 840
+ LT E+L + A L ++ + A +EE+ + + + L +G G
Sbjct: 86 STGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GF 137
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900
ST R+++ IA LV +P ++ +DEPT+GLD A + +R + G+ I+ + H
Sbjct: 138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197
Query: 901 IDIFESFDELLFMKRGGELIYAG 923
++ D ++ + R G ++Y G
Sbjct: 198 -EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 723 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY------PKRQETFARISG 776
G L+G SG GK+TL+ ++AG + G+I I G P+++
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGI-----A 78
Query: 777 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
QN P +TV E++ F L+L + E + V+EV +L+ L L
Sbjct: 79 MVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLNRKP---- 131
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVC 894
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ ++ G T +
Sbjct: 132 -LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGTTTIY 189
Query: 895 TIHQPSIDIFESFDELLFMKRG 916
H ++ D ++ M G
Sbjct: 190 VTHDQ-VEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 7e-16
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 51/204 (25%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
+L NV+ + PG A++G SG+GK+TL ++ G R T G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV----------------- 59
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R+ G DI L V + + EL SG++
Sbjct: 60 RLDGA----DISQWDPNEL--------------------GDHVGYLPQDDEL--FSGSIA 93
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
N LS QR+RL +A L NP I+ +DEP S LD + + + + G T
Sbjct: 94 E----NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 893 VCTIHQPSIDIFESFDELLFMKRG 916
+ H+P S D +L ++ G
Sbjct: 150 IVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 8e-16
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 781
G ALVG SG GK+TL+ ++AG R T G++ + G P R GY Q
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR--GYVFQQ 81
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841
D P LTVL+++ L+ + E E EL+EL LSG P LS
Sbjct: 82 DALLPWLTVLDNVALGLELQGVPKAEAR------ERAEELLELVGLSGFENAYPH--QLS 133
Query: 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPS 900
R+R+ +A L +P ++ +DEP S LDA + + +I TG+T++ H
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH--- 190
Query: 901 IDIFESFDELLFM 913
DI DE +F+
Sbjct: 191 -DI----DEAVFL 198
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 9e-16
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFA 772
L +V+ RPG AL+G +GAGK+TL +L EG I ++G+ R+ A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGAL 831
R+ +Q + L+V ++L + A L L RA + E++ + L +
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRA----EARARIAELLARLGLAERADDK 129
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 890
+ L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR + G
Sbjct: 130 VR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927
+++ H +D E+ D L+ + R G ++ G
Sbjct: 185 SVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 61/247 (24%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
SK+ + D+S +T LLG +GKTTLL +A L
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-------------------- 52
Query: 77 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
+P + D VR + G G Y +T AR E+L
Sbjct: 53 IPDSGKVTIDGVDTVRDPSFVRRKI---GVLFGERGLYARLT--AR----------ENLK 97
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
F + L ++ + + K L L D VG S G K+++ LV
Sbjct: 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256
+L +DE ++GLD T + ++K +G VI E L D VI+L +G+
Sbjct: 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGE 210
Query: 257 IVYQGPR 263
+V +G
Sbjct: 211 VVLEGSI 217
|
Length = 245 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF---A 772
V+ R G + L+G +GAGKTT + +L + T G ++G+ +E
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGAL 831
RI G Q+ LT E+L A L +P +R ++E+++ V L + L
Sbjct: 74 RI-GIVFQDLSVDDELTGWENLYIHARLYGVPGAER--RER--IDELLDFVGLLEAADRL 128
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 890
+ S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 891 TIVCTIH 897
TI+ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----KRQETFAR 773
+V+ G +T+++G +GAGK+TL+ + R G+I I G +E +
Sbjct: 19 DVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELAKK 76
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQ-RAFVEEVMELVELTSLSGAL 831
+S ++N I+S LTV + + F R P S+ L + R + E +E + L LS
Sbjct: 77 LSILKQENHINSR-LTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY 132
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 890
+ + LS QR+R IA+ L + V +DEP + LD + + +M+ +R + + G+
Sbjct: 133 L-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187
Query: 891 TIVCTIHQPSIDI-FESF--DELLFMKRGGELIYAGP 924
TIV +H DI F S D ++ +K G+++ G
Sbjct: 188 TIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 48/267 (17%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---GHHLQV 62
L R L D+S I LL+GP SGK+TLL L G L + V
Sbjct: 6 AENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 63 SGKITYNGHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 121
G T + E + V Q D Q+ TV + + F + G+
Sbjct: 64 DGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------- 110
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181
RE+I V ++++GL+ D + SGG
Sbjct: 111 PREEIEER-----------------------VAEALELVGLEELLDRPPFNL-----SGG 142
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241
QK+R+ +L +L +DE + GLD ++++ LK + G T+I +
Sbjct: 143 QKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLEL 201
Query: 242 AYELFDDVILLSEGQIVYQGPRVSVLD 268
E D V++L +G+I+ G + +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 4e-15
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP---KRQE 769
L V+ PG A++G SG+GK+TL+ LAG +++ G++ + G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAG-----LLDPLQGEVTLDGVPVSSLDQD 405
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
R C Q D H TV E+L + A EE+ +E L+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRLAR------------PDATDEELWAALERVGLAD 452
Query: 830 ALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
L LP GL T +R+RL +A L+A+ I+ +DEPT LDA A +
Sbjct: 453 WLRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 879 MRTVRNIVNTGRTIVCTIHQP 899
+ + +GRT+V H
Sbjct: 511 LEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 4e-15
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARISGYCE 779
+ G LVG SG+GK+TL + G + T G I +G + + ++ +
Sbjct: 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVF 88
Query: 780 QNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---------LS 828
Q+ + S P +T+ E + + + E ++ V ++ V L LS
Sbjct: 89 QDPMSSLNPRMTIGEQIAEPLRIHGKLSKK-EARKEAVLLLLVGVGLPEEVLNRYPHELS 147
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
G G QR+R+ IA L NP ++ DEPTS LD A ++ ++ +
Sbjct: 148 G---------G----QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQET 770
+LL V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQRAFVEEVMELVELTSLS 828
AR QN + TV E + R+P S E E + + +L+ L+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 829 GALIGLPGINGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTV 882
G LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 883 RNIVNTGRTIVCTIH 897
R + G ++ +H
Sbjct: 185 RQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 772
L +V+ G L G SGAGK+TL+ ++ G R T G I+ +S R+ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 773 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R G Q+ P TV E++ P + + R V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
LP + LS +++R+ IA +V P+++ DEPT LD + +MR I G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 892 IVCTIH 897
++ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 9e-15
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 29/238 (12%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 760
+ELK V + ++L +++ PG A+VG +GAGKTTL+ +L G GD+
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVT 89
Query: 761 ISGYPKRQETF-----ARISGYC--EQNDIHSPGLTVLESLLFSAW------LRLPSEIE 807
+ G + RI G E ++ TV + +L S + +
Sbjct: 90 LLGRRFGKGETIFELRKRI-GLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLT-- 145
Query: 808 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867
A + ++EL+ L+ G LS +++R+ IA LV +P ++ +DEP
Sbjct: 146 -AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 868 SGLDARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
GLD A ++ + + + ++ H +I F L + + GE++ G
Sbjct: 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRL-LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 765
E L +L V + G A+VG SG+GK+TL+ VLAG G++ + G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 766 ---KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 822
R AR G+ Q+ P LT LE++ LP E+ E+ L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALL 131
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
E L L P LS +++R+ +A P ++F DEPT LD + +
Sbjct: 132 EAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 883 RNIV-NTGRTIVCTIHQPSI 901
+ G T+V H P +
Sbjct: 190 FALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 770
L +++ G +TAL+G SG GK+TL+ +L G EG++ + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 771 FARIS-----GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
+ G Q N ++ +++ + L E +R VEE +
Sbjct: 74 VDVLELRRRVGMVFQKPNPFP---GSIYDNVAYGLRLHGIKLKEELDER--VEEALRKAA 128
Query: 824 LT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A + +
Sbjct: 129 LWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI 184
Query: 883 RNIVNTGRTIVCTIH 897
+ TIV H
Sbjct: 185 AEL-KKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 52/247 (21%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 77
LDDLS + P LLGP GKTTLL +AG L+ SG+I +G V
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-----LERPDSGEILIDGRDVTG-V 67
Query: 78 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
PP R V Q +TV E + F + +GV E+ R
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRAR------------ 110
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
V +++++GL+ + +SGGQ++R+ L
Sbjct: 111 -----------------VRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALARE 148
Query: 196 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
+L +DE +S LD+ ++ + LK R L G T I + EA L D + +++E
Sbjct: 149 PSLLLLDEPLSA-LDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNE 206
Query: 255 GQIVYQG 261
G+IV G
Sbjct: 207 GRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-14
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 774
+V+ R G LVG SG+GK+TL +LAG + G I + R
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 775 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 825
Q+ S P +TV + L LR+ +RA V E++ELV L
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 826 --SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
LSG QR+R+ IA L P ++ +DEP S LD A V+ ++
Sbjct: 427 PHELSGG-------------QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 884 NI 885
++
Sbjct: 474 DL 475
|
Length = 539 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 781
G A++G SG GK+TL+ ++AG + T G + D P GY Q
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQE 80
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841
D P LTVL+++ LR S+ E E EL+EL L+G P LS
Sbjct: 81 DALLPWLTVLDNVALGLELRGKSKAEAR------ERAKELLELVGLAGFEDKYPH--QLS 132
Query: 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIV 893
R+R+ IA L P ++ +DEP LDA + + + T +T++
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-14
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
+ +L +++ + PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 770 TFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
+ + G Q + LLFS +R I L A EE+ E ++L +
Sbjct: 397 SLDSLRKRIGIVSQ-----------DPLLFSGTIR--ENIALGRPDATDEEIEEALKLAN 443
Query: 827 LSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 877
+ LP LS QR+RL IA L+ NP I+ +DE TS LD A+
Sbjct: 444 AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 878 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ ++ ++ GRT + H+ S ++ D ++ + G
Sbjct: 504 IQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 9e-14
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ--ET 770
L +++ G + G +GAGKTTL+ +LAG R G++Y G P + E+
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEVYWQGEPIQNVRES 72
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ + Y LT LE+L F W R T + E + V L L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGL--- 123
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
LP + LS Q++R+ +A ++ + +DEP + LD A++ + G
Sbjct: 124 -EDLP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181
Query: 891 TIVCTIHQP 899
++ T HQP
Sbjct: 182 IVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L V+ RPG + AL+G +GAGK+TLM +L+G G+I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 774 ISGYCEQND-----IH-----SPGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELV 822
S + +H P L+V E++ I+ + R E++ +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
L L+G LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 883 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
R + G I+ H+ ++FE D + ++ G
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYP-KRQETFAR-------ISG 776
G + AL+G SG+GK+TL+ L+G TG I + G +R+ AR +G
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG 89
Query: 777 YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSG 829
Y Q L+VLE++L A P + QRA L LT +
Sbjct: 90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRA-------LQALTRVGM 142
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 888
++ LS Q++R+ IA L+ ++ DEP + LD +A IVM T+R+I N
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 889 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
G T+V T+HQ +D + E + R G + Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 705 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764
QEG L+ ++L V+ + G + A+VG SG+GK+TL+ +L G G++ +G
Sbjct: 12 QEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQ 67
Query: 765 PKRQETFARIS-------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 817
+ + + G+ Q P T LE++ + S E + +RA
Sbjct: 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERA---- 122
Query: 818 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 877
E++E L + P LS +R+R+ IA LV PS+V DEPT LD A I
Sbjct: 123 -YEMLEKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179
Query: 878 V---MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
+ M + +NT +V H ++ + D +L MK G
Sbjct: 180 IFDLMLELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-13
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS------GY 777
RPG L+GV+GAGKTT +L G T + GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 778 CEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
C Q D LT E L A LR +P+E E ++ + L L+ + L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAE---EIEKVANWSIQSL-GLSLYADRLAGT-- 2070
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
S +++L+ A+ L+ P +V +DEPT+G+D +A ++ T+ +I+ GR +V T
Sbjct: 2071 ---YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 897 H 897
H
Sbjct: 2128 H 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 768
L ++ G + G +G GKTTL+ +LAG R G + + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG--TALAEQR 68
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
+ R Y P L+ LE+L F W + + +E+ + V LT
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDALAAVGLTGFE 121
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 889 GRTIVCTIHQP 899
G ++ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI-----SGYPK 766
R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ + EG + + G +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASE 74
Query: 767 RQETFARIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
++ R + GY Q N + LT +++ + L L + + R ++E V
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 824 LTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
L G + P + LS Q++R+ IA LV P +V DEPT+ LD+++ V+ +
Sbjct: 131 L----GDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 883 RNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + G TI+ H I + D ++ M+ G
Sbjct: 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQND 782
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 783 IHSPGLTVLESLL-FSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 840
TV E+LL F + + + EIE A + ++E L S + A + L
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMSTREIE-----AVIPSLLEFARLESKADARVSD-----L 173
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
S ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 13/210 (6%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKR 767
L +V+ G L AL+G SG+GKTTL+ ++AG + +G I+ G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
+ R G+ Q+ +TV +++ F LR+ E + +V EL++L L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQL 126
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R + +
Sbjct: 127 DWLADRYP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 888 -TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
T V H + E D ++ M +G
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-13
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARIS---GY 777
G + AL+G +GAGKTTL+ + G ++G I I+G P R GY
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHERARAGIGY 79
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPG 836
+ P LTV E+LL A+ R ++ +A +E V EL L L G
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKR-----KARLERVYELFPRLKERRKQLAGT-- 132
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
LS +++ L IA L++ P ++ +DEP+ GL + + +R + + G TI+
Sbjct: 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 38/222 (17%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKR 767
+V+ PG + +VG SG+GKTTL+ ++GR G + D+Y +R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 768 QETFARIS-GYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
+ R G+ QN S G + E L+ + R I RA ++ +E
Sbjct: 84 R-RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNI-----RAEAQDWLE 136
Query: 821 LVELTSLSGALIGLPGINGL----STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
VE I L I+ L S ++RL IA LV P +VFMDEPT GLD A
Sbjct: 137 EVE--------IDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 877 IVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
++ +R +V G +V H ++ + D L+ MK+G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KR 767
D +L N++ +PG + +VG SG+GK+TL ++ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALAD 70
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
R G Q E++LF+ +R I L +E V +E L
Sbjct: 71 PAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERV---IEAAKL 114
Query: 828 SGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
+GA ++G G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
Query: 875 AAIVMRTVRNIVNTGRTIVCTIHQPS 900
+MR + +I GRT++ H+ S
Sbjct: 174 EHAIMRNMHDIC-AGRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 53/273 (19%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFVPP 79
LDD+S I+ L LLGP +GK+TLL +AG +G+I NG +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74
Query: 80 RTSA--YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
R +V Q MTV + + F + + + +E R ++ E L +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVE-----ELLRL 124
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
L G + D +SGGQ++R+ L +
Sbjct: 125 V----QLEG-----------------------LADRYPAQLSGGQRQRVALARALAVEPK 157
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
VL +DE LD+ ++ ++L+ G T + + EA EL D V++L++G+I
Sbjct: 158 VLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
Query: 258 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 290
GP V D P + VA FL EV
Sbjct: 217 EQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 763
K G E L +L V + G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 764 YP-------KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE 816
P R + A+ G+ Q+ + P L LE++ A LR S +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK--- 128
Query: 817 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
L+E L L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ---ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 4e-13
Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 53/252 (21%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
K+ L +S + + LLG +GKTTLL + G + SG+I ++G +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITG-L 70
Query: 78 PP--RTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 132
PP R AYV + +TV E L R ++ +
Sbjct: 71 PPHERARLGIAYVPEGRRIFPRLTVEENLLLGA-------------YARRDKEAQERDLE 117
Query: 133 EDLDIF--MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 190
E ++F +K + A TL SGG+++ L
Sbjct: 118 EVYELFPRLKER-------------------RNQRAGTL---------SGGEQQMLAIAR 149
Query: 191 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250
L+ ++L +DE S GL +I + +K R G T++ + Q A A E+ D
Sbjct: 150 ALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIADRGY 208
Query: 251 LLSEGQIVYQGP 262
+L G+IV G
Sbjct: 209 VLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 8e-13
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 771
Q L +V G L AL+G SG+GK+TL+ ++AG + G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 772 A-RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
R G+ Q+ LTV +++ F +R + ++ +A VEE++ELV+L L
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI---KARVEELLELVQLEGLGDR 126
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-13
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 771
LL ++ F G +T L+G +G+GK+TL+ +L GR EG+I + P + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL----ETQRAFVEEVMELVELTSL 827
AR Y Q + G+TV E A R P L R VEE + LV L L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRE---LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTVR 883
+ L+ + LS +R+R IA+ + + + +DEPTS LD A+V R +
Sbjct: 141 AHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
G T++ +H I++ + + L RGGE+I G
Sbjct: 196 ---ERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 9e-13
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARIS-GYCEQNDIHSPGL 788
L+G +GAGK+T+ +L G + G I + G P + AR++ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 789 TVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 847
TV E+LL F + + + E+E + ++E L S + + L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMSTR-EIEA---VIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 848 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 46/260 (17%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ G +L+DLS I P ++G SGK+TLL L G G+
Sbjct: 474 FENVSFRYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP---QQGR 529
Query: 66 ITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
I +G + R YV Q + ++RE + + + I E A
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGSIRENIALGNP----EATDEEIIEAA- 583
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
++AG E I L DT VG E +SGGQ
Sbjct: 584 --QLAGA--HEF------------------------IENLPMGYDTPVG-EGGANLSGGQ 614
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
++RL L+ ++L +DE ++ LD T I++ L + L G TVI ++
Sbjct: 615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL---QILQGRTVI-IIAHRLST 670
Query: 243 YELFDDVILLSEGQIVYQGP 262
D +I+L +G+IV QG
Sbjct: 671 IRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 45/242 (18%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 80
+ +S +R + LLGP +GKTT + L L SG+ T GH +E R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVR 72
Query: 81 TS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
V Q E+T E L + GV RRE+I DE LD
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERI-----DELLDFV- 119
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 199
GL AD LV K SGG ++RL LV VL
Sbjct: 120 ---------------------GLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 200 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 259
F+DE + GLD T + +Y++ G T++ EA +L D V ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 260 QG 261
+G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQ 780
G + L+G +GAGKTT + ++ G II G++ G P RI GY +
Sbjct: 24 EKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLDIAARNRI-GYLPE 77
Query: 781 NDIHSPGLTVLESLLFSAWLR--LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
P + V++ L++ A L+ E R ++E +E +EL+ + +
Sbjct: 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYA-----NKRVE 127
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS ++++ ++ +P ++ +DEP SGLD ++ +R + G+T++ + HQ
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 899 PSIDIFESF-DELLFMKRGGELIY 921
+++ E D +L + +G ++Y
Sbjct: 188 --MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARIS-GYCEQ 780
G + A++G SG+GK+TL++++ + G + G K+ F R GY Q
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
Query: 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG---- 836
N TV E+L ++ L+ ++ +E E + +GL
Sbjct: 84 NFALIENETVEENL----------DLGLKYKKLSKKEKREKKKEALEK---VGLNLKLKQ 130
Query: 837 -INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
I LS +++R+ +A ++ P ++ DEPT LD + V+ + + + G+TI+
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIV 190
Query: 896 IHQPSIDIFESFDELLFM 913
H P + + D ++ +
Sbjct: 191 THDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 730 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 786
++G +G+GK+ L++ +AG +G I+ I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 846
+TV +++ + R + E+E +V+E+ E+ + L P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIE------RKVLEIAEMLGIDHLLNRKPET--LSGGEQQ 136
Query: 847 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 906
R+ IA LV NP I+ +DEP S LD R + ++ I V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 907 FDELLFMKRGGELIYAG 923
D++ M G+LI G
Sbjct: 197 ADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 28/212 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
L+ N + +PG ALVG SG+GK+T+ ++AG + G +I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 773 RISG---YCEQNDIHSPGLTVLESLLFSAWLR-LP-SEIELETQRAFVEEVMELVELTSL 827
++ +Q DI TV ++L + W +P +++ + A + +V +TS
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV-----ITSR 601
Query: 828 SGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
G + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ N
Sbjct: 602 PGGYDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID---DN 657
Query: 885 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G T + H+ S I + DE++ ++RG
Sbjct: 658 LRRRGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 41/220 (18%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY-------PKRQETFARIS 775
G + A++G SG+GK+TL+ ++ G R +G+I I G + E R+
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSEEELYEIRKRM- 87
Query: 776 GYCEQNDIHSPGLTVLESLLFS--AWLRLPSEIELETQRAFVEE-VMELVELTSLSGALI 832
G Q LTV E++ F +LP + + E V+ +EL +
Sbjct: 88 GVLFQQGALFSSLTVFENVAFPLREHTKLP--------ESLIRELVLMKLEL-------V 132
Query: 833 GLPGING------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
GL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 887 NT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925
+ G T++ H + D + + G++I G
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 2e-12
Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 64/273 (23%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L G K IL +S + + LLG +GKTTLL + G SG
Sbjct: 3 VENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG---LLPPRSGS 56
Query: 66 ITYNGHGFKEFVPPRTS----AYVSQQDWQV-AEMTVRETLDFAGQCQGVGSKYDMITEL 120
I ++G P + YV + ++ E+TV E L
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYV-PEGRRIFPELTVEENLLLGAY-------------- 101
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG--LDTCADTLVGDEMLKGI 178
ARR + + ++F L A TL
Sbjct: 102 ARRRAKRKARLERVYELF-------------------PRLKERRKQLAGTL--------- 133
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVISL 235
SGG+++ L L+ ++L +DE S GL ++ I+ L+ G T++ +
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-----GVTILLV 188
Query: 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
Q A A E+ D +L G++V +G +L
Sbjct: 189 EQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 74/276 (26%), Positives = 114/276 (41%), Gaps = 56/276 (20%)
Query: 9 LRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVS 63
L + R +R IL DLS I P R+T LLG +GK+TLL ALAG L +V+
Sbjct: 7 LHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63
Query: 64 GKITYNGHGFKEFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
G +T NG PR + A + Q + RE + +Y
Sbjct: 64 GDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG--------RYPH---- 111
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
ARR AG D +I ++ AL G A LVG ++ +SG
Sbjct: 112 ARR---AGALTHRDGEIAWQALALAG-------------------ATALVGRDVTT-LSG 148
Query: 181 GQKKRLTTGELL---------VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231
G+ R+ +L P R L +DE + LD + ++++ ++ R +
Sbjct: 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LG 207
Query: 232 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
V++++ A D + +L++G IV G VL
Sbjct: 208 VLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
D ++L N+ +PG +VG SG+GK+TL +L T G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIA 524
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
A + G+ + E++LFS +R I L A E V+ +L
Sbjct: 525 DPAWLR--------RQMGVVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHD 574
Query: 830 ALIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
+ LP G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 881 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+R I GRT++ H+ + + D ++ +++G
Sbjct: 635 NMREICR-GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYC-E 779
PG + L+G +GAGKTT ++ G ++E G+I +G P QE RI GY E
Sbjct: 26 PPGEIFGLLGPNGAGKTTTFRMILG-----LLEPTEGEITWNGGPLSQEIKNRI-GYLPE 79
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
+ ++ P +TV + L + A L+ + E++ + ++ +E +E+ I
Sbjct: 80 ERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLERLEIVGKKTKKI-----KE 130
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
LS ++++ ++ P ++ +DEP SGLD ++ + + G TI+ + H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 900 SIDIFESFDELLFMKRGGELIYAGPL 925
+ E D LL +K+ G+ + G +
Sbjct: 191 E-HVEELCDRLLMLKK-GQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 724 RPGVLTALVGVSGAGKTTL---MDVLAGRKTGGIIEGDIYISGYP--KRQETFARI---- 774
+PG + A++G SG+GKTTL +++L + G I GDI I +Q+ R
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
G+ QN P TVLE+++ P ++ E + EL+ L+G
Sbjct: 87 VGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELLAKVGLAGKETSY 141
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
P LS Q++R+ IA L P ++ DEPTS LD V+ T+R + RT+V
Sbjct: 142 P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199
Query: 895 TIHQPSIDIFESFDELLFMKRG 916
H+ S + D +FM +G
Sbjct: 200 VTHEMSF-ARDVADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG----YPKRQETFARIS-GY 777
G + AL+G +GAGK+TL GI++ G++ I G Y K+ R + G
Sbjct: 28 GEMVALLGPNGAGKSTLF-----LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82
Query: 778 CEQN---DIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
QN + +P TV E + F L L E E+E + V E ++ + G
Sbjct: 83 VFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVE------KRVKEALKAVGMEGFENK 133
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
P + LS Q+KR+ IA L P I+ +DEPTSGLD A+ +M+ + ++ G TI+
Sbjct: 134 PP--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191
Query: 894 CTIHQPSIDIFESFDELLFMKRGGELIYAG 923
+ H +D+ + + +++ G++I G
Sbjct: 192 ISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 233
L+G+S Q+KRLT G L +LF+DE ++GLDS Y I+++LK A G ++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 234 SLLQPAPEAYELFDDVILLSE-GQIVYQG 261
++ QP+ +E FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 49/206 (23%)
Query: 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 66
L RG R + LS + +L GP SGKTTLL +AG L +G I
Sbjct: 6 EDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTI 59
Query: 67 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 126
+G + Y+ ++ +TV E L+F
Sbjct: 60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFW---------------------- 97
Query: 127 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 186
A E+LDI ++ +GL A G +S GQK+R+
Sbjct: 98 AAFLGGEELDI----------------AAALEAVGLAPLAHLPFGY-----LSAGQKRRV 136
Query: 187 TTGELLVGPARVLFMDEISNGLDSST 212
LLV + +DE + LD++
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGY-P-KRQETF-ARISGYCE 779
G + +G +GAGKTT + +L+G ++ G++ ++G P KR++ F RI
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
Q L V++S L ++ + ++E+ EL++L L+ P +
Sbjct: 102 QKTQLWWDLPVIDSFYL---LAAIYDLPPARFKKRLDELSELLDL----EELLDTP-VRQ 153
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 898
LS QR R IA L+ P I+F+DEPT GLD A + ++ G T++ T H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213
Query: 899 PSIDIFESFDELLFMKRGGELIYAG 923
DI E+ + + G L+Y G
Sbjct: 214 MK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 3e-12
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 62/203 (30%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L V+ + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVS------ 65
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
SP + +RA + V +L
Sbjct: 66 ---------FASPR---------------------DARRAGIAMVYQL------------ 83
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
S +R+ + IA L N ++ +DEPT+ L + + +R + G ++
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 894 CTIHQPSIDIFESFDELLFMKRG 916
H+ ++FE D + ++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-12
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 64/272 (23%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVS 63
LR L +Y G++ L D+S I +T L+GP GK+TLL L L
Sbjct: 3 LRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 64 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
G++ +G + V R V Q+ ++ + + +
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKP-NPFPGSIYDNVAYG-------------- 104
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 177
++ GIK E+LD VE ++ L D D L +
Sbjct: 105 -----LRLHGIKLKEELD--------------ERVEEALRKAALWDEVKDRLHALGL--- 142
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI- 233
SGGQ++RL L VL +DE ++ LD +T +I I LK T VI
Sbjct: 143 -SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIV 196
Query: 234 --SLLQPAPEAYELFDDVILLSEGQIVYQGPR 263
++ Q A + D L G++V GP
Sbjct: 197 THNMQQ----AARVADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 701 VELKQ-----EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG 753
+EL+ + L +V+ G + ++G SGAGK+TL+ ++ R T G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 754 --IIEGDIY--ISGYPKRQETFARISGYCEQNDIHSPGL----TVLESLLFSAWLRLPSE 805
++G +S RQ + G Q+ L TV E++ F P E
Sbjct: 62 SVFVDGQDLTALSEAELRQ--LRQKIGMIFQH----FNLLSSRTVFENVAF------PLE 109
Query: 806 IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865
+ + + V EL+EL LS P LS Q++R+ IA L NP I+ DE
Sbjct: 110 LAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDE 167
Query: 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAG 923
TS LD ++ +++I G TIV H+ +++ + D + + + G L+ G
Sbjct: 168 ATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEG 224
Query: 924 PL 925
+
Sbjct: 225 TV 226
|
Length = 339 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 73/247 (29%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
L D++ + L ++GP SGK++LL AL G L SG ++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG---------- 66
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 137
+ AYVSQ+ W + T+RE + F G +D R EK+ IK + DL+I
Sbjct: 67 SIAYVSQEPW-IQNGTIRENILF-------GKPFDE----ERYEKV--IKACALEPDLEI 112
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 195
G T +G+ KGI SGGQK+R++ +
Sbjct: 113 ----LPDGDL--------------------TEIGE---KGINLSGGQKQRISLARAVYSD 145
Query: 196 ARVLFMDEISNGLDSSTTYQIIKY------LKHSTRALDGTTVISLLQPAPEAYELFDDV 249
A + +D+ + +D+ I + L + TR L T + LL A D +
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL-VTHQLQLLPHA-------DQI 197
Query: 250 ILLSEGQ 256
++L G+
Sbjct: 198 VVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYP--KRQETFA 772
V+ + + G + L+G +GAGKTT ++ G + G I I+ P KR A
Sbjct: 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR----A 73
Query: 773 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R+ GY Q LTV E++L +R S+ E E + +EE++E +T L +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITHLRKS- 129
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
LS +R+R+ IA L NP + +DEP +G+D A + + ++ + + G
Sbjct: 130 ---KAS-SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 892 IVCTIH 897
++ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 45/265 (16%)
Query: 8 QLRIYRGN--RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
LR+ R + I+D + P LT LLGP SGK+TLL LAG L +G
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGT 57
Query: 66 ITYNG---HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
+ G HG R A V Q +TVR+ + + +
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPH 103
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
R AG P + VV+ + L AD + +SGG+
Sbjct: 104 RSLWAGDSPHDAA----------------VVDRALARTELSHLAD-----RDMSTLSGGE 142
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242
++R+ L ++L +DE +N LD + + + A G TV++ L A
Sbjct: 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV--RELAATGVTVVAALHDLNLA 200
Query: 243 YELFDDVILLSEGQIVYQGPRVSVL 267
D V++L G++V GP VL
Sbjct: 201 ASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 6e-12
Identities = 74/292 (25%), Positives = 117/292 (40%), Gaps = 63/292 (21%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M E L+ +R G+ +L D++ I +LLGP GK+TLL +AG L
Sbjct: 1 MAELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-----L 52
Query: 61 QV--SGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 116
+ SG+I +G +PP R A V Q MTV E + F
Sbjct: 53 EEPTSGEILIDGR-DVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG------------ 99
Query: 117 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176
L K+ G+ E + + K+LGL+ +
Sbjct: 100 ---L----KLRGVPKAEIDKRVKE---------------VAKLLGLEHLLNRKP-----L 132
Query: 177 GISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235
+SGGQ++R+ LV +V +DE +SN LD+ + +K L GTT I +
Sbjct: 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSN-LDAKLRVLMRSEIKKLHERL-GTTTIYV 190
Query: 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
EA L D ++++++G+I G + + + P VA F+
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE--------RPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETF 771
L +++ + PG L L+G +GAGKTTLMDV+ G R G + +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 772 ARISGYCEQNDIHS--PGLTVLESLLF------SAWLRLPSEIELETQRAFVEEVMELVE 823
AR G + + LTV E+L S + L + + +R ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIG 136
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETF 771
L +V+ G L ++G SG GKTTL++++AG T G I I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER--- 76
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
G QN+ P L V++++ F LR IE +R +++ LV L
Sbjct: 77 ----GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
I LS R+R+ IA L P ++ +DEP LDA
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 7e-12
Identities = 64/260 (24%), Positives = 105/260 (40%), Gaps = 47/260 (18%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVP 78
LDD++ + L LLGP SGK+TLL +AG L SG+I NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R +V Q +TVR+ + F G + + + +
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAF-------GLEIRKHPKAKIKAR------------- 110
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
VE +++++ L +GD +SGGQ++R+ L +V
Sbjct: 111 --------------VEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 258
L +DE LD+ ++ +L+ + TTV + EA E+ D ++++S G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 259 YQGPRVSVLDFFAS---MGF 275
G V D A+ M F
Sbjct: 211 QIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKRQETFARISGY 777
+ G +TAL+G +G GK+TL+ A R ++G + GD IS RQ AR
Sbjct: 24 SLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ--LARRLAL 80
Query: 778 CEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
Q+ + G+TV E S S W RL +E A V + ME + L+
Sbjct: 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRINHLADRR 135
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
+ LS QR+R +A+ L + +V +DEPT+ LD +MR +R + G+T
Sbjct: 136 L-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190
Query: 892 IVCTIHQPSIDIFES---FDELLFMKRGG 917
+V +H D+ ++ D L+ + G
Sbjct: 191 VVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQET 770
V+ + G L+G SG GKTTL+ ++AG +T G+I + G KR
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRP-- 73
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
QN P LTV E++ F L+ + E+ + V E ++LV+L +
Sbjct: 74 ----VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI---KERVAEALDLVQLEGYANR 126
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 127 KP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 9e-12
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGD 758
+E + D L ++ G + G +G+GKTTL+ +LAG G
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGR 56
Query: 759 IYISGYPKRQE--TFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQR 812
+ ++G P + + AR Y H+PG L+VLE+L F W S
Sbjct: 57 VLLNGGPLDFQRDSIARGLLYLG----HAPGIKTTLSVLENLRF--WHADHS-------D 103
Query: 813 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
VEE + V L + LS Q++R+ +A L++ + +DEPT+ LD
Sbjct: 104 EQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
Query: 873 RAAAIVMRTVRNIVNTGRTIVCTIHQP 899
A + G +V T HQ
Sbjct: 159 AGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 785
G + ALVGV+G+GK+TL L G + G I I G P RQ + Y Q++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 786 PGLTVL-ESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
VL E ++ WLR + + R V + V++ IG
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LS Q+KR+ +A + ++ +DEP +G+D + A ++ +R + + G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 58/261 (22%)
Query: 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 67
L + G +L+D+S ++P ++GP +GK+TLL A+ G L SG I
Sbjct: 4 DLTVSYGGH---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIR 57
Query: 68 YNGHGFKEFVPPRTS----AYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
G P YV Q+ D ++VR+ + +
Sbjct: 58 VFG------KPLEKERKRIGYVPQRRSIDRD-FPISVRDVV-----------------LM 93
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
+ + V+ ++ +GL AD +G+ +SG
Sbjct: 94 GLYGHKGLFRRL-------------SKADKAKVDEALERVGLSELADRQIGE-----LSG 135
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQ++R+ LV +L +DE G+D T I + L+ R +G T++ +
Sbjct: 136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLG 193
Query: 241 EAYELFDDVILLSEGQIVYQG 261
E FD V+LL +V G
Sbjct: 194 LVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 723 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 779
PG ALVG SG GK+T++ +L + G+I + G R G
Sbjct: 26 IPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP---- 835
Q E +LF + I A EEV E + ++ ++ LP
Sbjct: 84 Q-----------EPVLFDGTIA--ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD 130
Query: 836 ---GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V + + GR
Sbjct: 131 TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189
Query: 891 TIVCTIHQPS-------IDIFE--------SFDELLFMKRGGELIYA 922
T + H+ S I + + + DEL M + G +YA
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL--MAQKG--VYA 232
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 32/200 (16%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQET 770
L +V+ R G L G SGAGKTTL+ +L G T G + I+G RQ
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 771 FARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 825
R G Q+ P TV E++ L + + E E QR V + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGKKEREIQRR-VGAALRQVGLEHKAD 132
Query: 826 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
LSG EQ +R+ IA +V +P ++ DEPT LD + ++
Sbjct: 133 AFPEQLSGG------------EQ-QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 882 VRNIVNTGRTIVCTIHQPSI 901
++ + G T++ H S+
Sbjct: 180 LKRLNKRGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-11
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 740 TTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS----GYCEQNDIHSPGLTVLESLL 795
+TL+ ++ G G I + G + ++ G Q+ P LTV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 796 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 855
F + A EE +E V L + + LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDF----LDREPVGTLSGGQKQRVAIARALL 106
Query: 856 ANPSIVFMDEPTS 868
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 52/248 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
L DL+ I+ +LT L+G +GK+TLL L G L G+I NG ++ P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 80 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
+ ++VSQ + A T+RE + A + + I + + P D
Sbjct: 392 AWRKQISWVSQNPYLFAG-TIRENILLAR----PDASDEEIIAALDQAGLLEFVPKPD-- 444
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
GLDT ++G+ G+SGGQ +RL L+ PA
Sbjct: 445 ------------------------GLDT----VIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQPAPEAYELFDDVILLS 253
+L +DE + LD+ T I++ L TV+ + L+ A +A D +++L
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQAL---QELAKQKTVLVITHRLEDAADA----DRIVVLD 528
Query: 254 EGQIVYQG 261
G++V QG
Sbjct: 529 NGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 56/240 (23%)
Query: 31 PSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVSGKITYNGHGF-----KEFVPP--RT 81
+T + G +GK+TLL +AG + G I NG K +PP R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRK 76
Query: 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 141
V QQ + VRE L F +K
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG----------------------------------LKR 102
Query: 142 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 201
+ S V+ ++ +LGLD + +SGG+K+R+ L +L +
Sbjct: 103 KRNREDRIS--VDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLL 155
Query: 202 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
DE + LD + Q++ LK + L+ VI + EA L D ++++ +G++ Y G
Sbjct: 156 DEPFSALDRALRLQLLPELKQIKKNLNI-PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 46/257 (17%)
Query: 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 67
L + G + IL+DLS + ++T L+GP GK+TLL A L SG +
Sbjct: 7 NLTVGYGTK---RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVF 60
Query: 68 YNGHGFKEFVPPRTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 124
+ + ++ Q +TVRE + +
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY--------------------- 99
Query: 125 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 184
G P ++ + + + V M+ ++ AD + D +SGGQ++
Sbjct: 100 ---GRSP------WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQ 145
Query: 185 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244
R +L V+ +DE + LD + ++++ ++ G TV+++L +A
Sbjct: 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASR 203
Query: 245 LFDDVILLSEGQIVYQG 261
D +++L+ G ++ QG
Sbjct: 204 YCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 41/213 (19%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
E + ++L V + G + A++G +G+GK+TL + G + EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG------ 67
Query: 770 TFARISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIE-----------LETQRAFV 815
DI L+ E +F A+ P EI + +R
Sbjct: 68 -----------EDILE--LSPDERARAGIFLAFQY-PVEIPGVTNSDFLRAAMNARRGAR 113
Query: 816 EEVMELVELTSLSGALIGLP------GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTS 868
+ E ++ L+GL +N G S ++KR I L+ P + +DEP S
Sbjct: 114 GILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901
GLD A IV + + GR ++ H +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARI 774
+V+ G + L+G +GAGKTT ++ G R G II D IS P I
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
GY Q L+V ++L+ A L++ ++ E + E+ME + L ++
Sbjct: 81 -GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-- 135
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
LS +R+R+ IA L ANP + +DEP +G+D + + R + ++ ++G ++
Sbjct: 136 ---QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 895 TIHQPSIDIFESFD--ELLFMKRGGELIYAG 923
T H ++ E+ E ++ G LI G
Sbjct: 193 TDH----NVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG------YPKRQETFARISGYCEQNDIH 784
L+G SG GKTT + ++AG + G IYI G PK R QN
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYAL 83
Query: 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 844
P +TV +++ F LR + E++ + V EV EL+++ L L P LS Q
Sbjct: 84 YPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGGQ 135
Query: 845 RKRLTIAVELVANPSIVFMDEPTSGLDAR 873
R+R+ + +V P + MDEP S LDA+
Sbjct: 136 RQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 51/251 (20%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 69
I + ILDDLS + + L G +GKTTL LAG + + SG I N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLN 60
Query: 70 GHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 128
G K ++ YV Q D+Q+ +VRE EL K
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD 101
Query: 129 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 188
++ E ++K L L + +SGGQK+RL
Sbjct: 102 AGNEQ-------------------AETVLKDLDLYALKERHPLS-----LSGGQKQRLAI 137
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE-AYELFD 247
L+ +L DE ++GLD ++ + ++ A G VI ++ E ++ D
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL--AAQGKAVI-VITHDYEFLAKVCD 194
Query: 248 DVILLSEGQIV 258
V+LL+ G IV
Sbjct: 195 RVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 55/267 (20%)
Query: 1 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 58
M+ A + R + G++ ++D LS ++ LLGP +GKTT L L LG
Sbjct: 3 MSVAPIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGL 56
Query: 59 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
+G I+ G E VP R + A V GV ++D
Sbjct: 57 THPDAGSISLCG----EPVPSRA---------RHARQRV-----------GVVPQFD--- 89
Query: 119 ELARREKIAGIKPD----EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 174
+ PD E+L +F + F L +V +++ L+ AD VG+
Sbjct: 90 ---------NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234
+SGG K+RLT LV VL +DE + GLD + + + L+ G T++
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILL 193
Query: 235 LLQPAPEAYELFDDVILLSEGQIVYQG 261
EA L D + ++ EG+ + +G
Sbjct: 194 TTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
Length = 306 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 3e-11
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 20/199 (10%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG-----RKTGGIIEGDIYISGYPKRQETFARISGYCE 779
G L AL+G SG GKTTL+ +AG TG I D ++ P + A +
Sbjct: 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF---- 85
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
QN P L V +++ F + + ++ E V + ++L L A LP
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIA------ERVADALKLVGLGDAAAHLP--AQ 137
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT--GRTIVCTIH 897
LS ++R+ IA + P ++ +DEP S LDA A + + + TI+C H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 898 QPSIDIFESFDELLFMKRG 916
D D+ MK G
Sbjct: 198 DQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISGYPKRQ 768
LL NV G + L+G SG GK+TL+ + G TG + + + P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
R G Q+ + P L+V ++LLF+ LP+ ++ +R +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLD--- 125
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
GA P LS QR R+ + L+A P + +DEP S LD
Sbjct: 126 GAFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 770
L NV+ RPG A++G G+GK+TL+ +L G + T EG + + G RQ
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSVLLDGVDIRQIDPAD 536
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
R GY Q+ LF LR I L A EE++ EL ++
Sbjct: 537 LRRNIGYVPQD-----------PRLFYGTLR--DNIALGAPYADDEEILRAAELAGVTEF 583
Query: 831 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
+ P LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
++ + G+T+V H+ S + + D ++ M G ++ GP
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 50/254 (19%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
+R + + +D +S ++P +T LLGP +GKTT L LAG L +G T +G
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDG- 66
Query: 72 GFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 127
F P + +VS +T RE L++ +
Sbjct: 67 -FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA-------------------GLY 106
Query: 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 187
G+K DE +E + LG++ D VG G S G ++++
Sbjct: 107 GLKGDELTA---------------RLEELADRLGMEELLDRRVG-----GFSTGMRQKVA 146
Query: 188 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247
LV VL +DE + GLD T + ++++ G ++ E L D
Sbjct: 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCD 204
Query: 248 DVILLSEGQIVYQG 261
V++L G++VY+G
Sbjct: 205 RVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-11
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIY-----ISGYPKRQET--FARI 774
PG + +VG SG+GK+TL L G + G I G++ + G +R+ +
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 775 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GAL 831
Q+ + S P +T+ + + + L ++ + +EL+E L
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-----SRAEARKRAVELLEQVGLPDPER 147
Query: 832 IG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTG 889
P + LS R+R+ IA+ L P ++ DEPT+ LD A ++ ++++ G
Sbjct: 148 RDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRG 916
++ H + + E D ++ M +G
Sbjct: 206 MAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGY-P-KRQETFARISGYCEQ 780
G + +G +GAGK+T + +L TG ++ G + ++G P +R+E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKML----TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMG 104
Query: 781 N------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
D L L+SL L+L EI F E + L E+ L G L
Sbjct: 105 QKLQLWWD-----LPALDSLEV---LKLIYEIP---DDEFAERLDFLTEILDLEGFL-KW 152
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 893
P + LS QR R +A L+ P ++F+DEPT GLD A A + ++ T++
Sbjct: 153 P-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 894 CTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925
T H DI D +L + + G+L++ G L
Sbjct: 212 LTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-11
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 33/199 (16%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 770
LL +V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAE 73
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFS-------AWLRLPSEIELETQRAFVEEVMELVE 823
AR Q HS SL F A R P + A V + V+
Sbjct: 74 LARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAI 877
L L+G LS +++R+ +A L P + +DEPTS LD
Sbjct: 124 LAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 878 VMRTVRNIVNTGRTIVCTI 896
V+R R + + V +
Sbjct: 179 VLRLARQLAHERGLAVIVV 197
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 700 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG 757
E + L+D +N+ G L A+VG G+GK++L+ L G K G
Sbjct: 12 SGEQETSFTLKD-----INLE--VPKGELVAIVGPVGSGKSSLLSALLGELEKL----SG 60
Query: 758 DIYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAF 814
+ + G I+ Y Q P + T+ E++LF + +R
Sbjct: 61 SVSVPG---------SIA-YVSQ----EPWIQNGTIRENILFGK--------PFDEER-- 96
Query: 815 VEEVME----LVELTSLSGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867
E+V++ +L L IG GIN LS Q++R+++A + ++ I +D+P
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPL 155
Query: 868 SGLDAR-AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
S +DA I + ++ +T + HQ + + D+++ + G
Sbjct: 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 37/215 (17%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET---F 771
N+ G L+G SG+GKTT M + +IE G+I+I G R++
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVEL 73
Query: 772 ARISGYCEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
R GY Q P +TV E LL W + E R +E++ LV L
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLD 124
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
A P LS Q++R+ +A L A+P ++ MDEP LD + + +
Sbjct: 125 PAEFAD-RYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 886 VNT-GRTIVCTIHQPSIDIFESF---DELLFMKRG 916
G+TIV H DI E+F D + MK G
Sbjct: 182 QQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-11
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR---- 767
+L + F +T LVG +G GK+TL L+G R G + Y KR
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 768 -QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
++ A + EQ ++ + + FS LR E E R V+E + LV+
Sbjct: 75 LRQQVATVFQDPEQQIFYT---DIDSDIAFS--LRNLGVPEAEITRR-VDEALTLVDAQH 128
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
I LS Q+KR+ IA LV + +DEPT+GLD ++ +R IV
Sbjct: 129 FRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 887 NTGRTIVCTIHQPSID-IFESFDELLFMKRGGELIYAGP 924
G ++ + H ID I+E D + +++G L + P
Sbjct: 184 AQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 35/222 (15%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE---TF 771
+V G L+G SG+GKTT + + +IE G+I I G
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 772 ARISGYCEQNDIHSPGLTVLESLLF----SAWLRLPSEIELETQRAFVEEVMELVELTSL 827
R GY Q P LTV E++ W + E + +E+++LV L
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK-------ERIKKRADELLDLVGLDP- 125
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-V 886
S P + LS Q++R+ +A L A+P I+ MDEP LD + ++ +
Sbjct: 126 SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 887 NTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELI-YAGP 924
G+TIV H DI E+ D + M GE++ Y P
Sbjct: 184 ELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF 771
+L +V+ PG +TALVG SG+GK+T++ +L + G G + + G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG----GQVLLDGKP------ 77
Query: 772 ARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
IS Y E +HS V E +LF+ L+ I Q E V E +
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSF 132
Query: 831 LIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
+ L G G LS Q++R+ IA L+ NP ++ +DE TS LDA + V +
Sbjct: 133 ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA 192
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + RT++ H+ + E D++L + G
Sbjct: 193 LYD-WPERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--- 772
L +++ G ALVG SG+GK+TL++++ + + G I I G+ R T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R G Q + LF+ + I A EEV E + ++
Sbjct: 76 RQIGLVSQ-----------DVFLFNDTVA--ENIAYGRPGATREEVEEAARAANAHEFIM 122
Query: 833 GLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
++ RT H+ S E+ D ++ ++ G
Sbjct: 183 RLM-KNRTTFVIAHRLS--TIENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 8e-11
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 43/190 (22%)
Query: 705 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764
QEG ++ +L NV+ + G + A+VG SG+GK+TL+ +L G T GD+ +G
Sbjct: 16 QEGSVQT--DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQ 71
Query: 765 P-------KRQETFARISGYCEQNDIHSPGLTVLES----LLFSAWLRLPSEIELETQRA 813
P + E + G+ Q P T LE+ LL + P+EI RA
Sbjct: 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK--KKPAEIN---SRA 126
Query: 814 FVEEVMELVEL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865
E++ V L + LSG +R+R+ IA LV NP +V DE
Sbjct: 127 L--EMLAAVGLEHRANHRPSELSGG-------------ERQRVAIARALVNNPRLVLADE 171
Query: 866 PTSGLDARAA 875
PT LDAR A
Sbjct: 172 PTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 8e-11
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
+V+ + + G + AL+G +GAGK+TLM +L G + G+I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 774 ISGYCEQND--------IHS-----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
I D +H P LTV E+++ I+ RA ++E+ E
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
L A + LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 127 RYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181
Query: 881 TVRNIVNTGRTIV 893
+R + G+TI+
Sbjct: 182 ILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
LDD+S +RP R LLGP +GK+T L +L RL + Q G+I+ GH + P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKST-LFSLLTRL-YVAQ-EGQISVAGHDLRR-APRAA 72
Query: 82 SAY---VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
A V QQ +++VR+ L + G L+R E A I E L
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARI--AELLA-- 118
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
LGL AD V + ++GG ++R+ L+ +
Sbjct: 119 --------------------RLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPAL 153
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF------DDVILL 252
L +DE + GLD ++ I ++ RAL +S+L A L D +++L
Sbjct: 154 LLLDEPTVGLDPASRAAITAHV----RALARDQGLSVLW----ATHLVDEIEADDRLVVL 205
Query: 253 SEGQIVYQGPR 263
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 9e-11
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 48/263 (18%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
L+ + + R + IL DLS + P ++GP +GKTTLL L G H SG
Sbjct: 34 LKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG---EHPPSSGD 87
Query: 66 ITYNGHGF-KEFVPP---RTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
+T G F K + VS + ++V E TVR+ + + + I
Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE-TVRDVV--------LSGFFASIG 138
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 178
EDL ++++++LG AD G +
Sbjct: 139 IYQEDLT------AEDLAA---------------AQWLLELLGAKHLADRPFGS-----L 172
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238
S G+++R+ LV +L +DE + GLD Q++ L+ + ++ +
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
Query: 239 APEAYELFDDVILLSEGQIVYQG 261
A E F +LL EG++V QG
Sbjct: 233 AEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 75/275 (27%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
LR L G R T+L + +R + ++GP SGK+TLL + G L SG+
Sbjct: 3 LRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGE 56
Query: 66 ITYNGH-----GFKEFVP-PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 119
+ +G E R + Q +TV E + F + S+ + I E
Sbjct: 57 VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIRE 115
Query: 120 LARREKIA--GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177
+ EK+ G++ EDL
Sbjct: 116 IVL-EKLEAVGLRGAEDL--------------------------------------YPAE 136
Query: 178 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 230
+SGG KKR V AR +L DE + GLD + I ++ + L T
Sbjct: 137 LSGGMKKR-------VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 231 TVI---SLLQPAPEAYELFDDVILLSEGQIVYQGP 262
+++ L A+ + D + +L +G+IV +G
Sbjct: 190 SIMVTHDL----DTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQET 770
+L + + G + ++G SG+GK+TL+ + + G I I G ++
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70
Query: 771 FARIS---GYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTS 826
+ G Q P LTVLE++ + ++ S+ E E E +EL+E
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE------ERALELLEKVG 124
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
L+ P LS Q++R+ IA L NP ++ DEPTS LD V+ ++++
Sbjct: 125 LADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 887 NTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 916
G T+V H+ F E D ++FM G
Sbjct: 183 EEGMTMVVVTHEMG---FAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (154), Expect = 1e-10
Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE--- 769
L ++ + G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 770 ---TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM-ELVELT 825
+ + E TVL+ + F P + ++A E++ E +E+
Sbjct: 82 VRKKVGVVFQFPESQLFEE---TVLKDVAFG-----PQNFGIPKEKA--EKIAAEKLEMV 131
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
L+ LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ +I
Sbjct: 132 GLADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVE-GVPK 944
+G+T+V H +D + + +++ G +I G S + + + +A E GVPK
Sbjct: 191 HQSGQTVVLVTHL--MDDVADYADYVYLLEKGHIISCGT-PSDVFQEVDFLKAHELGVPK 247
|
Length = 288 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 770
+ L N G A++G SG+GK+TL+ +LAG + G I + I+ + Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QAL 410
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
IS ++ LFS LR + L A EE+ ++ L
Sbjct: 411 RETISVLTQRVH------------LFSGTLR--DNLRLANPDASDEELWAALQQVGLEKL 456
Query: 831 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
L P G+N LS +R+RL +A L+ + + +DEPT GLD V+
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G+T++ H+ E D ++ + G
Sbjct: 517 LFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP----KRQ 768
L NV+ G +VG SG+GK+TL +LAG + + G I + G P KR
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 769 ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
+ F R Q+ S P TV L S+ + + E+++ V L
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQVGLPP 132
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 --SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 48/243 (19%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 79
LD +S + + LLGP +GKTTL+ LA SG I +G +
Sbjct: 15 ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKL 70
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R Y+ Q+ TVRE LD+ +G+ SK E+ R
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK-----EVKAR--------------- 110
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
V+ +++++ L A +G +SGG ++R+ + LVG +
Sbjct: 111 --------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSI 151
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 258
L +DE + GLD + I++ + + VI + L + V +L++G++V
Sbjct: 152 LIVDEPTAGLDPE---ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
Query: 259 YQG 261
++G
Sbjct: 209 FEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 768
++Q L V+ G + AL+G +GAGKTTL+ + G ++G II I+G P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP--- 71
Query: 769 ETFARIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-EL 824
R Y + P LTV E+LL A+ R E Q +EEV EL L
Sbjct: 72 -PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRL 126
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 127 KERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 885 IV-NTGRTIV 893
+ G TI+
Sbjct: 182 LRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 34/165 (20%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKT----GGIIEGDIYISGYPKRQETFARISGYCE 779
PG L ++G +GAGKTT+MDV+ G KT G ++ G ++G P+ Q AR +G
Sbjct: 26 DPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQ--IAR-AGIGR 81
Query: 780 --QNDIHSPGLTVLESL------------LFSAWLRLPSEIELETQRAFVEEVMELVELT 825
Q LTV E+L L ++ +EEV+E + L
Sbjct: 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS-------AEEKDRIEEVLETIGLA 134
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870
+ L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 135 DEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKRQETFARI 774
PG + +VG SG+GKTTL++ L+ R G + D+Y +R+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTE 90
Query: 775 SGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 824
G+ Q+ S G + E L+ R +I RA + +E VE+
Sbjct: 91 WGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDI-----RATAGDWLERVEIDAAR 144
Query: 825 -----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
T+ SG + ++RL IA LV +P +VFMDEPT GLD A ++
Sbjct: 145 IDDLPTTFSGGM-------------QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 880 RTVRNIVNT 888
+R +V
Sbjct: 192 DLLRGLVRE 200
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGR---KTGGI-------IEGDIYISGYPKRQETFAR 773
PG + +VG SG+GK+TL+ LAGR G E ++Y +R+
Sbjct: 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT 86
Query: 774 ISGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
G+ QN S G + E L+ + R I RA ++ +E VE+
Sbjct: 87 EWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNI-----RATAQDWLEEVEIDP- 139
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 886
+ LP S ++RL IA LV P +VFMDEPT GLD A ++ +R +V
Sbjct: 140 -TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ G ++ H + + LL M++G
Sbjct: 197 DLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 174 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
+ +SGGQ++R+ L+ +L +DE ++GLD ++ ++++ L+ A +G TVI
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 234 SLLQPAPEAYELFDDVILLSEGQ 256
+ A D VI+L +G+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 62/265 (23%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
+ + LDD+S I+ L+G SGK+TL A+ LG SG I ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAI---LGLLKPTSGSIIFDGK 67
Query: 72 -----GFKEFVPPRTS-AYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELAR 122
+ R V QD + MT+ E + + G SK + + A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVF-QDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-KEAV 125
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182
+ G+ E+ + + E+ SGGQ
Sbjct: 126 LLLLVGVGLPEE---VLNRYP----------------------------HEL----SGGQ 150
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLL 236
++R+ L ++L DE ++ LD S QI+ LK L G T++ +
Sbjct: 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGV- 208
Query: 237 QPAPEAYELFDDVILLSEGQIVYQG 261
++ D V ++ G+IV +G
Sbjct: 209 -----VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-10
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 57/256 (22%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 79
LD++S IRP ++G SGK+TLL L G G + +G ++ P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R YV QD ++ T+R+ + G D E+ R ++AG + F
Sbjct: 538 RRNIGYV-PQDPRLFYGTLRDNIAL-----GAPYADD--EEILRAAELAG------VTEF 583
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
++ G D +G E + +SGGQ++ + L+ +
Sbjct: 584 VRRHPDG--------------------LDMQIG-ERGRSLSGGQRQAVALARALLRDPPI 622
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILL 252
L +DE ++ +D+ + + LK R L G T++ SLL +L D +I++
Sbjct: 623 LLLDEPTSAMDNRSEERFKDRLK---RWLAGKTLVLVTHRTSLL-------DLVDRIIVM 672
Query: 253 SEGQIVYQGPRVSVLD 268
G+IV GP+ VL+
Sbjct: 673 DNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 20/155 (12%)
Query: 725 PGV-LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG---YPKRQETF----ARISG 776
PG +TA+ G SG+GKTTL+ ++AG EG+I ++G + R+ F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 777 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
Y Q P L+V +L + PSE +R E V+EL+ + L L LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHL---LGRLPG 130
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 730 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG---YPKRQETFARISG----YCE 779
+VG SG+GK+ L + G + I+ G+I G ++ +I G
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 780 QNDIHS--PGLTV----LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
Q+ + S P +T+ E L + S+ E + +RA E++ELV + L
Sbjct: 95 QDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAK-ERAI--ELLELVGIPDPERRLKS 149
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTI 892
P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ ++ + G +
Sbjct: 150 YP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL 207
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ H + + E D + M G ++ GP
Sbjct: 208 ILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
ED+ ++L V + G + A++G +G+GK+TL +AG + + G I G Q+
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 770 TF-------ARISGYCE-QNDIHSPGLTVLESLLFSAWLRLPSEIELETQ-RAFVEEVME 820
AR + Q PG++ LE L + R + E F++ +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA 125
Query: 821 LVELTSLSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
+ L + + +N G S ++KR I + P + +DE SGLD A IV
Sbjct: 126 KLALLGMDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 880 RTVRNIVNTGRTIVCTIHQPSI 901
+ + R+ + H +
Sbjct: 185 EGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 22/224 (9%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 775
N++ + L+G +GAGK+TL+ ++ G R T G+I G+P ++ +I
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHKIG 73
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
E ++ LT E+L L L R ++EV+ +V+LT+ G
Sbjct: 74 SLIESPPLYE-NLTARENLKVHTTLL-----GLPDSR--IDEVLNIVDLTN-----TGKK 120
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+ G T++ +
Sbjct: 121 KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180
Query: 896 IHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 939
H S ++ + D + + G L Y G + +KS L K F V
Sbjct: 181 SHILS-EVQQLADHIGIIS-EGVLGYQGKI-NKSENLEKLFVEV 221
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-10
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 42/215 (19%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+LD +S + P +LGP SGK+TLL LAG L G++T +G
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 81 TSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
VS QD + + TVRE L A + + ++ L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLA---RPDATDEELWAALER----VGLADW------ 453
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+ L DT++G E +SGG+++RL L+ A +
Sbjct: 454 --------------------LRALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
L +DE + LD+ T ++++ L AL G TV+
Sbjct: 493 LLLDEPTEHLDAETADELLEDL---LAALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-10
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ---ET 770
L ++ + + G A++G SG+GK+TL ++ G G + + G +Q ET
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLI----VGIWPPTSGSVRLDGADLKQWDRET 389
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
F + GY Q D+ LF + I + A E+++E +L +
Sbjct: 390 FGKHIGYLPQ-DVE----------LFPG--TVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 831 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
++ LP G LS QR+R+ +A L +P +V +DEP S LD +
Sbjct: 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
++ + G T+V H+PS + D++L ++ G
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 762
+ +L +V+ G A+VG SG+GK+T++ DV +G I I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILID 61
Query: 763 GYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 819
G R ++ R G Q+ TVL F+ + I A EEV+
Sbjct: 62 GQDIREVTLDSLRRAIGVVPQD-------TVL----FNDTIG--YNIRYGRPDATDEEVI 108
Query: 820 ELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870
E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS L
Sbjct: 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
Query: 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
D + +R+ V+ GRT + H+ S I + D+++ +K G
Sbjct: 169 DTHTEREIQAALRD-VSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 49/255 (19%)
Query: 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 78
LT ++D+S +RP + L+GP +GKTTL + G SG + + G +P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDI-TGLP 72
Query: 79 P--RTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
P +++ Q ++ +TV E + + S + E+ A +
Sbjct: 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--- 129
Query: 134 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 193
+++ +GL AD G+ +S GQ++RL L
Sbjct: 130 -------------------ARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALA 165
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV------ISLLQPAPEAYELFD 247
++L +DE + GL+ T ++ + ++ R G T+ + L+ L D
Sbjct: 166 TQPKLLLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 248 DVILLSEGQIVYQGP 262
+++L+ G+++ +G
Sbjct: 219 RIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 6e-10
Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 46/258 (17%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ LR+ G T+LDDLS I L L+G GKTTLL A+AG + ++G+
Sbjct: 8 IDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGR 63
Query: 66 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 123
I PP R A + Q + V + + F + Q + ++A R
Sbjct: 64 IAIADRDLTH-APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAER 117
Query: 124 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 183
V +K++GL A L +SGG +
Sbjct: 118 -----------------------------VADALKLVGLGDAAAHLPAQ-----LSGGMQ 143
Query: 184 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243
+R+ + VL +DE + LD++ + + + L T++ + +A
Sbjct: 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203
Query: 244 ELFDDVILLSEGQIVYQG 261
L D ++ +G++ G
Sbjct: 204 TLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-10
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGII-EG-DIYISG 763
Q + NV + G + AL+G SG GKTT + D+ G R TG I+ +G DIY
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 764 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
R G Q P ++V ++++ A L+L + + +ME+ E
Sbjct: 78 VDP--VAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAE 126
Query: 824 LTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
SL GA + P GLS Q++RL IA L P I+ MDEPTS LD +
Sbjct: 127 -RSLRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 876 AIVMRTVRNIVNTGRTIVCT--IHQPS 900
A + + ++ I+ T +HQ +
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-10
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 765
D +L +V+ PG A+VG SG+GK+TL+ +L G +T G ++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDLAGL 520
Query: 766 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
+RQ G QN G ++ E++ A L L +E E
Sbjct: 521 DVQAVRRQ------LGVVLQNGRLMSG-SIFENIAGGAPLTL-------------DEAWE 560
Query: 821 LVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+ L+ + +P G LS QR+RL IA LV P I+ DE TS LD
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 872 ARAAAIVM 879
R AIV
Sbjct: 621 NRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RI 774
V+ + G + +G +GAGK+T M ++ G G ++ + G Q R
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEVQRN 76
Query: 775 SGYCEQNDIHSP---GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
GY + H+P + V E L F A + L+ + VEE++ELV L
Sbjct: 77 IGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPEQHKK 130
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
IG LS R+R+ +A L+ +P ++ +DEPT+GLD + ++NI +T
Sbjct: 131 IG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKT 184
Query: 892 IVCTIH 897
I+ + H
Sbjct: 185 IILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-10
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
LL NV+ PG LVG +GAGK+TL+ +LAG G++ R+
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LRV 68
Query: 775 SGYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVELTSLSG--- 829
GY Q P TVL+ ++ F L +E+E + L EL +L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 830 ----------ALIGLPGINGLSTE-------QRKRLTIAVELVANPSIVFMDEPTSGLDA 872
AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 873 RA 874
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 53/258 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 78
+LD +S +RP + +LGP +GK+TLL AL+G L SG++T NG + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 79 --PRTSAYVSQQDWQVA-EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
R A V Q+ +A TV+E + ++ R +G +P+ED
Sbjct: 72 ELARHRA-VLPQNSSLAFPFTVQE-----------------VVQMGRIPHRSGREPEEDE 113
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL--- 192
I + L A + +SGG+++R+ +L
Sbjct: 114 RI---------------AAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQL 153
Query: 193 ---VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
V R LF+DE ++ LD + + ++ + R +G V+++L A + D +
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRI 211
Query: 250 ILLSEGQIVYQGPRVSVL 267
+LL +G+++ G VL
Sbjct: 212 VLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 60/224 (26%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L L+ + LLG +GK+TLLL L G L SG + +G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDG---------- 53
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
E LD Y L RR+++ + D D +F
Sbjct: 54 ------------------EPLD-----------YSRKGLLERRQRVGLVFQDPDDQLFAA 84
Query: 141 ------SFA---LGGQKTSL--VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
+F LG + + V + +G + L SGG+KKR+
Sbjct: 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--HCL---SGGEKKRVAIA 139
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
+ VL +DE + GLD + Q++ L RA +G TV+
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAIL-RRLRA-EGMTVV 181
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 778
G + A++G SGAGK+TL++++AG +T G I+ + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 779 EQNDIHSPGLTVLESLLF--SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
E N LTV +++ S L+L +E QR VE V L+G L LPG
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQV---GLAGFLKRLPG 128
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRTVRNIV--NTGRTI 892
LS QR+R+ +A LV I+ +DEP S LD RA M + + + T+
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTL 183
Query: 893 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925
+ H P D D ++F+ G + G
Sbjct: 184 LMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 46/235 (19%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEG--DIYISGYP 765
DRL N+T F +TA +G +GAGKTT + +L G +G ++ G DI +
Sbjct: 947 DRL----NIT--FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 766 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEV----M 819
RQ G C Q++I LTV E +LF A L+ S E +LE + A +E+
Sbjct: 1001 VRQSL-----GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEME-AMLEDTGLHHK 1054
Query: 820 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
E LSG + QRK L++A+ V + +V +DEPTSG+D +
Sbjct: 1055 RNEEAQDLSGGM------------QRK-LSVAIAFVGDAKVVVLDEPTSGVDPYS----R 1097
Query: 880 RTVRNIV---NTGRTIV-CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 930
R++ +++ +GRTI+ T H D+ D + + +G PL K+C
Sbjct: 1098 RSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAIISQGRLYCSGTPLFLKNC 1150
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 52/244 (21%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 77
T LDDL+ I +LLGP GKTT L +AG L+ SG+I G + +
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-----LEEPTSGRIYIGGRDVTD-L 67
Query: 78 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
PP R A V Q MTV + + F K+ + DE
Sbjct: 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFG-------------------LKLRKVPKDE-- 106
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
I + V + ++L ++ D K +SGGQ++R+ G +V
Sbjct: 107 -IDER------------VREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVRE 148
Query: 196 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
+V MDE +SN LD+ Q+ LK + L GTT I + EA + D + ++++
Sbjct: 149 PKVFLMDEPLSN-LDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMND 206
Query: 255 GQIV 258
GQI
Sbjct: 207 GQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 57/227 (25%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 770
L ++ A + G ++G SG+GK+TL +L G T G + D G RQ E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL------ETQRAFVEEV--MELV 822
R GY LP ++EL E F EE +++
Sbjct: 408 LGRHIGY------------------------LPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 823 ELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869
E L+G IG G LS QR+R+ +A L +P +V +DEP S
Sbjct: 444 EAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
LD+ A + + G T+V H+PS S D++L ++ G
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-09
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 770
L + G ALVG SGAGKT+L++ L G +G + I+G R+ E+
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLP---YQGSLKINGIELRELDPES 420
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ + + QN L LR + L A E++ + +E +S
Sbjct: 421 WRKHLSWVGQN-----------PQLPHGTLR--DNVLLGNPDASDEQLQQALENAWVSEF 467
Query: 831 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ T++ T HQ ++ +D++ M+ G
Sbjct: 528 LNAASRRQTTLMVT-HQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 48/261 (18%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 69
+ Y G L D++ I + ++GP +GK+TLL +L G + SG+I +N
Sbjct: 11 KTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFN 64
Query: 70 GHGF-----KEFVPPRTS-AYVSQQDWQVAEMTVRET--LDFAGQCQGVGSKYDMITELA 121
G KE R + QQ V ++V E L G S + + +
Sbjct: 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS--- 121
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181
+ +K + E + I K++ Q+ A TL SGG
Sbjct: 122 KEDKAQALDALERVGILDKAY----QR-----------------ASTL---------SGG 151
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241
Q++R+ LV +++ DE LD + +++ LK + T +++L Q
Sbjct: 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDL 210
Query: 242 AYELFDDVILLSEGQIVYQGP 262
A + D +I L G+IV+ GP
Sbjct: 211 AKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 71/263 (26%), Positives = 103/263 (39%), Gaps = 72/263 (27%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
LDD+S I L LLGP SGKTTLL +AG L SG I + G
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LER--PDSGTILFGG---------ED 65
Query: 82 SAYVSQQDWQVA----------EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 131
+ V Q+ V MTV + + F R K +P
Sbjct: 66 ATDVPVQERNVGFVFQHYALFRHMTVFDNVAF-----------------GLRVKPRSERP 108
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 191
E +I K V ++K++ LD AD +SGGQ++R+
Sbjct: 109 PEA-EIRAK------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARA 150
Query: 192 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL-DGTTVISLL--QPAPEAYELFDD 248
L +VL +DE LD+ ++ K L+ R L D V ++ EA E+ D
Sbjct: 151 LAVEPKVLLLDEPFGALDA----KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR 206
Query: 249 VILLSEGQI--------VYQGPR 263
V+++++G+I VY P
Sbjct: 207 VVVMNKGRIEQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 68/257 (26%), Positives = 105/257 (40%), Gaps = 62/257 (24%)
Query: 37 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAE 94
+LGP SGK+ LL +AG + SGKI NG PP R +YV Q
Sbjct: 30 ILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNL-PPEKRDISYVPQNYALFPH 85
Query: 95 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154
MTV + + + G+ + E+ R+ V
Sbjct: 86 MTVYKNIAY-----GLKKRKVDKKEIERK-----------------------------VL 111
Query: 155 YIMKILGLDTCAD----TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 210
I ++LG+D + TL SGG+++R+ LV ++L +DE + LD
Sbjct: 112 EIAEMLGIDHLLNRKPETL---------SGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
Query: 211 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFF 270
T ++ + LK R G TV+ + EA+ L D V ++ G+++ G V
Sbjct: 163 RTKEKLREELK-KIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV---- 217
Query: 271 ASMGFSCPKRKNVADFL 287
F PK + VA+FL
Sbjct: 218 ----FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 770
+L V+ G +T ++G +G GKTTL+ L G K+G I I+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 771 FARIS---GYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVE-L 824
R Y Q P LTV E+LL +A R +I +E+ EL L
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVL 121
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
+ G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176
Query: 885 IVNTGRTIVCTIHQPSIDI-FESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 939
+ G + + Q +D E D M+R G ++ +G + ++ + AV
Sbjct: 177 LRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 67/237 (28%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 698 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 757
D+ VE VL+ V + R G L LVG +GAGKTTL+ + G T G
Sbjct: 8 DLSVEFGDTTVLDG-------VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AG 58
Query: 758 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-----RLPSEIEL---- 808
+ ++G + S + P T L S F R P
Sbjct: 59 TVLVAGDDVEALSARAAS----RRVASVPQDTSL-SFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 809 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868
ET RA VE ME + + + LS +R+R+ +A L ++ +DEPT+
Sbjct: 114 ETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAGP 924
LD + VR +V+ G+T V IH +D+ + DEL+ + G + AGP
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR-VRAAGP 222
|
Length = 402 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 42/220 (19%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-QETFARI 774
L +++ R G + AL+G +GAGK+TL+ +L+G G I I G R T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 775 -SG----YCEQNDIH-SPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVE---- 823
+G Y E +H P +TV E+L +L +LP + + +R E E +E
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 824 -------LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
L LS IG QR+ + IA L N ++ DEPTS L AR
Sbjct: 131 DIDPDTPLKYLS---IG----------QRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177
Query: 877 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ R +R + GR I+ H+ +IF D + K G
Sbjct: 178 QLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 64/261 (24%)
Query: 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKE 75
L LDD+S +RP + L+GP +GKTTL ++G L SG + ++G G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDITGLPP 69
Query: 76 FVPPRTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 132
+ + Q ++ E+TV E + A Q + + ++ ARRE+
Sbjct: 70 HE--IARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE----- 119
Query: 133 EDLDIFMKSFALGGQKTSLVVEYIMKIL---GLDTCADTLVGDEMLKGISGGQKKRLTTG 189
E ++L GL AD G+ +S GQ++RL
Sbjct: 120 -------------------ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIA 155
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVI------SLLQPAPE 241
L ++L +DE + GL+ T ++ + + R L G TV+ ++
Sbjct: 156 RALATDPKLLLLDEPAAGLNPEETEELAELI----RELRERGITVLLVEHDMDVV----- 206
Query: 242 AYELFDDVILLSEGQIVYQGP 262
L D V +L +G+++ +G
Sbjct: 207 -MSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 74/276 (26%), Positives = 112/276 (40%), Gaps = 61/276 (22%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEF 76
T +DD+S I+ LLGP GKTTLL +AG Q SG+I +G +
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG----FEQPSSGEILLDGEDITD- 71
Query: 77 VPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 131
VPP R V Q A MTV E + F L K+
Sbjct: 72 VPPEKRPIGMVFQ---SYALFPHMTVEENVAF---------------GL----KVRKKLK 109
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 191
++ V E ++++GL+ AD +SGGQ++R+
Sbjct: 110 KAEIKAR-------------VEEA-LELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 192 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 251
LV +VL +DE + LD+ Q+ K LK R L G T + + EA + D + +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAV 209
Query: 252 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+++G+I G + + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-09
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 37 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 96
L+G +GK+TLL LAG L SG++T Y+SQ+ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFA-LGGQKTSLVVEY 155
V + + +G G +++ EL + DE L L G E
Sbjct: 83 VLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 156 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 215
+ LG D V +SGG ++R+ L+ +L +DE +N LD +
Sbjct: 138 ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEW 191
Query: 216 IIKYLKHSTRAL 227
+ YLK +
Sbjct: 192 LEDYLKRYPGTV 203
|
Length = 530 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 47/228 (20%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
++L V + G + AL+G +G+GK+TL + G + EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 774 ISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
DI L E +F A+ P EI F+ V E
Sbjct: 64 -------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 938
+++ H + + D + + G ++ +G EL E
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 49/222 (22%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L N++ + +PG +VG +G+GK++L +LA + + G I I G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGV----------- 66
Query: 776 GYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMELVE 823
DI GL L + +LFS +R P + EE+ + +E
Sbjct: 67 ------DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD------EELWQALE 114
Query: 824 LTSLSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
L + LPG LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 875 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
A++ +T+R T++ H+ +D D +L + +G
Sbjct: 175 DALIQKTIRE-AFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 730 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS---GYCEQN-- 781
A++G +GAGK+TL R GI++ G + I G P +E + G QN
Sbjct: 34 AVIGPNGAGKSTLF-----RHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88
Query: 782 -DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 840
I SP TV + + F P + L+ + V + + L +P + L
Sbjct: 89 DQIFSP--TVEQDIAFG-----PINLGLDEE-TVAHRVSSALHMLGLEELRDRVP--HHL 138
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQP 899
S ++KR+ IA + P ++ +DEPT+GLD + ++ + ++ T G T++ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 900 SIDIFESFDELLFMKRGGELIYAG 923
+D+ + +++ G ++ G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 66/269 (24%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L +Y G +S IL +S + +T +LG GKTTLL L +G SG
Sbjct: 3 VSNLNVYYG-QS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL---MGLLPVKSGS 56
Query: 66 ITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 121
I +G + P + AYV Q +TV E L S+
Sbjct: 57 IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSR-------- 108
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML--KG-- 177
KI PDE ++F +L EML +G
Sbjct: 109 ---KI----PDEIYELF-------------------PVL-----------KEMLGRRGGD 131
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVIS 234
+SGGQ+++L LV ++L +DE + G+ S I I+ L RA G ++
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL----RAEGGMAILL 187
Query: 235 LLQPAPEAYELFDDVILLSEGQIVYQGPR 263
+ Q A EL D ++ G++V G
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAG 216
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-09
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 48/259 (18%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---V 77
IL D+S I+ + T ++G SGK+TL L +G SG+I NG K+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL---VGFFQARSGEILLNGFSLKDIDRHT 545
Query: 78 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
+ Y+ Q+ + + ++ E L G + V D I IA IK D
Sbjct: 546 LRQFINYLPQEPYIFSG-SILENL-LLGAKENVSQ--DEIWAACE---IAEIKDD----- 593
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
+++ LG Q T L E ISGGQK+R+ L+ ++
Sbjct: 594 -IENMPLGYQ-TELSEEG--------------------SSISGGQKQRIALARALLTDSK 631
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
VL +DE ++ LD+ T +I+ L + L T+I + A + D +I+L G+I
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVA-KQSDKIIVLDHGKI 686
Query: 258 VYQGPRVSVLD---FFASM 273
+ QG +LD F+AS+
Sbjct: 687 IEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKR 767
L +++ + + G L+G SG GKTTL+ ++AG R+T G I +G I+ P +
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTS 826
+ + G Q+ P LTV +++ + L+ + EV E V EL
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAELL- 119
Query: 827 LSGALIGLPGING-----LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
L+GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 120 ---DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
++L ++ + G + ++G SG+GK+TL+ L G G I D G K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
R G Q P LTVLE++ + ++ S+ E ++A E++E V L +
Sbjct: 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKA--LELLEKVGLADKAD 131
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
A P LS Q++R+ IA L +P ++ DEPTS LD V+ ++++ G
Sbjct: 132 AY---PA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 890 RTIVCTIHQPSIDIFESF-----DELLFMKRG 916
T++ H ++ F D ++FM +G
Sbjct: 187 MTMIIVTH----EM--GFAREVADRVIFMDQG 212
|
Length = 240 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQN 781
G L L+G +GAGKTTL+ R G+I +G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 782 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
+ ++ + WLR P + A V + + V LT L+ +
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHI--GWLRRPCVADF----AAVRDALRRVGLTELADRPV 111
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
G LS QR+R+ +A L PS++ +DEP +GLD ++ + G I
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 893 VCTIH 897
+ T H
Sbjct: 167 LMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 8e-09
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
L D+S I P L+GP +GK+TLL L G + SG + +G +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGK 71
Query: 80 ------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK---IAGIK 130
R + QQ + ++V E + + L RR + G+
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 131 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 190
P E+ K AL ++ +GL A D++ SGGQ++R+
Sbjct: 118 PKEE-----KQRAL----------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIAR 157
Query: 191 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250
L+ +++ DE LD +++ Q++ LK R T ++SL Q A E D ++
Sbjct: 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216
Query: 251 LLSEGQIVYQGP 262
L +G+IV+ GP
Sbjct: 217 GLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 732 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 788
VG SG GK+TL+ ++AG + I GD++I KR R G Q+ P L
Sbjct: 35 VGPSGCGKSTLLRMIAGLED--ITSGDLFIGE--KRMNDVPPAERGVGMVFQSYALYPHL 90
Query: 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 848
+V E++ F L + E+ QR V +V E+++L L L P LS QR+R+
Sbjct: 91 SVAENMSFGLKLAGAKKEEIN-QR--VNQVAEVLQLAHL---LDRKP--KALSGGQRQRV 142
Query: 849 TIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGI-IEGDIYISGYPKRQETFARISGY 777
F G +TA+VG SG+GK+TL++++AG +T G + I G + P + +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP----VSML 75
Query: 778 CEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
++N++ LTV ++ L S L+L +E R +E + V L+G LP
Sbjct: 76 FQENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARV---GLAGLEKRLP 126
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVC 894
G LS +R+R+ +A LV + ++ +DEP + LD A ++ V ++ T T++
Sbjct: 127 G--ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184
Query: 895 TIHQPSIDIFESFDELLFMKRG 916
HQP D ++F+ G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 9e-09
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 56/262 (21%)
Query: 6 LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-- 62
L+ L Y G K+ L +S I ++GP SGK+TLL L G L
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-----LDRPT 57
Query: 63 SGKITYNGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 115
SG++ +G + +A +V Q + ++T E ++
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL--------- 108
Query: 116 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 175
+AG+ E + E +++ +GL + E+
Sbjct: 109 ----------LAGVPKKERRE---------------RAEELLERVGLGDRLNHYPS-EL- 141
Query: 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235
SGGQ++R+ L +++ DE + LDS T ++++ L+ GTT++ +
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIV-V 196
Query: 236 LQPAPEAYELFDDVILLSEGQI 257
+ PE E D +I L +G+I
Sbjct: 197 VTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGII-EGDIYISGYPKRQETF 771
L V + G +L+G SG GK+TL+++++G +GG+I EG P R F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
QN P LTV E++ + LP + E +RA VEE + LV LT +
Sbjct: 61 --------QNYSLLPWLTVRENIALAVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKR 111
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR- 890
G LS ++R+ IA L P ++ +DEP LDA + + I R
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 891 TIVCTIHQPSIDIFESFDELLFM 913
T++ H D+ DE L +
Sbjct: 167 TVLMVTH----DV----DEALLL 181
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 731 LVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 787
L+G SG GKTTL+ +LAG + G I+ ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 847
+TV E++ F +R ++ + V E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQR 108
Query: 848 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFES 906
+ +A LV P I+ +DEP S LD + + ++ I G T V H + S
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 907 FDELLFMKRG-------GELIYAGP 924
D + M++G E IY P
Sbjct: 169 -DRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 772
L ++ R G + LVG +GAGK+TL+ +AG G G I +G P A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R Y Q + V + L L P + E + + EV E + L
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK----- 119
Query: 833 GLP-GINGLS-TE-QRKRLTIAVELVANPSI------VFMDEPTSGLDARAAAIVMRTVR 883
L +N LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 120 -LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 884 NIVNTGRTIVCTIH 897
+ G +V + H
Sbjct: 178 ELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFK 74
L +++ I P ++GP +GK+TLL + RL SG I G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRL--VEPSSGSILLEGTDITKLRGK 72
Query: 75 EFVPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK--- 130
+ R + Q + +TV E + + L + +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV--------------LHGRLGYKPTWRSLLGRF 118
Query: 131 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 190
+ED K AL ++ +GL A +SGGQ++R+
Sbjct: 119 SEED-----KERAL----------SALERVGLADKAYQRA-----DQLSGGQQQRVAIAR 158
Query: 191 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250
L ++ DE LD T+ Q++ YLK + DG TVI L A + D ++
Sbjct: 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIV 217
Query: 251 LLSEGQIVYQGP 262
L G+IV+ G
Sbjct: 218 GLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 80
+D ++ +R + LGP +GKTT + L L SG G+ +E R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVR 65
Query: 81 TSAYVSQQDWQVAE-MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
S + Q V E +T RE L+ G+ G+ E+ + +
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD-------EAEERAEEL---------L 109
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 199
+ F LG D + SGG ++RL L+ VL
Sbjct: 110 ELFELGEA-----------------------ADRPVGTYSGGMRRRLDIAASLIHQPDVL 146
Query: 200 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 257
F+DE + GLD T I Y+ RAL +G T++ EA +L D + ++ G+I
Sbjct: 147 FLDEPTTGLDPRTRRAIWDYI----RALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202
Query: 258 VYQG 261
+ +G
Sbjct: 203 IAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
T LDD+S + + LLGP +GKTT + + G + L SG++ ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPL-DIAAR 69
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
Y+ ++ +M V + L + Q +G+ + ARR +D ++
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR----------IDEWL 113
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 199
+ L ++ ++ +S G ++++ ++ +L
Sbjct: 114 ERLELSEYA-----------------------NKRVEELSKGNQQKVQFIAAVIHDPELL 150
Query: 200 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 257
+DE +GLD + LK R L G TVI EL D V+LL++G+
Sbjct: 151 ILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
Query: 258 VYQG 261
V G
Sbjct: 207 VLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 48/233 (20%)
Query: 35 TLLLGPPSSGKTTLLLALAGRL---GHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQD 89
T + G SGKTTL+ +AG + ++G+ T F+PP R YV Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-TLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 90 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 149
++VR L + G K +E
Sbjct: 85 RLFPHLSVRGNLRY-------GMKRARPSERRISF------------------------- 112
Query: 150 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 209
E ++++LG+ L G +SGG+K+R+ G L+ R+L MDE LD
Sbjct: 113 ----ERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
Query: 210 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 262
Y+I+ YL+ ++ + E L D V++L +G++ GP
Sbjct: 164 DPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 32/220 (14%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG--YPKR 767
+ L +V PG + AL+G +GAGK+TLM VL+ GI E G I I+ Y K
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS-----GIHEPTKGTITINNINYNKL 72
Query: 768 QETFARISG----YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVE 816
A G Y E + I LTVLE+L R ++ I+ R
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAA 127
Query: 817 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
++ V L + LS ++ L IA L+ + ++ MDEPTS L +
Sbjct: 128 MMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 877 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + + G IV H+ + +I D MK G
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 15/220 (6%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQ 768
+Q L NV+ G + ++G SGAGK+TL+ ++L +G +I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 769 ETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
T AR G Q+ +L S + LP E++ + +V EL+ L L
Sbjct: 77 LTKARRQIGMIFQH------FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL 130
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
P + LS Q++R+ IA L +NP ++ DE TS LD ++ ++ I
Sbjct: 131 GDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 888 T-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926
G TI+ H+ +D+ + + + + GELI G +
Sbjct: 189 RLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYP--KRQETFA 772
+V+ G + L+G +GAGKTT ++ G +G I+ D I+ P KR A
Sbjct: 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR----A 77
Query: 773 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R+ GY Q LTV ++++ +R + E ++ ++ ++E +T L +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE-RKEELDALLEEFHITHLRDS- 135
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
+ LS +R+R+ IA L ANP + +DEP +G+D A + R ++++ + G
Sbjct: 136 ---KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 892 IVCTIH 897
++ T H
Sbjct: 192 VLITDH 197
|
Length = 243 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 23/236 (9%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGG 753
+E++ + + NVT +TA++G SG GKTTL+ D + G +
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR--- 60
Query: 754 IIEGDIYISGY----PKRQETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 808
+EG IY G P+ T R G Q P +++ +++ F R+
Sbjct: 61 -VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSK 116
Query: 809 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868
VEE ++ L + + PG LS Q++RL IA L P ++ +DEPTS
Sbjct: 117 HKLDRIVEESLKKAALWDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
LD A + + + + + TIV H I + D + FM R GELI GP
Sbjct: 176 ALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIA-DYIAFMYR-GELIEYGP 228
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 702 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII--EG 757
ELKQ G L ++L N++ + R G A+ G SG GK+TL+ ++A T G + EG
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 758 DIYISGYPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 815
+ + P+ RQ+ YC Q TV ++L+F +R RA
Sbjct: 65 EDVSTLKPEAYRQQV-----SYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAA 113
Query: 816 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
+++ L I I LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LDLLARFAL----PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 876 ----AIVMRTVR 883
++ R VR
Sbjct: 170 RNIEEMIHRYVR 181
|
Length = 223 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 45/234 (19%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 79
L +S + P L+GP +GK+TLL L G + G I NG +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
A+V Q + A T+ E + A + S I E R AG LD F
Sbjct: 395 RDQIAWVPQHPFLFAG-TIAENIRLA---RPDASD-AEIREALER---AG------LDEF 440
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+ + G DT +G+ G+SGGQ +RL + A +
Sbjct: 441 VAALPQG--------------------LDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
L +DE + LD+ T ++++ L+ G TV+ L+ L D +++L
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALR---ALAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 55/246 (22%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
+LDD+S ++ + LGP +GKTT + + G + SG+IT++G +++ +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEA 70
Query: 80 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
R A + + +T RE L L R+K
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLA------------RLLGIRKKR----------- 106
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
++ ++ ++GL A V KG S G K+RL L+G
Sbjct: 107 ---------------IDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPD 146
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEG 255
+L +DE +NGLD ++ + + S R T +IS LL E ++ D + ++++G
Sbjct: 147 LLILDEPTNGLDPDGIKELRELI-LSLRDQGITVLISSHLLS---EIQKVADRIGIINKG 202
Query: 256 QIVYQG 261
+++ +G
Sbjct: 203 KLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 60/254 (23%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
+DD++ I +L+GP SGKTT L + RL SG+I +G + + P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTT-TLKMINRLIEP--TSGEILIDGEDISD-LDP 70
Query: 80 ----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
R YV QQ +TV E + + G +E+I
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-----------KERIKKR------ 113
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
+ ++ ++GLD + D +SGGQ++R VG
Sbjct: 114 -----------------ADELLDLVGLDP---SEYADRYPHELSGGQQQR-------VGV 146
Query: 196 AR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248
AR +L MDE LD T Q+ + +K + L G T++ + EA +L D
Sbjct: 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADR 205
Query: 249 VILLSEGQIVYQGP 262
+ ++ G+IV
Sbjct: 206 IAVMDAGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 55/249 (22%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 79
+L D+S I L+GP SGK+TL+ L R + SG+I +GH +++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRF--YDVDSGRILIDGHDVRDYTLAS 73
Query: 80 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
R VSQ + F D + E IA +P +
Sbjct: 74 LRRQIGLVSQ-----------DVFLF----------NDTV-----AENIAYGRPGATREE 107
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
++ + + E+IM+ L DT++G+ +K +SGGQ++R+ L+
Sbjct: 108 VEEA-----ARAANAHEFIME---LPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPP 158
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAPEAYELFDDVILL 252
+L +DE ++ LD+ + + L+ + + TT + S ++ A D +++L
Sbjct: 159 ILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-------DRIVVL 209
Query: 253 SEGQIVYQG 261
+G+IV +G
Sbjct: 210 EDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-08
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
+ LL +++ G A+VG +GAGK+TL+ +LAG + G + G +
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTV-KVGETVKIG 388
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
F ++++ P TVLE L P E E RA++ +G
Sbjct: 389 YFD-----QHRDEL-DPDKTVLEEL----SEGFPDGDEQEV-RAYLGRFG-------FTG 430
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
P + LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 431 EDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 686 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV 745
+S+ F N++Y ++++G L N++ G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 746 LAG--RKTGGIIEGDIYISGYPKRQETFA--------RISGYCEQNDIHSPGLTVLESLL 795
+ + G I I+GY ET ++S + + TVL+ +
Sbjct: 53 FNALLKPSSGTIT----IAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Query: 796 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 855
F P A E+ ++ ++ LS LI LS Q +R+ IA +
Sbjct: 109 FG-----PKNFGFSEDEA-KEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMA 161
Query: 856 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915
P I+ +DEP +GLD +M+ ++ G T++ H D+ E D++L ++
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 916 GGELIYAGP 924
G + +A P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 71/195 (36%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG--- 73
Query: 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR------------AF 814
+I+ P + V+E LR + + Q+ A+
Sbjct: 74 --------------KNIYDPKVDVVE-------LR--RRVGMVFQKPNPFPMSIYDNVAY 110
Query: 815 V--------EEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVA 856
+E+ E+VE +SL A L GLS Q++RL IA L
Sbjct: 111 GLRLHGIKDKELDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAV 166
Query: 857 NPSIVFMDEPTSGLD 871
P ++ MDEPTS LD
Sbjct: 167 KPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 19/165 (11%)
Query: 708 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767
LED +N+T G L ++G SG GKTTL++++AG G I + G P
Sbjct: 16 ALED-----INLT--LESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVE 66
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
R G QN+ P V +++ F L+L + +E + ++++ V L
Sbjct: 67 GPGAER--GVVFQNEGLLPWRNVQDNVAFG--LQL-AGVEKMQRLEIAHQMLKKVGL--- 118
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
GA I LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 119 EGA--EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L G R T LD++S ++ + L+GP SGK+TLL A+AG L SG+
Sbjct: 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGE 55
Query: 66 ITYNGHGFKEFVPP---RTSAYVSQ 87
I +G + R YV Q
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 53/255 (20%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFVP 78
ILD++S I+P + ++G SGK+TL +L V +G++ +GH P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
A++ +Q V ++E + F R+ IA P ++
Sbjct: 72 ----AWLRRQVGVV----LQENVLFNRSI---------------RDNIALADPGMSMERV 108
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+++ L G ++I + L DT+VG E G+SGGQ++R+ L+ R+
Sbjct: 109 IEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRI 159
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 253
L DE ++ LD + + I++ + G TVI + A+ L D +I++
Sbjct: 160 LIFDEATSALDYESEHAIMRNMH---DICAGRTVIII------AHRLSTVKNADRIIVME 210
Query: 254 EGQIVYQGPRVSVLD 268
+G+IV QG +L
Sbjct: 211 KGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------PKR 767
L +V+ + G + ++G SGAGK+TL+ + G R T G + + G K
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSVLVDGTDLTLLSGKE 76
Query: 768 QETFARISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
R G Q N + S TV E++ LP EI + E V+EL+EL
Sbjct: 77 LRKARRRIGMIFQHFNLLSSR--TVFENVA------LPLEIAGVPKAEIEERVLELLELV 128
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
L P LS Q++R+ IA L NP ++ DE TS LD ++ +R+I
Sbjct: 129 GLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDI 186
Query: 886 VN--TGRTIVCTIHQ 898
N G TIV H+
Sbjct: 187 -NRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 3e-08
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETF 771
L + RPG L G +GAGK+TLM +L+G G +G+IY SG P + ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLS 828
Q P L+V E++ + LP RA + ++ ++L + +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQLDADN 134
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
+ Q++ + IA L ++ +DEP+S L + I++ +R++
Sbjct: 135 VTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 889 GRTIVC 894
G + C
Sbjct: 191 G--VAC 194
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 71/282 (25%), Positives = 107/282 (37%), Gaps = 79/282 (28%)
Query: 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 66
R L + G R T+LDD+S +RP + +LGP +GK+TLL AL+G L SG++
Sbjct: 6 RNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEV 59
Query: 67 TYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 123
NG ++ P R A + Q +L F
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQH----------SSLSFP---------------FTVE 94
Query: 124 EKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD----TLVGDEMLKGI 178
E +A G P L + +V + + L A L
Sbjct: 95 EVVAMGRAP----------HGLSRAEDDALVAAALAQVDLAHLAGRDYPQL--------- 135
Query: 179 SGGQKKR------LTTGELLVGPARVLFMDEISNGLDSS---TTYQIIKYLKHSTRALDG 229
SGG+++R L GP R L +DE ++ LD + ++ + L H G
Sbjct: 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE----RG 191
Query: 230 TTVISLL----QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
VI +L A A D ++LL +G++V G VL
Sbjct: 192 LAVIVVLHDLNLAARYA----DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L NV+ R G + +L G +GAGK+TLM VL+G G EG+I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 776 GYCEQND---IHS-----PGLTVLESLLFSAWLRLPSEI--------ELETQRAFVEEVM 819
E+ IH L+VLE++ L +EI + RA ++++
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRA--QKLL 128
Query: 820 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
++L +G G+ Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 129 AQLKLDINPATPVGNLGLG-----QQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 880 RTVRNIVNTGRTIVC 894
+R++ G I C
Sbjct: 184 DIIRDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 34/217 (15%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
+ +L +T PG + ALVG SG+GK+T+ +L + TGG + + G P Q
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ-- 547
Query: 771 FARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
+ + +H L E +LFS +R I EE+M + +
Sbjct: 548 -------YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 830 ALIGLP-GING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
++ P G + LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 881 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 916
++ + RT++ H+ S E D++L +K+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFA 772
NV+ + G + +VG SGAGKTTL ++AG T G + GD ++ +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 773 RISGYC----EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
R Y ++ D++ P TVL++L + L LP EL +A + M +
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPD--ELARMKAVITLKMVGFDEEKAE 418
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
L P + LS +R R+ +A L+ P IV +DEPT +D I V + +
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 889 GR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
R T + H + + D M R G+++ G
Sbjct: 473 AREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 46/252 (18%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARI 774
+V+ R G + ++G+SG+GK+TL+ R +IE G + I G + +
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 775 S-------GYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS 826
Q+ P TVLE++ F ++ +P E RA E +ELV L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE--RA--AEALELVGLEG 152
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTV 882
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 153 WEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207
Query: 883 RNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAGP----LGSKSCELIKY 935
+ +TIV H D+ E+ D + MK G L+ G L + + + ++
Sbjct: 208 AEL---QKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVGTPEEILTNPANDYVRE 259
Query: 936 FEAVEGVPKIRP 947
F GV + +
Sbjct: 260 F--FRGVDRAKV 269
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 37/247 (14%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQE--- 769
L +V G TA +G +G+GK+T+M +L G G + D I+ K ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 770 ---------TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
F + E TVL+ + F S+ E E A E +
Sbjct: 83 IRKKVGLVFQFPESQLFEE---------TVLKDVAFGPQNFGVSQEEAE---ALAREKLA 130
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
LV +S +L LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 131 LV---GISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMT 186
Query: 881 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG-PLGSKSCELIKYFEAV 939
+ + +G TIV H +D ++ + +++ G+L+ +G P + + + E
Sbjct: 187 LFKKLHQSGMTIVLVTHL--MDDVANYADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEK 242
Query: 940 E-GVPKI 945
+ GVPKI
Sbjct: 243 QLGVPKI 249
|
Length = 280 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 730 ALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQNDIHSP 786
L+G +GAGK+TL+ +LA GI G + + G R+S +P
Sbjct: 52 GLIGRNGAGKSTLLRLLA-----GIYPPDSGTVTVRG---------RVSSLLGLGGGFNP 97
Query: 787 GLTVLESLLFSAWL--RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 844
LT E++ + L EI ++E++E EL G I LP + S+
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEI-----DEKIDEIIEFSEL----GDFIDLP-VKTYSSGM 147
Query: 845 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 904
+ RL A+ P I+ +DE + DA R +R ++ G+T++ H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH--DPSSI 205
Query: 905 ESF-DELLFMKRGGELIYAG 923
+ D L +++ G++ + G
Sbjct: 206 KRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 63/259 (24%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 74
+R + IL LS I P + L+G GK+T++ +L R + SG+I +G +
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERF--YDPTSGEILLDGVDIR 68
Query: 75 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE-KIAGIK 130
+ VSQ+ + + T+ E + + K D E K A I
Sbjct: 69 DLNLRWLRSQIGLVSQEP-VLFDGTIAENIRY--------GKPDATDEEVEEAAKKANI- 118
Query: 131 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTT 188
F+ S G DTLVG+ +G +SGGQK+R+
Sbjct: 119 -----HDFIMSLPDGY--------------------DTLVGE---RGSQLSGGQKQRIAI 150
Query: 189 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEA 242
L+ ++L +DE ++ LD+ + + + L RA+ G T I S ++ A
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEALD---RAMKGRTTIVIAHRLSTIRNA--- 204
Query: 243 YELFDDVILLSEGQIVYQG 261
D + +L GQ+V QG
Sbjct: 205 ----DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 47/198 (23%)
Query: 14 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 73
R + T+ DLS + + GP +GKTTLL LAG L +G++ + G
Sbjct: 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLR--PDAGEVYWQGEPI 66
Query: 74 KEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 131
+ + Y+ Q E+T E L F + G G+
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN---------------AATI 111
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 191
E L GL D VG +S GQ++R+ L
Sbjct: 112 WEALAQV----------------------GLAGLEDLPVGQ-----LSAGQQRRVALARL 144
Query: 192 LVGPARVLFMDEISNGLD 209
+ PA + +DE LD
Sbjct: 145 WLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 6e-08
Identities = 69/258 (26%), Positives = 104/258 (40%), Gaps = 56/258 (21%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----K 74
T+L LS ++T L+G SGK+TLL L GR H G+I + K
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR--HQPPSEGEILLDAQPLESWSSK 81
Query: 75 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR-----REKIAGI 129
F R AY+ QQ MTVRE + +G +Y L R REK
Sbjct: 82 AFA--RKVAYLPQQLPAAEGMTVRELV-------AIG-RYPWHGALGRFGAADREK---- 127
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
VE + ++GL A LV +SGG+++R
Sbjct: 128 -----------------------VEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIA 159
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
L+ +R L +DE ++ LD + ++ L H G TVI++L A D +
Sbjct: 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYL 218
Query: 250 ILLSEGQIVYQGPRVSVL 267
+ L G+++ QG ++
Sbjct: 219 VALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 40/250 (16%)
Query: 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA 83
D+S I + LG +GK+T L L G L SGK+ NG P R
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGL---LLPTSGKVRVNG-----KDPFRRRE 93
Query: 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFA 143
+R GQ + +L + L++ +
Sbjct: 94 EY-----------LRSIGLVMGQKLQ------LWWDLPALD---------SLEVLKLIYE 127
Query: 144 LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 203
+ + + ++++ +IL L+ + + K +S GQ+ R L+ P +VLF+DE
Sbjct: 128 IPDDEFAERLDFLTEILDLEG----FLKWPVRK-LSLGQRMRAELAAALLHPPKVLFLDE 182
Query: 204 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPR 263
+ GLD + I ++LK TV+ + L D V+L+ +GQ+V+ G
Sbjct: 183 PTVGLDVNAQANIREFLKEYNEE-RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTL 241
Query: 264 VSVLDFFASM 273
+ + F
Sbjct: 242 AQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 62/244 (25%), Positives = 93/244 (38%), Gaps = 65/244 (26%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
+ L N+ +TAL+G SG GK+TL+ D++ G + IEG + G
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDG--- 67
Query: 767 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI------ELETQ---- 811
DI+ + V+E ++F P I
Sbjct: 68 --------------QDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKD 113
Query: 812 RAFVEEVMELVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVF 862
+ ++E++E SL A L GLS Q++RL IA L P ++
Sbjct: 114 KKELDEIVE----ESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167
Query: 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH--QPSIDIFESFDELLFMKRGGELI 920
+DEPTS LD A + ++ + TIV H Q + I D F GEL+
Sbjct: 168 LDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARI---SDRTAFFYD-GELV 222
Query: 921 YAGP 924
GP
Sbjct: 223 EYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 770
Q+L N+ G + ++G SG+GK+TL+ + L +G +I + ++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 771 FARI-SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
R +G Q P LT LE+++F P + ++ ++ EL+ L+
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
P + LS Q++R+ IA L P ++ DEPTS LD V++ ++++ G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 890 RTIVCTIHQ 898
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-08
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ--N 781
PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-IGLP---GI 837
D+ T+ ++ + + + RA +E + L +GL G
Sbjct: 414 DVVLFNDTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 838 NG--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
NG LS QR+RL IA L+ + I+ +DE TS LD + +V + ++ GRT +
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVI 524
Query: 896 IHQPSIDIFESFDELLFMKRGGELIYAGP 924
H+ S E D ++ M G ++ G
Sbjct: 525 AHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 7e-08
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 771
R +L ++ G A+VG SGAGK+T++ +L + + G I I G
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF--RFYDVNSGSITIDGQ------- 325
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
I +Q+ + G+ +++LF+ + I+ A EEV E + +
Sbjct: 326 -DIRDVTQQSLRRAIGIVPQDTVLFNDTIA--YNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 832 IGLP-------GINGL--STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
LP G GL S +++R+ IA ++ NP I+ +DE TS LD + +
Sbjct: 383 QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
Query: 883 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
R V+ GRT + H+ S I DE++ + G
Sbjct: 443 R-EVSAGRTTLVIAHRLSTII--DADEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 768
NV R + +L+G +GAGKTT+ + L G + TGG I +I G P Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 769 -ETFARISGYCEQNDIHSPGLTVLESLL-----------FSAWLRLP----SEIELETQR 812
TF + + E +TV+E+LL FS L+ P +E E +
Sbjct: 83 VRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 813 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
A E + L+E + L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 135 ATWLERVGLLEHANRQAG--------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-08
Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 54/254 (21%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+++DLS I LLGP +GK+T+ L LG GKIT G E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARML---LGMISPDRGKITVLG----EPVPSR 71
Query: 81 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
V Q D E TVRE +
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRE----------------------------------N 97
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
L +F + F + ++ V+ +++ L++ AD V +SGG K+RLT L+
Sbjct: 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
++L +DE + GLD + I + L+ S A G T++ EA L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLR-SLLAR-GKTILLTTHFMEEAERLCDRLCVLES 210
Query: 255 GQIVYQGPRVSVLD 268
G+ + +G +++D
Sbjct: 211 GRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 9e-08
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
+L NV+ + G +VG +GAGK+TL +LA + EG I I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDGI--------- 70
Query: 774 ISGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVEL 824
DI + L L S LFS +R + E EE+ + +
Sbjct: 71 --------DISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRV 119
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
+ G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 120 SE---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
Query: 885 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
T TI+ H+ I +D++L M G Y P
Sbjct: 171 EF-TNSTILTIAHRLRTII--DYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 55/264 (20%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SG 64
+ + G + +LDD+S I +T ++GP +GK+TLL ++ RL L+ SG
Sbjct: 4 IENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRL---LKKDSG 56
Query: 65 KITYNGH---GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ---CQGVGSKYDMIT 118
+IT +G + + + Q++ + +TVR+ + F G+ QG +K D
Sbjct: 57 EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF-GRFPYSQGRLTKED--- 112
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 178
R I +EY + + L D L +
Sbjct: 113 ----RRIINE-----------------------AIEY-LHLEDLS--------DRYLDEL 136
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238
SGGQ++R +L + +DE N LD + QI+K L+ L T V+ +L
Sbjct: 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHD 195
Query: 239 APEAYELFDDVILLSEGQIVYQGP 262
A D ++ L G++V QG
Sbjct: 196 INFASCYSDHIVALKNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 54/275 (19%), Positives = 92/275 (33%), Gaps = 64/275 (23%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
Y G + L+++S I ++G SGK+TL LAG SG I +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDG- 68
Query: 72 GFKEFVP-PRTSAYVSQ-----QD-------WQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
K P R A+ QD + + E L G + +++
Sbjct: 69 --KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD 126
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 178
++ +P E +
Sbjct: 127 QVGLPPSFLDRRPHE--------------------------------------------L 142
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238
SGGQ++R+ L+ ++L +DE ++ LD S QI+ L + G T + +
Sbjct: 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHD 201
Query: 239 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 273
+ D + ++ GQIV GP +L +
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 46/278 (16%)
Query: 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKE 75
LT+LD L+ + L+GP SGK+T+L + L +QV G+ Y+ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 76 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
+ P ++ Q ++ M + F + D +TE G+ E
Sbjct: 73 PLVPADEKHLRQMRNKIG-MVFQSFNLFPHKTV-----LDNVTEAPVLVL--GMARAEAE 124
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
M+ ++ ++GL AD D M +SGGQ++R+ L
Sbjct: 125 KRAME---------------LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE---AYELFDDVILL 252
+V+ DE+++ LD +++ + R L +++L E A E D V
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVI----RRLASEHDLTMLLVTHEMGFAREFADRVCFF 220
Query: 253 SEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 290
+G+IV QG + F PK + +FL +V
Sbjct: 221 DKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 782
G + A++G SGAGK+TL++++AG G I D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 842
LTV +++ L L ++L ++ E+V++ + ++ L LP LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQ--EKVVDAAQQVGIADYLDRLP--EQLSG 131
Query: 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 901
QR+R+ +A LV I+ +DEP S LD ++ V+ + + RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 902 DIFESFDELLFMKRG 916
D ++ + +G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 58/249 (23%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+++ LS + LLGP +GK+T+ + LG +GKIT G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMI---LGMTSPDAGKITVLG----VPVPAR 108
Query: 81 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
V Q D E TVRE +
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRE----------------------------------N 134
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
L +F + F + ++ V+ +++ L++ AD V D +SGG K+RLT L+
Sbjct: 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILL 252
++L +DE + GLD + I + L R+L G T++ EA L D + +L
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERL----RSLLARGKTILLTTHFMEEAERLCDRLCVL 245
Query: 253 SEGQIVYQG 261
G+ + +G
Sbjct: 246 EAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 65/227 (28%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI------IEGDIYISGYPKRQ 768
+L +++ PG +TAL+G +GAGK+TL+ LAG TGG + GD+ ++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 824
I +P L L ++L A Q AF E+V L
Sbjct: 76 --------------IDAPRLARLRAVLPQA-----------AQPAFAFSAREIVLLGRYP 110
Query: 825 -TSLSGAL-----------IGLPG--------INGLSTEQRKRLTIAVEL---------V 855
+GAL + L G + LS + R+ A L
Sbjct: 111 HARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170
Query: 856 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQPSI 901
P + +DEPT+ LD ++ TVR + V I H P++
Sbjct: 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-07
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 37 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEM 95
++GP +GK+TLL +AG + SG I N P R + + Q++ A +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 96 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155
TVR+ + G+ P +K A +K V
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEK----VVD 111
Query: 156 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 215
+ +G+ D L +SGGQ++R+ LV P +L +DE + LD +
Sbjct: 112 AAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 216 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
++ +K T ++ + +A + + ++S+G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP-----KRQETFARISGY 777
G +TA++G +GAGK+TL L GI++ G I G P K G
Sbjct: 32 GEVTAILGGNGAGKSTLFQNL-----NGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86
Query: 778 CEQNDIHSP-GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
Q+ + +V + + F A L+LP E E ++ V+ ++ + L
Sbjct: 87 VFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK----- 137
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVC 894
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G TI+
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 895 TIHQPSIDIFESF-DELLFMKRGGELIYAGP 924
H IDI + D + MK G ++ P
Sbjct: 198 ATH--DIDIVPLYCDNVFVMKEGRVILQGNP 226
|
Length = 283 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG----HGFKEFV 77
L ++ I+ +T +LG +GK+TL L G L SG+I ++G + K +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGLM 78
Query: 78 PPRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
R S + Q D Q+ +V + + F + E+ +R
Sbjct: 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-----EVRKR------------ 121
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
V+ +K G++ + D+ +S GQKKR+ +LV
Sbjct: 122 -----------------VDNALKRTGIEH-----LKDKPTHCLSFGQKKRVAIAGVLVME 159
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL--LQPAPEAYELF-DDVILL 252
+VL +DE + GLD +I+K L + L T +I+ + P L+ D+V ++
Sbjct: 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP----LYCDNVFVM 215
Query: 253 SEGQIVYQG 261
EG+++ QG
Sbjct: 216 KEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 729 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN-DIH 784
TAL+G +GAGK+TL+ L G G + + G E + G Q+ D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 785 SPGLTVLESLLFSAW-LRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 842
TV + + F + L E+E +R VEE ++ V + LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVE---RR--VEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 902
Q+KR+ IA L +P ++ +DEP + LD R +M + + N G+T++ H +D
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVD 199
Query: 903 IFESF-DELLFMKRGGELIYAGP 924
+ + D+++ +K G L
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 61/255 (23%), Positives = 96/255 (37%), Gaps = 48/255 (18%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFV 77
+DD+S +R L+G SGK+TL LAG L SG I ++G E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELR 363
Query: 78 PPRTSAYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
R + QD + MTV + L E
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDILA------------------------------EP 393
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
L I G + V +++++GL E+ SGGQ++R+ L
Sbjct: 394 LRIHGG---GSGAERRARVAELLELVGLPPEFLDRYPHEL----SGGQRQRVAIARALAL 446
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
++L +DE + LD S Q++ LK L G T + + + D V ++ +
Sbjct: 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMYD 505
Query: 255 GQIVYQGPRVSVLDF 269
G+IV +GP V +
Sbjct: 506 GRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 70/273 (25%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+R + G+R ILD + + + +LG SGK+TLL + G L G+
Sbjct: 11 VRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGE 64
Query: 66 ITYNGHGFKEFVPPRTSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 119
I +G + + QQ + +TV E + F + E
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLRE 112
Query: 120 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 179
+ P+ + L K LV GL A L E +S
Sbjct: 113 HTK-------LPESLIR------ELVLMKLELV--------GLRGAAADLYPSE----LS 147
Query: 180 GGQKKRLTTGELLVGPAR-------VLFMDEISNGLD--SSTTY-QIIKYLKHSTRALDG 229
GG +KR V AR +LF+DE ++GLD S+ ++I+ L + G
Sbjct: 148 GGMRKR-------VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----G 196
Query: 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 262
TVI + + D V +L++G+++ +G
Sbjct: 197 LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 51/252 (20%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
+D++S + P + LLGP +GKTT + G L G+IT+NG + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEI 70
Query: 78 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
R Y+ ++ +MTV + L + + +G+ + +I + L
Sbjct: 71 KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGM-----------PKAEIQ-----KKLQA 113
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
+++ + G+KT + E+ KG QK + + ++
Sbjct: 114 WLERLEIVGKKTKKI-------------------KELSKGNQ--QKIQFISA--VIHEPE 150
Query: 198 VLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
+L +DE +GLD I LK G T+I EL D +++L +
Sbjct: 151 LLILDEPFSGLDPVNVELLKDAIFELKEE-----GATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 255 GQIVYQGPRVSV 266
GQ V G +
Sbjct: 206 GQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 158 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII 217
KI+ DT+VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T +I
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 218 KYLKHSTRALDGTTVISLLQPAPEAYELF-----DDVILLSEGQIVYQGPRVSVLD---F 269
L+ G T I + A+ L D +I+L +G+IV +G +L
Sbjct: 178 AALR---DVSKGRTTIVI------AHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
Query: 270 FASM 273
+A M
Sbjct: 229 YAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 46/229 (20%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-------G 763
D ++L N++ G + ++G SGAGK+ LM VL G G I G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 764 YPKRQETFARISGYC----EQNDIHSPGL--------------------------TVLES 793
Y +R C E ++ L TVL++
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 794 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE 853
+L + L EI E + A V ++L+E+ LS + + LS +++R+ +A +
Sbjct: 131 VLEA----LE-EIGYEGKEA-VGRAVDLIEMVQLSHRITHIA--RDLSGGEKQRVVLARQ 182
Query: 854 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSI 901
L P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 183 LAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 46/207 (22%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
E Q+L N++ + G AL+G SG+GK+TL+ +L G +G+I + G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---- 65
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
+S + L S I + QR + L + T +
Sbjct: 66 ----VSDLEKA---------------------LSSLISVLNQRPY------LFDTTLRNN 94
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
+G S +R+RL +A L+ + IV +DEPT GLD ++ + V
Sbjct: 95 --LGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKD 147
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRG 916
+T++ H + E D++LF++ G
Sbjct: 148 KTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 58/299 (19%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
SK L+D+S I T L+G SGK+T+ + G L + KIT +G
Sbjct: 18 SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 77 ----VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 132
+ + D Q TV + + F + + V R ++ I D
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP-----------RPEMIKIVRD 126
Query: 133 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGEL 191
D+ M + D +SGGQK+R+ G L
Sbjct: 127 VLADVGMLDYI----------------------------DSEPANLSGGQKQRVAIAGIL 158
Query: 192 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 251
V P +++ +DE ++ LD + QI+K ++ + + TVIS+ EA + D V++
Sbjct: 159 AVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLV 215
Query: 252 LSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFL--------QEVTSKKDQEQY 299
L +G+++ QG V + + +G P + + L QE+ +++ QY
Sbjct: 216 LDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 42/233 (18%)
Query: 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 777
RPG ALVG SGAGK+TL +L + G I + G RQ E AR++
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRARMA-- 417
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 835
L + +LF+A + I A EEV + LP
Sbjct: 418 ----------LVPQDPVLFAASVM--ENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 836 --------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
G+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + ++
Sbjct: 466 YDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM- 523
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRG--------GELIYAGPLGSKSCEL 932
GRT + H+ + + D ++ M +G ELI G L ++ L
Sbjct: 524 KGRTTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 28/156 (17%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 775
G+ TAL G SG+GKT+L++++AG R G IE G + + P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK----RRI 78
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
GY Q+ P TV +L + W + ++ + +LV L + L P
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYP 126
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
G LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 G--TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 772
L +V+ + G A+VG +G+GK+TL +L G++ G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL-----NGLLLPEAGTITVGGMVLSEETVW 77
Query: 773 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQ----RAFVEEVMELVEL 824
+ G QN D G TV + + F LE VE V + +
Sbjct: 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFG----------LENIGVPREEMVERVDQALRQ 127
Query: 825 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
+ L P + LS Q++R+ IA L P I+ +DE TS LD R V+ TVR
Sbjct: 128 VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 885 IVNTGRTIVCTI-HQPSIDIFE--SFDELLFMKRG 916
+ V +I H D+ E D ++ M +G
Sbjct: 186 LKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPP 79
+L+D+S I ++ LLGP SGKTTLL +AG L H Q SG I ++G
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLHARD 73
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK--IAGIKPDEDLDI 137
R +V Q MTV + + F +T L RRE+ A IK
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK------- 114
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
K V +++++ L AD +SGGQK+R+ L +
Sbjct: 115 ---------AK----VTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQ 156
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
+L +DE LD+ ++ ++L+ L T+V + EA E+ D V+++S+G I
Sbjct: 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 732 VGVSGAGKTTLMDVLAGR--KTGGIIE-GDIYISGYP--KRQETFARI-----SGYCEQN 781
+G +GAGK+TL++ +AG T G I + ++ KR AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 782 DIHSPGLTVLESLLFSAWLR-----LPSEIELETQRAFVEEVMELVE-LTSLSGALIGLP 835
P LT+ E+L A R L S + + +F E + L L + IGL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
LS QR+ L++ + + P I+ +DE T+ LD + A VM IV
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
|
Length = 263 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR--ISGYCEQN 781
G A++G SGAGK+TL++++AG T G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 782 DIHSPGLTVLE--SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
++ LTV + L + L+L + QR + + + + L L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA-----QREKLHAIARQMGIEDL---LARLPG--Q 129
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 48/208 (23%), Positives = 67/208 (32%), Gaps = 55/208 (26%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VS 63
R L RG R + + LS + + GP GKTTLL LAG L S
Sbjct: 3 ARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-----LLRPDS 54
Query: 64 GKITYNG--HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 121
G++ +NG + P R Y+ E++ E L F
Sbjct: 55 GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHF------------------ 96
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181
A I I + V GL D +S G
Sbjct: 97 ----WAAIHGGAQRTIE--------DALAAV--------GLTGFEDLPAAQ-----LSAG 131
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLD 209
Q++RL L + A + +DE + LD
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPK 766
L NV+ G A++G +G+GK+T+ +L G++ G+I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT-----GLLKPQSGEIKIDGITI 73
Query: 767 RQETFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVME 820
+E I G QN D G TV + + F + P ++ + ++++ +
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM-----KDIIDDLAK 128
Query: 821 LV--------ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
V E +LSG Q++R+ IA L NP I+ DE TS LD
Sbjct: 129 KVGMEDYLDKEPQNLSGG-------------QKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 873 RAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESF--DELLFMKRGGELIYAG 923
+ + + + ++ T +T++ H D+ E+ D+++ G+LI G
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +T+ H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 899 PSIDIFESFDELLFMKRGGELIYAG 923
+ E DE++ M + G+++ G
Sbjct: 236 ME-HVLEVADEVIVMDK-GKILKTG 258
|
Length = 320 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 34/162 (20%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 46 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETL 101
+TLL + G L SG I +G + V Q E+TVRE L
Sbjct: 1 STLLKLITGLL---QPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 102 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161
F G++ E E ++ +G
Sbjct: 58 FF------------------------GLRDKEADA---------------RAEEALERVG 78
Query: 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 203
L D + SGGQK+R+ L+ ++L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 705 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII----EGD 758
Q GV RL +L NV+ G AL G SGAGK+TL+ L G I EG
Sbjct: 16 QGGV---RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGA 72
Query: 759 -IYISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 815
+ ++ R+ R GY Q P ++ LE + L E RA
Sbjct: 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-LERGVPREAARARA-- 129
Query: 816 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
EL+ ++ L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 130 ---RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 876 AIVMRTVRNIVNTGRTIVCTIHQPSI 901
+V+ + G ++ H +
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYP----- 765
L+ ++ + + G + ALVG SG+GK+ ++ +L T G+I + G P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 766 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRL-----PSEIELETQRAF---- 814
R A I QN + P T+ + + + LE A
Sbjct: 59 IRGRHIATIM----QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114
Query: 815 VEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
EEV++ LSG ++ +R+ IA+ L+ P + DEPT+ LD
Sbjct: 115 PEEVLKKYPF-QLSGGML-------------QRVMIALALLLEPPFLIADEPTTDLDVVN 160
Query: 875 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925
A V++ +R + G I+ H + + DE+ M G ++ G +
Sbjct: 161 QARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL-----AGRKTGGIIEGDIYISGYPKRQ 768
Q L ++T G L+G SGAGK++L+ VL T I S P +
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 769 ETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
R G Q P LTV E+L+ + L + RA E++++ + L
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA--EKLLKRLRLKP 133
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
+ P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +
Sbjct: 134 YADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 887 NTGRTIVCTIHQ 898
TG T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229
V + + G+SGGQ++R+ L VL +DE ++ LD T ++ LK S +A G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK-SLQAQLG 151
Query: 230 TTVISLLQPAPEAYELFDDVILLSEGQ 256
TV+ + EA L D V++L +G+
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-07
Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 45/249 (18%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---G 72
K +L D+S I P ++GP SGK+TL+ L SG+I +G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRD 395
Query: 73 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 132
+ VSQ + T+RE + G E+ K+A
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIAL-------GRPDATDEEIEEALKLANAH-- 445
Query: 133 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 192
E+I L DT+VG E +SGGQ++RL L
Sbjct: 446 ---------------------EFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARAL 480
Query: 193 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
+ +L +DE ++ LD+ T I LK + L G T + + + D +I+L
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALK---KLLKGRTTLIIAH-RLSTIKNADRIIVL 536
Query: 253 SEGQIVYQG 261
G+IV +G
Sbjct: 537 DNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-07
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 64/300 (21%)
Query: 10 RIYRGNRSKLTI-LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKI 66
+ + + LDD+S I + ++G +GK+TLL RL + L+ SG +
Sbjct: 9 KTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLINLLERPTSGSV 63
Query: 67 TYNGHGFKEFVPP------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
+G + + Q ++ TV E + F + GV K E+
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PK----AEI 118
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
+R V E + +++GL AD +SG
Sbjct: 119 KQR----------------------------VAELL-ELVGLSDKADRYPAQ-----LSG 144
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQK+R+ L ++L DE ++ LD TT I++ LK R L G T++ L+
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIV-LITHEM 202
Query: 241 EAYELF-DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 299
E + D V +L +G++V +G V + FA+ PK +F+ E E+
Sbjct: 203 EVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 61/261 (23%), Positives = 102/261 (39%), Gaps = 63/261 (24%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
T+LD + +R L L+GP +GKTTLL A+ G L +G + G + V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAG----DDVEA 69
Query: 80 RTSAYVSQQDWQVAEMTVRETL--DFAGQCQGVGSKYDMITELAR---REKIAGIKPDED 134
++ S++ VA + +L +F + + E+ R R + +
Sbjct: 70 LSARAASRR---VASVPQDTSLSFEFDVR---------QVVEMGRTPHRSRFDTWTETDR 117
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
VE M+ G+ AD V +SGG+++R+ L
Sbjct: 118 A----------------AVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQ 156
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--------DGTTVISLLQPAPEAYELF 246
VL +DE + LD + H R L DG T ++ + A
Sbjct: 157 ATPVLLLDEPTASLD----------INHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC 206
Query: 247 DDVILLSEGQIVYQGPRVSVL 267
D+++LL++G++ GP VL
Sbjct: 207 DELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQND 782
G TA++G +G GK+TL+ L+ T G +++ G + + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 783 IHSPGLTVLESL---------LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
+TV E + LF+ W + E + A V + M+ +T L+
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK-------EDEEA-VTKAMQATGITHLADQ--- 139
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
++ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 140 --SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 6e-07
Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 57/227 (25%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----- 755
+E++ D +L NV +TAL+G SG GK+T + L + +I
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL--NRMNDLIPGFRH 61
Query: 756 EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI---- 806
EG IY+ G DI+ P + V+E ++F P I
Sbjct: 62 EGHIYLDG-----------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV 104
Query: 807 ------ELETQRAFVEEVMELVELTSLSGALIG-------LPGINGLSTEQRKRLTIAVE 853
E F+EE +E SL A + GLS Q++RL IA
Sbjct: 105 AYGLRIHGEDDEDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160
Query: 854 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR---TIVCTIH 897
+ +P ++ MDEP S LD I + ++++ + TIV H
Sbjct: 161 IAVSPEVILMDEPCSALD----PISTTKIEDLIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 7e-07
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 152 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 211
V +++LGL AD + +SGG+++R+ L +L +DE ++ LD +
Sbjct: 77 YVPQALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 212 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
++++ L+ R T V+ L A D VILL +G+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 7e-07
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L + G R T+LDDLS I + +LGP +GK+TLL LAG L SG+
Sbjct: 2 VENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGE 55
Query: 66 ITYNGH-----GFKEFVPPRTSAYVSQ 87
I +G KE R AYV Q
Sbjct: 56 ILLDGKDLASLSPKELA--RKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 7e-07
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
Y G +T L+D+S + L+GP GK+TLL +AG SG++ +G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGE 66
Query: 72 GFKEFVPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 127
P YV QQD W +TV + + + QGV RE+
Sbjct: 67 PVTG--PGPDRGYVFQQDALLPW----LTVLDNVALGLELQGVPKA-------EARER-- 111
Query: 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL- 186
E +++++GL + +SGG ++R+
Sbjct: 112 -------------------------AEELLELVGLSGFE-----NAYPHQLSGGMRQRVA 141
Query: 187 ---TTGELLVGPARVLFMDE 203
L V P VL +DE
Sbjct: 142 LARA---LAVDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 69/278 (24%), Positives = 107/278 (38%), Gaps = 66/278 (23%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 79
+++L+ I +L+GP SGKTT + + RL SG+I +G +E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEP--TSGEIFIDGEDIREQDPVEL 73
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R YV QQ MTV E + + + RE+ DE
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE-------KIRERA-----DE----- 116
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR- 197
++ ++GLD D +SGGQ++R VG AR
Sbjct: 117 -----------------LLALVGLD---PAEFADRYPHELSGGQQQR-------VGVARA 149
Query: 198 ------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 251
+L MDE LD T Q+ + K + L G T++ + EA+ L D + +
Sbjct: 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAI 208
Query: 252 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 289
+ G+IV G + + S P VA+F+
Sbjct: 209 MKNGEIVQVG---TPDEILRS-----PANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 60/260 (23%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITY 68
+IY K+ L D++ I ++GP SGK+T LL L G L + SG++
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGL---DKPTSGEVLI 64
Query: 69 NGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 121
NG + + +V Q + ++TV E ++ G +
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------R 117
Query: 122 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181
R+ E ++++LGL+ E+ SGG
Sbjct: 118 RKRAA---------------------------EELLEVLGLEDRLLKKKPSEL----SGG 146
Query: 182 QKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA- 239
Q++R+ L+ +++ DE N LDS T ++++ L+ + T ++
Sbjct: 147 QQQRVAIARALINNPKIILADEPTGN-LDSKTAKEVLELLRELNKERGKTIIM-----VT 200
Query: 240 --PEAYELFDDVILLSEGQI 257
PE + D VI L +G+I
Sbjct: 201 HDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------YPKRQETF 771
G AL+G SG+GK+T++ +L + I EG I + G P ++
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 772 ARIS---GYCEQNDIHSPGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELT 825
++ G Q+ P TVL+++ + L L +E E +RA MEL+++
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE---KRA-----MELLDMV 134
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
L+ +P LS Q++R+ IA L P ++ DE TS LD V+ +R +
Sbjct: 135 GLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 886 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ T++ H+ E D + F +G
Sbjct: 193 ASEHDLTMLLVTHEMGF-AREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 25/179 (13%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 784
G + G +GAGKTTL+ VLAG G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 785 SPGLTVLESLLFSAWL------RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
L+ LE+L F L ++P + +V L L+
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGS------------ALAIVGLAGYEDTLV-----R 136
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 137 QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 9e-07
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEGDIYISGYP----- 765
++L V +TAL+G SG+GK+TL+ V L + G++Y+ G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 766 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-RL-PSEIELETQRAFVEEV 818
+R + +I N I P L++ E++ L RL S+ EL+ + V
Sbjct: 77 VIELRRRVQMVFQIP-----NPI--PNLSIFENVALGLKLNRLVKSKKELQER---VRWA 126
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 874
+E +L + P LS Q++RL IA L P ++ DEPT+ LD A+
Sbjct: 127 LEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 875 AAIVMRTVRNIVNTGRTIVCTIHQP 899
++ + +++ TIV H P
Sbjct: 186 ESLFLELKKDM-----TIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
Q + +V+ +PG A+VG +GAGK+TL+++L ++ G I I G R T A
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRAS 406
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE--------LT 825
+ + + ++ LF+ + I + A EE+ E
Sbjct: 407 LR--------RNIAVVFQDAGLFNRSIE--DNIRVGRPDATDEEMRAAAERAQAHDFIER 456
Query: 826 SLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
G ++G G LS +R+RL IA L+ +P I+ +DE TS LD A V +
Sbjct: 457 KPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
+ GRT H+ S + D +L G ++ +G
Sbjct: 516 E-LMKGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 47/244 (19%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 79
LD++S IR ++G SGK+TLL LAG SG + +G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDIRQ-LDPAD 75
Query: 80 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
R YV Q T+R+ + G D + R ++AG +
Sbjct: 76 LRRNIGYVPQDVTLFYG-TLRDNITL-----GAPLADD--ERILRAAELAG------VTD 121
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
F+ G D +G E +G+SGGQ++ + L+
Sbjct: 122 FVNKHPNG--------------------LDLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
+L +DE ++ +D ++ ++ + L+ D T +I +P+ +L D +I++ G+I
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
Query: 258 VYQG 261
V G
Sbjct: 217 VADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 43/253 (16%)
Query: 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY--NGHGFKEF--VPP 79
D+S + P + ++G SGK+TLL LAGRL G TY E +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIMRSGAELELYQLSE 77
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
+ + +W R+ L R AG E L
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGL--------------------RMRVSAGANIGERL---- 113
Query: 140 KSFALG----GQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
A+G G + +++ ++ + + D++ + SGG ++RL LV
Sbjct: 114 --MAIGARHYGNIRATAQDWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLVTR 166
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255
R++FMDE + GLD S +++ L+ R L G VI + A L ++++ +G
Sbjct: 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQG 225
Query: 256 QIVYQGPRVSVLD 268
++V G VLD
Sbjct: 226 RVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 47/244 (19%)
Query: 29 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ 87
+ + +LGP +GK+TLL +AG SG+I NG P R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 88 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 147
++ A +TV + + G+ P L+ A +
Sbjct: 79 ENNLFAHLTVAQNIGL------------------------GLSPGLKLN------AEQRE 108
Query: 148 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 207
K VE +GL L G+ +SGGQ++R+ LV +L +DE +
Sbjct: 109 K----VEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 208 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
LD + +++ + T ++ P +A + D V+ L G+I QG
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS---TQ 215
Query: 268 DFFA 271
+ +
Sbjct: 216 ELLS 219
|
Length = 231 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 62/262 (23%), Positives = 94/262 (35%), Gaps = 74/262 (28%)
Query: 25 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RT 81
LS +R + L+GP +GK+TLL +AG L SG I + G + + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 141
AY+SQQ M V + L + +
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQP--------------------DKTRTEAVAS----- 105
Query: 142 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVGP---- 195
+ + + LGLD D L + +SGG Q+ RL L V P
Sbjct: 106 ----------ALNEVAEALGLD---DKL--GRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150
Query: 196 -ARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVIS------LLQPAPEAYEL 245
++L +DE N LD + +++ L V+S L+ A
Sbjct: 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELC----QQGIAVVMSSHDLNHTLRHA------ 200
Query: 246 FDDVILLSEGQIVYQGPRVSVL 267
D V LL +G+++ G R VL
Sbjct: 201 -DRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 56/243 (23%)
Query: 32 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFKEFVPP--RTSAY 84
+T L GP SGKT+L+ +AG G+I NG F+PP R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLT--RPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 144
V Q TVR L + G + + +++D + L GI+
Sbjct: 81 VFQDARLFPHYTVRGNLRY-GMWKSMRAQFDQLVALL------GIEH------------- 120
Query: 145 GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEI 204
L+ Y + SGG+K+R+ G L+ +L MDE
Sbjct: 121 ------LLDRYPGTL-------------------SGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 205 SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 264
LD +I+ YL+ ++ ++ + E L D V++L G++ GP
Sbjct: 156 LASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 265 SVL 267
V
Sbjct: 215 EVW 217
|
Length = 352 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 45/194 (23%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 75
R++ + L + L+ G +GKTTLL LAG L H++ SG+I +G
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--HVE-SGQIQIDGKTATR 77
Query: 76 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
R AY+ A+++ E L F G RR K
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------------RRAKQ--------- 116
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
M AL I+GL DTLV + +S GQKKRL L + P
Sbjct: 117 ---MPGSALA-------------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSP 155
Query: 196 ARVLFMDEISNGLD 209
A + +DE LD
Sbjct: 156 APLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 62/196 (31%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
L ++T + +TAL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNG--- 72
Query: 767 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI----------ELETQ 811
+I G V+ ++F P I E
Sbjct: 73 --------------ENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 812 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 860
+ ++ ++E SL GA + L LS Q++RL IA L NP +
Sbjct: 119 KKTLDTIVE----KSLKGAALWDEVKDRLHDSAL----SLSGGQQQRLCIARTLAVNPEV 170
Query: 861 VFMDEPTSGLDARAAA 876
+ MDEP S LD A A
Sbjct: 171 ILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 38/191 (19%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-----IEGDIYISG---YPKR 767
L +V+ F P +TAL+G SG+GK+TL+ + + + I G I +G Y R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSI--NRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 768 QET--FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
+T + G Q P +++ E++++ LRL + + ++E +E
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKD----KQVLDEAVE----K 127
Query: 826 SLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
SL GA I L GLS Q++R+ IA L +P I+ +DEPTS LD +
Sbjct: 128 SLKGASIWDEVKDRLHDSAL----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPIS 183
Query: 875 AAIVMRTVRNI 885
A + T+ +
Sbjct: 184 AGKIEETLLGL 194
|
Length = 252 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 34/213 (15%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY-------PKRQETFARIS 775
G + ++G+SG+GK+T + +L +IE G I+I G + +E +
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML-----NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
G Q P +T+L++ L P + +R E+ +EL++L L
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQ-----ERK--EKALELLKLVGLEEYEHRY 126
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 893
P + LS ++R+ +A L A P I+ MDE S LD + ++ + T +TIV
Sbjct: 127 P--DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIV 184
Query: 894 CTIHQPSIDIFESF---DELLFMKRGGELIYAG 923
H D+ E+ D ++ MK GE++ G
Sbjct: 185 FITH----DLDEAIRIGDRIVIMK-AGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 772
L N+ + G ++G +G+GK+TL L G + G ++ I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 773 RISGYCEQN-DIHSPGLTVLESLLFSAW-LRLP-SEIELETQRAFVEEVMELVELTSLSG 829
++ G QN + G TV E L F L LP EI RA E +E S
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS--- 133
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
P LS Q + + +A L P + DE TS LD + V+ ++ + G
Sbjct: 134 -----P--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRG 916
+TIV H +++ D ++ M RG
Sbjct: 187 KTIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 2e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
K T LDD+S + + LLGP +GKTTL+ + G L SG+I G K+
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP 68
Query: 78 P--PRTSAYVSQQDWQVAEMTVRETLDF 103
R Y+ ++ +TVRE L
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 2e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEFVP- 78
+L D+S I+P ++GP SGK+TLL L SG+I +G ++
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR----LYDPTSGEILIDGVDLRDLDLE 72
Query: 79 --PRTSAYVSQQDWQVAEMTVRE 99
+ AYV Q + + T+RE
Sbjct: 73 SLRKNIAYVPQDPF-LFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-- 78
IL ++ ++ + ++GP SGK+TL +AG + + SG I + G E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDE 73
Query: 79 -PRTSAYVS-QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
R +++ Q ++ ++ E L A ARR A + DL
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRS--ARGEEPLDLL 117
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-----GISGGQKKRLTTGEL 191
F+K +++ + +LG+D +E L G SGG+KKR ++
Sbjct: 118 DFLK-----------LLKAKLALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 192 LVGPARVLFMDEISNGLD 209
+ ++ +DEI +GLD
Sbjct: 159 ALLEPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 64/258 (24%), Positives = 93/258 (36%), Gaps = 58/258 (22%)
Query: 37 LLGPPSSGKTTLLLALAGRLGHHLQVS-GKITYNGHGFKEFVPP--RTSAYVSQQDWQVA 93
LLGP GKTTLL LAG Q G I +G VPP R V Q
Sbjct: 1 LLGPSGCGKTTLLRLLAG----FEQPDSGSIMLDGEDVTN-VPPHLRHINMVFQSYALFP 55
Query: 94 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 153
MTV E + F + + V R +I
Sbjct: 56 HMTVEENVAFGLKMRKVP-----------RAEIK-------------------------- 78
Query: 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 213
+++ L L + D +SGGQ++R+ LV ++L +DE + LD
Sbjct: 79 PRVLEALRLVQLEE--FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136
Query: 214 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG-PRVSVLDFFAS 272
Q+ LK L G T + + EA + D + ++ +G+I G P
Sbjct: 137 DQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------- 188
Query: 273 MGFSCPKRKNVADFLQEV 290
+ P VA F+ E+
Sbjct: 189 --YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQK+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITH 199
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 297
+ D V ++S G+++ QG +V + F+ PK F++ E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH-----PKTPLAQKFIRSTLHLSIPE 251
Query: 298 QY 299
Y
Sbjct: 252 DY 253
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 64/192 (33%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
Q L + +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 767 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE-----------LET 810
DI+ + V + ++F P I ++
Sbjct: 70 --------------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD 115
Query: 811 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 859
++ ++ E+VE SL GA + L GLS Q++RL IA L P
Sbjct: 116 KK----KLDEIVE-KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPE 166
Query: 860 IVFMDEPTSGLD 871
++ MDEPTS LD
Sbjct: 167 VLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 782
G + AL+G SG GK+TL+ +LAG + G I+ + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 783 IHSPGLTVLESLLFS-AWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 840
P +TV +++ F +LP +EI R V E++ LV + + + L
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEI---ASR--VNEMLGLVHMQEFAKR-----KPHQL 150
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQP 899
S QR+R+ +A L P ++ +DEP LD + + V +I+ G T V H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH-- 208
Query: 900 SIDIFESFD---ELLFMKRGG-------ELIYAGPLGSKSCELIKYFEAVEGVPKIR 946
D E+ + M RG E IY P S E I EGV K R
Sbjct: 209 --DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKER 263
|
Length = 377 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 637 VVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYF 696
++ L R R E +E + + KG+ FQ + +FG
Sbjct: 336 PMAYPHLLLAPRYRMVEK--LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRV 393
Query: 697 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 756
+ E + L L + PG + A+VG SGAGKTTL+ ++ G
Sbjct: 394 I--------ERYVLRNLNLEIK------PGDVVAVVGQSGAGKTTLLRMILG-------- 431
Query: 757 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELE-TQRAFV 815
+ G + + P +E + +P E E E + +
Sbjct: 432 --------------AQKGRG----EEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473
Query: 816 EEV----------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865
E + +E++ LS A++ + LST Q++R +A L P+++ +DE
Sbjct: 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533
Query: 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 901
+ LD A V R + + G T++ H+P +
Sbjct: 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR 767
R Q+L +++ G + AL+G SG+GKTTL+ ++AG + +G I +S R
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 768 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
R G+ Q+ +TV +++ F L + E A +V +L+E+ L
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQL 126
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
+ P LS Q++R+ +A L P I+ +DEP LDA+ + R +R +
Sbjct: 127 AHLADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182
|
Length = 353 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 29/171 (16%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK----TGGIIEGDIYISG---YPKRQET 770
+V P +TA +G SG GK+T++ L R G +EG++ + G Y +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80
Query: 771 FA--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
A R G Q P +++ ++++ A L+L + ++E++E SL
Sbjct: 81 VAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLR 130
Query: 829 GA--------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
GA + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 131 GANLWNEVKDRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 61/198 (30%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
Q L +V +TA +G SG GK+T + D + G + + G I + G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG--- 85
Query: 767 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI-----------ELET 810
DI+ P L V+E ++F P I L
Sbjct: 86 --------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR 131
Query: 811 QRAFVEEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVANPSI 860
+A ++E++E TSL A GL PG GLS Q++RL IA + +P +
Sbjct: 132 SKAELDEIVE----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEV 184
Query: 861 VFMDEPTSGLDARAAAIV 878
+ MDEP S LD A A V
Sbjct: 185 ILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 79
L+D++ I +++T L+GP GK+T L L L ++++ G++ +G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
+ +D V E+ R + F S YD + A +I GIK ++LD
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNV---AYGPRIHGIKDKKELD--- 121
Query: 140 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+VE+ +K L D D L + +SGGQ++RL + V
Sbjct: 122 -----------KIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDV 168
Query: 199 LFMDEISNGLDSSTTYQI 216
+ MDE ++ LD +T +I
Sbjct: 169 ILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 4e-06
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
+ L E LK +SGG K+RL + L+ +L +DE ++GLD + + + L+ +
Sbjct: 86 ENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK- 143
Query: 227 LDGTTVI---SLLQPAPEAYELFDDVILLSEGQI 257
+G T++ +L+ EA L D V +L+ G+I
Sbjct: 144 -EGKTILLSSHILE---EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 51/252 (20%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHG 72
NR + +L L+ + P + L+GP SGK+T+ L +L G++ +G
Sbjct: 490 NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL-----QNLYQPTGGQVLLDGVP 544
Query: 73 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA-GIKP 131
++ Y+ +Q V + E + F+G RE IA G+
Sbjct: 545 LVQY----DHHYLHRQVALVGQ----EPVLFSGSV---------------RENIAYGLTD 581
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTTG 189
D +I + K + ++IM DT VG+ KG +SGGQK+R+
Sbjct: 582 TPDEEI------MAAAKAANAHDFIM---EFPNGYDTEVGE---KGSQLSGGQKQRIAIA 629
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
LV RVL +DE ++ LD+ + L +R+ TV+ + E D +
Sbjct: 630 RALVRKPRVLILDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLSTV-ERADQI 683
Query: 250 ILLSEGQIVYQG 261
++L +G +V G
Sbjct: 684 LVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 79
LD +S +I P L+G SGK+TL+ L R SG+I +GH ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEP--DSGQILLDGHDLADYTLASL 404
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R A VSQ + +T+ G + D A E+ +
Sbjct: 405 RRQVALVSQD-----VVLFNDTI-ANNIAYGRTEQADR----AEIERALA-------AAY 447
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+ F + L DT +G+ + +SGGQ++RL L+ A +
Sbjct: 448 AQDF----------------VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 258
L +DE ++ LD+ + + L+ + + L +A D ++++ +G+IV
Sbjct: 491 LILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA----DRIVVMDDGRIV 546
Query: 259 YQGPRVSVLD 268
+G +L
Sbjct: 547 ERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 28/238 (11%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTG 752
V+L+Q V + + +V+ F +TA++G SG GK+T++ + + R TG
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64
Query: 753 GII--EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 810
I+ + DIY G + R G Q P +++ ++++ A +L +
Sbjct: 65 KILLDDTDIYDRGVDP--VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSE 120
Query: 811 QRAFVEEVMELVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865
VE ++ V L L + L G Q++RL IA + P ++ MDE
Sbjct: 121 ADEIVESSLKRVALWDEVKDRLKSNAMELSG------GQQQRLCIARTIAVKPEVILMDE 174
Query: 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
P S LD + + + + I+ T + + +M G+L+ G
Sbjct: 175 PASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM---GDLVECG 229
|
Length = 252 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 772
L ++G R G + LVG +GAGK+TL+ +AG +G G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R Y Q +P W L +T+ + +V + L G
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS- 122
Query: 833 GLPGINGLSTE--QRKRLT---IAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNI 885
N LS QR RL + + ANP+ ++ +DEP + LD + + R + +
Sbjct: 123 ----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
G IV + H + +KR G+L+ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 64/197 (32%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
Q L +++ F +TAL+G SG GK+T + D++ G + +EG+I + G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDG--- 72
Query: 767 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------- 810
+I+ P + V+E ++F P I E
Sbjct: 73 --------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSI-FENVAYGLRVNGVK 117
Query: 811 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 859
+A++ E +E SL A + L GLS Q++RL IA L P
Sbjct: 118 DKAYLAERVE----RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPE 169
Query: 860 IVFMDEPTSGLDARAAA 876
++ MDEP S LD A
Sbjct: 170 VLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 43/247 (17%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
+ L + + + +LG SGK+TLL LAG G IT NG
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIASL 405
Query: 77 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
R + V Q + T+R+ L A A E++
Sbjct: 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPD-------------ASDEELWAALQQVG 452
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
L+ ++S A G T L E + +SGG+++RL L+
Sbjct: 453 LEKLLES-APDGLNTWL--------------------GEGGRRLSGGERRRLALARALLH 491
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
A + +DE + GLD T Q++ L +G T++ + E D +I+L
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEH---AEGKTLLMVTHRLRGL-ERMDRIIVLDN 547
Query: 255 GQIVYQG 261
G+I+ +G
Sbjct: 548 GKIIEEG 554
|
Length = 573 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 60/207 (28%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
+L DLS I ++GP +GK+TLL LAG LG SG + G K
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKV-GETVK--- 386
Query: 78 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
Y Q R+ LD + + ++E PD D +
Sbjct: 387 ----IGYFDQH---------RDELD------PDKTVLEELSEGF---------PDGD-EQ 417
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI---SGGQKKRLTTGELLVG 194
++++ LG G G++ K + SGG+K RL +LL+
Sbjct: 418 EVRAY-LGR-------------FGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLK 221
P +L +DE +N LD + + + L
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALL 483
|
Length = 530 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 26/191 (13%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI--S 775
+V+ + R G + + G+ GAG+T L+ L G G EG+++I+G P A+ +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRA 336
Query: 776 GYC------EQNDI-------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 822
G +++ I + L+VL+S F +R+ + EL+ + ++ +
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKS--FCFKMRIDAAAELQIIGSAIQRL---- 390
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
+ A LP I LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 391 ---KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 883 RNIVNTGRTIV 893
+ G I+
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 51/147 (34%)
Query: 730 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYCEQNDIHSP 786
LVG SG GK+TL GR G+ E G+I G DI
Sbjct: 43 GLVGESGCGKSTL-----GRLILGLEEPTSGEILFEG-----------------KDIT-- 78
Query: 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG-LPGINGLSTEQR 845
+L E E V+EL+E L + P + LS QR
Sbjct: 79 --------------KLSKEERRE-------RVLELLEKVGLPEEFLYRYP--HELSGGQR 115
Query: 846 KRLTIAVELVANPSIVFMDEPTSGLDA 872
+R+ IA L NP ++ DEP S LD
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFA 772
L +V+ + G +++G +G+GK+T + R G++E G I I G +E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 773 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELV----- 822
I G QN D G TV + + F L ++ I E + V E +ELV
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGMQDF 133
Query: 823 ---ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
E LSG Q++R+ IA + P I+ +DE TS LD ++
Sbjct: 134 KEREPARLSGG-------------QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 880 RTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 916
+T++ I + T++ H +D D +L MK G
Sbjct: 181 KTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 5e-06
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 57/251 (22%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
S L L +++ I +LT+++G GK++LLLA+ LG + GK+ ++ E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEP 68
Query: 77 VPPRTS-------AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
T AY +Q+ W + TV E + F +Y +T+ +
Sbjct: 69 SFEATRSRNRYSVAYAAQKPW-LLNATVEENITFGSPFN--KQRYKAVTD------ACSL 119
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
+PD DL G Q T +G+ + +SGGQ++R+
Sbjct: 120 QPDIDL------LPFGDQ--------------------TEIGERGIN-LSGGQRQRICVA 152
Query: 190 ELLVGPARVLFMDEISNGLD---SSTTYQ--IIKYLKHSTRALDGTTVISLLQPAPEAYE 244
L ++F+D+ + LD S Q I+K+L+ R L V LQ P A
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL--VLVTHKLQYLPHA-- 208
Query: 245 LFDDVILLSEG 255
D +I + +G
Sbjct: 209 --DWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISG-- 763
L ++ + A +G SG GK+T + D++ + +EG+I I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 764 -YPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
Y K + + + G Q P ++ E++ + LR+ + R VEE ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 821 LVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
L L + L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 129 GAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182
Query: 876 AIVMRTVRNIVNTGRTIVCTIH 897
A V + + TIV H
Sbjct: 183 AKVEELIHELKKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 32/157 (20%)
Query: 728 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-- 785
LT L+G SG GKTT++ ++AG +T G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFET--PDSGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 786 ------PGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
P +TV E++ F LR+ P+ E+ + V E + +V+L +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAA-EITPR---VMEALRMVQLEEFAQR-----K 141
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
+ LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 142 PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 17/227 (7%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 765
R +L NV+ + G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 766 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
K++ F R Q+ + P +TV + + LR + ++ Q+A + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L S LP LS Q +R+ IA L P ++ +DE S LD A+++ +R
Sbjct: 139 LR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 930
+ T I + + +SF + + + G+++ +
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 53/228 (23%)
Query: 1 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRL 56
MTE +L L +Y K L+ +S P+ +T L+GP SGK+TLL ++ L
Sbjct: 1 MTEPILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 57 GHHLQVSGKITYNGHGFKEFVPPRTS--------AYVSQQDWQVAEMTVRETLDFAGQCQ 108
+ ++G I YNGH PRT V QQ M++ E + +
Sbjct: 58 NPEVTITGSIVYNGH---NIYSPRTDTVDLRKEIGMVFQQP-NPFPMSIYENVVYG---- 109
Query: 109 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 168
++ GIK + LD ++ SL I D D
Sbjct: 110 ---------------LRLKGIKDKQVLDEAVEK--------SLKGASIW-----DEVKDR 141
Query: 169 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 216
L D L G+SGGQ++R+ +L +++ +DE ++ LD + +I
Sbjct: 142 L-HDSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L +V +PG + G +G+GK++L LA + I +G I I G
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGI---------- 83
Query: 775 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
DI L L S +LFS +R + E + + E +E+ +L
Sbjct: 84 -------DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLK 136
Query: 826 SLSGALIGLPGINGLSTE--------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 877
++ +L G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 878 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + V RT+V H+ S I ++ D +L + RG
Sbjct: 195 LQKVVMTAF-ADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 772
L L N+ G LT +VG G GK++L+ + G +EG ++ S + + +F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFE 71
Query: 773 RISG---YCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
Y P L TV E++ F S + +A + ++
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFG------SPFNKQRYKAVTDACSLQPDIDL 125
Query: 827 L---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT-- 881
L IG GIN LS QR+R+ +A L N +IVF+D+P S LD + +M+
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 882 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
++ + + RT+V H+ + D ++ MK G
Sbjct: 185 LKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 730 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--RISGYCEQNDIHSPG 787
ALVG +G+GK+TL +L G + EG+I + G P + + R Q D
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD----- 423
Query: 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGL 840
V+ + F A + L +I E V + +E V+L L+ +L +G G N L
Sbjct: 424 -PVVLADTFLANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNL 477
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900
S Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLS 536
Query: 901 IDIFESFDELLFMKRG 916
I E+ D +L + RG
Sbjct: 537 T-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 18/201 (8%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEG 757
+E K+ ++L +++ F G + +VG SGAGK+TL+ + L G I+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 758 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 817
+ I R G Q G TV +++ + L+ ++ VE
Sbjct: 64 GVDIKTIDVID--LRRKIGMVFQQPHLFEG-TVKDNIEYGPMLKGEKNVD-------VEY 113
Query: 818 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 877
+ +V L + LS + +R++IA L NP ++ +DEPTS LD + I
Sbjct: 114 YLSIVGLNKE----YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 878 VMRTVRNIVNT-GRTIVCTIH 897
+ + + N T++ H
Sbjct: 170 IEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS Q++R+ IA L P ++ DEPTS LD V++ ++++ GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 760
V L+ V + ++L +V+ +PG + L+G +GAGK+TL+ V+ G++ D
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-----GLVAPD-- 57
Query: 761 ISGYPKRQETFARISGYCEQN---DIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVE 816
G KR RI GY Q D P LTV + +LRL P T++ +
Sbjct: 58 -EGVIKRNGKL-RI-GYVPQKLYLDTTLP-LTV------NRFLRLRPG-----TKKEDIL 102
Query: 817 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
++ V+ +G LI P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 103 PALKRVQ----AGHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 1 MTEALL--RQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 57
M LL L + + + ++ + D+S + P + ++G SGK+TL LAL G L
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 58 HHLQV-SGKITYNG--------HGFKEFVPPRTSAYVSQQDWQVAE--MTVRETLDFAGQ 106
++ SG++ +G ++ R A + Q MT+ + + A +
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALR 119
Query: 107 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 166
G GS+ + + G+ E D L G
Sbjct: 120 LHGKGSRAEARKRAVELLEQVGLPDPERRD--RYPHQLSG-------------------- 157
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
G ++R+ L ++L DE + LD +T QI+ LK R
Sbjct: 158 --------------GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203
Query: 227 LDGTTVISLLQPAPE-AYELFDDVILLSEGQIVYQGP 262
L G V+ + EL D V+++ +G+IV GP
Sbjct: 204 L-GMAVL-FITHDLGVVAELADRVVVMYKGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 56/288 (19%)
Query: 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 63
L ++ G + L +++ I +++T L+GP GK+TLL +L R+ + ++
Sbjct: 5 ENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NRMNDLVPGVRIE 60
Query: 64 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 123
GK+ ++G + + V E+ R + F S YD I A
Sbjct: 61 GKVLFDGQD------------IYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI---AYG 105
Query: 124 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQ 182
++ GIK ++LD +VE +K L D D L + G+SGGQ
Sbjct: 106 PRLHGIKDKKELD--------------EIVEESLKKAALWDEVKDRL--HDSALGLSGGQ 149
Query: 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPA 239
++RL L VL +DE ++ LD T +I I+ LK T++ +
Sbjct: 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK------YTIVIVTHNM 203
Query: 240 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+A + D +G++V GP + F+ PK K D++
Sbjct: 204 QQAARISDRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 39/168 (23%)
Query: 728 LTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ 780
+TAL+G SG GK+TL+ D++ G K I G + + G ++ +
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDG----EDIYG-------- 74
Query: 781 NDIHSPGLTVLESLLFSAWLRLPSEIE------LETQRAFVEEVMELVELTSLSGALI-- 832
+I L + ++F P I L Q ++V++ V SL GA +
Sbjct: 75 -NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 833 ------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
GLS Q++RL IA + P ++ MDEPTS LD A
Sbjct: 134 EVKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 9e-06
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----- 233
SGG ++R+ L ++L DE + LD + QI+ LK R GT +I
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHD 213
Query: 234 -SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
+ E+ D V ++ G+IV +GP +
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 54/184 (29%)
Query: 728 LTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 784
+TAL+G SG GK+T + L R I+G + + G DI+
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG-----------------QDIY 115
Query: 785 SPGLTVLE-----SLLFSAWLRLPSEI------------ELETQ-------RAFVEEVME 820
G+ ++E ++F + P I ++ T R + E
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 821 LVELTSLSGALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
LVE + AL +N GLS Q++RL IA L +P ++ MDEP S LD
Sbjct: 176 LVERSLRQAALWD--EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 873 RAAA 876
A +
Sbjct: 234 IATS 237
|
Length = 305 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 60/247 (24%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
LD ++ I L+GP +GK+TLL + L SG I NG + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 82 SAYVSQ------QDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
Y+ + QD++ + + V E + FA + GV + E+ +R
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKR----------- 116
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
V ++++GL + +SGG+++R+ +V
Sbjct: 117 ------------------VPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVN 153
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD----VI 250
+L DE + LD TT++I+ LK +A GTTV+ A A EL D VI
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVV----ATHAKELVDTTRHRVI 207
Query: 251 LLSEGQI 257
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 58/246 (23%), Positives = 94/246 (38%), Gaps = 56/246 (22%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--V 77
LD +S I+ LLGP GKTTLL +A G SG+I +G K+ +
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA---GFETPTSGEILLDG---KDITNL 67
Query: 78 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
PP R V Q +TV E + F + + + E+ R
Sbjct: 68 PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA-----EIKER------------ 110
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
V + ++ L+ A + +SGGQ++R+ LV
Sbjct: 111 -----------------VAEALDLVQLEGYA-----NRKPSQLSGGQQQRVAIARALVNE 148
Query: 196 ARVLFMDEISNGLDSS--TTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
+VL +DE LD Q+ +K L+ G T + + EA + D + ++
Sbjct: 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKEL----GITFVFVTHDQEEALTMSDRIAVM 204
Query: 253 SEGQIV 258
++G+I
Sbjct: 205 NKGKIQ 210
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 54/246 (21%), Positives = 94/246 (38%), Gaps = 45/246 (18%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
L ++ + P + LLG +GK+TL+ L+G H G IT N + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI---HEPTKGTITINNINYNKLDHKLA 77
Query: 82 S----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
+ + Q+ + E+TV E L I + K+ G+ D
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL--------------YIGRHLTK-KVCGV-NIIDWR- 120
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
M+ A ++ +GL D V + +S K+ L + L+ A+
Sbjct: 121 EMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAK 165
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEG 255
V+ MDE + SS T + + YL L +GT ++ + E + D ++ +G
Sbjct: 166 VIIMDEPT----SSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
Query: 256 QIVYQG 261
V G
Sbjct: 222 SSVCSG 227
|
Length = 510 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 64/249 (25%), Positives = 91/249 (36%), Gaps = 58/249 (23%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
L LS I T LLGP +GK+TLLL L G +L G++ G +E V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMG---RE-VNAEN 73
Query: 82 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
+V + D QV TV + + F G+ E+ RR + A
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 134 DLDIF-MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 192
L M F D+ +S GQKKR+ +L
Sbjct: 123 -LKAVRMWDFR----------------------------DKPPYHLSYGQKKRVAIAGVL 153
Query: 193 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
V+ +DE LD +++ L G TVI A E D VI+L
Sbjct: 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVL 211
Query: 253 SEGQIVYQG 261
EG+++ +G
Sbjct: 212 KEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 57/258 (22%), Positives = 85/258 (32%), Gaps = 60/258 (23%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 78
T L LSG +R + L+GP +GK+TLL +AG SG I + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSAT 68
Query: 79 --PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
R AY+SQQ M V L + +
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--------------------- 107
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG 194
+ L LD D L +SGG Q+ RL L +
Sbjct: 108 ------------------DVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 195 P-----ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
P ++L +DE N LD + + + L + G ++
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRA 202
Query: 250 ILLSEGQIVYQGPRVSVL 267
LL G+++ G R VL
Sbjct: 203 WLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
++L + + G + A++G +G+GK+TL V+AG I+EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 774 IS------GYCEQNDIHSPGLTVLESLLFS-----AWLRLPSEIELETQRAFVEEVMELV 822
+ + Q I PG++ + L + + LP LE F+E + E +
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE----FLEIINEKL 134
Query: 823 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 882
+L + + + G S ++KR I + + + +DE SGLD A I+ +
Sbjct: 135 KLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 883 RNIVNTGRTIVCTIH 897
++ + +I+ H
Sbjct: 195 NKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L NV RP + AL+G +GAGK+TL+ L G +K G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 774 ISGYCEQNDI---HSPGLTVLE-SLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLS 828
S +N I H VL+ S++ + WL R P T+ FV++ + ++
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 829 GALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
L I+ LS Q + + IA N IV MDEPTS L + +
Sbjct: 120 DEL----DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 881 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELI 933
+R + G IV H+ +IF+ DE+ + R G+ I PL + + I
Sbjct: 176 IIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKI 226
|
Length = 491 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 765
+L NV+ + + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 766 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
+++ F R Q+ I + P TV E + LR ++ + A E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
L L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
Q + +V+ + G A+VG +GAGKTTL+++L ++ G I I G
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDG--------ID 398
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG---- 829
I+ ++ S ++ LF+ +R I L + A EEV E + +
Sbjct: 399 INTVTRESLRKSIATVFQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAHDFILK 456
Query: 830 ------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L+G G N LS +R+RL IA ++ N I+ +DE TS LD A V +
Sbjct: 457 RSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI- 514
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ + RT H+ S + D +LF+ +G
Sbjct: 515 DALRKNRTTFIIAHRLS--TVRNADLVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN-- 781
RPG + ++G +G GK+T + +LAG + + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQNYF 153
Query: 782 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
+H P L + ++ ++ +R +EV+E + L ++
Sbjct: 154 KKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDERGKFDEVVERLGLENVLDR-- 209
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
++ LS + +R+ IA L+ + + F DEP+S LD R R +R + G+ +
Sbjct: 210 ---DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266
Query: 893 VCTIH 897
+ H
Sbjct: 267 IVVEH 271
|
Length = 591 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 37/184 (20%)
Query: 702 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGD 758
+L+ G L ++L N++ + R G + G SG GK+TL+ ++A +G ++
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 759 IYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELET--QRA 813
IS E + + YC Q +P L TV ++L+F P +I +
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQPDPAI 116
Query: 814 FVEEVMELVELTSLSGALIGLP------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867
F++++ LP I LS +++R+++ L P ++ +DE T
Sbjct: 117 FLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 868 SGLD 871
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
LL ++ G L L G +GAGKTTL+ ++AG +G+I +++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 775 SGYC---EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
C ++ I +P LT+ E+ L+ ++ V + EL L SL L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY----------DIHFSPGAV-GITELCRLFSL-EHL 120
Query: 832 IGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
I P G+ LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 121 IDYPCGL--LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 891 TIVCTIHQ 898
++ T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 38/167 (22%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGYPKRQETFARISGYCEQN 781
R G LVG SG+GK+TL G +I +G+I G + + +
Sbjct: 311 RRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--RR 363
Query: 782 DIH----------SPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELVELTSLSGA 830
+ SP +TV + + LR+ +R V E +E V
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEALEEV-------- 413
Query: 831 LIGLPG--INGLSTE----QRKRLTIAVELVANPSIVFMDEPTSGLD 871
GL N E QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 414 --GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 59/289 (20%), Positives = 108/289 (37%), Gaps = 58/289 (20%)
Query: 653 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 712
NV + R Y ++S SL K K +
Sbjct: 7 SNVSKKFRIYHEKSYSLK-KRLKG------------LAKGGRKVAEFWA----------- 42
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE 769
L +++ G ++G +GAGK+TL+ ++A GI + G + ++G
Sbjct: 43 ---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-----GIYKPTSGKVKVTG------ 88
Query: 770 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
+++ E P LT E++ + + E++ V+E++E EL G
Sbjct: 89 ---KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID---EKVDEIIEFAEL----G 138
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
I P + S+ RL +V P I+ +DE + DA + + +V
Sbjct: 139 DFIDQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 938
+TIV H I + D ++++ G++ G E+I +E
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGF---K 74
T+L+D+S I + LLGP SGK+TLL +AG L+ SG I +G +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-----LEEPDSGSILIDGEDLTDLE 68
Query: 75 EFVPP--RTSAYVSQQDWQVAEMTVRETLDFA---GQCQGVG 111
+ +PP R V Q +TV E + GQ Q V
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVA 110
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 52/191 (27%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
+ +L+D++ + +LGP GK+TLL +AG SG++ +G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGP 70
Query: 77 VPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 132
P YV Q+D W +TV + + + +G RE+
Sbjct: 71 GPDI--GYVFQEDALLPW----LTVLDNVALGLELRGKSKA-------EARERA-----K 112
Query: 133 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 192
E L++ GL D +SGG ++R+ L
Sbjct: 113 ELLELV----------------------GLAGFEDKYP-----HQLSGGMRQRVAIARAL 145
Query: 193 VGPARVLFMDE 203
++L +DE
Sbjct: 146 ATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 65/209 (31%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
K IL ++ ++ + ++GP SGK+TL + G + + G+I ++G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDG------- 67
Query: 78 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR---------EKIAG 128
+D + E++ E AR +I G
Sbjct: 68 ----------ED--ILELSP--------------------DERARAGIFLAFQYPVEIPG 95
Query: 129 IKPDEDLDIFMKSFALGGQKTSLV---VEYIMKILGLDTCADTLVGDEMLK-----GISG 180
+ + L M + ++ ++LGLD +E L+ G SG
Sbjct: 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD--------EEFLERYVNEGFSG 147
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLD 209
G+KKR +LL+ ++ +DE +GLD
Sbjct: 148 GEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 52/278 (18%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVP 78
L D+ ++ T L+G SGK+TLL L G L + V + + KE P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 79 PRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
R V Q + Q+ E TV + + F Q G+ + + EKIA K
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE--------KAEKIAAEK------ 127
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
++++GL ++ +SGGQ +R+ +L
Sbjct: 128 --------------------LEMVGLAD----EFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
VL +DE + GLD ++++ + H + G TV+ + + + D V LL +
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQS----GQTVVLVTHLMDDVADYADYVYLLEK 219
Query: 255 GQIVYQGPRVSV---LDFFASMGFSCPKRKNVADFLQE 289
G I+ G V +DF + PK + AD LQ+
Sbjct: 220 GHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 74/328 (22%)
Query: 611 LGYTLLFNALFTFFLSYLNPLGK--------QQAVVSKKELQERDRRRKGENVVIELREY 662
LG + FNAL ++FL PL Q A V+ L E Y
Sbjct: 411 LGQLITFNALLSYFL---TPLENIINLQPKLQAARVANNRLNE---------------VY 452
Query: 663 LQRSSSLNGKYFKQKGMV---LPFQPLSMAFG-NINYFVDVPVELKQEGVLEDRLQLLVN 718
L S +N K + + + +S ++G N D+ + +K
Sbjct: 453 LVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSK---------- 502
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARIS 775
T +VG+SG+GK+TL +L G G+I ++G+ + T +
Sbjct: 503 ----------TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFI 550
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE-----EVMELVELTSLSGA 830
Y Q G ++LE+LL A + S+ E+ E E M L T LS
Sbjct: 551 NYLPQEPYIFSG-SILENLLLGAKENV-SQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TG 889
G + +S Q++R+ +A L+ + ++ +DE TS LD + V N++N
Sbjct: 609 -----GSS-ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQD 659
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGG 917
+TI+ H+ + + + D+++ + G
Sbjct: 660 KTIIFVAHR--LSVAKQSDKIIVLDHGK 685
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 47/234 (20%)
Query: 31 PSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 87
L LLGP +GKTTLL L L ++V+G G +VP R +
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-----HE 59
Query: 88 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 147
W ++V T+ +G+ +G RR +A FA
Sbjct: 60 FAWDFP-ISVAHTV-MSGRTGHIG--------WLRRPCVA-------------DFA---- 92
Query: 148 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 207
V ++ +GL AD VG+ +SGGQ++R+ L VL +DE G
Sbjct: 93 ----AVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTG 143
Query: 208 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
LD T + + A GT ++ +A D V+LL+ G+++ G
Sbjct: 144 LDMPTQELLTELFI--ELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 77/298 (25%)
Query: 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 63
R L +Y G++ L D++ I +++T L+GP GK+TLL L R+ + +V
Sbjct: 11 RDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVE 66
Query: 64 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
G++ +G + V R V Q+ M++ + + + G+
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKP-NPFPMSIYDNVAY-----GL-------- 112
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-- 176
++ GIK E +I S +K +L E V D + K
Sbjct: 113 ------RLHGIKDKELDEIVESSL----KKAALWDE---------------VKDRLHKSA 147
Query: 177 -GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 232
G+SGGQ++RL L VL MDE ++ LD +T +I I LK T V
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-----KYTIV 202
Query: 233 I---SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
I ++ Q A + D G++V GP + F+ PK K D++
Sbjct: 203 IVTHNMQQ----AARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 28/106 (26%)
Query: 178 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 230
+SGGQK+R VG AR VL DE ++ LD TT I+ L+ R L T
Sbjct: 141 LSGGQKQR-------VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLT 193
Query: 231 TVI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFA 271
V+ +++ + D V ++ +G++V +G V + FA
Sbjct: 194 IVLITHEMEVVK------RICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236
G+SGGQK+R+ +L +L DE + GLD +++++ + + + TV +
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVIT 233
Query: 237 QPAPEAYELFDDVILLSEGQIVYQG 261
E+ D+VI++ +G+I+ G
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 51/249 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 77
++ +L I LLGP GKTT+L +AG + SG+I +G V
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-----FETPDSGRIMLDGQDITH-V 81
Query: 78 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
P R V Q MTV E + F + Q + E+ R
Sbjct: 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPR------------ 124
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
V ++++ L+ A +SGGQ++R+ +V
Sbjct: 125 -----------------VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNK 162
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255
+VL +DE + LD Q+ LK R L G T + + EA + D ++++ +G
Sbjct: 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDG 221
Query: 256 QIVYQG-PR 263
+I G PR
Sbjct: 222 RIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 56/232 (24%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY------PK-- 766
+ + G + ++G+SG+GK+TL+ R +IE G+I + G
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 767 ---RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
R++ + + Q+ P TVLE++ F L + + + E +ELV
Sbjct: 101 RELRRKKISMVF----QSFALLPHRTVLENVAFG--LEV-QGVPKAEREERALEALELV- 152
Query: 824 LTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 874
GL G N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 153 ---------GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
Query: 875 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAG 923
++ + +TIV H D+ E+ D + MK GE++ G
Sbjct: 204 QDELLELQAKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 49/266 (18%)
Query: 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 78
L LD++S I ++G SGKTT + L L L +G I + FK+
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWI---FKDEKN 73
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI--------- 129
+ + + + ++ +++T K I E+ RR G+
Sbjct: 74 KKKTKEK---EKVLEKLVIQKT---------RFKKIKKIKEIRRR---VGVVFQFAEYQL 118
Query: 130 -KPDEDLDIFMKSFALGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLK----GISGG 181
+ + DI ++G K +YI +++GLD + L+ +SGG
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLD--------ESYLQRSPFELSGG 169
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241
QK+R+ +L L DE + GLD +I++ + + G T+I +
Sbjct: 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDN 227
Query: 242 AYELFDDVILLSEGQIVYQGPRVSVL 267
E I +G+I+ G +L
Sbjct: 228 VLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 51/228 (22%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE- 769
Q + +V F G A+VG +G+GK+TL+ + + T G + DI I+ K +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 770 -TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------------------LE 809
+ G Q ES LF + EI L
Sbjct: 81 RPVRKRIGMVFQ---------FPESQLFED--TVEREIIFGPKNFKMNLDEVKNYAHRLL 129
Query: 810 TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869
F +VM +SG Q +++ I L NP I+ +DEPT+G
Sbjct: 130 MDLGFSRDVMSQSPF-QMSGG-------------QMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 870 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
LD ++ VMR ++++ + +TI+ H + ++ DE++ MK G
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN- 781
G T++VG +G+GK+T+ ++ G + G+I+ + + F ++ G QN
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SLSGALIG 833
D G V + F + + V E ++ V++ +LSG
Sbjct: 93 DNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNALSGG--- 146
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTI 892
Q++R+ IA L NPS++ +DE TS LD A ++ VR + TI
Sbjct: 147 ----------QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196
Query: 893 VCTIHQPSIDIFESF--DELLFMKRG 916
+ H D+ E+ D ++ M +G
Sbjct: 197 ISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISGY----- 764
Q L ++T G L+G SGAGK++L+ VL ++E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 765 ----PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
K R G Q P LTV ++L+ A R+ + L +A + +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRV---LGLSKDQA-LARAEK 124
Query: 821 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 880
L+E L P LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 125 LLERLRLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 881 TVRNIVNTGRTIVCTIHQ 898
+R + TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-05
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 41/138 (29%)
Query: 178 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 230
+SGGQK+R V AR VL DE ++ LD +TT I++ LK R L G
Sbjct: 141 LSGGQKQR-------VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GL 192
Query: 231 T---------VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRK 281
T V+ + D V ++ G++V QG V + F+ PK
Sbjct: 193 TIVLITHEMDVVK---------RICDRVAVIDAGRLVEQGT---VSEVFSH-----PKHP 235
Query: 282 NVADFLQEVTSKKDQEQY 299
+F+Q E Y
Sbjct: 236 LTREFIQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 62/198 (31%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
Q L +++ +TA +G SG GK+TL+ D++ + IEG+I + G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDG--- 91
Query: 767 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQ---- 811
+I+ + V E ++F P I L Q
Sbjct: 92 --------------QNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 812 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 860
R ++E +E SL GA + GLS Q++RL IA + P +
Sbjct: 138 RRVLDEAVE----RSLRGAALWDEVKDRLHENAF----GLSGGQQQRLVIARAIAIEPEV 189
Query: 861 VFMDEPTSGLDARAAAIV 878
+ +DEPTS LD + +
Sbjct: 190 LLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 53/248 (21%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L +L+ I+P ++GP SGK+TL L RL + G++ +G P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRL--YTPQHGQVLVDGVDLAIADP-- 526
Query: 81 TSAYVSQQDWQVAEMTV--RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
W +M V +E + F+ R+ IA P +
Sbjct: 527 --------AWLRRQMGVVLQENVLFSRSI---------------RDNIALCNPGAPFEHV 563
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+ + L G I L +T VG E +SGGQ++R+ LVG R+
Sbjct: 564 IHAAKLAGAHDF--------ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 253
L DE ++ LD + I++ ++ R G TVI + A+ L D +I+L
Sbjct: 615 LIFDEATSALDYESEALIMRNMREICR---GRTVIII------AHRLSTVRACDRIIVLE 665
Query: 254 EGQIVYQG 261
+GQI G
Sbjct: 666 KGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 50/212 (23%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT---LLLALAGRLGHHLQVSGK-IT 67
Y R +L D+S + P +T L+GP SGK+T LL G + + GK I+
Sbjct: 21 YP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79
Query: 68 YNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK-YDMITELARREKI 126
H + + V Q+ + ++++ + + G+ S ++ + E A++
Sbjct: 80 QYEHKYLH----SKVSLVGQEP-VLFARSLQDNIAY-----GLQSCSFECVKEAAQKAHA 129
Query: 127 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKK 184
F+ A G DT VG+ KG +SGGQK+
Sbjct: 130 HS---------FISELASG--------------------YDTEVGE---KGSQLSGGQKQ 157
Query: 185 RLTTGELLVGPARVLFMDEISNGLDSSTTYQI 216
R+ L+ +VL +DE ++ LD+ + Q+
Sbjct: 158 RVAIARALIRNPQVLILDEATSALDAESEQQV 189
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 46/229 (20%)
Query: 35 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQV 92
T ++GP SGK+TLL +AG SG++ NG PP R + + Q++
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVT-AAPPADRPVSMLFQENNLF 82
Query: 93 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLV 152
A +TV + + G+ + E R+ I L K
Sbjct: 83 AHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP--------- 126
Query: 153 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 212
L SGG+++R+ +LV VL +DE LD +
Sbjct: 127 --------------GEL---------SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 213 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
+++ L A TV+ + +A L V+ L G+I QG
Sbjct: 164 RAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQK+R+ +L ++ DE ++ LD +I K + R T+IS+
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITH 201
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQEVTSKK 294
EA L D VI+ SEG+++ QG +L + P ++ L+ +
Sbjct: 202 DMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTY 260
Query: 295 DQEQ 298
++E+
Sbjct: 261 NEEE 264
|
Length = 271 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGR------KTGGIIEGDIYISGY--PKRQETFARIS 775
R G + LVG +G GK+T + +LAG+ K + D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ---RAFVEEVMELVELTSLSGALI 832
+ I P L EL + R ++E+++ +EL +
Sbjct: 84 EG-DVKVIVKPQYVDLIPKAVKG-----KVGELLKKKDERGKLDELVDQLELRHVLDR-- 135
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
I+ LS + +R+ IA L + F DEP+S LD + R +R + +
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 893 VCTIHQPSI 901
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 50/247 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
T+ L+ + + L+GP +GKT+LL AL G L + G + NG +E P
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ----GSLKINGIELRELDPE 419
Query: 80 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
+ ++V Q + Q+ T+R+ + D DE L
Sbjct: 420 SWRKHLSWVGQ-NPQLPHGTLRDNVLLG--------NPDA--------------SDEQLQ 456
Query: 137 -IFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
++ E++ + GLDT +GD+ G+S GQ +RL L+
Sbjct: 457 QALENAWVS---------EFLPLLPQGLDT----PIGDQAA-GLSVGQAQRLALARALLQ 502
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
P ++L +DE + LD+ + +++ L ++R T + ++ E +D + ++ +
Sbjct: 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTL-MVTHQLEDLAQWDQIWVMQD 558
Query: 255 GQIVYQG 261
GQIV QG
Sbjct: 559 GQIVQQG 565
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-05
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 18/115 (15%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
DT VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T I L+ +
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA- 447
Query: 227 LDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGPRVSVLD---FFASM 273
TT++ A+ L D++I+L G+IV +G +L +A M
Sbjct: 448 -GRTTLVI-------AHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++R+ L+ +L +DE ++ LD T I++ L+ G TVI ++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR---ALAKGKTVI-VIA 152
Query: 238 PAPEAYELFDDVILLSEGQ 256
D +I+L +G+
Sbjct: 153 HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 29 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAY 84
++ + L+GP GKTT L A+ R+ H L +V+G+I +G ++ PR
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAI-NRM-HDLTPGARVTGRILLDG---QDIYGPR---- 77
Query: 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 144
V + +R + Q + + K+AGI+ D D M+
Sbjct: 78 -------VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR---DRDHLME---- 123
Query: 145 GGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 203
V E ++ L D D L G+SGGQ++RL L +L MDE
Sbjct: 124 -------VAERSLRGAALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDE 174
Query: 204 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 262
++ LD ++T +I + + TT+I + +A + D G +V GP
Sbjct: 175 PTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230
|
Length = 252 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 144 LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 203
L G+K ++ VEY + I+GL+ T +K +SGG+ +R++ L VL +DE
Sbjct: 103 LKGEK-NVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 204 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPR 263
++ LD ++T +II+ L + TVI + +A + D L++G +V
Sbjct: 158 PTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA-- 214
Query: 264 VSVLDFF 270
DFF
Sbjct: 215 -KTYDFF 220
|
Length = 241 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 706 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISG 763
E +L L +N G L + G +GAGKT+L+ +LAG R G++ G
Sbjct: 13 ERILFSGLSFTLN------AGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQG 62
Query: 764 YPKRQ--ETFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQRAFVEE 817
P R+ + + + Y H PG LT LE+L F L P + E A
Sbjct: 63 EPIRRQRDEYHQDLLYLG----HQPGIKTELTALENLRFYQRLHGPGDDE-ALWEAL--- 114
Query: 818 VMELVELTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
A +GL G + LS Q++R+ +A + + +DEP + +D
Sbjct: 115 ------------AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
Query: 873 RAAAIVMRTVRNIVNTGRTIVCTIHQP 899
+ A + + G ++ T HQ
Sbjct: 163 QGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 840 LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +++ G T++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 898 QPSIDIFESFDELLFM-----KRGGELIYAG 923
D+ S D ++ K GG+++++G
Sbjct: 148 NL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 5e-05
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
E + L V+ + G +++G +G+GK+T ++ G EG + I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAE 74
Query: 770 T---FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
R G QN D G TV + + F +E Q EE+++ V+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----------MENQGIPREEMIKRVDEA 124
Query: 826 SLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L+ ++ LS Q++R+ +A + P I+ +DE TS LD +MR +
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920
I + V +I +D S D +L M + GE+I
Sbjct: 185 EIKEKYQLTVLSITH-DLDEAASSDRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS 775
V+ R G A++G +G+GK+TL +LAG +IE G+I I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGEILINDHPLHFGDYSFRS 86
Query: 776 G-----YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ + N +P L + + LRL +++E E +R + E + +V L
Sbjct: 87 KRIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------ 138
Query: 831 LIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
LP + L+ Q++R+ +A L+ P I+ DE + LD
Sbjct: 139 ---LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 50/219 (22%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----KE 75
L D+S IR L GP +GKTTLL L G L G++ G ++
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRLRGRQ 73
Query: 76 FVPPRTSAYVSQQDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
R V QD++ + + TV E + + +G E+ RR
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE-----REIQRR----------- 117
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
V ++ +GL+ AD +SGG+++R+ +V
Sbjct: 118 ------------------VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVN 154
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
+L DE + LD + +I+ LK + GTTVI
Sbjct: 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 42/220 (19%)
Query: 696 FVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTG 752
++ + L L RPG + G SGAGKT+L+ LAG +G
Sbjct: 395 LENLSLRTPDGQTLLSELNF------EVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 753 GII----EGDIYISGYPK-RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 807
I +++ P Q T Y S
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD--------------------- 487
Query: 808 LETQRAFVEEVMELVELTSLSGALIGL-PGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866
A + V+ V L L+ L LS +++RL A L+ P VF+DE
Sbjct: 488 -----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542
Query: 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 906
TS LD + + ++ + T++ H+P++ F S
Sbjct: 543 TSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 63/268 (23%), Positives = 102/268 (38%), Gaps = 79/268 (29%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG--------- 763
L NV G L+G +G+GK+TL+ L G +G II + I+
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 764 --------YPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 812
YP+ Q ET + + N GL SE E+E +
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN----LGL---------------SEEEIENR- 122
Query: 813 AFVEEVMELVELT----------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862
V+ M +V L LSG Q++R+ IA + P I+
Sbjct: 123 --VKRAMNIVGLDYEDYKDKSPFELSGG-------------QKRRVAIAGVVAMEPKILI 167
Query: 863 MDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 921
+DEPT+GLD + ++ ++ + TI+ H D+ + D ++ M + G+
Sbjct: 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCEL 225
Query: 922 AGPLGSKSCELIKYFEAVE----GVPKI 945
G E+ K E +E VP++
Sbjct: 226 QGT----PREVFKEVETLESIGLAVPQV 249
|
Length = 287 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 771
+ Q+L N+ F +TA++G SG GK+TL+ L + I+ G
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG-------------- 59
Query: 772 ARISG--YCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELETQRAFVEEVM----- 819
AR+ G + +I+SP L V+ ++F P I AF ++
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF--DNVAFGPRMLGTTAQ 117
Query: 820 ----ELVELTSLSGALIGLPGIN------GLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869
E+VE + AL N LS Q++RL IA L P ++ MDEP S
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 870 LD 871
LD
Sbjct: 178 LD 179
|
Length = 251 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
K T ++++S + + + LLGP +GK+TLL + G L SG+I ++GH
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGH------ 62
Query: 78 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
W R+ L +GS +I E + E+L +
Sbjct: 63 -----------PWT------RKDL------HKIGS---LIESPPLYENLTA---RENLKV 93
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
L G S + E ++ I+ L T G + K S G K+RL L+ +
Sbjct: 94 HTT---LLGLPDSRIDE-VLNIVDL-----TNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257
+L +DE +NGLD ++ + ++ G TVI E +L D + ++SEG +
Sbjct: 145 LLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVL 202
Query: 258 VYQG 261
YQG
Sbjct: 203 GYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-05
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 44/178 (24%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYPKRQETF 771
+ N++ RPG LVG SG+GK+T L+ ++ + G+I+ G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 772 ARISGYCEQ--------NDIHSPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELV 822
++ + N +P L VL+ + LR+ QR V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 823 EL---------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
L SG QR+R+ IA L+ PS++ +DEPTS LD
Sbjct: 413 GLDPETRHRYPAEFSGG-------------QRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IEGDIYISGYPKRQE 769
Q L NV+ +TAL+G SG GK+T + L R I IEG + I
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NRMNDLIKNCRIEGKVSI-------- 76
Query: 770 TFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQRAFVEEV 818
E DI+ P + V+E ++F P I A +++
Sbjct: 77 ---------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 819 MELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+VE S AL + P ++ LS Q++RL IA L P I+ DEPTS LD
Sbjct: 128 DGVVENALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 872 ARAAAIVMRTVRNIVNTGRTIVCTIH 897
+ A + + N+ TIV H
Sbjct: 187 PISTARIEDLIMNL-KKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 51/260 (19%)
Query: 34 LTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 90
LT L+GP GK+T L L R+ +++++G+I + G Y S+ D
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGSKMDL 80
Query: 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 150
+ +R+ + Q Q + + +A KIAG+K E +D
Sbjct: 81 ----VELRKEVGMVFQ-QPTPFPFSVYDNVAYGLKIAGVKDKELID-------------Q 122
Query: 151 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD- 209
V E + + D L D + SGGQ++R+ L +V+ +DE ++ LD
Sbjct: 123 RVEESLKQAAIWKETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 210 --SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
SS + + LKH T I + +A + D L G ++ GP +
Sbjct: 181 ISSSEIEETLMELKHQ------YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM- 233
Query: 268 DFFASMGFSCPKRKNVADFL 287
F PK++ +D+L
Sbjct: 234 -------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 47/240 (19%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
L+D+S I L ++LGP GKTTLL +AG + G I NG + P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
V Q + + + V + + F Q + GI+ + +I +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQ-------------------LRGIEKAQRREIAHQ 115
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
AL +GL + + +SGG ++R+ L ++L
Sbjct: 116 MLAL---------------VGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 201 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQIV 258
+DE LD+ T Q+ + L + G V+ + EA L +++LS G++V
Sbjct: 156 LDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 51/241 (21%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE--FVPP 79
LD++S + R+ LGP +GK+T + + G L SG + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQ 74
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
R Y+ + + +M VRE L F G+ + ++++ +
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-------LLKQRVEEMI--------- 118
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 199
+ L E KI +S G ++R+ + L+ +VL
Sbjct: 119 -------ELVGLRPEQHKKI----------------GQLSKGYRQRVGLAQALIHDPKVL 155
Query: 200 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEGQI 257
+DE + GLD + +I +K+ D T ++S ++Q E + D VI++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNI--GKDKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 258 V 258
V
Sbjct: 211 V 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 61/270 (22%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
T L D+S ++ LLGP GKTTLL +AG Q +G I G +PP
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDIT-RLPP 73
Query: 80 RTSAY--VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
+ Y V Q +TV + + + + +G+G E+A R
Sbjct: 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-----EVAER-------------- 114
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 197
V ++ ++GL G +SGGQ++R+ L
Sbjct: 115 ---------------VAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPG 154
Query: 198 VLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVILLSE 254
+L +DE + LD+ ++ ++L+ R L G T I + EA + D +++++
Sbjct: 155 LLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210
Query: 255 GQI--------VYQGPRVS-VLDFFASMGF 275
G I +Y+ P V DF + +
Sbjct: 211 GVIEQVGTPQEIYRHPATPFVADFVGEVNW 240
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
L+D++ + L ++LGP GKTTLL +AG + + G IT +G + P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
V Q + + V++ + F Q GV +R +IA
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIAH------------ 110
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
++K +GL+ + +SGGQ++R+ L ++L
Sbjct: 111 --------------QMLKKVGLEG-----AEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 201 MDEISNGLDSSTTYQIIKYLK---HSTRALDGTTVISLLQPAPEAYELFDDVILLS--EG 255
+DE LD+ T Q+ L T G V+ + EA + +++LLS G
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQET----GKQVLLITHDIEEAVFMATELVLLSPGPG 207
Query: 256 QIV 258
++V
Sbjct: 208 RVV 210
|
Length = 255 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 63/258 (24%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 75
R LD L+ +RP L+GP +GK+TL L L + SG+I +G ++
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILLDGVDLRQ 406
Query: 76 FVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
P R + QD + +V E + + G D E A R A
Sbjct: 407 LDPAELRARMALVPQDPVLFAASVMENIRY-----GRPDATDEEVEAAARAAHA------ 455
Query: 134 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 193
F I L DT +G E +SGGQ++R+ ++
Sbjct: 456 --HEF--------------------ISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAIL 492
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG-----TTVI-----SLLQPAPEAY 243
A +L +DE ++ LD+ + Q+++ +AL+ TT+I + + A
Sbjct: 493 KDAPILLLDEATSALDAESE-QLVQ------QALETLMKGRTTLIIAHRLATVLKA---- 541
Query: 244 ELFDDVILLSEGQIVYQG 261
D ++++ +G+IV QG
Sbjct: 542 ---DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
LL +V+ + G LT ++G +G+GK+TL+ L + I EG ++ + + A +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWA------ERSIAYV 726
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGAL-- 831
+Q I + TV ++LF + E + A V +L +L L G L
Sbjct: 727 P---QQAWIMNA--TVRGNILFF-------DEEDAARLADAVRVSQLEADLAQLGGGLET 774
Query: 832 -IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
IG G+N LS Q+ R+++A + AN + +D+P S LDA V+ G+
Sbjct: 775 EIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 891 TIVCTIHQ 898
T V HQ
Sbjct: 834 TRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 49/236 (20%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 770
Q L N+ +TAL+G SG GK+T + + + G EG+I + +P
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HP----- 82
Query: 771 FARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------QRAFV 815
+ +I SP + +E S++F P I +R+ +
Sbjct: 83 --------DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 816 EEVMELVELTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867
EE +E +L A + G N LS Q++RL IA L +P I+ DEPT
Sbjct: 135 EERVE----NALRNAALWDEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPT 189
Query: 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
S LD A A + + ++ N ++ T + + ++M GELI G
Sbjct: 190 SALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM---GELIEFG 242
|
Length = 265 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 1e-04
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 785
G L A+VG G GK++L+ L +EG +++ G A I QND
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI-----QND--- 713
Query: 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA---LIGLPGINGLST 842
++ E++LF L + +E L +L L IG G+N LS
Sbjct: 714 ---SLRENILFGKALNEKY------YQQVLEACALLPDLEILPSGDRTEIGEKGVN-LSG 763
Query: 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
Q++R+++A + +N I D+P S +DA
Sbjct: 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++ L L VL +DE ++ LD +TT +I ++++ D TVI +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---DRLTVIIVTH 220
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+A + D L +G++V +GP + FS PK A ++
Sbjct: 221 NLAQAARISDRAALFFDGRLVEEGPTEQL--------FSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 1e-04
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 23/241 (9%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGIIEGDIYISGYPK 766
+L V+ F +T+L+G +G+GKTT + D ++G R +G ++ G I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-T 825
E F R G Q P +++++++L A +R + + R + + V L
Sbjct: 96 VLE-FRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R++
Sbjct: 152 AVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL-----GSKSCELIKYFEAVE 940
+ I+ T + L F G L+ GP K E +Y +
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFF---DGRLVEEGPTEQLFSSPKHAETARYVAGLS 266
Query: 941 G 941
G
Sbjct: 267 G 267
|
Length = 276 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 54/246 (21%), Positives = 99/246 (40%), Gaps = 53/246 (21%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL----GHHLQVSGKITYNGHGFKEF 76
+L D++ I P + +L GP SGKTTLL L G L L+V G+ G KE
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQ-ELYGASEKEL 77
Query: 77 VPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
V R + Y+ Q + +T R Q V ++ L+ +E
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE-------- 120
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK---GISGGQKKRLTTGELL 192
+++ +GL GD + +SGGQK+R+ L
Sbjct: 121 ----------------RARAMLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARAL 156
Query: 193 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
V +++ DE + LDS + +++ ++ A + I ++ ++ D ++ +
Sbjct: 157 VHRPKLVLADEPTAALDSKSGRDVVELMQ--KLAREQGCTILIVTHDNRILDVADRIVHM 214
Query: 253 SEGQIV 258
+G+++
Sbjct: 215 EDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 59/251 (23%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTL--LLALAGRLGHHLQVSGKITYNGHGFKEFVP 78
++++ S ++P + L+G SGK+T+ L+A G + SG+I ++G +E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA-----GLYQPWSGEILFDGIPREEIPR 548
Query: 79 PRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
+ V+ QD + E TVR+ L + +D PD DL
Sbjct: 549 EVLANSVAMVDQDIFLFEGTVRDNL----------TLWD------------PTIPDADLV 586
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
K A+ TS Y D + E +SGGQ++RL LV
Sbjct: 587 RACKDAAIHDVITSRPGGY-----------DAELA-EGGANLSGGQRQRLEIARALVRNP 634
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVIL 251
+L +DE ++ LD T I L+ G T I + A+ L D++I+
Sbjct: 635 SILILDEATSALDPETEKIIDDNLRRR-----GCTCIIV------AHRLSTIRDCDEIIV 683
Query: 252 LSEGQIVYQGP 262
L G++V +G
Sbjct: 684 LERGKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
DT + + + + SGG+++RL +L+ A ++ +DE + GLD T Q++ +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI---FEV 144
Query: 227 LDGTTVISL---LQPAPEAYELFDDVILLSEGQIVYQG 261
L T+I + L E D ++ L G+I+ QG
Sbjct: 145 LKDKTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 26/220 (11%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGD------IYISGYPKRQE 769
L +++ + G TAL+G +G+GK+T+ + G++ D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 770 TFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
T I G QN D G TV + + F R E+ V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK---IVRDVLADVGML 134
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
+ P LS Q++R+ IA L P I+ +DE TS LD +++ +R +
Sbjct: 135 DYIDSE---PA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 886 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
T++ H ID D++L + G L P
Sbjct: 190 KKKNNLTVISITH--DIDEANMADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 898
LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N+ N R + H+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 899 PS 900
S
Sbjct: 640 LS 641
|
Length = 1466 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 27/213 (12%)
Query: 727 VLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQETFARIS-----GYC 778
+ AL+G SG GK+TL+ + L +EG++ + G I G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 779 EQNDIHSPGLTVLESLLFSAWLR--LPSEIELETQRAFVEEVMELVEL-TSLSGALIGLP 835
Q P LT+ +++ L + S+ EL+ + VE ++ L + L P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER---VEWALKKAALWDEVKDRLNDYP 147
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
LS QR+RL IA L P I+ MDEPT+ +D A + + + TIV
Sbjct: 148 S--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLV 204
Query: 896 IHQPS----IDIFESFDELLFMKRGGELIYAGP 924
H P+ + + +F L++ G+LI GP
Sbjct: 205 THSPAQAARVSDYVAF---LYL---GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 29/224 (12%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTGGII---EGDIY-IS 762
+L ++T + ++G SG+GK+TL+ VL + K G + DI+ I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 763 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLF---SAWLRLPSEIELETQRAFVEEVM 819
R+E G Q P L++ +++ + S ++ EI + VEE +
Sbjct: 85 AIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI-----KKIVEECL 134
Query: 820 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 880 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923
+ + + N IV H P + D + F+ GEL+ G
Sbjct: 194 KLITELKNE-IAIVIVSHNPQ-QVARVADYVAFL-YNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-04
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 36/180 (20%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
+ +L ++ + G AL+G +G GK+TL+ +L + +G+I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGEILLNGQP---- 403
Query: 770 TFARISGYCEQNDIHSPGLTVLESL--LFSAWLR------LPSEIELETQRAFVEEVMEL 821
I+ Y E + ++V+ LFSA LR P+ + + EV++
Sbjct: 404 ----IADYSEAALRQA--ISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQ 452
Query: 822 VELTSLSGALIGLPGING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
V L L L G+N LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 453 VGLEKL---LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 44/199 (22%)
Query: 701 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IE 756
+E + V Q L +V+ +TA++G SG GK+T + + R I +E
Sbjct: 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCI-NRMNDLIDAARVE 98
Query: 757 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI--------EL 808
G++ G + + D+ L ++F P I ++
Sbjct: 99 GELTFRG----KNVY--------DADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI 146
Query: 809 ETQRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVAN 857
+ ++E +E SL A + GL LS Q++RL IA + +
Sbjct: 147 QGYDGDIDERVE----ESLRRAALWDEVKDQLDSSGL----DLSGGQQQRLCIARAIAPD 198
Query: 858 PSIVFMDEPTSGLDARAAA 876
P ++ MDEP S LD A +
Sbjct: 199 PEVILMDEPASALDPVATS 217
|
Length = 285 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGY----CE 779
G + AL+G +GAGK+TLM ++AG G + I G P + T A+
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAHQLGIYLVP 92
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL---VELTSLSGALIGLPG 836
Q + P L+V E++LF LP + + + + L ++L S +G+
Sbjct: 93 QEPLLFPNLSVKENILF----GLPK--RQASMQKMKQLLAALGCQLDLDSSAGS------ 140
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
L R+ + I L+ + I+ +DEPT+ L + +R ++ G IV
Sbjct: 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197
Query: 897 HQ 898
H+
Sbjct: 198 HK 199
|
Length = 510 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 728 LTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI- 783
+TA +G SG GK+T + + L G EG+IY G R + + + +
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 836
P T E +F P + R +E++ VE + S AL + G
Sbjct: 170 QKP--TPFEMSIFDNVAYGPRNNGI-NDRKILEKI---VEKSLKSAALWDEVKDDLDKAG 223
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
N LS Q++RL IA + P ++ MDEPTS LD A A + + + I+ T
Sbjct: 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 44/284 (15%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+R + NR+K +L DL+ I+ +++T +GP GK+T L L Q++
Sbjct: 83 IRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-------QLNDL 134
Query: 66 ITYNGH-GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 124
I H G F+ T + + E+ R + F S +D + R
Sbjct: 135 IEGTSHEGEIYFLGTNTRS----KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 125 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQK 183
I D I K +VE +K L D D L D+ +SGGQ+
Sbjct: 191 GI------NDRKILEK-----------IVEKSLKSAALWDEVKDDL--DKAGNALSGGQQ 231
Query: 184 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243
+RL + VL MDE ++ LD T +I + + + ++I + +A
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY---SIIIVTHSMAQAQ 288
Query: 244 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+ D+ + +G I G ++ F PK K D++
Sbjct: 289 RISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 17/207 (8%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L N+ G ALVG SG+GK+T+ ++L + I EG+I + G+ R T A +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 776 GYC---EQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGAL 831
QN +H T+ ++ ++ + +IE + A+ M+ + + L
Sbjct: 417 NQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYA---MDFIN--KMDNGL 470
Query: 832 IGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKN 529
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRG 916
RT + H+ S E DE+L ++ G
Sbjct: 530 RTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-04
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQETFARISG--YCE 779
R G + + G+ GAG+T L L G + G+I + G R A +G Y
Sbjct: 283 RAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340
Query: 780 QNDIHS----PGLTVLESLLFSAWLRLPSE--IELETQRAFVEEVMELVEL-TSLSGALI 832
D S +++ E++ ++ R I+ +RA E + + + T I
Sbjct: 341 -EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399
Query: 833 G-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
G L G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + G+
Sbjct: 400 GTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 892 IV 893
I+
Sbjct: 454 IL 455
|
Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 42/200 (21%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 69
++Y G S +D L +RP LLG +GKTT L G
Sbjct: 1945 KVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--------------- 1987
Query: 70 GHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
V+ D VA ++ + Q G ++D I +L +
Sbjct: 1988 ------------DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDL--------L 2027
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
E L ++ + + ++ V + ++ LGL AD L G SGG K++L+T
Sbjct: 2028 TGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTA 2082
Query: 190 ELLVGPARVLFMDEISNGLD 209
L+G ++ +DE + G+D
Sbjct: 2083 IALIGCPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
ILDDL+ I ++ ++G SGK+TLL + SG++ NG + PP
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNG----QETPP 64
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
S S+ RE L + Q + +I E + +E+LD+ +
Sbjct: 65 LNSKKASK--------FRREKLGYLFQ------NFALIEN----ETV-----EENLDLGL 101
Query: 140 KSFAL-GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
K L +K E + K +GL+ + + +SGG+++R+ ++ P +
Sbjct: 102 KYKKLSKKEKREKKKEALEK-VGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPL 155
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
+ DE + LD +++ L G T+I ++ PE + D VI L
Sbjct: 156 ILADEPTGSLDPKNRDEVLDLLLELNDE--GKTII-IVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+S GQKKR+ LV AR L +DE + GLD + Q+I ++ G VI
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI--VAQGNHVIISSH 194
Query: 238 PAPEAYELFDDVILLSEGQIVYQG 261
YE+ D V +L +GQI+ G
Sbjct: 195 DIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 52/258 (20%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
K L +S ++ ++GP SGK+TL + +G SG + +G K++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLKQW 385
Query: 77 VPP---RTSAYVSQQ----DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
+ Y+ Q VAE R + + I E A K+AG+
Sbjct: 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE---------KIIEAA---KLAGV 433
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
+L IL L DT++G +SGGQ++R+
Sbjct: 434 ---HEL-----------------------ILRLPDGYDTVIGPGG-ATLSGGQRQRIALA 466
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
L G +++ +DE ++ LD + +K +A T V+ +P+ D +
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKI 523
Query: 250 ILLSEGQIVYQGPRVSVL 267
++L +G+I G R VL
Sbjct: 524 LVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 1 MTEALLR----QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56
MTE++ R QL + G T+ ++L+ I T ++GP GK+TLL L+ RL
Sbjct: 1 MTESVARLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RL 56
Query: 57 GHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 113
G + +G + + R ++Q ++TV+E + +G
Sbjct: 57 --MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV-----ARGRYPH 109
Query: 114 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 173
+ T R+E DE+ V M+ G+ T + D+
Sbjct: 110 QPLFTRW-RKE-------DEE-----------------AVTKAMQATGI-----THLADQ 139
Query: 174 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
+ +SGGQ++R +L ++ +DE + LD S +++ L R G T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLA 198
Query: 234 SLLQPAPEAYELFDDVILLSEGQIVYQG 261
++L +A +I L EG+IV QG
Sbjct: 199 AVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 898
LS Q++R+ +A L P + DEPT+GLD + ++ N+ G+TI+ H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH- 223
Query: 899 PSID-IFESFDELLFMKRGGELIYAG 923
+D + E +F K G++I G
Sbjct: 224 -DLDNVLEWTKRTIFFKD-GKIIKDG 247
|
Length = 305 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQ 898
LS +++RL A L+ P VF+DE TS LD + + + ++ V ++ H+
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ----LLKELGITVISVGHR 147
Query: 899 PSIDIFESFDELLFMKRGG 917
PS+ F D +L + G
Sbjct: 148 PSLWKF--HDRVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI--IEGDIYISGYP-KRQET 770
Q L ++ +TAL+G SG GK+T + R I I+G + I G K Q+
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCF-NRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 771 FA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-LETQRAFVEEVMELVELTS 826
A + +Q ++ ++ E++ ++ +L I+ + + A V + ++ V L
Sbjct: 75 VALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
+ + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++ +
Sbjct: 131 EVKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 887 NTGRTIVCT 895
+ I+ T
Sbjct: 190 HNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 172 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231
D++ + SGG ++RL LV R++FMDE + GLD S +++ L+ R L G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204
Query: 232 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
V+ + A L D ++++ +GQ+V G VLD
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M + +R L++ G + +LD ++ I + +T L+GP SGK+TLL RL
Sbjct: 1 MNKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRL---- 52
Query: 61 QVSGKITYNGHGFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
+ + R S Y+ QD + +M V E + Q V + I
Sbjct: 53 ------------IELYPEARVSGEVYLDGQD--IFKMDVIE---LRRRVQMVFQIPNPIP 95
Query: 119 ELARREKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177
L+ E +A G+K L+ +KS ++ +E K D D L D
Sbjct: 96 NLSIFENVALGLK----LNRLVKSKKELQERVRWALE---KAQLWDEVKDRL--DAPAGK 146
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ++RL L VL DE + LD T +I + + T++ +
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM---TIVLVTH 203
Query: 238 PAPEAYELFDDVILLSEGQIVYQGP 262
+A + D V L +GQIV GP
Sbjct: 204 FPQQAARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG----YCE 779
RPG + A++G +G+GK+TL LAGR+ + G + G + + +G
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 780 QNDIHSPGLT---VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
Q + PG++ L++ L + +R E + F + + E + L + L+
Sbjct: 85 QYPVEIPGVSNQFFLQTALNA--VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 896
G S ++KR I V P + +DE SGLD A IV V ++ + R+ +
Sbjct: 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVT 202
Query: 897 HQPSI 901
H I
Sbjct: 203 HYQRI 207
|
Length = 248 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 723 FRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG---YPKRQET--FARI 774
F +TAL+G SG GK+T + L G I G++ + G Y ++ +
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLR-------LPSEIELETQRAFV-EEVMELVELTS 826
G Q P ++ E++++ L L +E ++A + +EV + + ++
Sbjct: 88 VGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
LS LS Q++R+ IA L P ++ +DEPTS LD
Sbjct: 147 LS-----------LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 728 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC--EQNDIHS 785
+TAL+G SG GK+T + L + ++EG +I G E +I+S
Sbjct: 35 ITALIGPSGCGKSTFLRTL--NRMNDLVEG--------------IKIEGNVIYEGKNIYS 78
Query: 786 PGLTVLE-------------SLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSG 829
+LE L S + + P + ++ E V + ++ ++L
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN 138
Query: 830 ALIGLPGINGLSTE--QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
+ N LS Q++RL IA L P+++ MDEPTS LD + + + N+
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 888 TGRTIVCT 895
+ I+ T
Sbjct: 199 SYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFARISGYCE 779
PG + ALVG +GAGK+T+M VL G + G I ++ +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 780 QNDIHS-----PGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
IH P LT+ E++ + + R I+ + A ++++ + L S
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSD 136
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 889
L+G LS +++ + IA L ++ MDEPT L + R +R + + G
Sbjct: 137 KLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 890 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 920
R IV H+ +IFE D++ R G+ I
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--------YPKRQE 769
+++ + G + G+ G+G+T LM+ L G G+I ++G ++
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 770 TFARIS------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
A I+ G+ I + + + SL + ++ E EL+
Sbjct: 339 GMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L S I LS ++++ I+ L P ++ DEPT G+D A A + + +R
Sbjct: 398 LKCHSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 884 NIVNTGRTIV 893
+ + G+ I+
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 51/291 (17%)
Query: 2 TEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL- 60
+ L QL ++ G + D+S + +T ++GP GK+T+L ++ R+ H L
Sbjct: 3 NKVKLEQLNVHFGKNHAVK---DVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRM-HDLV 57
Query: 61 ---QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 117
+V+GKI + T Y D V +++R + Q +
Sbjct: 58 PSARVTGKILLDD----------TDIY----DRGVDPVSIRRRVGMVFQKPNPFPAMSIY 103
Query: 118 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLK 176
+ K+ G + D +VE +K + L D D L + M
Sbjct: 104 DNVIAGYKLNGRVNRSEAD--------------EIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236
+SGGQ++RL + V+ MDE ++ LD +T +I + ++ + T+I +
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK---EKYTIIIVT 204
Query: 237 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+A + D G +V G + F+ P++K D++
Sbjct: 205 HNMQQAARVSDYTAFFYMGDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 49/190 (25%), Positives = 69/190 (36%), Gaps = 56/190 (29%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISG-- 763
E ++ L V+ G A+VG SG GK+TL +L +IE G++Y G
Sbjct: 25 ERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT------MIETPTGGELYYQGQD 78
Query: 764 ---YPKRQETFARI-------SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 813
+ R + Y N G + E LL + L S E +R
Sbjct: 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL---SAAE---RRE 132
Query: 814 FVEEVMELVELTSLSGALIGLPGINGLSTE------------QRKRLTIAVELVANPSIV 861
+M V GL E QR+R+ IA L+ +P +V
Sbjct: 133 KALAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV 176
Query: 862 FMDEPTSGLD 871
DEP S LD
Sbjct: 177 VADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-04
Identities = 61/242 (25%), Positives = 94/242 (38%), Gaps = 55/242 (22%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
L D++ I L ++G GKT+L+ A+ G L H S I +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR------------GS 680
Query: 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK-IAGIKPDEDLDIFMK 140
AYV Q W + TVRE + F GS + E R + I DLD+
Sbjct: 681 VAYVPQVSW-IFNATVRENILF-------GSDF----ESERYWRAIDVTALQHDLDLLP- 727
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
G D T +G+ + ISGGQK+R++ + + +
Sbjct: 728 --------------------GRDL---TEIGERGVN-ISGGQKQRVSMARAVYSNSDIYI 763
Query: 201 MDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 259
D+ + LD+ +Q+ +K + V + L P L D +IL+SEG I
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKE 819
Query: 260 QG 261
+G
Sbjct: 820 EG 821
|
Length = 1495 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 65/202 (32%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 784
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 844
E LE + ++ + S SG L
Sbjct: 39 --------------------EDILEEVLDQLLLIIVGGKKASGSGELR-----------L 67
Query: 845 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN------TGRTIVCTIHQ 898
R L +A +L P ++ +DE TS LDA A+++ + T++ T +
Sbjct: 68 RLALALARKL--KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 899 PSI----DIFESFDELLFMKRG 916
+ FD + +
Sbjct: 126 EKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 52/242 (21%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 79
IL+++S +R + GP GK+TLL +A + SG + + G P
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEA 74
Query: 80 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
+ +Y +Q + TV + L F Q I +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 138 -FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELLVGP 195
+ FAL + I+ + + +SGG+K+R+ L P
Sbjct: 115 DLLARFALP--------DSIL--------------TKNITELSGGEKQRIALIRNLQFMP 152
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255
+L +DEI++ LD S I + + R + V+ + +A D VI L G
Sbjct: 153 K-ILLLDEITSALDESNKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHADKVITLQPG 210
Query: 256 QI 257
Sbjct: 211 HA 212
|
Length = 223 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 59/232 (25%)
Query: 723 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 782
F LTAL+G SG GK+T + L + IE +I I+G K E +
Sbjct: 27 FEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIK-----------FEGQN 72
Query: 783 IHSPGLTVLE-----SLLFSAWLRLPSEI----------------ELETQRAFVEEVMEL 821
I+ + ++E ++F P + EL QR VEE
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR--VEE---- 126
Query: 822 VELTSLSGALIGLPGINGL-------STEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
SL A I + L S Q++R+ IA L P +V +DEPTS LD +
Sbjct: 127 ----SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 875 AAIVMRTVRNIVNTGRTIVCT--IHQPSIDIFESFDELLFMKRGGELIYAGP 924
++ + T+ + + I+ T + Q D+ F+ G+LI AGP
Sbjct: 183 SSEIEETLMELKHQYTFIMVTHNLQQAG----RISDQTAFLM-NGDLIEAGP 229
|
Length = 251 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 79
L++++ I + +T L+GP GK+T L L L +++ G + Y G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN------- 75
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD-IF 138
+ ++ + E+ + + F + S YD I+ KI G K + LD I
Sbjct: 76 -----IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS---YGPKIHGTKDKKKLDEIV 127
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+S +K++L E K L+T A +L SGGQ++RL L V
Sbjct: 128 EQSL----KKSALWNEVKDK---LNTNALSL---------SGGQQQRLCIARTLAIEPNV 171
Query: 199 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255
+ MDE ++ LD +T +I I LK S T+I + +A + D G
Sbjct: 172 ILMDEPTSALDPISTGKIEELIINLKES------YTIIIVTHNMQQAGRISDRTAFFLNG 225
Query: 256 QI 257
I
Sbjct: 226 CI 227
|
Length = 254 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 24/194 (12%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQET 770
Q L VT RPG + L G SGAGK+TL+ ++ G + G I I+ R+
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
F R D H LL + I L A +++ V S A
Sbjct: 76 FLRRQIGMIFQDHH---------LLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAA 121
Query: 831 L--IGL--PGIN---GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L +GL N LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 122 LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181
Query: 884 NIVNTGRTIVCTIH 897
G T++ H
Sbjct: 182 EFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 731 LVGVSGAGKTTLMDVLAGRKT--GG--IIEGDIYISGY---PKRQET---FARIS-GYCE 779
LVG +GAGK+TLM +L G G I E D+ ++ P R + ++ G E
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 780 QNDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSG------ 829
Q + L+ + L PSE L + A ++E ++ L L
Sbjct: 94 QAE-------YLKR--YHDISHLVETDPSEKNLN-ELAKLQEQLDHHNLWQLENRINEVL 143
Query: 830 ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
A +GL ++ LS ++ + LV+NP ++ +DEPT+ LD
Sbjct: 144 AQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 728 LTALVGVSGAGKTT-------LMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGY 777
+TA++G SG GK+T +++++ KT G I + +I+ Y E G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV--EELRTNVGM 109
Query: 778 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG---- 833
Q P ++ +++ + +I + ++E++E SL GA I
Sbjct: 110 VFQKPNPFPK-SIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 834 ---LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 61/254 (24%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L D++ I+P ++GP +GKTTL+ L G+I +G ++ R
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDI--SR 72
Query: 81 TS-----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135
S V Q + + T+ E + + + + E A K AG
Sbjct: 73 KSLRSMIGVVLQDTF-LFSGTIMENIRLGRP----NATDEEVIEAA---KEAGAH----- 119
Query: 136 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 195
++IMK L DT++G+ +S G+++ L ++
Sbjct: 120 ------------------DFIMK---LPNGYDTVLGENG-GNLSQGERQLLAIARAMLRD 157
Query: 196 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDV 249
++L +DE ++ +D+ T I + L+ + + G T I S ++ A D +
Sbjct: 158 PKILILDEATSNIDTETEKLIQEALE---KLMKGRTSIIIAHRLSTIKNA-------DKI 207
Query: 250 ILLSEGQIVYQGPR 263
++L +G+I+ +G
Sbjct: 208 LVLDDGKIIEEGTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 8e-04
Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARIS-----GY 777
R G + + GV+G G++ L++ ++G RK G I ++G R Y
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 778 CEQNDIH---SPGLTVLESLL--------FSAWLRL-PSEIELETQRAFVEEVME----- 820
++ L++ E+L+ FS L I R F E++E
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAI-----RKFARELIEEFDVR 393
Query: 821 ----LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
SLSG +++L +A EL P ++ +PT GLD A
Sbjct: 394 APSPDAPARSLSGG-------------NQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440
Query: 877 IVMRTVRNIVNTGRTIV 893
+ + + + G+ ++
Sbjct: 441 FIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 55/299 (18%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M ++G + L+ LS I ++G +GK+TLL A+AG L
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL---K 57
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQ--QDWQV---AEMTVRETLDFAGQCQGVGSKYD 115
SG+I +G + + + +++ QD E+T+ E L A
Sbjct: 58 PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA----------- 106
Query: 116 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEM 174
R K G+ S AL ++ S E + ++ LGL + + D +
Sbjct: 107 -----ESRGKKRGL-----------SSALNERRRSSFRERLARLGLGL----ENRLSDRI 146
Query: 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 233
+SGGQ++ L+ + P ++L +DE + LD T +++ TT++
Sbjct: 147 GL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205
Query: 234 --SLLQPAPEAYELFDDVILLSEGQIVY-----QGPRVSVLDFFASMGFSCPKRKNVAD 285
++ A + + +I+L G+IV + ++VLD F + + D
Sbjct: 206 THNMED----ALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQM--FEKIRGATLDD 258
|
Length = 263 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 8e-04
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 59/182 (32%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--------FARIS 775
R G + + G+ G G+T L + L G + G+I + G P + + A +
Sbjct: 24 RAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 776 GYCEQNDIHS----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
D L+V E++ S+ L SG
Sbjct: 82 E-----DRKREGLVLDLSVAENIALSSLL---------------------------SG-- 107
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 891
G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + + G+
Sbjct: 108 ----G-N-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 892 IV 893
++
Sbjct: 157 VL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
++L +++ +F PG ++G++GAGK+TL+ ++AG ++ + +G +
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------VDKE--FNGEARPAPGIKV 70
Query: 774 ISGYCEQNDIHSPGLTVLESLL---------------FSAWLRLPSE--IELETQRAFVE 816
GY Q P TV E++ SA P L ++A ++
Sbjct: 71 --GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 817 EVMELVELTSLSG-------ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEP 866
E+++ + L AL P + LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 867 TSGLDARAAA 876
T+ LDA + A
Sbjct: 189 TNHLDAESVA 198
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 58/273 (21%), Positives = 104/273 (38%), Gaps = 65/273 (23%)
Query: 2 TEALLRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
L+ L+ +++ ++ L +S I + +GP +GKTT L L+G L
Sbjct: 16 EPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL---Q 72
Query: 61 QVSGKITYNGHGFKEFVP-PRTSAYVSQ------QDWQVA-EMTVRETLDFAGQCQGVGS 112
SG++ G VP R ++ + Q Q+ ++ V ++
Sbjct: 73 PTSGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL--------- 118
Query: 113 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL-VG 171
LA I + P F K LD ++ L +
Sbjct: 119 -------LAA---IYDLPPAR----FKKR--------------------LDELSELLDLE 144
Query: 172 DEM---LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 228
+ + ++ +S GQ+ R L+ +LF+DE + GLD I +LK R
Sbjct: 145 ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ER 203
Query: 229 GTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261
GTTV+ + L V+++ +G+++Y G
Sbjct: 204 GTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 56/228 (24%)
Query: 43 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRE 99
SGK++LLLAL RL SG I +G + + R+ + QD + T+R
Sbjct: 41 SGKSSLLLALF-RLVE--LSSGSILIDGVDISK-IGLHDLRSRISIIPQDPVLFSGTIRS 96
Query: 100 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159
LD G+ DE+L AL + + E++ +
Sbjct: 97 NLDPFGEY-----------------------SDEELWQ-----AL---ERVGLKEFVESL 125
Query: 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY 219
G DT+V +E + +S GQ++ L L+ +++L +DE + +D T I K
Sbjct: 126 PGGL---DTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181
Query: 220 LKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGP 262
++ A TV+++ A+ L D +++L +G++V
Sbjct: 182 IRE---AFKDCTVLTI------AHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 39/240 (16%)
Query: 32 SRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQ 88
+++T ++GP GKTTLL ++ R+ H+ +V GKI + G +
Sbjct: 29 NQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQD------------IYDP 75
Query: 89 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQK 148
V E + + F S YD + A +I G+K LD
Sbjct: 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNV---AFGPRIHGVKSKHKLD------------ 120
Query: 149 TSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 207
+VE +K L D L ++ +SGGQ++RL L V+ +DE ++
Sbjct: 121 --RIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 208 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
LD T +I K L+ + T++ + +A + D + + G+++ GP ++
Sbjct: 177 LDPIATQRIEKLLE---ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQ 898
LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ +I + +TI+ H+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 61/196 (31%)
Query: 723 FRPGVLTALVGVSGAGKTTLMD---VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 779
F G LT + G +G+GK+T++D + G +G + I
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELI----- 72
Query: 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839
LSG G
Sbjct: 73 ------------------------------------------FTRLQLSG---------G 81
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 899
L +A+ + + +DE GLD R + + + G ++ H P
Sbjct: 82 EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141
Query: 900 SIDIFESFDELLFMKR 915
++ E D+L+ +K+
Sbjct: 142 --ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKT-GGIIEGDIYISGYPKRQ 768
++Q L V+ G + L+G +GAGKTTL+ L G R T G I+ I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
++ E + S +TV E+L + +E + +R ++ V EL L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF---AERDQFQER--IKWVYEL--FPRLH 128
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
I G +S +++ L I L++ P ++ +DEP+ GL + T+ +
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 889 GRTI 892
G TI
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 159 ILGLDTCADTLVGDE--MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 216
IL L DT VG+ ML SGGQK+R++ L+ A +L +D+ + +D T +QI
Sbjct: 434 ILRLPQGYDTEVGERGVML---SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 217 IKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILLSEGQIVYQGP 262
+ L+ + +G TVI S L A +++++ G I +G
Sbjct: 491 LHNLR---QWGEGRTVIISAHRLSALTEA-------SEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L NV +PG + + G +G+GK+TL+ ++ ++ + EGDI P ++
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIP-----LTKL- 382
Query: 776 GYCEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
Q D L V+ LFS + + I L A +E+ + L S+ ++
Sbjct: 383 ----QLDSWRSRLAVVSQTPFLFSD--TVANNIALGRPDATQQEIEHVARLASVHDDILR 436
Query: 834 LP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
LP G G LS Q++R++IA L+ N I+ +D+ S +D R ++ +R
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 885 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
GRT++ + H+ S E+L M+ G
Sbjct: 497 W-GEGRTVIISAHRLS--ALTEASEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 838 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
+ LS Q++R++IA L+ ++ DEPT LD+ + VM + + + G T++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 898 QPSI 901
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 27/156 (17%)
Query: 726 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-- 783
G + L+G SG GKTT++ ++AG + EG I+I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 784 --HS----PGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
S P +++ E++ + L +P E E + + V+E +ELV+L +
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKE-ERKQR---VKEALELVDLAGFEDRYV---- 134
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 -DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
LS Q++RL IA + P+++ MDEP S LD A ++ ++ + TI+ H
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVP 78
IL+ +S I S++T ++GP GK+T L L L ++V G++ + E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--- 78
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
+++ QV+ + + L F S YD +A KI G +P ++D
Sbjct: 79 --RRVNLNRLRRQVSMVHPKPNL-FPM------SVYD---NVAYGVKIVGWRPKLEIDDI 126
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
++S AL +++ + LD +SGGQ++RL L +V
Sbjct: 127 VES-ALKDADLWDEIKHKIHKSALD--------------LSGGQQQRLCIARALAVKPKV 171
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247
L MDE GLD + + ++ L S R T++ + + L D
Sbjct: 172 LLMDEPCFGLDPIASMK-VESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIH 897
LS Q++RL IA L P ++ MDEP GLD A+ V ++++ + + T+V H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 58/253 (22%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFV 77
L+DLS + P L +L+GP +GKTTL+ + G+ G++ ++G E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH- 76
Query: 78 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
++A G+G K+ T + E+L++
Sbjct: 77 -------------RIARA-------------GIGRKFQKPTVFE------NLTVRENLEL 104
Query: 138 FMKS----FA-LGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
+ FA L + + ++ ++ +GL D L +S GQK+ L G
Sbjct: 105 ALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIG 159
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF-DD 248
LL ++L +DE G+ + T + + LK +L G I +++ D
Sbjct: 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLK----SLAGKHSILVVEHDMGFVREIADK 215
Query: 249 VILLSEGQIVYQG 261
V +L EG ++ +G
Sbjct: 216 VTVLHEGSVLAEG 228
|
Length = 249 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 64/199 (32%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFVP 78
L+DLS + P L +++GP +GKTT++ + G+ G + + G G E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEH-- 72
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD----ED 134
Q+A G+G K+ + + + E+
Sbjct: 73 ------------QIARA-------------GIGRKF----------QKPTVFENLTVFEN 97
Query: 135 LDIFMKS----FAL------GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 184
L++ + FA +K +E +++ +GL AD L G +S GQK+
Sbjct: 98 LELALPRDKSVFASLFFRLSAEEKDR--IEEVLETIGLADEADRLAGL-----LSHGQKQ 150
Query: 185 RLTTGELLVGPARVLFMDE 203
L G LL+ ++L +DE
Sbjct: 151 WLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 53/198 (26%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
IL+++S +R L+ GP GK+TLL +A + SG + + G P
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPE 77
Query: 80 RTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 137
VS Q + TV + L F Q I +PD I
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQ-------------------IRNQQPDP--AI 116
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML-KGI---SGGQKKRLTTGELLV 193
F+ L D +L K I SGG+K+R++ L
Sbjct: 117 FLDDLER---------------FALP--------DTILTKNIAELSGGEKQRISLIRNLQ 153
Query: 194 GPARVLFMDEISNGLDSS 211
+VL +DEI++ LD S
Sbjct: 154 FMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGGQ +++ +L ++ +DE + GLD + Q+++ LK S + + T+I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK-SLQTDENKTIILVSH 204
Query: 238 PAPEAYELFDDVILLSEGQIVYQG-PR 263
E D+VI++ EG IV Q P+
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPK 231
|
Length = 286 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 774
+L ++ P +VG +GAGK+++++ L + + +G I I
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDC---------- 1298
Query: 775 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
D+ GLT L +LFS +R + E A + E +E +
Sbjct: 1299 -------DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIK 1351
Query: 826 S-LSGALIGL-----PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
+ GL G S QR+ L++A L+ I+ +DE T+ +D R +++
Sbjct: 1352 DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
Query: 880 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 939
RT+R + T++ H+ + I D++L + G L Y P S + +F V
Sbjct: 1412 RTIREEFKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 940 E 940
Sbjct: 1469 H 1469
|
Length = 1495 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 54/251 (21%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKITYNGHGF-K 74
T++D+L+ I+ + LLGP GKTT+L +AG L+ G+I +G
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-----LEKPTEGQIFIDGEDVTH 72
Query: 75 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
+ R V Q M++ E + + + GV E +R K A
Sbjct: 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA------- 120
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
++++ L D V D+ ISGGQ++R+ L+
Sbjct: 121 ----------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALIL 153
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVIL 251
+VL DE + LD++ + + ++ R L T + + EA+ + D VI+
Sbjct: 154 KPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209
Query: 252 LSEGQIVYQGP 262
+++G+I+ G
Sbjct: 210 MNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 6/221 (2%)
Query: 358 LLKTSFNWQLLLMKRNSFIY-VFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 416
L+ +Q+L+ I + I ++ + + R D ++
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGV 94
Query: 417 FSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFY-PSWVYTIPSWALSIPTSLIESGFWVA 475
M ++ F+ S L + R L + + + + +G +
Sbjct: 95 ILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLL 154
Query: 476 VTYYVIGYDPNVVRFSRQLLLYFFLHQM-SIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 534
V +++G LLL L ++GL + + A+ G+ +L +
Sbjct: 155 VIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLL-LSTFAKSQLQCASAVGNLLILPLGF 213
Query: 535 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 575
L G + +P W +++PL YA +A + W
Sbjct: 214 LSGVFFPLELLPAWLQGISYINPLTYAIDA--LRYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 772
L N + F+ +T ++G +G+GK+T++ + G +TG I GD I K+ +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 773 RIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 829
R+ G Q P + + + P + Q A+ ++V EL++L L
Sbjct: 87 RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAY-KKVPELLKLVQLPE 141
Query: 830 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 888
+ LS Q++R+ +A + + + + +DEPT GLD + + +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 889 GRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ I+ H + DE++ M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 44/179 (24%)
Query: 719 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 778
+ G LVG SG GK+TL+ ++AG + I G+I+I G R+
Sbjct: 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGG---------RVVNEL 71
Query: 779 E----------QNDIHSPGLTVLESLLFSAW-LR---LP-SEIELETQRAFVEEVMELVE 823
E QN P ++V E++ A+ L+ +P +EIE +R V E ++E
Sbjct: 72 EPADRDIAMVFQNYALYPHMSVRENM---AYGLKIRGMPKAEIE---ER--VAEAARILE 123
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMR 880
L L L P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 124 LEPL---LDRKP--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETFARISGYC 778
G+ + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
TV LL S T F E+ + +++ + +
Sbjct: 77 ----------TV-RDLLSS---ITKD---FYTHPYFKTEIAKPLQIEQILDRE-----VP 114
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 43/209 (20%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 79
+L +++ I + L+GP GK+TLL + G L +G++ N + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 80 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R + Q ++V + L FA +
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPAT------ 105
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+K G + + + + GLD + +SGGQ+ R+ L+ +
Sbjct: 106 LK----GNARRNAANAALERS-GLDGAF-----HQDPATLSGGQRARVALLRALLAQPKA 155
Query: 199 LFMDEISNGLDSSTTYQIIKYLKHSTRAL 227
L +DE + LD + Q +++ RA
Sbjct: 156 LLLDEPFSRLDVALRDQFRQWVFSEVRAA 184
|
Length = 213 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 697 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGG 753
+ + +E K + Q L ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 754 IIEGDIYISG---YPKRQETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIE 807
IEG++ + G Y K + + G Q P +++ +++ + + + + E
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKE 119
Query: 808 LE-------TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860
L+ + A +EV + ++ ++L LS Q++RL IA + P +
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSAL-----------KLSGGQQQRLCIARTIAVKPDV 168
Query: 861 VFMDEPTSGLD 871
+ MDEPTS LD
Sbjct: 169 ILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 79
L ++ I ++T L+GP GK+TLL L L ++++GK+T +G
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI------ 72
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
+ VA++ ++ + F S Y+ + A + GIK + LD
Sbjct: 73 -------YGNIDVADLRIKVGMVFQKPNPFPMSIYENV---AYGLRAQGIKDKKVLD--- 119
Query: 140 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
VVE ++ L D D L G+SGGQ++RL + V
Sbjct: 120 -----------EVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRLCIARTIAMEPDV 166
Query: 199 LFMDEISNGLDSSTTYQI 216
+ MDE ++ LD T++I
Sbjct: 167 ILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.003
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 31 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 90
P + L++GPP SGKTTL ALA LG G G V Q
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG----------PPGGGVIYIDGEDILEEVLDQLL 50
Query: 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 126
+ + + + + LAR+ K
Sbjct: 51 LIIVGGKKASGSGELRLRL-------ALALARKLKP 79
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 55/247 (22%), Positives = 95/247 (38%), Gaps = 52/247 (21%)
Query: 29 IRPSRLTLLLGPPSSGKTTLLLALAGRL------GHHLQVSGK-ITYNGHGFKEFVPPRT 81
I + LLGP SGK+TLL L+G + G H+++ G+ + G ++ R
Sbjct: 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRA 86
Query: 82 -SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK------YDMITELARREKIAGIKPDED 134
+ Y+ QQ V ++V E + +GS + T ++ + +
Sbjct: 87 NTGYIFQQFNLVNRLSVLENVLIG----ALGSTPFWRTCFSWFTREQKQRALQALT---- 138
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
+ M FA Q+ S + SGGQ++R+ L+
Sbjct: 139 -RVGMVHFA--HQRVSTL--------------------------SGGQQQRVAIARALMQ 169
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
A+V+ DE LD + ++ L DG TV+ L A + ++ L +
Sbjct: 170 QAKVILADEPIASLDPESARIVMDTL-RDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228
Query: 255 GQIVYQG 261
G + Y G
Sbjct: 229 GHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 159 ILGLDTCADTLVGD--EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 216
IL L DT +G+ L SGGQ++R+ L G ++ +DE ++ LDS +
Sbjct: 455 ILRLPQGYDTRIGEGGATL---SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAAL 511
Query: 217 IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+ +A GT V+ +P+ A D +++L +G+I GPR VL
Sbjct: 512 AAAILA-AKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 177 GISGG-QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235
+SGG Q+K + LL P RVL +DE + G+D Y+I K + + A +G +I +
Sbjct: 403 RLSGGNQQKAVLAKMLLTNP-RVLILDEPTRGVDVGAKYEIYKLI--NQLAQEGVAIIVV 459
Query: 236 LQPAPEAYELFDDVILLSEGQI 257
E L D V+++ EG++
Sbjct: 460 SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 59/312 (18%), Positives = 116/312 (37%), Gaps = 65/312 (20%)
Query: 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 78
+L ++S I + +LG +GK+ L+ L G + + SG+I Y+
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYH--------- 62
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLD- 136
A + + E G+ C G + E++ + L
Sbjct: 63 ---VALCEKCGYV-------ERPSKVGEPCPVCGGTLE-------PEEVDFWNLSDKLRR 105
Query: 137 --------IFMKSFALGGQKTSLVVEYIMKIL---------GLDTCADTLVGDEMLK--- 176
+ ++FAL G T V++ +++ L + D + EM++
Sbjct: 106 RIRKRIAIMLQRTFALYGDDT--VLDNVLEALEEIGYEGKEAVGRAVDLI---EMVQLSH 160
Query: 177 -------GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229
+SGG+K+R+ L + DE + LD T + L+ + +A
Sbjct: 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220
Query: 230 TTVISLLQPAPEAYE-LFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 288
+ V++ PE E L D I L G+I +G V+ F G S +++ + +
Sbjct: 221 SMVLT--SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME-GVSEVEKECEVEVGE 277
Query: 289 EVTSKKDQEQYW 300
+ ++ + +
Sbjct: 278 PIIKVRNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 724 RPGVLTALVGVSGAGKT----TLMDVLAGRKT----GGIIEGDIYISGYPKRQETF---A 772
G ALVG SG+GK+ +++ +L G I+ + +RQ
Sbjct: 34 EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGN 93
Query: 773 RISGYCEQ-----NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
+I ++ N +H+ G + E L RL + RA E++ELV +
Sbjct: 94 KIGMIFQEPMTSLNPLHTIGKQLAEVL------RLHRGLSRAAARARALELLELVGIPEP 147
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
L P + LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 148 EKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 27/190 (14%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
IL L+ +RP + ++GP SGK+TL LAGR + + G + + G E P
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
A + + + GV +++ + T L G +P LD F
Sbjct: 74 -----------DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF- 118
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 199
F L+ E KI L D L+ + G SGG+KKR ++ V +
Sbjct: 119 -DFQ------DLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELC 167
Query: 200 FMDEISNGLD 209
+DE +GLD
Sbjct: 168 ILDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 57/255 (22%), Positives = 92/255 (36%), Gaps = 65/255 (25%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
K+ L ++S I + L+G +GKTTLL L G SG+I ++G ++
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQ 73
Query: 78 PPRTS----AYVSQQDWQVAEMTVRETLDFAG-------QCQGVGSKYDMITELA-RREK 125
+ A V + + MTV E L G + + Y++ L RR +
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ 133
Query: 126 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 185
AG +SGG+++
Sbjct: 134 RAGT------------------------------------------------MSGGEQQM 145
Query: 186 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245
L G L+ R+L +DE S GL QI ++ G T+ + Q A +A +L
Sbjct: 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKL 203
Query: 246 FDDVILLSEGQIVYQ 260
D +L G +V +
Sbjct: 204 ADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.004
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 41/188 (21%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFA 772
Q+L +++ +F PG ++G++GAGK+TL+ ++AG EG+ + G
Sbjct: 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPGI-------- 70
Query: 773 RISGYCEQNDIHSPGLTVLESL------LFSAWLRLPSEI------------ELETQRAF 814
++ GY Q P TV E++ + +A R +EI L ++
Sbjct: 71 KV-GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF-NEIYAAYAEPDADFDALAAEQGE 128
Query: 815 VEEVMELVELTSLSGAL------IGLP----GINGLSTEQRKRLTIAVELVANPSIVFMD 864
++E+++ + L L + P + LS +R+R+ + L+ P ++ +D
Sbjct: 129 LQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188
Query: 865 EPTSGLDA 872
EPT+ LDA
Sbjct: 189 EPTNHLDA 196
|
Length = 556 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGY--PKRQET 770
L +V + G A++G +G+GK+TL+ L G + T G + G+ I+ K+ +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 771 FARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
+ G Q H L TV + + F P + + A ++ E++EL L
Sbjct: 83 LRKKVGIVFQFPEHQ--LFEETVEKDICFG-----PMNFGVSEEDA-KQKAREMIELVGL 134
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-V 886
L+ LS Q +R+ IA L P ++ +DEPT+GLD + +M +
Sbjct: 135 PEELLARSPFE-LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
G T V H D D+++ M +G
Sbjct: 194 EKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 36/188 (19%)
Query: 33 RLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQD 89
++T L+GP SGK+T L +L R+ + +V+G+I Y G +++++
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRG------------IDINRKE 93
Query: 90 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 149
V EM + F S Y+ IT R AG+K + LD
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALER---AGVKDKKVLD------------- 137
Query: 150 SLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL 208
+VE +K L D D L + +SGGQ++RL + +L MDE ++ L
Sbjct: 138 -EIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 209 DSSTTYQI 216
D +T Q+
Sbjct: 195 DPISTMQL 202
|
Length = 267 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1065 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-169 Score=1513.79 Aligned_cols=1008 Identities=53% Similarity=0.904 Sum_probs=922.3
Q ss_pred ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCC
Q 001507 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM 95 (1065)
Q Consensus 16 ~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~l 95 (1065)
+.+.++|+|+|+-++||+++.++||+||||||||++|+|.+.......|+|++||++.++...++.++|++|+|+|+|.+
T Consensus 125 ~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 125 KKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 45578999999999999999999999999999999999998776566889999999998887788999999999999999
Q ss_pred CHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccc
Q 001507 96 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 175 (1065)
Q Consensus 96 Tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 175 (1065)
||||+|.|+++|++++.+++. ..+.++. ....|.+++.+||++|+||+||++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~---~~R~e~~-----------------------~~~~d~~lkilGL~~~~dT~VGnd~~ 258 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDE---VSRREKL-----------------------AAMTDYLLKILGLDHCADTLVGNDMV 258 (1391)
T ss_pred EEeehhhHHHhccCCcccccc---ccHHHHH-----------------------HHHHHHHHHHhCchhhccceeccccc
Confidence 999999999999999988872 2222221 12478999999999999999999999
Q ss_pred ccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCC
Q 001507 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255 (1065)
Q Consensus 176 ~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G 255 (1065)
|++||||||||++|++++++++++++||+|+|||+.++.++++.|+.+++..+.+.++.++|++++++++||+|++|++|
T Consensus 259 RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG 338 (1391)
T KOG0065|consen 259 RGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG 338 (1391)
T ss_pred ccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred cEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhhcCC
Q 001507 256 QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 335 (1065)
Q Consensus 256 ~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
+++|+||.+++++||+++||.||+++++|||++++++..++.++|.+...+....++.++.+.|..++.++++..++..+
T Consensus 339 ~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~ 418 (1391)
T KOG0065|consen 339 YQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKP 418 (1391)
T ss_pred ceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcch
Confidence 99999999999999999999999999999999999998888888888777777778899999999999999999999999
Q ss_pred ccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccchhHHH
Q 001507 336 FDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 415 (1065)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~ 415 (1065)
.++.+.++.+...+.|..+.|.|++.|+.|.+.+++||..+++..+++.+++++++|++|++... .+..+...+.+++
T Consensus 419 ~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~l 496 (1391)
T KOG0065|consen 419 YDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGAL 496 (1391)
T ss_pred hhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHH
Confidence 88888888888899999999999999999999999999999999999999999999999999883 4455677889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccchhhHHHHHH
Q 001507 416 YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLL 495 (1065)
Q Consensus 416 f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~~~f~~~~l 495 (1065)
||++++.+++++.++...++++|+++|||+.++|++|++.++.++.++|..++...+|.+++||++|+.+++.+||.+++
T Consensus 497 ffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL 576 (1391)
T KOG0065|consen 497 FFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFL 576 (1391)
T ss_pred HHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhcCCcc
Q 001507 496 LYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 575 (1065)
Q Consensus 496 ~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ne~~~~~~ 575 (1065)
+.++.+.++.++|++++++++++.+|+.++++.++++.+++||+|+...||+||+|++|++|+.|+++++++|||++.+|
T Consensus 577 ~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~ 656 (1391)
T KOG0065|consen 577 FLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRW 656 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC---------------CCccchhHHhhhcCcC-----CCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 001507 576 DKKAGN---------------SNFSLGEAILRQRSLF-----PESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQ 635 (1065)
Q Consensus 576 ~~~~~~---------------~~~~~g~~~l~~~~~~-----~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~ 635 (1065)
.|.+.+ .....|..+++.+++. +...|+|+++|++++|.++|.++..+++.|.++.....
T Consensus 657 ~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~ 736 (1391)
T KOG0065|consen 657 PCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSG 736 (1391)
T ss_pred CCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 987221 1345678888877776 77789999999999999999999999999999887766
Q ss_pred cccchhhhhhHhhhh-cCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEeccccccccccccccee
Q 001507 636 AVVSKKELQERDRRR-KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQ 714 (1065)
Q Consensus 636 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
.....++........ .......+..+ .. ...+..+...++.+..++++|+.|.++.+.+++..+ ++++
T Consensus 737 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~s---~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~q 805 (1391)
T KOG0065|consen 737 AILVFKKGKEKKKVKSAGSSSEIEKLD-----DS---SHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQ 805 (1391)
T ss_pred ceeeeccchhhhcchhccccccccccc-----cc---cccccccccCCCccccccccceEEEEeCCccccccc---cceE
Confidence 655443322211110 00000000000 00 001234556778888999999999999888877655 6789
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHH
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 794 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 794 (1065)
+|+|||+.++||.++||||+||||||||||+|+||...|.++|+|.|||.|.++..++|.+|||.|+|.+.+.+||+|.|
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL 885 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESL 885 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHH
Confidence 99999999999999999999999999999999999998999999999999998889999999999999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCC-CceeecCCCCCCCHH
Q 001507 795 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP-SIVFMDEPTSGLDAR 873 (1065)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p-~il~lDEPtsgLD~~ 873 (1065)
.|+|.+|+|.+.+.+++.+.||++++.++|.+++|.++|.++ +|||.+|||||+||.+|+.|| .||||||||||||+.
T Consensus 886 ~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsq 964 (1391)
T KOG0065|consen 886 RFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQ 964 (1391)
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHH
Confidence 999999999999999999999999999999999999999998 899999999999999999999 899999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCccc
Q 001507 874 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAA 953 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~npa~ 953 (1065)
++..|++.+|++++.|+||+||+|||+.++++.||++++|++||+++|+||++++++.+++||++++|. +||+..||||
T Consensus 965 aA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~ 1043 (1391)
T KOG0065|consen 965 AAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAE 1043 (1391)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999885 7988889999
Q ss_pred ceeeccCccccccccccHHHHHHhcHHHHHHHHHHHhhCCCCCC-CcCcCCCCccCCCHHHHHHHHHHHHHHHHhcChHH
Q 001507 954 WMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPS-SKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQY 1032 (1065)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~ 1032 (1065)
|+||+++...+.+.+.||++.|++|++++++++.++.++.+.+. ..+..+.++|++|+|.|++.+++|++..+||+|.|
T Consensus 1044 ~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y 1123 (1391)
T KOG0065|consen 1044 WMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDY 1123 (1391)
T ss_pred HHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHH
Confidence 99999998888778889999999999999999999999887777 66667788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccccccc
Q 001507 1033 TAVRFFYTVVISLMLGSICWKFGAKRFAIKVF 1064 (1065)
Q Consensus 1033 ~~~r~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 1064 (1065)
+++|+++.++.||++|++||++|++..++|+.
T Consensus 1124 ~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~ 1155 (1391)
T KOG0065|consen 1124 LMARFALTIVAGLFIGFTFWKVGHNVQGLQNA 1155 (1391)
T ss_pred HHHHHHHHHHHHHhheeeeeecCCcHHHHHHH
Confidence 99999999999999999999999999988863
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-155 Score=1499.46 Aligned_cols=1048 Identities=62% Similarity=1.054 Sum_probs=881.0
Q ss_pred CccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCC
Q 001507 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 94 (1065)
Q Consensus 15 ~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~ 94 (1065)
++.++++|+|+|+.++||++++|+|||||||||||++|+|++.++...+|+|.+||+++.+...++.++||+|+|.|++.
T Consensus 174 k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred CCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 33467899999999999999999999999999999999999977555799999999988665556789999999999999
Q ss_pred CCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcc
Q 001507 95 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 174 (1065)
Q Consensus 95 lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 174 (1065)
+||+|||.|++++++.+.+++...+..+.++..+..++.+.+.+++.....+.+.+..++.+++.+||++++||.||++.
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 99999999999887655444332222333333233333333333333333333344568899999999999999999999
Q ss_pred cccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecC
Q 001507 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254 (1065)
Q Consensus 175 ~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~ 254 (1065)
+++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.++|+++||+.++++++||+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 99999999999999999999999999999999999999999999999998765677788888888999999999999999
Q ss_pred CcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhhcC
Q 001507 255 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 334 (1065)
Q Consensus 255 G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1065)
|+++|+||.+++.+||+++||.||+++|++||++++++..+++.+|.....|....+++++.++|+.+..++...+++..
T Consensus 414 G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 493 (1470)
T PLN03140 414 GQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSV 493 (1470)
T ss_pred ceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998766655554444555556789999999999887776666554
Q ss_pred CccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccchhHH
Q 001507 335 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 414 (1065)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~ 414 (1065)
+.++...++.....+.|..+.+.|+..++.|+++.++||+..++.++++.+++|+++|++||+++.+.....+...+.|+
T Consensus 494 ~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~ 573 (1470)
T PLN03140 494 PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGA 573 (1470)
T ss_pred hhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Confidence 44333333333344568888999999999999999999999999999999999999999999987654444455677899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccchhhHHHHH
Q 001507 415 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 494 (1065)
Q Consensus 415 ~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~~~f~~~~ 494 (1065)
+||++++.+++++.++..++.+||+++|||+.++|++++|+++++++++|+.++.+++|.+++|||+|+.+++.+|+.++
T Consensus 574 lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~ 653 (1470)
T PLN03140 574 LLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQL 653 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhcCCc
Q 001507 495 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 574 (1065)
Q Consensus 495 l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ne~~~~~ 574 (1065)
++.++.+.++.+++++++++++++.+|+.+++++++++++++||+++.+.||+||+|++|+||+.|+++++++|||.+..
T Consensus 654 l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~ 733 (1470)
T PLN03140 654 LLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPR 733 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccc-CCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhh-cC
Q 001507 575 WDKK-AGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR-KG 652 (1065)
Q Consensus 575 ~~~~-~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 652 (1065)
|.+. +.+.....|+.+++.+++.....|+|.+++++++++++|.++.++++.|..+.................... ..
T Consensus 734 ~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1470)
T PLN03140 734 WMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSI 813 (1470)
T ss_pred ccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccc
Confidence 7532 223346789999999999888889999999999999999999999999987554433332211100000000 00
Q ss_pred ------cc-hh---Hhh--hhhhhc-----ccC-c-cCcccccCCcccCccceeEEEeceeEEEecccccccccccccce
Q 001507 653 ------EN-VV---IEL--REYLQR-----SSS-L-NGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRL 713 (1065)
Q Consensus 653 ------~~-~~---~~~--~~~~~~-----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
+. .. .+. +..... ... . .....+..+..+++.+.+++|+|++|.++.+.+.++.+...+++
T Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~ 893 (1470)
T PLN03140 814 PRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRL 893 (1470)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCc
Confidence 00 00 000 000000 000 0 00011223445678889999999999998776555555445667
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHH
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 793 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 793 (1065)
.+|+|||++++||+++||||||||||||||++|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.+++.+||+|+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 89999999999999999999999999999999999987666799999999887655566789999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHH
Q 001507 794 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873 (1065)
Q Consensus 794 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~ 873 (1065)
|.|++.+|.+...+.+++.++++++++.++|.+++|+.+|.+.+++|||||||||+||++|+.+|+||||||||+|||+.
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 99999888765555666677899999999999999999988777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCccc
Q 001507 874 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAA 953 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~npa~ 953 (1065)
++..+++.|++++++|+|||+++|||+.++++.||++++|++||+++|+||.+++++++++||++++|.++||+++||||
T Consensus 1054 ~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd 1133 (1470)
T PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133 (1470)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchh
Confidence 99999999999998899999999999977889999999998789999999998888899999999977767999999999
Q ss_pred ceeeccCccccccccccHHHHHHhcHHHHHHHHHHHhhCCCCCCCcCcCCCCccCCCHHHHHHHHHHHHHHHHhcChHHH
Q 001507 954 WMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYT 1033 (1065)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~ 1033 (1065)
|+||+++...+.....+|++.|++|+++++..+.++++..+.+...+..+..+|++++|+|+++|++|+++++||||.++
T Consensus 1134 ~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~ 1213 (1470)
T PLN03140 1134 WMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYN 1213 (1470)
T ss_pred hhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHH
Confidence 99999886555444568999999999988887777666555444444445567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccccc
Q 001507 1034 AVRFFYTVVISLMLGSICWKFGAKRFAIK 1062 (1065)
Q Consensus 1034 ~~r~~~~~~~~l~~g~~~~~~~~~~~~~~ 1062 (1065)
++|+++++++||++|++||+++++..++|
T Consensus 1214 ~~r~~~~i~~al~~G~~f~~~~~~~~~~~ 1242 (1470)
T PLN03140 1214 LVRFFFTLAAALMVGTIFWKVGTKRSNAN 1242 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhh
Confidence 99999999999999999999998876555
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-141 Score=1371.83 Aligned_cols=1005 Identities=33% Similarity=0.546 Sum_probs=808.9
Q ss_pred ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCC-CCceeEEEEECCccCCCC--CCCceEEEEccccccC
Q 001507 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH-HLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQV 92 (1065)
Q Consensus 16 ~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~-~~~~~G~i~~~g~~~~~~--~~~~~~~yv~Q~~~~~ 92 (1065)
..++++|+|||+.+++||+++|+||||||||||||+|+|+..+ ..+.+|+|.+||.++.+. ..++.++||+|+|.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 3457899999999999999999999999999999999998742 123699999999887532 2345699999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccC
Q 001507 93 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 172 (1065)
Q Consensus 93 ~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 172 (1065)
+.+||+||+.|+++++.+....+... +.+ ..+..++.+++.+||++++||.||+
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~---~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~ 204 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVS---REE-----------------------YAKHIADVYMATYGLSHTRNTKVGN 204 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCC---HHH-----------------------HHHHHHHHHHHHcCcccccCceeCC
Confidence 99999999999887654221100000 000 0012256789999999999999999
Q ss_pred cccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEe
Q 001507 173 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252 (1065)
Q Consensus 173 ~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l 252 (1065)
+.+++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|+++++..+.++|+++||+.++++++||+|++|
T Consensus 205 ~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L 284 (1394)
T TIGR00956 205 DFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL 284 (1394)
T ss_pred CcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence 99999999999999999999999999999999999999999999999999987556677777788889999999999999
Q ss_pred cCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhh
Q 001507 253 SEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEEL 332 (1065)
Q Consensus 253 ~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1065)
++|+++++|+++++.+||+++||.||++.|++||+.+++++.++.. +. ..+.....+++++.+.|+.+..++...++.
T Consensus 285 ~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~-~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (1394)
T TIGR00956 285 YEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQI-KP-GYEKKVPRTPQEFETYWRNSPEYAQLMKEI 362 (1394)
T ss_pred eCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhc-cc-cccccCCCCHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987654321 11 111112345788999999887766554443
Q ss_pred cCCccC---------------CCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcc
Q 001507 333 AVPFDR---------------RFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFR 397 (1065)
Q Consensus 333 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~ 397 (1065)
+....+ ....+.....+.+..+++.|+..+++|+++..+||+..++.++++.+++|+++|++||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~ 442 (1394)
T TIGR00956 363 DEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYN 442 (1394)
T ss_pred HHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 321110 00001112234577889999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhh
Q 001507 398 TTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 477 (1065)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~ 477 (1065)
.+.+. .+...+.|++|+++++..+.++..+..++.+|++++||+..++|++++|+++++++++|+.++.+++|.+++
T Consensus 443 ~~~~~---~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~ 519 (1394)
T TIGR00956 443 LPKNT---SDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIIL 519 (1394)
T ss_pred CCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 87543 244567899999999999998888888889999999999999999999999999999999999999999999
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcH
Q 001507 478 YYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSP 557 (1065)
Q Consensus 478 y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp 557 (1065)
|||+|+..++.+|+.++++.++...++.++++++++++++...|+.+++++.+++++++||+++...||+||+|++|++|
T Consensus 520 Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp 599 (1394)
T TIGR00956 520 YFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNP 599 (1394)
T ss_pred EEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcccccC---C---------------------CCCccchhHHhhhcCcCCCccchhHHHHHHHHH
Q 001507 558 LMYAQNAASVNEFLGHSWDKKA---G---------------------NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGY 613 (1065)
Q Consensus 558 ~~y~~~~~~~ne~~~~~~~~~~---~---------------------~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~ 613 (1065)
+.|++++++.|||.+..+.|.. . +.+...|+++++. .+.....|.|.++++++++
T Consensus 600 ~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~ 678 (1394)
T TIGR00956 600 LAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGF 678 (1394)
T ss_pred HHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHH
Confidence 9999999999999988776631 0 0123477888874 3344456899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccccchhh--hhh-HhhhhcCcchhHhhhhhhhcccCccCccccc-CCcc-cC--ccce
Q 001507 614 TLLFNALFTFFLSYLNPLGKQQAVVSKKE--LQE-RDRRRKGENVVIELREYLQRSSSLNGKYFKQ-KGMV-LP--FQPL 686 (1065)
Q Consensus 614 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~ 686 (1065)
.++|.++..+++.|..+...........+ ... .......+......++..+..........+. .... .+ ....
T Consensus 679 ~v~f~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1394)
T TIGR00956 679 TVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGED 758 (1394)
T ss_pred HHHHHHHHHHHHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCc
Confidence 99999999999999874433211111110 000 0000000000000000000000000000000 0000 00 1123
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCcc
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYP 765 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~~~G~i~i~g~~ 765 (1065)
.+.|+|+++.++.. .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ +.+|+|.+||++
T Consensus 759 ~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred eEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE
Confidence 47889988776321 23468999999999999999999999999999999999987643 467999999998
Q ss_pred CCcccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHH
Q 001507 766 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQR 845 (1065)
Q Consensus 766 ~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqr 845 (1065)
+.. .+++.+|||+|+|.+++.+||+|++.|++.++.+...+.+++.++++++++.++|.+++|+.++.++ .+||||||
T Consensus 830 ~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqr 907 (1394)
T TIGR00956 830 LDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQR 907 (1394)
T ss_pred CCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHh
Confidence 753 4677899999999999999999999999988876655666677889999999999999999987654 37999999
Q ss_pred HHHHHHHHHHhCCC-ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 001507 846 KRLTIAVELVANPS-IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924 (1065)
Q Consensus 846 qr~~ia~~l~~~p~-il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 924 (1065)
|||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999999888999999999999767788999999998779999999
Q ss_pred CCCchhHHHHHHHhcCCCCCCCCCCCcccceeeccCccccccccccHHHHHHhcHHHHHHHHHHHhhCCCCCCC---cCc
Q 001507 925 LGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSS---KKL 1001 (1065)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~npa~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~ 1001 (1065)
.+++++++++||+.. |.++||+++|||||+||+++...+.....+|.+.|+.|+.++...+.++....+.... ...
T Consensus 988 ~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1394)
T TIGR00956 988 LGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDP 1066 (1394)
T ss_pred cccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCcccccc
Confidence 988888999999997 5458999999999999998865443334689999999988776655544432221111 111
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCccccccc
Q 001507 1002 NFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRFAIKVF 1064 (1065)
Q Consensus 1002 ~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 1064 (1065)
....++++|||+|+++|++|+++++||||.++++|+++++++|+++|++||++++++.++|..
T Consensus 1067 ~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~ 1129 (1394)
T TIGR00956 1067 DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQ 1129 (1394)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 112468999999999999999999999999999999999999999999999999999998864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-77 Score=718.27 Aligned_cols=777 Identities=21% Similarity=0.249 Sum_probs=418.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++.+++..+|+|+|+.|++|+.++|+|||||||||++++|.+++.|. +|+|.+||.++.+.. .+.+|
T Consensus 353 f~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~i 429 (1228)
T KOG0055|consen 353 FRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQI 429 (1228)
T ss_pred EEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhc
Confidence 578889999888999999999999999999999999999999999999999886 999999999987764 45789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|.|.|+|.+|. .||+|||.|+... ...+.+.++++. ++..--...|
T Consensus 430 glV~QePvlF~-~tI~eNI~~G~~d----at~~~i~~a~k~-----------------------------ana~~fi~~l 475 (1228)
T KOG0055|consen 430 GLVSQEPVLFA-TTIRENIRYGKPD----ATREEIEEAAKA-----------------------------ANAHDFILKL 475 (1228)
T ss_pred Ceeeechhhhc-ccHHHHHhcCCCc----ccHHHHHHHHHH-----------------------------ccHHHHHHhh
Confidence 99999998665 6999999986321 111112222211 1111123457
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++.+||.||++++ +|||||||||+|||||+.+|+|||||||||+||+++...+.+.|.+..+ |+|||+ ++|..+.+
T Consensus 476 p~g~~T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv-VaHRLStI 551 (1228)
T KOG0055|consen 476 PDGYDTLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV-VAHRLSTI 551 (1228)
T ss_pred HHhhcccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE-Eeeehhhh
Confidence 8889999999887 5999999999999999999999999999999999999999999998753 566666 78999988
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHh--cCccchhccccCCCCCCCCCChhHHHHHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV--TSKKDQEQYWSNPYLPYRYISPGKFAEAFH 320 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1065)
.+ +|+|++|++|+|++.|+++|+.+. ..-.++.+... ....+.. .... . .......
T Consensus 552 rn-aD~I~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~~-~~~~-~---------~~~~~~~ 609 (1228)
T KOG0055|consen 552 RN-ADKIAVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAEDE-EEEE-S---------LKEERSR 609 (1228)
T ss_pred hc-cCEEEEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhcc-cccc-c---------hhhhhhh
Confidence 77 999999999999999999999851 11122222211 1110000 0000 0 0000000
Q ss_pred hChhhhhhHHhhcCCccCCCC--CccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-------HHHH
Q 001507 321 SYHTGKNLSEELAVPFDRRFN--HPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIV-------ALIT 391 (1065)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~-------~l~~ 391 (1065)
+. .................. ............. .......+.|-++..+..+.+.+...+.+++. ++.+
T Consensus 610 s~-~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~ 687 (1228)
T KOG0055|consen 610 SL-KSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVS-EEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVF 687 (1228)
T ss_pred cc-ccccccccccCCccccccccccccccccccccc-cccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 00 000000000000000000 0000000000000 00012223344444444444444433333332 2223
Q ss_pred HHHhcccC-CCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHH
Q 001507 392 MTVFFRTT-MHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIES 470 (1065)
Q Consensus 392 g~~f~~~~-~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~ 470 (1065)
+.++--.. .+.+........+..+|.++....+... +.+. ++-....+.-...+-.
T Consensus 688 s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~-----~~q~------------------~~f~~~ge~Lt~R~R~ 744 (1228)
T KOG0055|consen 688 SQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITN-----FLQH------------------YFFGIAGEKLTKRLRS 744 (1228)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH------------------HHHHHHHHHHHHHHHH
Confidence 32221111 0001111111112333333222111110 0000 0000000111111111
Q ss_pred HHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCCh--HHHHHHHHHHHHHHHHhhccccCCCCcchh
Q 001507 471 GFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNM--IVANTFGSFAMLVVMALGGFIISRDSIPKW 548 (1065)
Q Consensus 471 ~~~~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~--~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~ 548 (1065)
..|..+.+.=+++-.+..+- .- +...++.=+++. .+...++.++..+..+..|+.+.. +
T Consensus 745 ~~F~~ll~qd~~wFD~~~ns-g~-------------l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf-----~ 805 (1228)
T KOG0055|consen 745 MMFRALLRQEVGWFDDPENS-GA-------------LSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF-----I 805 (1228)
T ss_pred HHHHHHHcCCCcccCCCccc-hH-------------HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 12222222222211111000 00 000000000000 011111111111111111111100 0
Q ss_pred hHHh-----HhhcHHHHHHHHH---------------------HHHhhcCCcccccCCCCCccchhHHhhhcCc---CCC
Q 001507 549 WIWG-----FWVSPLMYAQNAA---------------------SVNEFLGHSWDKKAGNSNFSLGEAILRQRSL---FPE 599 (1065)
Q Consensus 549 ~~w~-----~~isp~~y~~~~~---------------------~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~---~~~ 599 (1065)
..|- .-+.|+....... ..+|-...-.+ ...++..+.+.+.+.- .+.
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrT----V~al~~e~~~~~~y~~~l~~p~ 881 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRT----VAALCAEEKFMELYKEELEKPR 881 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH----HHHHhhHHHHHHHHHHHHHHHH
Confidence 0010 0112222111111 11111100000 0001111111111100 000
Q ss_pred ----ccchhHHHHHHHHHHHHH---HHHHHHHHHhcCCCCCccc-c---cchhhh------------hhHhhhhcCcchh
Q 001507 600 ----SYWYWIGVGAMLGYTLLF---NALFTFFLSYLNPLGKQQA-V---VSKKEL------------QERDRRRKGENVV 656 (1065)
Q Consensus 600 ----~~~~~~~~g~ll~~~~~~---~~l~~~~l~~~~~~~~~~~-~---~~~~~~------------~~~~~~~~~~~~~ 656 (1065)
....|.+++..+...+.| .+.++++...+........ + ...... .+..+.......+
T Consensus 882 ~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~i 961 (1228)
T KOG0055|consen 882 KSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSI 961 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 011234443333322222 2222222222211100000 0 000000 0000000000000
Q ss_pred HhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCC
Q 001507 657 IELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSG 736 (1065)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nG 736 (1065)
..+. .+.+..++. ...+...+...-.+.++|+++.++. .++.+||+|+|++|++|+.+||+||||
T Consensus 962 F~i~---dr~~~i~~~--~~~~~~~~~~~G~I~~~~V~F~YPs----------RP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 962 FEIL---DRKPTIDPD--STSGGKLPNVKGDIEFRNVSFAYPT----------RPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred HHHh---cCCCCCCCC--CCCCCccccceeEEEEeeeEeeCCC----------CCCchhhcCCcEEecCCCEEEEECCCC
Confidence 1111 011101000 0112122223446899999998864 356789999999999999999999999
Q ss_pred CcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHH
Q 001507 737 AGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 813 (1065)
Q Consensus 737 aGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 813 (1065)
|||||.+.+|-+... +..|.|.|||++++. ..+|+++|.|.|+|.||. -|++||+.|+. . +.+.++
T Consensus 1027 sGKSTvI~LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e--- 1095 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE--- 1095 (1228)
T ss_pred CCHHHHHHHHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH---
Confidence 999999999988765 679999999998754 567889999999999986 49999999971 1 123222
Q ss_pred HHHHHHHHc-------CCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHH
Q 001507 814 FVEEVMELV-------ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886 (1065)
Q Consensus 814 ~~~~~l~~l-------~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~ 886 (1065)
+.++.+.. +|.+-.|+.+|..+ .+||||||||++|||||++||+||||||+||+||+++.+.|+++|.+.
T Consensus 1096 -Ii~Aak~ANaH~FI~sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a- 1172 (1228)
T KOG0055|consen 1096 -IIEAAKLANAHNFISSLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA- 1172 (1228)
T ss_pred -HHHHHHHhhhHHHHhcCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-
Confidence 33333333 34455677777665 479999999999999999999999999999999999999999999996
Q ss_pred hCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 887 ~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
..|+|.|+++|+++ ..+.+|.|.|++ +|+|++.|+-
T Consensus 1173 ~~gRT~IvIAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1173 MEGRTTIVIAHRLS--TIQNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred hcCCcEEEEecchh--hhhcCCEEEEEE-CCEEEecccH
Confidence 46999999999986 568899999998 5899999974
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-75 Score=711.09 Aligned_cols=568 Identities=24% Similarity=0.398 Sum_probs=469.9
Q ss_pred cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCC
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lT 96 (1065)
.++++|+|+|+++++||+++|+|||||||||||++|+|+..+....+|+|.+||.++.....++.++||+|+|++++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35779999999999999999999999999999999999987644468999999998764445678999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcc-c
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM-L 175 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~ 175 (1065)
|+|||.|++.++.+..... ++.+.+++++++.+||.+++||.||+.. .
T Consensus 116 V~e~l~f~~~~~~~~~~~~-------------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 164 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTK-------------------------------KEKRERVDEVLQALGLRKCANTRIGVPGRV 164 (617)
T ss_pred HHHHHHHHHhcCCCCCCCH-------------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCCC
Confidence 9999999887653221100 0112348999999999999999999853 6
Q ss_pred ccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCC
Q 001507 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255 (1065)
Q Consensus 176 ~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G 255 (1065)
++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|+++++. +.++|+++||+..+++++||++++|++|
T Consensus 165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G 243 (617)
T TIGR00955 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEG 243 (617)
T ss_pred CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCC
Confidence 789999999999999999999999999999999999999999999999864 6777777778778999999999999999
Q ss_pred cEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhhcCC
Q 001507 256 QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 335 (1065)
Q Consensus 256 ~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
+++|+|+++++.+||+++|++||++.||+||+.++.+....... .......++.+.+..+...++..+.....
T Consensus 244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 316 (617)
T TIGR00955 244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNLW 316 (617)
T ss_pred eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhhh
Confidence 99999999999999999999999999999999998764321100 00011234444555444333332222111
Q ss_pred ccCC--C-CCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccchh
Q 001507 336 FDRR--F-NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 412 (1065)
Q Consensus 336 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~ 412 (1065)
.... . ..........+..+++.|+..+++|.++..+|++..+..++++.+++++++|++||+.+.+. .+.....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~~ 393 (617)
T TIGR00955 317 SGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNIN 393 (617)
T ss_pred hccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHHH
Confidence 1000 0 00011122345678899999999999999999999999999999999999999999876432 2334557
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccchhhHH
Q 001507 413 GALYFSMVIILFNGF-TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFS 491 (1065)
Q Consensus 413 ~~~f~~l~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~~~f~ 491 (1065)
|++|+.++...+.++ ..+..+..++++++||+..++|++++|++++.+.++|..++.+++|.+++|||+|+..++.+|+
T Consensus 394 g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~ 473 (617)
T TIGR00955 394 GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHH
Confidence 778888777766654 4566777899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhc
Q 001507 492 RQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFL 571 (1065)
Q Consensus 492 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ne~~ 571 (1065)
.++++.++...++.+++.++++++++...|..+++++.+++++++||+++...||.||+|++|++|++|++++++.|||.
T Consensus 474 ~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~ 553 (617)
T TIGR00955 474 TFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS 553 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcc-cccCC---CCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001507 572 GHSW-DKKAG---NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYL 628 (1065)
Q Consensus 572 ~~~~-~~~~~---~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~ 628 (1065)
+..+ .|... ..+...|+.+++.+++... +.|.++++++++.++|.++.++++++.
T Consensus 554 ~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 554 DVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 33221 2234568899998887653 458999999999999999999998764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-76 Score=730.75 Aligned_cols=766 Identities=20% Similarity=0.256 Sum_probs=413.0
Q ss_pred hhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEcccc
Q 001507 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD 89 (1065)
Q Consensus 10 ~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~ 89 (1065)
++........+.|+|||++|++|+++||+|+.|||||+||.+|.|+++. .+|+|.++| .++||+|++
T Consensus 525 sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~g----------siaYv~Q~p 591 (1381)
T KOG0054|consen 525 SFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNG----------SVAYVPQQP 591 (1381)
T ss_pred eEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcC----------eEEEecccc
Confidence 3333333344589999999999999999999999999999999999865 499999999 599999999
Q ss_pred ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccccc
Q 001507 90 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 169 (1065)
Q Consensus 90 ~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 169 (1065)
|++. .||||||.|+.... ..+|+.+.++|.+++|....|.+| .|.
T Consensus 592 WI~n-gTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~Te 636 (1381)
T KOG0054|consen 592 WIQN-GTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTE 636 (1381)
T ss_pred HhhC-CcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cce
Confidence 9655 69999999987654 567888999998888877766665 499
Q ss_pred ccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccE
Q 001507 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 170 vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v 249 (1065)
||++++ +|||||||||+||||+|+++||++||+|+|++|++++.+|++.+.. ..++++|+|.+|| .-+..+.+|.|
T Consensus 637 IGErGi-nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~--~~L~~KT~ILVTH-ql~~L~~ad~I 712 (1381)
T KOG0054|consen 637 IGERGI-NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR--GLLRGKTVILVTH-QLQFLPHADQI 712 (1381)
T ss_pred ecCCcc-CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH--hhhcCCEEEEEeC-chhhhhhCCEE
Confidence 999887 7999999999999999999999999999999999999999998763 3445677777888 55677889999
Q ss_pred EEecCCcEEEEcCcchHHH---HHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhh
Q 001507 250 ILLSEGQIVYQGPRVSVLD---FFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGK 326 (1065)
Q Consensus 250 ~~l~~G~i~~~G~~~~~~~---~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1065)
++|++|+|.+.|+.+|+.+ .|+++ ..+........ .....+......... +. +......
T Consensus 713 ivl~~G~I~~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~ 774 (1381)
T KOG0054|consen 713 IVLKDGKIVESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLS 774 (1381)
T ss_pred EEecCCeEecccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhc
Confidence 9999999999999999973 22222 00000000000 000000000000000 00 0000000
Q ss_pred hhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHhcccCCCCCc-
Q 001507 327 NLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIY-VFKFIQLLIVALITMTVFFRTTMHHKT- 404 (1065)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~-~~~~~~~~~~~l~~g~~f~~~~~~~~~- 404 (1065)
...+. . .... ..+......+ ......+.....+.+.......... +..+.......+.+++-||-..+....
T Consensus 775 ~~~~~-~-~~~~--~~~~~~~~~e--e~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~ 848 (1381)
T KOG0054|consen 775 SEEEK-S-KDEK--EEEDKLVQEE--ERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGE 848 (1381)
T ss_pred ccccc-c-cccc--chhhHHHHHH--HHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 00000 0 0000 0000000000 0000001111122222221111111 112222333334444444422221111
Q ss_pred --c---ccccchhHHHHHHHHHHHHH-HHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 001507 405 --I---DDGGLYLGALYFSMVIILFN-GFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTY 478 (1065)
Q Consensus 405 --~---~~~~~~~~~~f~~l~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y 478 (1065)
. .+...+.+.+.+..+..++. ....+...... ...++ .+.-.++..+ +-+..+
T Consensus 849 ~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~-----------------l~aS~---~Lh~~ml~~I-lrapm~ 907 (1381)
T KOG0054|consen 849 DNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGG-----------------LKASR---KLHDKLLNSI-LRAPMS 907 (1381)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH---HHHHHHHHHH-HhCcch
Confidence 1 11222222211111111111 11111000000 00000 0111111111 111111
Q ss_pred hccc--cccchhhHHHHHHHH-----HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHH
Q 001507 479 YVIG--YDPNVVRFSRQLLLY-----FFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIW 551 (1065)
Q Consensus 479 ~l~g--~~~~~~~f~~~~l~~-----~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w 551 (1065)
|+-. ..+-..||..++-.. +....+...+..+++.+. .++.. .+.+.++.+ | +.+
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~---vi~~~-~P~fli~~~------------p--l~v 969 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV---VISYV-TPWFLIAII------------P--LGV 969 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHH-hHHHHHHHH------------H--HHH
Confidence 1110 011123444333211 111111111111111110 00000 000000000 0 011
Q ss_pred hHhhcHHHHHHHHHHHHhhcCCc---------------ccccCCCCCccchhHHhhhcCcCCCccc------hhHHHHHH
Q 001507 552 GFWVSPLMYAQNAASVNEFLGHS---------------WDKKAGNSNFSLGEAILRQRSLFPESYW------YWIGVGAM 610 (1065)
Q Consensus 552 ~~~isp~~y~~~~~~~ne~~~~~---------------~~~~~~~~~~~~g~~~l~~~~~~~~~~~------~~~~~g~l 610 (1065)
+||.--.+|...+.-+....+.. .+.++-+.....-.......+.+...++ .|.++..=
T Consensus 970 ~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle 1049 (1381)
T KOG0054|consen 970 IYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLE 1049 (1381)
T ss_pred HHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12211222222222222111111 1111111111111111111111222222 24333221
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCccccc--ch-hh--------hhhHhhhhcCcchhHhhhhhh--------hcccCcc
Q 001507 611 -LGYTLLFNALFTFFLSYLNPLGKQQAVV--SK-KE--------LQERDRRRKGENVVIELREYL--------QRSSSLN 670 (1065)
Q Consensus 611 -l~~~~~~~~l~~~~l~~~~~~~~~~~~~--~~-~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 670 (1065)
++..+++.+.+...+........+.... +. .. .......++....+..+.++. ......+
T Consensus 1050 ~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~p 1129 (1381)
T KOG0054|consen 1050 LLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRP 1129 (1381)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCC
Confidence 1111111111111111111010010000 00 00 000000000000111111111 1111114
Q ss_pred CcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCC
Q 001507 671 GKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~ 750 (1065)
++.||..| .+.|+|++.++.. +...+|||||++|+|||++||+|++|||||||.++|.+..
T Consensus 1130 p~~WP~~G--------~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~ 1190 (1381)
T KOG0054|consen 1130 PPSWPSKG--------EIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV 1190 (1381)
T ss_pred CCCCCCCC--------eEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc
Confidence 56787776 5778887766532 3357999999999999999999999999999999999987
Q ss_pred CCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 001507 751 TGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827 (1065)
Q Consensus 751 ~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 827 (1065)
. +.+|+|.|||.++.. ..+|++++.+||||.+|.+ |+|+||. | ..+..++.++++++..+|.+.
T Consensus 1191 e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLD-------P---f~e~sD~~IW~ALe~~~Lk~~ 1257 (1381)
T KOG0054|consen 1191 E--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLD-------P---FDEYSDDEIWEALERCQLKDV 1257 (1381)
T ss_pred C--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccC-------c---ccccCHHHHHHHHHHhChHHH
Confidence 6 568999999998754 5678899999999999976 9999883 2 334455678999999988655
Q ss_pred ccCccc------CCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcH
Q 001507 828 SGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901 (1065)
Q Consensus 828 ~~~~~~------~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~ 901 (1065)
.....+ .+++.++|.||||.+||||||+++++||+|||+|+++|+++...|+++||+-. +++|||+++|+.+
T Consensus 1258 v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~- 1335 (1381)
T KOG0054|consen 1258 VSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN- 1335 (1381)
T ss_pred HhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-
Confidence 432221 13457899999999999999999999999999999999999999999999954 5899999999986
Q ss_pred HHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 902 DIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 902 ~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
....+|||+||++ |+++++|+|.
T Consensus 1336 -TVmd~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1336 -TVMDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred -hhhhcCeEEEeeC-CeEeecCChH
Confidence 4456899999985 8999999874
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-75 Score=697.95 Aligned_cols=562 Identities=30% Similarity=0.477 Sum_probs=471.2
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCCH
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 97 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv 97 (1065)
.+++|+|||+.++|||++||+||+||||||||++|+|+.......+|+|++||++......++.+|||.|+|.+++++||
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 57899999999999999999999999999999999999876556899999999877766778889999999999999999
Q ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccccc
Q 001507 98 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177 (1065)
Q Consensus 98 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 177 (1065)
+|++.|++.++.+... ..++.+.+|+++++.|||.+++||+||+...|+
T Consensus 122 ~EtL~f~A~lrlp~~~-------------------------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rg 170 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSL-------------------------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRG 170 (613)
T ss_pred HHHHHHHHHhcCCCCC-------------------------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCc
Confidence 9999999988754320 112234569999999999999999999988899
Q ss_pred CchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcE
Q 001507 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257 (1065)
Q Consensus 178 LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i 257 (1065)
+||||||||+||..|+.||+||+|||||||||+.++.++++.|+++|+. |+++|+++|||+.+++++||++++|++|++
T Consensus 171 iSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~ 249 (613)
T KOG0061|consen 171 LSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEV 249 (613)
T ss_pred cccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcE
Confidence 9999999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred EEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCcc--chhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhhcCC
Q 001507 258 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKK--DQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 335 (1065)
Q Consensus 258 ~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1065)
+|+|+++++.+||++.|++||++.||+||+.++.+.. .+.... ........+.++......+........
T Consensus 250 vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (613)
T KOG0061|consen 250 VYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEE--------AVRIAKLINKFSQTDNLKKTLEALEKS 321 (613)
T ss_pred EEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHh--------HHHHHHHhhhccccchhhhhHHHHhhh
Confidence 9999999999999999999999999999999987642 110000 000000000000000000000000000
Q ss_pred ccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccchhHHH
Q 001507 336 FDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 415 (1065)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~ 415 (1065)
..... ........+++.|+..+.+|.+...+|++.+...+.++.+++++++|.+||+.+.+... .....++.
T Consensus 322 ~~~~~-----~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~---~~~~~g~~ 393 (613)
T KOG0061|consen 322 LSTSK-----KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKG---IQNRLGLF 393 (613)
T ss_pred ccccc-----ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHH---HHHHHHHH
Confidence 00000 00001157899999999999999999999999999999999999999999998644332 22556777
Q ss_pred HHHHHHHHHHHHH-HHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccchhhHHHHH
Q 001507 416 YFSMVIILFNGFT-EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 494 (1065)
Q Consensus 416 f~~l~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~~~f~~~~ 494 (1065)
|+.+.+..+..+. .+..+..+++++.||+..++|+.++|++++.++++|..++.+++|.+++|||+|+.++..+|+.++
T Consensus 394 ~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~ 473 (613)
T KOG0061|consen 394 FFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFL 473 (613)
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 7777777555544 688889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhcCCc
Q 001507 495 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 574 (1065)
Q Consensus 495 l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ne~~~~~ 574 (1065)
++.++...++.+++.+++++.++...+.+++++..+.+++++||+++.+.||.||.|+.|+|..+|+++++..|+|.+..
T Consensus 474 l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~ 553 (613)
T KOG0061|consen 474 LIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGS 553 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998733
Q ss_pred ccccCC--CCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001507 575 WDKKAG--NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 629 (1065)
Q Consensus 575 ~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~ 629 (1065)
..|... ..+...+..+++..++... ..|.++.+++++.++|.++.++.+++..
T Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 554 SRCFLSGNLCCESTGEDVLKQLGFEDS--SFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred cccccCcCCcccccHHHHHHhcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333222 4566778888888877554 4588999999999999999999888753
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-74 Score=695.21 Aligned_cols=563 Identities=24% Similarity=0.355 Sum_probs=441.3
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCCH
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 97 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv 97 (1065)
++.+|+|+|+++++||+++|+|||||||||||++|+|++.+. ..+|+|.+||+++... .++.++||+|++.+++.+||
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV 157 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTV 157 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCH
Confidence 457999999999999999999999999999999999998763 3599999999886432 23569999999999999999
Q ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccccc
Q 001507 98 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177 (1065)
Q Consensus 98 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 177 (1065)
+||+.|++.++..... . .++..++++++++.+||++++||.+|++..++
T Consensus 158 ~E~l~~~a~~~~~~~~-~------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 206 (659)
T PLN03211 158 RETLVFCSLLRLPKSL-T------------------------------KQEKILVAESVISELGLTKCENTIIGNSFIRG 206 (659)
T ss_pred HHHHHHHHHhCCCCCC-C------------------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCC
Confidence 9999997654321100 0 00112347889999999999999999998999
Q ss_pred CchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcE
Q 001507 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 257 (1065)
Q Consensus 178 LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i 257 (1065)
|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|+++++ .++++|+++||+..++.++||++++|++|++
T Consensus 207 LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 207 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285 (659)
T ss_pred cChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcE
Confidence 999999999999999999999999999999999999999999999876 3556666555555579999999999999999
Q ss_pred EEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhhcC---
Q 001507 258 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV--- 334 (1065)
Q Consensus 258 ~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 334 (1065)
++.|+++++.+||+++||+||++.||+||+.++.+.............+ .......+.|++... .........
T Consensus 286 v~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 361 (659)
T PLN03211 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHF 361 (659)
T ss_pred EEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhh
Confidence 9999999999999999999999999999999998653221000000000 011223333322111 000000000
Q ss_pred Cc--cCC---CCCcc-ccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001507 335 PF--DRR---FNHPA-ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 408 (1065)
Q Consensus 335 ~~--~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~ 408 (1065)
.. ... ..... ......+..+++.|+..+++|+++. +|+......++++.+++|+++|++||+.+ ..+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~ 435 (659)
T PLN03211 362 PQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDV 435 (659)
T ss_pred hcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHH
Confidence 00 000 00000 0011123457889999999999887 78888888999999999999999999864 2234
Q ss_pred cchhHHHHHHHHHHH-HHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccch
Q 001507 409 GLYLGALYFSMVIIL-FNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNV 487 (1065)
Q Consensus 409 ~~~~~~~f~~l~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~ 487 (1065)
..+.|++||++.+.. ...+..+..+..+|++++||+..++|++++|+++++++++|+.++.+++|.+++|||+|+..++
T Consensus 436 ~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~ 515 (659)
T PLN03211 436 QDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPEL 515 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCH
Confidence 567888888876654 4556778888899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHH
Q 001507 488 VRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASV 567 (1065)
Q Consensus 488 ~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ 567 (1065)
.+|+.++++.++...++.+++.++++++++...|+.+++++++++++|+||+++ .||+||+|++|+||++|++++++.
T Consensus 516 ~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~ 593 (659)
T PLN03211 516 GAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLIN 593 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 799999999999999999999999
Q ss_pred HhhcCCcc-----cccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001507 568 NEFLGHSW-----DKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYL 628 (1065)
Q Consensus 568 ne~~~~~~-----~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~ 628 (1065)
|||.+... .|..........-.++....+. ....|.++++++++.+++.++.++.+++.
T Consensus 594 nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 594 VQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HhcCCccccccccCCCCcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99975432 2321110000000112111121 23468899999999999999998888754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-73 Score=728.97 Aligned_cols=201 Identities=28% Similarity=0.416 Sum_probs=178.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCCH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
+.+|+||||.|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.+|||+|++.+++.+||
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 579999999999999999999999999999999999877 568999999988642 2345679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+|++.+.+.++.. ..++.++.++++++.++|.+.+|+.+ +.|||||||||+||+||+.+|+||||||||+||
T Consensus 2030 ~E~L~l~a~l~g~---~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRGV---PAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 9999988776532 23344567889999999998888765 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|. +|++++.|++
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGTI 2154 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999878999999999987 6788899999998 5899999986
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-72 Score=726.30 Aligned_cols=566 Identities=24% Similarity=0.397 Sum_probs=468.9
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCCH
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 97 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv 97 (1065)
++.+|+|||+.++||++++|+|||||||||||++|+|+..+ ...+|+|.+||.+......++.+|||+|+|.+++.+||
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 45799999999999999999999999999999999998754 24689999999876543445679999999999999999
Q ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccccc
Q 001507 98 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177 (1065)
Q Consensus 98 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 177 (1065)
+|||.|++.++.+... + ..+..+.++++++.+||.+++|+.+|+..+++
T Consensus 971 ~E~L~~~a~lr~~~~~-~------------------------------~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~ 1019 (1470)
T PLN03140 971 RESLIYSAFLRLPKEV-S------------------------------KEEKMMFVDEVMELVELDNLKDAIVGLPGVTG 1019 (1470)
T ss_pred HHHHHHHHHhCCCCCC-C------------------------------HHHHHHHHHHHHHHCCChhHhCCccCCCCCCC
Confidence 9999998765421110 0 00112348899999999999999999877789
Q ss_pred CchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecC-Cc
Q 001507 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE-GQ 256 (1065)
Q Consensus 178 LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~-G~ 256 (1065)
|||||||||+||++|+.+|+||||||||||||+.++..+++.|+++++. ++++|+++||+..++++.||++++|++ |+
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 9999999999999999999999999999999999999999999999764 667677666666688999999999996 89
Q ss_pred EEEEcCc----chHHHHHHhC-CC-CCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHH
Q 001507 257 IVYQGPR----VSVLDFFASM-GF-SCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSE 330 (1065)
Q Consensus 257 i~~~G~~----~~~~~~f~~l-G~-~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1065)
++|+|+. +++.+||+++ |+ .||++.|||||+.++.+..... ....++.+.|+.+..++...+
T Consensus 1099 ~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~ 1166 (1470)
T PLN03140 1099 VIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKA 1166 (1470)
T ss_pred EEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHH
Confidence 9999996 6899999997 66 4999999999999987542211 012357778887776655443
Q ss_pred hhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 001507 331 ELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGL 410 (1065)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~ 410 (1065)
...................++..+++.|+..+++|++..+||++.+...++++.+++|+++|++||+.+.+..+.++...
T Consensus 1167 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~ 1246 (1470)
T PLN03140 1167 LVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTM 1246 (1470)
T ss_pred HHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHH
Confidence 33211100001111112345778899999999999999999999999999999999999999999998765544455555
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccchhh
Q 001507 411 YLGALYFSMVIILFNGF-TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVR 489 (1065)
Q Consensus 411 ~~~~~f~~l~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~~~ 489 (1065)
..|++|+++++..+... ..++.+..+|++++||+..++|++++|+++++++++|+.++.+++|.+++|||+|+..++..
T Consensus 1247 ~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~ 1326 (1470)
T PLN03140 1247 VIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAK 1326 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHH
Confidence 67888888777666554 34566677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHh
Q 001507 490 FSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNE 569 (1065)
Q Consensus 490 f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ne 569 (1065)
|+.++++.++...+..+++.++++++++..+|..+++++..++++|+||+++...||.||+|++|++|+.|++++++.|+
T Consensus 1327 f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~ 1406 (1470)
T PLN03140 1327 FFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQ 1406 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCCC-CccchhHH-hhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001507 570 FLGHSWDKKAGNS-NFSLGEAI-LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNP 630 (1065)
Q Consensus 570 ~~~~~~~~~~~~~-~~~~g~~~-l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~ 630 (1065)
|.+....+.+++. +...+.++ ...+++.. .+.|.++++++++.++|.+++.+++++++.
T Consensus 1407 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1407 YGDVEDTIKVPGGAPDPTIKWYIQDHYGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred hCCCCCcccCCCCCCCCcHHHHHHHhcCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 9887665544321 12344455 56667654 467899999999999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=621.12 Aligned_cols=487 Identities=25% Similarity=0.315 Sum_probs=366.0
Q ss_pred HHHhhhhcCCcc-ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC-CceeEEEEECCccCCCCC------
Q 001507 6 LRQLRIYRGNRS-KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFV------ 77 (1065)
Q Consensus 6 ~~~~~~~~~~~~-~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~-~~~~G~i~~~g~~~~~~~------ 77 (1065)
++++++.+.... ...+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++....
T Consensus 8 V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~ 87 (539)
T COG1123 8 VENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRK 87 (539)
T ss_pred EeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHH
Confidence 355665554432 357999999999999999999999999999999999999875 346899999998764432
Q ss_pred -CCceEEEEccccc--cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHH
Q 001507 78 -PPRTSAYVSQQDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154 (1065)
Q Consensus 78 -~~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (1065)
..+.|+|++|++. +-|-+||.+.|.-....++... ..+...++.
T Consensus 88 ~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~ 134 (539)
T COG1123 88 LRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAV 134 (539)
T ss_pred hccccEEEEecCchhhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHH
Confidence 2367999999974 5566899998876555443211 112234588
Q ss_pred HHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 155 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 155 ~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
++|+.+||++.... +++++.|||||||||.||+||+.+|++|++||||++||+.++.+|++.|+++.++ .++++++
T Consensus 135 elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ 210 (539)
T COG1123 135 ELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLF 210 (539)
T ss_pred HHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEE
Confidence 89999999986544 5688999999999999999999999999999999999999999999999999876 4777888
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGK 314 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1065)
+||+...+.++||+|+||++|++++.|+++++.+- |.+ |++. .
T Consensus 211 ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~--------p~h-------------------------pYT~----~ 253 (539)
T COG1123 211 ITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN--------PQH-------------------------PYTR----G 253 (539)
T ss_pred EcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc--------cCC-------------------------cccH----H
Confidence 99999999999999999999999999999887531 110 0000 0
Q ss_pred HHHHHHhChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 001507 315 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTV 394 (1065)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~ 394 (1065)
+. ..
T Consensus 254 Ll---~a------------------------------------------------------------------------- 257 (539)
T COG1123 254 LL---AA------------------------------------------------------------------------- 257 (539)
T ss_pred HH---hh-------------------------------------------------------------------------
Confidence 00 00
Q ss_pred hcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHH
Q 001507 395 FFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 474 (1065)
Q Consensus 395 f~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~ 474 (1065)
.|.......
T Consensus 258 ------------------------------------------~p~~~~~~~----------------------------- 266 (539)
T COG1123 258 ------------------------------------------VPRLGDEKI----------------------------- 266 (539)
T ss_pred ------------------------------------------CCCcccccc-----------------------------
Confidence 000000000
Q ss_pred hhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHh
Q 001507 475 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFW 554 (1065)
Q Consensus 475 ~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~ 554 (1065)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcHHHHHHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 001507 555 VSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQ 634 (1065)
Q Consensus 555 isp~~y~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~ 634 (1065)
.
T Consensus 267 -----------------------~-------------------------------------------------------- 267 (539)
T COG1123 267 -----------------------I-------------------------------------------------------- 267 (539)
T ss_pred -----------------------c--------------------------------------------------------
Confidence 0
Q ss_pred ccccchhhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEeccccccccccccccee
Q 001507 635 QAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQ 714 (1065)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
. .... .. .. ...-++.+|++..+.....+. ....+...
T Consensus 268 -----------------------~-------~~~~--~~-~~-------~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~ 305 (539)
T COG1123 268 -----------------------R-------LPRR--GP-LR-------AEPLLSVRNLSKRYGSRKGLF--VRERGEVK 305 (539)
T ss_pred -----------------------c-------cccc--cc-cc-------cCceeEeeeeeeeeccccccc--ccccccee
Confidence 0 0000 00 00 000122333332222111000 00023467
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC--C---cccccceEEEEcCCC--CCCCC
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK--R---QETFARISGYCEQND--IHSPG 787 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~~~v~q~~--~~~~~ 787 (1065)
+++||||.+++||++||+|+||||||||.++|+|+.+ +.+|.|.++|.+. . ....++.+-+|+||+ .+.|.
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 8999999999999999999999999999999999987 4689999999762 1 123455677888875 57899
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+||++.+.-........ ...+.++++.++++..+|.. ..++. +.+||||||||++|||||+.+|++|++|||
T Consensus 384 ~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp 456 (539)
T COG1123 384 MTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEP 456 (539)
T ss_pred ccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCC
Confidence 99999998765443322 24566678999999999975 34433 368999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||.||+..+..|.++|+++.++ |.|.|+||||+. .+...||||++|. .|+++..||.
T Consensus 457 ~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~G~iVE~G~~ 514 (539)
T COG1123 457 VSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-DGRIVEEGPT 514 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-CCeEEEeCCH
Confidence 9999999999999999999766 999999999987 4778899999998 5899999974
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=720.84 Aligned_cols=211 Identities=22% Similarity=0.299 Sum_probs=176.6
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.|+|+++.++. +.+++|+|+||+|+|||++||+||||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 5888998887731 22469999999999999999999999999999999999877 5689999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccCcccCCC
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 836 (1065)
.. ..+|+.++||||++.+|.+ |+||||.++. .. .++.++++++..++.+. .|+.++..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 54 5678899999999999976 9999996531 11 23446778887777543 34444432
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
..+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....||+|++|+ +
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd-~ 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLD-A 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999974 5899999999976 456799999998 5
Q ss_pred cEEEEeCCCC
Q 001507 917 GELIYAGPLG 926 (1065)
Q Consensus 917 g~~~~~g~~~ 926 (1065)
|+++..|++.
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 8999999864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=718.63 Aligned_cols=210 Identities=21% Similarity=0.288 Sum_probs=176.0
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.++|+|+++.++. +.+++|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5888998887731 23469999999999999999999999999999999999877 5689999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cCcccCCC
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 836 (1065)
.. ..+|+.++||||++.+|++ |++|||.+.. ..+ ++.++++++..++.+.. |+.++..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 43 5678899999999999976 9999996421 112 33467788887775432 3444432
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
..+||||||||+||||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|+ +
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~-~ 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLS-S 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999874 5899999999975 456799999998 5
Q ss_pred cEEEEeCCC
Q 001507 917 GELIYAGPL 925 (1065)
Q Consensus 917 g~~~~~g~~ 925 (1065)
|+++..|++
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 899999986
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-71 Score=661.07 Aligned_cols=513 Identities=27% Similarity=0.393 Sum_probs=446.6
Q ss_pred cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCC
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lT 96 (1065)
.++++|+||++.++||.+|||||+|||||||||++|+||... ..++|+|++||.+.++...+|.+|||.|+|.|.+.+|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 568899999999999999999999999999999999999754 4689999999999987778899999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|||.|.|++.+|.+.+.. ..+..+.||++++.++|++++|.+||+.+ +
T Consensus 881 VrESL~fSA~LRlp~~v~-------------------------------~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVS-------------------------------DEEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCcCC-------------------------------HHHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 999999999887543210 11123459999999999999999999988 8
Q ss_pred cCchhhhhhHHHHHHHhcCC-eEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEec-C
Q 001507 177 GISGGQKKRLTTGELLVGPA-RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS-E 254 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p-~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~-~ 254 (1065)
|||.+||||++||-.|+.+| .||+|||||||||+.++..|++.+|++++ .|++++|+||||+..+++.||++++|. .
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999997 589999999999999999999999996 5
Q ss_pred CcEEEEcCcch----HHHHHHhCC-CCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhH
Q 001507 255 GQIVYQGPRVS----VLDFFASMG-FSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLS 329 (1065)
Q Consensus 255 G~i~~~G~~~~----~~~~f~~lG-~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1065)
|+++|.||..+ +.+||++.| .+||+..|||||+.++.....+.. ...++++.|+.+..++...
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 89999999754 567999987 899999999999999987543321 1247889999999888776
Q ss_pred HhhcCCccCCC-CCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccc
Q 001507 330 EELAVPFDRRF-NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 408 (1065)
Q Consensus 330 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~ 408 (1065)
+++..-..... ...+.....++..+.+.|++.+++|++..+||++.+..++++..++.++++|..||+.+. +.++.
T Consensus 1076 e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~l 1152 (1391)
T KOG0065|consen 1076 ELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGL 1152 (1391)
T ss_pred HHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHH
Confidence 65442211111 122233345678899999999999999999999999999999999999999999999873 34455
Q ss_pred cchhHHHHHHHHHHHHHHHH-HHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccch
Q 001507 409 GLYLGALYFSMVIILFNGFT-EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNV 487 (1065)
Q Consensus 409 ~~~~~~~f~~l~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~ 487 (1065)
++..++.|.++++....... +......++.+++||+..++|+..+|.++..++++|+.++.+++|.++.|+++|+...+
T Consensus 1153 qn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a 1232 (1391)
T KOG0065|consen 1153 QNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTA 1232 (1391)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhH
Confidence 66788888877666544443 44455567889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHH
Q 001507 488 VRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASV 567 (1065)
Q Consensus 488 ~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ 567 (1065)
.+++.+++..++.......++.++.+++|+...|..+.+++..++.+|+|+++++..||.||+|+||++|+.|..+++..
T Consensus 1233 ~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~ 1312 (1391)
T KOG0065|consen 1233 SKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLIS 1312 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHH
Confidence 99999988888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCccccc
Q 001507 568 NEFLGHSWDKK 578 (1065)
Q Consensus 568 ne~~~~~~~~~ 578 (1065)
..+++....|.
T Consensus 1313 ~~~~d~~v~c~ 1323 (1391)
T KOG0065|consen 1313 SQLGDVEVTCE 1323 (1391)
T ss_pred HHhCCCceeee
Confidence 99887665554
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=690.07 Aligned_cols=559 Identities=24% Similarity=0.352 Sum_probs=450.1
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCCH
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 97 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv 97 (1065)
++.+|+|||++++|||+++|+|||||||||||++|+|+.++..+.+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 4679999999999999999999999999999999999986433458999999998753 346779999999999999999
Q ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccccc
Q 001507 98 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177 (1065)
Q Consensus 98 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 177 (1065)
+||+.|++.++.+... . ..+..++++++++.+||.+++|+.||+.+. +
T Consensus 854 ~E~L~~~a~l~~~~~~-~------------------------------~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSV-S------------------------------KSEKMEYVEEVIKLLEMESYADAVVGVPGE-G 901 (1394)
T ss_pred HHHHHHHHHhCCCCCC-C------------------------------HHHHHHHHHHHHHHcCChhhCCCeeCCCCC-C
Confidence 9999998765532110 0 001123488999999999999999986543 7
Q ss_pred CchhhhhhHHHHHHHhcCCe-EEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCC-
Q 001507 178 ISGGQKKRLTTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG- 255 (1065)
Q Consensus 178 LSGGqkqRv~ia~al~~~p~-vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G- 255 (1065)
|||||||||+||+||+.+|+ ||||||||||||+.++..+++.|+++++. +.++|+++||+...+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999996 99999999999999999999999999753 5666666666665678899999999987
Q ss_pred cEEEEcCc----chHHHHHHhCCC-CCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHH
Q 001507 256 QIVYQGPR----VSVLDFFASMGF-SCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSE 330 (1065)
Q Consensus 256 ~i~~~G~~----~~~~~~f~~lG~-~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1065)
+++++|+. +++.+||++.|+ +||++.|||||+.++.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 578999999996 99999999999999876422110 01245566666554443332
Q ss_pred hhcC---CccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 001507 331 ELAV---PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 407 (1065)
Q Consensus 331 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~ 407 (1065)
+.+. +..............++..+++.|+..+++|.++..+|++.+...++++.+++|+++|.+||+.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 2211 1110000001111235778999999999999999999999999999999999999999999998753 234
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcchhh-hhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccc
Q 001507 408 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVL-YKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPN 486 (1065)
Q Consensus 408 ~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~ 486 (1065)
.+...+++|+.+.+..+.....++.+..++.++ +||+..++|+..+|+++++++++|+.++.+++|.+++||++|+..+
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 456677777776655554445556666777764 8999999999999999999999999999999999999999999877
Q ss_pred hhh-------HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHH
Q 001507 487 VVR-------FSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLM 559 (1065)
Q Consensus 487 ~~~-------f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~ 559 (1065)
+.. |+.++++.++...+..+++.++++++++..+|..+++++..++++|+||+++...||.||+|++|+||+.
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 654 8889998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccccCC-------------------------------C---CC----ccchhHHhhhcCcCCCcc
Q 001507 560 YAQNAASVNEFLGHSWDKKAG-------------------------------N---SN----FSLGEAILRQRSLFPESY 601 (1065)
Q Consensus 560 y~~~~~~~ne~~~~~~~~~~~-------------------------------~---~~----~~~g~~~l~~~~~~~~~~ 601 (1065)
|++++++.|+|.+....|... + .| ...|+++++..++...
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~-- 1363 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYS-- 1363 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccc--
Confidence 999999999998876544221 0 01 3478888887776544
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc
Q 001507 602 WYWIGVGAMLGYTLLFNALFTFFLSYL 628 (1065)
Q Consensus 602 ~~~~~~g~ll~~~~~~~~l~~~~l~~~ 628 (1065)
..|.+++++++|.+++ ++.++.+.|.
T Consensus 1364 ~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1364 GRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred ccccchhhhhHHHHHH-HHHHHhhheE
Confidence 3588999999998888 5555555543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=637.27 Aligned_cols=470 Identities=21% Similarity=0.326 Sum_probs=351.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~ 81 (1065)
++++++.++ ++.+|+||||++++|++++|+||||||||||+++|+|.++|. +.+|+|.++|.++.... .++.
T Consensus 8 ~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 8 MKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred EeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCC
Confidence 345665553 246999999999999999999999999999999999998751 24999999998875432 1356
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++||+|++.+++.+||+||+.++........ .+ ......+++++++.+|
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~ 132 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGI-MD------------------------------YDAMYLRAQKLLAQLK 132 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCC-cC------------------------------HHHHHHHHHHHHHHcC
Confidence 9999999988999999999988643210000 00 0001224788899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .+++|++++|+.++
T Consensus 133 l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~~~tvi~~tH~~~~ 205 (506)
T PRK13549 133 LDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA--HGIACIYISHKLNE 205 (506)
T ss_pred CCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHH
Confidence 987766655 46999999999999999999999999999999999999999999999864 25677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHh
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHS 321 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1065)
+..+||++++|++|++++.|+.+++.. .+.. +
T Consensus 206 ~~~~~d~v~~l~~G~i~~~~~~~~~~~---------------~~~~-----------------------------~---- 237 (506)
T PRK13549 206 VKAISDTICVIRDGRHIGTRPAAGMTE---------------DDII-----------------------------T---- 237 (506)
T ss_pred HHHhcCEEEEEECCEEeeecccccCCH---------------HHHH-----------------------------H----
Confidence 999999999999999998886533200 0000 0
Q ss_pred ChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001507 322 YHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMH 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 401 (1065)
+ +....
T Consensus 238 -------------------------------------------~-----------------------------~~~~~-- 243 (506)
T PRK13549 238 -------------------------------------------M-----------------------------MVGRE-- 243 (506)
T ss_pred -------------------------------------------H-----------------------------hhCcC--
Confidence 0 00000
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcc
Q 001507 402 HKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481 (1065)
Q Consensus 402 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~ 481 (1065)
.
T Consensus 244 ---~---------------------------------------------------------------------------- 244 (506)
T PRK13549 244 ---L---------------------------------------------------------------------------- 244 (506)
T ss_pred ---c----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHH
Q 001507 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYA 561 (1065)
Q Consensus 482 g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~ 561 (1065)
+.
T Consensus 245 ----------------------------------------------------------------~~-------------- 246 (506)
T PRK13549 245 ----------------------------------------------------------------TA-------------- 246 (506)
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred HHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchh
Q 001507 562 QNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 641 (1065)
Q Consensus 562 ~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 641 (1065)
.
T Consensus 247 ----------------------------------~--------------------------------------------- 247 (506)
T PRK13549 247 ----------------------------------L--------------------------------------------- 247 (506)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred hhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeee
Q 001507 642 ELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~ 721 (1065)
.+. .. . +. + ..-+.++|+++.++. .+++.+|+|+||
T Consensus 248 -----------------~~~----~~----~--~~-~------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl 283 (506)
T PRK13549 248 -----------------YPR----EP----H--TI-G------EVILEVRNLTAWDPV----------NPHIKRVDDVSF 283 (506)
T ss_pred -----------------ccc----cc----c--CC-C------CceEEEecCcccccc----------ccccccccceee
Confidence 000 00 0 00 0 001333343322100 023468999999
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCC---CCCCCCCHHHHH
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESL 794 (1065)
Q Consensus 722 ~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~---~~~~~ltv~e~l 794 (1065)
+|++||++||+||||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||.||+
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI 362 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHh
Confidence 9999999999999999999999999998652 258999999987532 12345689999985 467889999999
Q ss_pred HHHhhccCCC-C-CCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 795 LFSAWLRLPS-E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 795 ~~~~~~~~~~-~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
.+........ . .......+.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|++|||||||+|||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 363 TLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred hhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 8753211110 0 12233445688999999996 4556544 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
+.++..++++|++++++|+|||++|||++ ++.+.||++++|.+ |+++..|+..+
T Consensus 438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 99999999999999888999999999986 57788999999984 89998887654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=698.61 Aligned_cols=211 Identities=20% Similarity=0.235 Sum_probs=176.4
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.++|+|+++.++. +...+|+||||+|+|||++||+||||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 5888998887742 12369999999999999999999999999999999999877 5689999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccCcccCCC
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 836 (1065)
.. ..+|+.++||||++.+|.+ |+||||.... ..+ ++.++++++..++.+. .|+.++..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 5678899999999999986 9999995211 112 2346788888877543 34444432
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
..+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+|+|+++ ....+|+|++|+ +
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld-~ 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD-K 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999864 5899999999975 567799999998 5
Q ss_pred cEEEEeCCCC
Q 001507 917 GELIYAGPLG 926 (1065)
Q Consensus 917 g~~~~~g~~~ 926 (1065)
|+++..|++.
T Consensus 1495 G~IvE~G~~~ 1504 (1522)
T TIGR00957 1495 GEVAEFGAPS 1504 (1522)
T ss_pred CEEEEECCHH
Confidence 8999999863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-68 Score=632.63 Aligned_cols=460 Identities=19% Similarity=0.298 Sum_probs=349.2
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~ 81 (1065)
++++++.++ ++++|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.
T Consensus 7 ~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 7 LKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred EeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCC
Confidence 345555553 246999999999999999999999999999999999999876 999999998764321 1346
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++.+||+||+.|+..........+ ....+.+++++++.+|
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~ 130 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRID------------------------------WKKMYAEADKLLARLN 130 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccC------------------------------HHHHHHHHHHHHHHcC
Confidence 9999999988999999999988643210000000 0001224778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..+..++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++.. +++|++++|+.++
T Consensus 131 l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~~~ 203 (501)
T PRK10762 131 LRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRLKE 203 (501)
T ss_pred CCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 9887766554 59999999999999999999999999999999999999999999998643 5677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHh
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHS 321 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1065)
+..+||+|++|++|+++..|+.+++.. ....+.
T Consensus 204 ~~~~~d~i~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--- 236 (501)
T PRK10762 204 IFEICDDVTVFRDGQFIAEREVADLTE--------------------------------------------DSLIEM--- 236 (501)
T ss_pred HHHhCCEEEEEeCCEEEEecCcCcCCH--------------------------------------------HHHHHH---
Confidence 999999999999999998876433200 000000
Q ss_pred ChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001507 322 YHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMH 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 401 (1065)
++...
T Consensus 237 -------------------------------------------------------------------------~~~~~-- 241 (501)
T PRK10762 237 -------------------------------------------------------------------------MVGRK-- 241 (501)
T ss_pred -------------------------------------------------------------------------hcCCC--
Confidence 00000
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcc
Q 001507 402 HKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481 (1065)
Q Consensus 402 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~ 481 (1065)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHH
Q 001507 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYA 561 (1065)
Q Consensus 482 g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~ 561 (1065)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchh
Q 001507 562 QNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 641 (1065)
Q Consensus 562 ~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 641 (1065)
.. .
T Consensus 242 -------------~~--------------------------------------------------------------~-- 244 (501)
T PRK10762 242 -------------LE--------------------------------------------------------------D-- 244 (501)
T ss_pred -------------cc--------------------------------------------------------------c--
Confidence 00 0
Q ss_pred hhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeee
Q 001507 642 ELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~ 721 (1065)
..+. .. . +. .+..+.++|++ +.+|+|+||
T Consensus 245 ----------------~~~~----~~----~--~~-------~~~~l~~~~l~------------------~~~l~~vsl 273 (501)
T PRK10762 245 ----------------QYPR----LD----K--AP-------GEVRLKVDNLS------------------GPGVNDVSF 273 (501)
T ss_pred ----------------cccc----cc----c--CC-------CCcEEEEeCcc------------------cCCcccceE
Confidence 0000 00 0 00 00013333332 136889999
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCC---CCCCCCCHHHHH
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESL 794 (1065)
Q Consensus 722 ~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l 794 (1065)
+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+|||+|++ .+++.+||.||+
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 351 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENM 351 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHh
Confidence 999999999999999999999999999876 4689999999876421 2345699999995 577889999999
Q ss_pred HHHhhccCC---CCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 795 LFSAWLRLP---SEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 795 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.+....... .........+.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|++|||||||+||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 352 SLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred hhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 875321100 0012233345688999999994 5566544 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|+.++..+.+.|++++++|.|||++||+++ ++...||++++|. +|+++..|+...
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 481 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMH-EGRISGEFTREQ 481 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEE-CCEEEEEecccc
Confidence 999999999999999877999999999987 5778899999998 589998887654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=634.86 Aligned_cols=468 Identities=19% Similarity=0.283 Sum_probs=349.4
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~ 81 (1065)
++++++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.
T Consensus 8 ~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 8 MAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred EeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCC
Confidence 355655553 246999999999999999999999999999999999999775 999999998875432 1246
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++||+|++.+++.+||+||+.++..... ..+... . . . ..+...+++++++.+|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~-~----------~-~-------------~~~~~~~~~~~l~~~g 134 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTK--KVCGVN-I----------I-D-------------WREMRVRAAMMLLRVG 134 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhcccccc--cccccc-c----------c-C-------------HHHHHHHHHHHHHHcC
Confidence 9999999988999999999987532100 000000 0 0 0 0011234788999999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++. +++|++++|+.++
T Consensus 135 l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~ 207 (510)
T PRK09700 135 LKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAE 207 (510)
T ss_pred CCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 987776655 469999999999999999999999999999999999999999999998653 5677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHh
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHS 321 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1065)
+..+||++++|++|++++.|+++++.. .+.. +
T Consensus 208 ~~~~~d~v~~l~~G~i~~~g~~~~~~~---------------~~~~-----------------------------~---- 239 (510)
T PRK09700 208 IRRICDRYTVMKDGSSVCSGMVSDVSN---------------DDIV-----------------------------R---- 239 (510)
T ss_pred HHHhCCEEEEEECCEEeeecchhhCCH---------------HHHH-----------------------------H----
Confidence 999999999999999998886543210 0000 0
Q ss_pred ChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001507 322 YHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMH 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 401 (1065)
. +....
T Consensus 240 ---------~---------------------------------------------------------------~~~~~-- 245 (510)
T PRK09700 240 ---------L---------------------------------------------------------------MVGRE-- 245 (510)
T ss_pred ---------H---------------------------------------------------------------hcCCC--
Confidence 0 00000
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcc
Q 001507 402 HKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481 (1065)
Q Consensus 402 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~ 481 (1065)
..
T Consensus 246 ---~~--------------------------------------------------------------------------- 247 (510)
T PRK09700 246 ---LQ--------------------------------------------------------------------------- 247 (510)
T ss_pred ---cc---------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHH
Q 001507 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYA 561 (1065)
Q Consensus 482 g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~ 561 (1065)
.
T Consensus 248 -----------------------------------------------------------~-------------------- 248 (510)
T PRK09700 248 -----------------------------------------------------------N-------------------- 248 (510)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred HHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchh
Q 001507 562 QNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 641 (1065)
Q Consensus 562 ~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 641 (1065)
. . . ..
T Consensus 249 -------~-----~----------------------~----------------------------------------~~- 253 (510)
T PRK09700 249 -------R-----F----------------------N----------------------------------------AM- 253 (510)
T ss_pred -------c-----c----------------------c----------------------------------------cc-
Confidence 0 0 0 00
Q ss_pred hhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeee
Q 001507 642 ELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~ 721 (1065)
.+ ... . +. .+.-+.++|++.. + ..+|+|+||
T Consensus 254 -----------------~~-----~~~---~--~~-------~~~~l~~~~l~~~-------------~--~~~l~~isl 284 (510)
T PRK09700 254 -----------------KE-----NVS---N--LA-------HETVFEVRNVTSR-------------D--RKKVRDISF 284 (510)
T ss_pred -----------------cc-----ccc---c--CC-------CCcEEEEeCcccc-------------C--CCcccceeE
Confidence 00 000 0 00 0012444444321 1 137999999
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCC---CCCCCCCCHHHHH
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQN---DIHSPGLTVLESL 794 (1065)
Q Consensus 722 ~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~---~~~~~~ltv~e~l 794 (1065)
+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|+ ..+++.+||+||+
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l 362 (510)
T PRK09700 285 SVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNM 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHh
Confidence 999999999999999999999999999876 468999999987532 1234568999998 4578899999999
Q ss_pred HHHhhcc---CCC--C-CCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 795 LFSAWLR---LPS--E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 795 ~~~~~~~---~~~--~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
.+....+ ... . .......+.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||||||
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 363 AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred ccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 8753211 000 0 01222335578899999996 6666554 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+++.|++++++|.|||++|||++ .+...||++++|.+ |+++..++.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999999999999999999877999999999986 57788999999985 788888765
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=642.89 Aligned_cols=500 Identities=20% Similarity=0.226 Sum_probs=356.0
Q ss_pred HHHhhhhcCC-ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCC---------
Q 001507 6 LRQLRIYRGN-RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE--------- 75 (1065)
Q Consensus 6 ~~~~~~~~~~-~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~--------- 75 (1065)
++++++.++. ....++|+||||++++||+++|+|+||||||||+++|+|++.|. +|+|.++|..+..
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccc
Confidence 4556665542 22357999999999999999999999999999999999999775 8999999864311
Q ss_pred -CC------C-CceEEEEcccc--ccCCCCCHHHHHHHHhhcc-CCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhc
Q 001507 76 -FV------P-PRTSAYVSQQD--WQVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 144 (1065)
Q Consensus 76 -~~------~-~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1065)
.. . .+.++||+|++ .+++.+||+||+.++.+.. +. .
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~-~-------------------------------- 138 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA-S-------------------------------- 138 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCC-C--------------------------------
Confidence 00 1 24699999997 5788899999999875431 10 0
Q ss_pred cCCcchhHHHHHHHHhCCcc---cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHH
Q 001507 145 GGQKTSLVVEYIMKILGLDT---CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 221 (1065)
Q Consensus 145 ~~~~~~~~v~~~l~~lgL~~---~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~ 221 (1065)
..+...+++++++.+||++ ..+. .+.+|||||||||+||+||+.+|+||||||||+|||+.++..+++.++
T Consensus 139 -~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~ 212 (623)
T PRK10261 139 -REEAMVEAKRMLDQVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIK 212 (623)
T ss_pred -HHHHHHHHHHHHHHCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHH
Confidence 0011234788899999964 2343 445799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhcccc
Q 001507 222 HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWS 301 (1065)
Q Consensus 222 ~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~ 301 (1065)
+++++ .+++|++++|+..++.++||+|++|++|++++.|+++++.. .|.+....+++..+
T Consensus 213 ~l~~~-~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~~----------- 272 (623)
T PRK10261 213 VLQKE-MSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAAV----------- 272 (623)
T ss_pred HHHHh-cCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhcc-----------
Confidence 98754 35677789999999999999999999999999888755421 00000000000000
Q ss_pred CCCCCCCCCChhHHHHHHHhChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 001507 302 NPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKF 381 (1065)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~ 381 (1065)
+
T Consensus 273 ---------------------------------~---------------------------------------------- 273 (623)
T PRK10261 273 ---------------------------------P---------------------------------------------- 273 (623)
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHH
Q 001507 382 IQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWAL 461 (1065)
Q Consensus 382 ~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~ 461 (1065)
... .... +.
T Consensus 274 ---------------~~~----~~~~------------------------------------~~---------------- 282 (623)
T PRK10261 274 ---------------QLG----AMKG------------------------------------LD---------------- 282 (623)
T ss_pred ---------------ccc----cccc------------------------------------cc----------------
Confidence 000 0000 00
Q ss_pred HhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccC
Q 001507 462 SIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIIS 541 (1065)
Q Consensus 462 ~~p~~~i~~~~~~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~ 541 (1065)
.|
T Consensus 283 -~~----------------------------------------------------------------------------- 284 (623)
T PRK10261 283 -YP----------------------------------------------------------------------------- 284 (623)
T ss_pred -CC-----------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCcchhhHHhHhhcHHHHHHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHH
Q 001507 542 RDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALF 621 (1065)
Q Consensus 542 ~~~ip~~~~w~~~isp~~y~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~ 621 (1065)
...+ .. .
T Consensus 285 -~~~~------------------------------~~--~---------------------------------------- 291 (623)
T PRK10261 285 -RRFP------------------------------LI--S---------------------------------------- 291 (623)
T ss_pred -cccc------------------------------cc--c----------------------------------------
Confidence 0000 00 0
Q ss_pred HHHHHhcCCCCCcccccchhhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEeccc
Q 001507 622 TFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPV 701 (1065)
Q Consensus 622 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1065)
..... . .... .. .. . .+. ...-+..+|+++.+....
T Consensus 292 --------------~~~~~----~------~~~~--~~------~~----~-~~~-------~~~~L~~~~l~~~y~~~~ 327 (623)
T PRK10261 292 --------------LEHPA----K------QEPP--IE------QD----T-VVD-------GEPILQVRNLVTRFPLRS 327 (623)
T ss_pred --------------ccccc----c------cCcc--cc------cc----c-ccC-------CCceEEEeeeEEEEcCCC
Confidence 00000 0 0000 00 00 0 000 001256666665542100
Q ss_pred ccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceE
Q 001507 702 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARIS 775 (1065)
Q Consensus 702 ~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~ 775 (1065)
.. .......+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+
T Consensus 328 ~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i 403 (623)
T PRK10261 328 GL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDI 403 (623)
T ss_pred cc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCe
Confidence 00 0000013579999999999999999999999999999999999876 568999999987632 1235679
Q ss_pred EEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHH
Q 001507 776 GYCEQND--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAV 852 (1065)
Q Consensus 776 ~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~ 852 (1065)
+||+|++ .+++.+||.|++.+....+. ........+++.++++.++|. +..++.+ .+|||||||||+|||
T Consensus 404 ~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAr 476 (623)
T PRK10261 404 QFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIAR 476 (623)
T ss_pred EEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHH
Confidence 9999997 57889999999987643321 112234456788999999995 4555543 589999999999999
Q ss_pred HHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 853 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 853 ~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+.+|+||||||||+|||+.++..++++|++++++ |.|||++|||++ .+...+|++++|. .|++++.|+.
T Consensus 477 aL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~-~G~iv~~g~~ 548 (623)
T PRK10261 477 ALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMY-LGQIVEIGPR 548 (623)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999999999999999999765 899999999987 5778899999998 5899999875
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=627.97 Aligned_cols=464 Identities=20% Similarity=0.276 Sum_probs=346.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC----Cce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~----~~~ 81 (1065)
++++++.+++ +.+|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++..... ++.
T Consensus 14 ~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 14 ARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred EEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCC
Confidence 3455555542 46999999999999999999999999999999999999776 9999999987654321 245
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++.+||+||+.|+... .. ..+..++++++.+|
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~------~~--------------------------------~~~~~~~~~l~~~~ 129 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK------RQ--------------------------------ASMQKMKQLLAALG 129 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc------ch--------------------------------HHHHHHHHHHHHcC
Confidence 89999999889999999999874210 00 01123678899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++. +.+|++++|+.++
T Consensus 130 l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~ 202 (510)
T PRK15439 130 CQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKLPE 202 (510)
T ss_pred CCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 987776655 469999999999999999999999999999999999999999999998653 5677789999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHh
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHS 321 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1065)
+..+||+|++|++|++++.|+++++... +... .+..
T Consensus 203 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~---------------~~~~-----------------------------~~~~ 238 (510)
T PRK15439 203 IRQLADRISVMRDGTIALSGKTADLSTD---------------DIIQ-----------------------------AITP 238 (510)
T ss_pred HHHhCCEEEEEECCEEEEecChHHcCHH---------------HHHH-----------------------------HHhC
Confidence 9999999999999999998876543110 0000 0000
Q ss_pred ChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001507 322 YHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMH 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 401 (1065)
....
T Consensus 239 ----------------------------------------------------------------------------~~~~ 242 (510)
T PRK15439 239 ----------------------------------------------------------------------------AARE 242 (510)
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcc
Q 001507 402 HKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481 (1065)
Q Consensus 402 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~ 481 (1065)
......
T Consensus 243 -~~~~~~------------------------------------------------------------------------- 248 (510)
T PRK15439 243 -KSLSAS------------------------------------------------------------------------- 248 (510)
T ss_pred -cccccc-------------------------------------------------------------------------
Confidence 000000
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHH
Q 001507 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYA 561 (1065)
Q Consensus 482 g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~ 561 (1065)
..+ +
T Consensus 249 ----------------------------------------------------------------~~~--~---------- 252 (510)
T PRK15439 249 ----------------------------------------------------------------QKL--W---------- 252 (510)
T ss_pred ----------------------------------------------------------------ccc--c----------
Confidence 000 0
Q ss_pred HHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchh
Q 001507 562 QNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 641 (1065)
Q Consensus 562 ~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 641 (1065)
.
T Consensus 253 --------------------------------~----------------------------------------------- 253 (510)
T PRK15439 253 --------------------------------L----------------------------------------------- 253 (510)
T ss_pred --------------------------------c-----------------------------------------------
Confidence 0
Q ss_pred hhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeee
Q 001507 642 ELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~ 721 (1065)
..+. .... . +. .+.-+..+|++. .+|+|+||
T Consensus 254 ----------------~~~~----~~~~--~--~~-------~~~~l~~~~l~~------------------~~l~~isl 284 (510)
T PRK15439 254 ----------------ELPG----NRRQ--Q--AA-------GAPVLTVEDLTG------------------EGFRNISL 284 (510)
T ss_pred ----------------cccc----cccc--c--CC-------CCceEEEeCCCC------------------CCccceeE
Confidence 0000 0000 0 00 000133333320 15889999
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCC---CCCCCCCHHHHH
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESL 794 (1065)
Q Consensus 722 ~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l 794 (1065)
+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l 362 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNV 362 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHH
Confidence 999999999999999999999999999876 4689999999875421 1245689999984 478889999998
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHH
Q 001507 795 LFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873 (1065)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~ 873 (1065)
......+..........++.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 363 CALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 6421111110011122345678999999996 5666544 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 874 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
++..+.+.|++++++|.|||++|||++ .+.+.||++++|. +|+++..|.++.
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~~ 489 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEcccc
Confidence 999999999999878999999999987 5778899999998 589998887643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=677.35 Aligned_cols=216 Identities=20% Similarity=0.310 Sum_probs=176.8
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-------------
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------------- 753 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~------------- 753 (1065)
.+.|+|++|.++. .+++++|+|+||+|+||+++||+||||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~----------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS----------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCC----------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 5889999888742 12346999999999999999999999999999999999986631
Q ss_pred ---------------------------------------eeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCHH
Q 001507 754 ---------------------------------------IIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 754 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
+.+|+|++||.++.. ..+++.+|||+|++.+|. .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 148999999998643 567889999999999985 6999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
|||.|+. + +.+. +.++++++..++.+ -.|+.+|.. ...||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 1 2222 33667777766544 346666643 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCcHHHHHhcCeEEEEecC---cE-EEEeCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG---GE-LIYAGPL 925 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g---g~-~~~~g~~ 925 (1065)
||||+||+++.+.|++.|+++. .+++|+|+|+|+++ ..+.+|+|++|+++ |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 36899999999975 56789999999862 66 5578874
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=630.01 Aligned_cols=478 Identities=21% Similarity=0.285 Sum_probs=348.9
Q ss_pred HHHhhhhcCC-ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCCC-----
Q 001507 6 LRQLRIYRGN-RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV----- 77 (1065)
Q Consensus 6 ~~~~~~~~~~-~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~~----- 77 (1065)
++++++.++. ...+.+|+|+||++++||+++|+||||||||||+++|+|.++|. .+.+|+|.++|.++....
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 87 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLR 87 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHH
Confidence 4556665542 12357999999999999999999999999999999999999752 125899999998875431
Q ss_pred -C-CceEEEEccccc--cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHH
Q 001507 78 -P-PRTSAYVSQQDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 153 (1065)
Q Consensus 78 -~-~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 153 (1065)
. ++.++|++|++. +++.+||+|++.+...... + .. ......++
T Consensus 88 ~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~-~--~~------------------------------~~~~~~~~ 134 (529)
T PRK15134 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR-G--MR------------------------------REAARGEI 134 (529)
T ss_pred HHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc-C--CC------------------------------HHHHHHHH
Confidence 1 246999999974 5677899999876432110 0 00 00112347
Q ss_pred HHHHHHhCCccc---ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCE
Q 001507 154 EYIMKILGLDTC---ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 230 (1065)
Q Consensus 154 ~~~l~~lgL~~~---~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~ 230 (1065)
+++++.+||.+. .++. +.+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++. .+.
T Consensus 135 ~~~l~~~gl~~~~~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~ 208 (529)
T PRK15134 135 LNCLDRVGIRQAAKRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNM 208 (529)
T ss_pred HHHHHHCCCCChHHHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCC
Confidence 889999999752 3444 4569999999999999999999999999999999999999999999998754 356
Q ss_pred EEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCC
Q 001507 231 TVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYI 310 (1065)
Q Consensus 231 ~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (1065)
+|++++|+.+++..+||+|++|++|++++.|+++++... |..
T Consensus 209 tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~------------------------------ 250 (529)
T PRK15134 209 GLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA--------PTH------------------------------ 250 (529)
T ss_pred eEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhC--------CCC------------------------------
Confidence 777799999999999999999999999999876544210 000
Q ss_pred ChhHHHHHHHhChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 001507 311 SPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALI 390 (1065)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~ 390 (1065)
... +.+
T Consensus 251 ---~~~------------------------------------------------~~~----------------------- 256 (529)
T PRK15134 251 ---PYT------------------------------------------------QKL----------------------- 256 (529)
T ss_pred ---HHH------------------------------------------------HHH-----------------------
Confidence 000 000
Q ss_pred HHHHhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHH
Q 001507 391 TMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIES 470 (1065)
Q Consensus 391 ~g~~f~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~ 470 (1065)
+...
T Consensus 257 -----~~~~----------------------------------------------------------------------- 260 (529)
T PRK15134 257 -----LNSE----------------------------------------------------------------------- 260 (529)
T ss_pred -----HHhC-----------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhH
Q 001507 471 GFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWI 550 (1065)
Q Consensus 471 ~~~~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~ 550 (1065)
+
T Consensus 261 ---------------------------------------------------------------------------~---- 261 (529)
T PRK15134 261 ---------------------------------------------------------------------------P---- 261 (529)
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred HhHhhcHHHHHHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001507 551 WGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNP 630 (1065)
Q Consensus 551 w~~~isp~~y~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~ 630 (1065)
. .. .
T Consensus 262 ------------------------------~-----~~---------~-------------------------------- 265 (529)
T PRK15134 262 ------------------------------S-----GD---------P-------------------------------- 265 (529)
T ss_pred ------------------------------c-----cc---------c--------------------------------
Confidence 0 00 0
Q ss_pred CCCcccccchhhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccc
Q 001507 631 LGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 710 (1065)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1065)
. ... . ... .-+.++|+++.+...... .....
T Consensus 266 ----------------------------~------~~~---~---~~~-------~~l~~~~l~~~~~~~~~~--~~~~~ 296 (529)
T PRK15134 266 ----------------------------V------PLP---E---PAS-------PLLDVEQLQVAFPIRKGI--LKRTV 296 (529)
T ss_pred ----------------------------c------ccC---C---CCC-------CcccccCcEEEeecCccc--ccccc
Confidence 0 000 0 000 002223333322100000 00000
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCC--
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND-- 782 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~-- 782 (1065)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ .+|+|+++|.++... .+++.+||++|++
T Consensus 297 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 373 (529)
T PRK15134 297 DHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNS 373 (529)
T ss_pred ccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchh
Confidence 13569999999999999999999999999999999999864 479999999875321 1345699999996
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.+++.+||.||+.+....+.. ........++++++++.+++. +..+..+ ..|||||||||+|||||+.+|++|
T Consensus 374 ~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~ll 447 (529)
T PRK15134 374 SLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLI 447 (529)
T ss_pred hcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEE
Confidence 477889999999886533211 112233446688999999996 3555443 589999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.||++++|. +|+++..|+.
T Consensus 448 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 510 (529)
T PRK15134 448 ILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLR-QGEVVEQGDC 510 (529)
T ss_pred EeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999865 899999999986 5777899999998 4799988874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-67 Score=627.67 Aligned_cols=454 Identities=21% Similarity=0.264 Sum_probs=343.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCc--CCCCceeEEEEECC--------------
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNG-------------- 70 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~--~~~~~~~G~i~~~g-------------- 70 (1065)
+++++.++ ++.+|+|+||++++|++++|+|||||||||||++|+|.+ .|+ +|+|.++|
T Consensus 4 ~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 4 KNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred EEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccc
Confidence 34555443 246999999999999999999999999999999999986 454 89999972
Q ss_pred ---------ccCC-------C------CCCCceEEEEccc-cccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhh
Q 001507 71 ---------HGFK-------E------FVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 127 (1065)
Q Consensus 71 ---------~~~~-------~------~~~~~~~~yv~Q~-~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1065)
.++. . ...++.++|++|+ +.+++.+||+||+.|+....+...
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~--------------- 142 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG--------------- 142 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH---------------
Confidence 2210 0 0113468999997 677888999999988653221100
Q ss_pred CCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCC
Q 001507 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 207 (1065)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsg 207 (1065)
.+.+.+++++++.+||++..+..+ ..|||||||||+|||||+.+|++|||||||+|
T Consensus 143 -------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~ 198 (520)
T TIGR03269 143 -------------------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGT 198 (520)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCccc
Confidence 001234788999999987666544 46999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHH
Q 001507 208 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287 (1065)
Q Consensus 208 LD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l 287 (1065)
||+.++.++.+.|+++++.. +++|++++|+.+.+.++||+|++|++|++++.|+++++.+.+..
T Consensus 199 LD~~~~~~l~~~l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~--------------- 262 (520)
T TIGR03269 199 LDPQTAKLVHNALEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--------------- 262 (520)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh---------------
Confidence 99999999999999986543 56778899999999999999999999999887764332110000
Q ss_pred HHhcCccchhccccCCCCCCCCCChhHHHHHHHhChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHH
Q 001507 288 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQL 367 (1065)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 367 (1065)
.
T Consensus 263 ---------------------------------~---------------------------------------------- 263 (520)
T TIGR03269 263 ---------------------------------G---------------------------------------------- 263 (520)
T ss_pred ---------------------------------h----------------------------------------------
Confidence 0
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCc
Q 001507 368 LLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLH 447 (1065)
Q Consensus 368 ~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 447 (1065)
..
T Consensus 264 ------------------------------~~------------------------------------------------ 265 (520)
T TIGR03269 264 ------------------------------VS------------------------------------------------ 265 (520)
T ss_pred ------------------------------ch------------------------------------------------
Confidence 00
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH
Q 001507 448 FYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 527 (1065)
Q Consensus 448 ~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~ 527 (1065)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHH
Q 001507 528 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGV 607 (1065)
Q Consensus 528 ~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 607 (1065)
.+.
T Consensus 266 ----------------~~~------------------------------------------------------------- 268 (520)
T TIGR03269 266 ----------------EVE------------------------------------------------------------- 268 (520)
T ss_pred ----------------hhc-------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCcccee
Q 001507 608 GAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLS 687 (1065)
Q Consensus 608 g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1065)
. . .. . . . ...-
T Consensus 269 --------------------------~----~--------------------------~~-~--~---~-------~~~~ 279 (520)
T TIGR03269 269 --------------------------K----E--------------------------CE-V--E---V-------GEPI 279 (520)
T ss_pred --------------------------c----c--------------------------cc-c--C---C-------CCce
Confidence 0 0 00 0 0 0 0001
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEC-Ccc-
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYP- 765 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~-g~~- 765 (1065)
+.++|+++.+... ..+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 280 l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 280 IKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEW 349 (520)
T ss_pred EEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCcc
Confidence 3445554433100 0123569999999999999999999999999999999999876 468999996 532
Q ss_pred --CCc------ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-----cccCcc
Q 001507 766 --KRQ------ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-----LSGALI 832 (1065)
Q Consensus 766 --~~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~ 832 (1065)
+.. ...++.+||++|++.+++.+||.||+.+...+. .......++++++++.+++.+ ..++.
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 424 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY- 424 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-
Confidence 111 123456999999988889999999998754321 122333456788999999965 23443
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEE
Q 001507 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELL 911 (1065)
Q Consensus 833 ~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~ 911 (1065)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.||+++
T Consensus 425 ----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 425 ----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 3589999999999999999999999999999999999999999999999764 899999999987 5778899999
Q ss_pred EEecCcEEEEeCCC
Q 001507 912 FMKRGGELIYAGPL 925 (1065)
Q Consensus 912 ~l~~gg~~~~~g~~ 925 (1065)
+|. +|+++..|++
T Consensus 500 ~l~-~G~i~~~g~~ 512 (520)
T TIGR03269 500 LMR-DGKIVKIGDP 512 (520)
T ss_pred EEE-CCEEEEECCH
Confidence 998 5799888864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=622.61 Aligned_cols=469 Identities=20% Similarity=0.288 Sum_probs=346.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~ 82 (1065)
+++++.++ ++.+|+|+||++++|++++|+|||||||||||++|+|.++|. +.+|+|.++|.++.... .++.+
T Consensus 5 ~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 5 KGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCE
Confidence 34554443 246999999999999999999999999999999999998651 24999999998875432 13469
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+||+|++.+++.+||+||+.++..........+ ......+++++++.+||
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l 130 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQL 130 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCC
Confidence 999999988999999999988643210000000 00012247788999999
Q ss_pred cccc-cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 163 DTCA-DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 163 ~~~~-~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
.+.. ++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|++++|+.++
T Consensus 131 ~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~--~g~tviiitHd~~~ 203 (500)
T TIGR02633 131 DADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA--HGVACVYISHKLNE 203 (500)
T ss_pred CCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCcHHH
Confidence 7654 3333 46999999999999999999999999999999999999999999999864 35677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHh
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHS 321 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1065)
+..+||+|++|++|++++.|+.++... ....+
T Consensus 204 ~~~~~d~i~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~---- 235 (500)
T TIGR02633 204 VKAVCDTICVIRDGQHVATKDMSTMSE--------------------------------------------DDIIT---- 235 (500)
T ss_pred HHHhCCEEEEEeCCeEeeecCcccCCH--------------------------------------------HHHHH----
Confidence 999999999999999987764321100 00000
Q ss_pred ChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001507 322 YHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMH 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 401 (1065)
. +....
T Consensus 236 ---------~---------------------------------------------------------------~~~~~-- 241 (500)
T TIGR02633 236 ---------M---------------------------------------------------------------MVGRE-- 241 (500)
T ss_pred ---------H---------------------------------------------------------------HhCcc--
Confidence 0 00000
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcc
Q 001507 402 HKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481 (1065)
Q Consensus 402 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~ 481 (1065)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHH
Q 001507 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYA 561 (1065)
Q Consensus 482 g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~ 561 (1065)
.+.
T Consensus 242 ---------------------------------------------------------------~~~-------------- 244 (500)
T TIGR02633 242 ---------------------------------------------------------------ITS-------------- 244 (500)
T ss_pred ---------------------------------------------------------------ccc--------------
Confidence 000
Q ss_pred HHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchh
Q 001507 562 QNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 641 (1065)
Q Consensus 562 ~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 641 (1065)
.
T Consensus 245 ----------------------------------~--------------------------------------------- 245 (500)
T TIGR02633 245 ----------------------------------L--------------------------------------------- 245 (500)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred hhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeee
Q 001507 642 ELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~ 721 (1065)
.+. .. . +. ...-+.++|+++.+. ..+++.+|+|+||
T Consensus 246 -----------------~~~----~~----~--~~-------~~~~l~~~~l~~~~~----------~~~~~~~l~~is~ 281 (500)
T TIGR02633 246 -----------------YPH----EP----H--EI-------GDVILEARNLTCWDV----------INPHRKRVDDVSF 281 (500)
T ss_pred -----------------ccc----cc----c--CC-------CCceEEEeCCccccc----------cccccccccccee
Confidence 000 00 0 00 000133344432210 0013468999999
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCC---CCCCCCCHHHHH
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESL 794 (1065)
Q Consensus 722 ~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~---~~~~~ltv~e~l 794 (1065)
+|++||++||+||||||||||+++|+|..++ +.+|+|.++|+++.. ...++.+||++|+. .+++.+||+||+
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 9999999999999999999999999998752 258999999987632 22356789999995 578899999999
Q ss_pred HHHhh--ccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 795 LFSAW--LRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 795 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
.+... .............+.++++++.+++.+ ..+..+ ..|||||||||+|||+|+.+|++|||||||+|||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 87532 110001122333456789999999863 455543 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+.++..+++.|++++++|.|||++|||++ ++.+.||++++|. +|+++..++..
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 488 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIG-EGKLKGDFVNH 488 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccc
Confidence 99999999999999888999999999987 5778899999998 47888877543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=622.05 Aligned_cols=461 Identities=20% Similarity=0.290 Sum_probs=346.1
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~ 81 (1065)
++++++.+++ +.+|+|+||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.
T Consensus 7 ~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 7 FDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred EeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCC
Confidence 3455555432 46999999999999999999999999999999999998775 999999998764321 2457
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++.+||+||+.++........ .+ ..+....++++++.+|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~ 129 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGI-VN------------------------------RRLLNYEAREQLEHLG 129 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCC-CC------------------------------HHHHHHHHHHHHHHcC
Confidence 9999999988999999999988532100000 00 0011234778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ ..|||||||||+|||||+.+|+|++|||||+|||+.++..+.+.|+++++. +++|++++|+.++
T Consensus 130 l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiiitHd~~~ 202 (501)
T PRK11288 130 VDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GRVILYVSHRMEE 202 (501)
T ss_pred CCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHH
Confidence 986665544 469999999999999999999999999999999999999999999998642 5677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHh
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHS 321 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1065)
+..+||+|++|++|+++..++.... . ...+..+.
T Consensus 203 ~~~~~d~i~~l~~G~i~~~~~~~~~--------------~-----------------------------~~~~~~~~--- 236 (501)
T PRK11288 203 IFALCDAITVFKDGRYVATFDDMAQ--------------V-----------------------------DRDQLVQA--- 236 (501)
T ss_pred HHHhCCEEEEEECCEEEeecCcccc--------------C-----------------------------CHHHHHHH---
Confidence 9999999999999999865431000 0 00000000
Q ss_pred ChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001507 322 YHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMH 401 (1065)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~ 401 (1065)
+....
T Consensus 237 -------------------------------------------------------------------------~~~~~-- 241 (501)
T PRK11288 237 -------------------------------------------------------------------------MVGRE-- 241 (501)
T ss_pred -------------------------------------------------------------------------hcCCC--
Confidence 00000
Q ss_pred CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcc
Q 001507 402 HKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVI 481 (1065)
Q Consensus 402 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~ 481 (1065)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK11288 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHH
Q 001507 482 GYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYA 561 (1065)
Q Consensus 482 g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~ 561 (1065)
.
T Consensus 242 ---------------------------------------------------------------~---------------- 242 (501)
T PRK11288 242 ---------------------------------------------------------------I---------------- 242 (501)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred HHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchh
Q 001507 562 QNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 641 (1065)
Q Consensus 562 ~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 641 (1065)
. ...
T Consensus 243 --------------~------------------~~~-------------------------------------------- 246 (501)
T PRK11288 243 --------------G------------------DIY-------------------------------------------- 246 (501)
T ss_pred --------------c------------------ccc--------------------------------------------
Confidence 0 000
Q ss_pred hhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeee
Q 001507 642 ELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTG 721 (1065)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~ 721 (1065)
... .. . . .+..+.++|+++ +.+++|+|+
T Consensus 247 ----------------~~~-----~~----~---~-------~~~~l~~~~~~~-----------------~~~l~~isl 274 (501)
T PRK11288 247 ----------------GYR-----PR----P---L-------GEVRLRLDGLKG-----------------PGLREPISF 274 (501)
T ss_pred ----------------ccc-----cc----C---C-------CCcEEEEecccc-----------------CCcccceeE
Confidence 000 00 0 0 001233444321 148899999
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCC---CCCCCCCHHHHH
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESL 794 (1065)
Q Consensus 722 ~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~---~~~~~ltv~e~l 794 (1065)
+|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.++|++|++ .+++.+|+.||+
T Consensus 275 ~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l 352 (501)
T PRK11288 275 SVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNI 352 (501)
T ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHh
Confidence 999999999999999999999999999876 568999999987532 12345789999985 478889999999
Q ss_pred HHHhhccC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 795 LFSAWLRL-PSE--IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 795 ~~~~~~~~-~~~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.+...... ... ......++.++++++.+++. +..++.+ ..|||||||||+|||+|+.+|+||||||||+||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~L 427 (501)
T PRK11288 353 NISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427 (501)
T ss_pred ccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCC
Confidence 87532111 000 01222335678899999994 5666554 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|+.++..++++|++++++|.|||++|||++ .+.+.+|++++|. +|++++.|..++
T Consensus 428 D~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~-~g~i~~~~~~~~ 482 (501)
T PRK11288 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMR-EGRIAGELAREQ 482 (501)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEE-CCEEEEEEcccc
Confidence 999999999999999888999999999987 5778899999998 579999987754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=671.29 Aligned_cols=210 Identities=22% Similarity=0.271 Sum_probs=176.3
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 5888998887731 22469999999999999999999999999999999999877 5689999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccCcccCCC
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 836 (1065)
.. ..+++.+|||||++.+|.+ |++|||... ...+ ++.++++++..++.+. .|+.++. .
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~ 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLE-G 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccC-C
Confidence 53 5678899999999999976 999999531 1122 3457888888888654 2444443 2
Q ss_pred CCCCCHHHHHHHHHHHHHHhC-CCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 837 INGLSTEQRKRLTIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~-p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
..+||||||||+||||||+++ |+||+||||||+||+++...|++.|++.. +++|||+|+|+++ ....||+|++|+
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd- 1518 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD- 1518 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE-
Confidence 357999999999999999996 89999999999999999999999999864 5899999999975 567899999998
Q ss_pred CcEEEEeCCC
Q 001507 916 GGELIYAGPL 925 (1065)
Q Consensus 916 gg~~~~~g~~ 925 (1065)
+|+++..|++
T Consensus 1519 ~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 HGAVAEMGSP 1528 (1560)
T ss_pred CCEEEEECCH
Confidence 5899999986
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-65 Score=665.44 Aligned_cols=209 Identities=21% Similarity=0.276 Sum_probs=175.7
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.|+|+++.++. +.+.+|+||||+|+|||++||+|+||||||||+++|+|..+ .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5888998887732 23579999999999999999999999999999999999865 479999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccCcccCCC
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 836 (1065)
.. ..+|+.++||||++.+|++ |+||||.... . ..++.++++++..++.+. .|+.++. .
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 53 4578899999999999986 9999995321 1 123457888888888543 3444443 3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
..+||||||||+||||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||+|++|+ +
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~-~ 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIE-G 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999864 5899999999975 556799999998 5
Q ss_pred cEEEEeCCC
Q 001507 917 GELIYAGPL 925 (1065)
Q Consensus 917 g~~~~~g~~ 925 (1065)
|+++..|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 899999976
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=613.26 Aligned_cols=459 Identities=18% Similarity=0.251 Sum_probs=342.1
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceEE
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSA 83 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~~ 83 (1065)
++++.++ ++++|+|+||++++|++++|+||||||||||+++|+|.+.|+ +|+|.++|+++.... .++.++
T Consensus 3 nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 3 NISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred ceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEE
Confidence 4444443 246999999999999999999999999999999999998775 999999998765321 235699
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
|++|++.+++.+||+||+.++..... ....+ . .+....++++++.+||.
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~-----------------~-------------~~~~~~~~~~l~~~~l~ 125 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTK-GMFVD-----------------Q-------------DKMYRDTKAIFDELDID 125 (491)
T ss_pred EEecccccccCCCHHHHhhccccccc-ccccC-----------------H-------------HHHHHHHHHHHHHcCCC
Confidence 99999988899999999987531100 00000 0 00112477889999998
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++. +.+|++++|+.+++.
T Consensus 126 ~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvii~tH~~~~~~ 198 (491)
T PRK10982 126 IDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER--GCGIVYISHKMEEIF 198 (491)
T ss_pred CCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH
Confidence 7666554 469999999999999999999999999999999999999999999998643 566777999999999
Q ss_pred hhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhCh
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYH 323 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1065)
.+||++++|++|+++..|+++++.. .+..+.
T Consensus 199 ~~~d~i~~l~~G~i~~~~~~~~~~~--------------------------------------------~~~~~~----- 229 (491)
T PRK10982 199 QLCDEITILRDGQWIATQPLAGLTM--------------------------------------------DKIIAM----- 229 (491)
T ss_pred HhCCEEEEEECCEEEeecChhhCCH--------------------------------------------HHHHHH-----
Confidence 9999999999999998876432100 000000
Q ss_pred hhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001507 324 TGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHK 403 (1065)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~ 403 (1065)
+....
T Consensus 230 -----------------------------------------------------------------------~~~~~---- 234 (491)
T PRK10982 230 -----------------------------------------------------------------------MVGRS---- 234 (491)
T ss_pred -----------------------------------------------------------------------HhCCC----
Confidence 00000
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhcccc
Q 001507 404 TIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY 483 (1065)
Q Consensus 404 ~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g~ 483 (1065)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHHH
Q 001507 484 DPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQN 563 (1065)
Q Consensus 484 ~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~~ 563 (1065)
+.
T Consensus 235 -------------------------------------------------------------~~----------------- 236 (491)
T PRK10982 235 -------------------------------------------------------------LT----------------- 236 (491)
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred HHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh
Q 001507 564 AASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKEL 643 (1065)
Q Consensus 564 ~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 643 (1065)
.
T Consensus 237 ---------------------------------------------------------------------------~---- 237 (491)
T PRK10982 237 ---------------------------------------------------------------------------Q---- 237 (491)
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred hhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeeeEE
Q 001507 644 QERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAF 723 (1065)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i 723 (1065)
..+. .. . +. .+..+.++|+++. .+.+|+|+|+++
T Consensus 238 --------------~~~~----~~----~--~~-------~~~~i~~~~l~~~---------------~~~~l~~vsl~i 271 (491)
T PRK10982 238 --------------RFPD----KE----N--KP-------GEVILEVRNLTSL---------------RQPSIRDVSFDL 271 (491)
T ss_pred --------------cccc----cc----C--CC-------CCcEEEEeCcccc---------------cCcccceeeEEE
Confidence 0000 00 0 00 0112444554431 124899999999
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCC---CCCCCCCHHHHHHH
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLF 796 (1065)
Q Consensus 724 ~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~---~~~~~ltv~e~l~~ 796 (1065)
++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+. .+++.+|+.+|..+
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 9999999999999999999999999876 5689999999876431 2245589999985 36788888877433
Q ss_pred Hhh--ccCCCC-CCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCH
Q 001507 797 SAW--LRLPSE-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 797 ~~~--~~~~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~ 872 (1065)
... ...... .......+.++++++.+++. +..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~ 424 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccCh
Confidence 210 000001 11223345678889998885 3444433 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.++..+++.|+++.++|+|||++|||++ ++.+.||++++|.+ |+++..++..
T Consensus 425 ~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 425 GAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 9999999999999888999999999987 57788999999984 7888777553
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=533.02 Aligned_cols=482 Identities=21% Similarity=0.292 Sum_probs=366.8
Q ss_pred HHHhhhhcCC-ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCCC-----
Q 001507 6 LRQLRIYRGN-RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV----- 77 (1065)
Q Consensus 6 ~~~~~~~~~~-~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~~----- 77 (1065)
++++++.+.. ...+.++++|||++++||.++|+|.||||||-..+.+.|+++.. ...+|+|.|+|.++-...
T Consensus 9 v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr 88 (534)
T COG4172 9 IRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLR 88 (534)
T ss_pred eeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHh
Confidence 3555555542 34678999999999999999999999999999999999998752 235899999999864332
Q ss_pred --CCceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHH
Q 001507 78 --PPRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 153 (1065)
Q Consensus 78 --~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 153 (1065)
....|++++|+| .+-|-.|+...|.-..+++.. +.....+.++
T Consensus 89 ~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~ 135 (534)
T COG4172 89 GVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARA 135 (534)
T ss_pred hhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHH
Confidence 124799999998 456667887777655544321 1122344568
Q ss_pred HHHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEE
Q 001507 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233 (1065)
Q Consensus 154 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii 233 (1065)
.++|+..|+++....+ +.++.+|||||||||.||.||+.+|++|+-||||++||...+.+|.++|+++.++. +..++
T Consensus 136 lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~l 212 (534)
T COG4172 136 LELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAIL 212 (534)
T ss_pred HHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEE
Confidence 8899999998765443 56788999999999999999999999999999999999999999999999998775 56677
Q ss_pred EecCCchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChh
Q 001507 234 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPG 313 (1065)
Q Consensus 234 ~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (1065)
.||||..-+..++|+|+||.+|++++.|+.+++.. .|.+.. ...+.+.+
T Consensus 213 fITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~--------~PqHpY----Tr~Ll~ae------------------- 261 (534)
T COG4172 213 FITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA--------APQHPY----TRKLLAAE------------------- 261 (534)
T ss_pred EEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh--------CCCChH----HHHHHhcC-------------------
Confidence 79999999999999999999999999998765521 111100 00000000
Q ss_pred HHHHHHHhChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 001507 314 KFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMT 393 (1065)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~ 393 (1065)
|.
T Consensus 262 ---------------------P~--------------------------------------------------------- 263 (534)
T COG4172 262 ---------------------PS--------------------------------------------------------- 263 (534)
T ss_pred ---------------------CC---------------------------------------------------------
Confidence 00
Q ss_pred HhcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHH
Q 001507 394 VFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFW 473 (1065)
Q Consensus 394 ~f~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~ 473 (1065)
T Consensus 264 -------------------------------------------------------------------------------- 263 (534)
T COG4172 264 -------------------------------------------------------------------------------- 263 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhH
Q 001507 474 VAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGF 553 (1065)
Q Consensus 474 ~~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~ 553 (1065)
T Consensus 264 -------------------------------------------------------------------------------- 263 (534)
T COG4172 264 -------------------------------------------------------------------------------- 263 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcHHHHHHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001507 554 WVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGK 633 (1065)
Q Consensus 554 ~isp~~y~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~ 633 (1065)
+
T Consensus 264 ---------------------------g---------------------------------------------------- 264 (534)
T COG4172 264 ---------------------------G---------------------------------------------------- 264 (534)
T ss_pred ---------------------------C----------------------------------------------------
Confidence 0
Q ss_pred cccccchhhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccce
Q 001507 634 QQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRL 713 (1065)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1065)
. . .+. + +..++-+..+++...++....+-.. .....
T Consensus 265 --------------------------------~--~-~p~-~------~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~ 300 (534)
T COG4172 265 --------------------------------D--P-PPL-P------EDAPVLLEVEDLRVWFPIKGGFLRR--TVDHL 300 (534)
T ss_pred --------------------------------C--C-CCC-C------CCCCceEEecceEEEEecCCccccc--cchhe
Confidence 0 0 000 0 0001122222322222211111000 11235
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCC--CCC
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHS 785 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~--~~~ 785 (1065)
.++++||+++++||.+||+|.||||||||-.+|.++..+ +|+|.++|.++.. ..+++.+-.|+||| .+.
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 688999999999999999999999999999999998763 5999999998753 24567789999997 467
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
|.+||.+-+.-+.....+ ..+..++++++.+++++.||..-.-.+ .+.++|||||||++|||||+.+|++++|||
T Consensus 378 PRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~R----YPhEFSGGQRQRIAIARAliLkP~~i~LDE 452 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNR----YPHEFSGGQRQRIAIARALILKPELILLDE 452 (534)
T ss_pred cccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhc----CCcccCcchhhHHHHHHHHhcCCcEEEecC
Confidence 999999999877666654 456788899999999999997533221 236899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||.||..-+.+|+++|++|.++ |.+-++++||+. -+-.+||+++||. +|+|++.||.
T Consensus 453 PTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~GkiVE~G~~ 511 (534)
T COG4172 453 PTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DGKIVEQGPT 511 (534)
T ss_pred CchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CCEEeeeCCH
Confidence 99999999999999999999754 999999999986 4777899999998 5899999985
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=604.51 Aligned_cols=458 Identities=19% Similarity=0.253 Sum_probs=332.3
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.+++ ..+|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.+
T Consensus 6 ~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 6 ISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred EEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHh
Confidence 4566666543 35999999999999999999999999999999999998775 999999997654321 12458
Q ss_pred EEEcccccc--C------CCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHH
Q 001507 83 AYVSQQDWQ--V------AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154 (1065)
Q Consensus 83 ~yv~Q~~~~--~------~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (1065)
+|++|++.. + ..+||+|++.+.. ..+.+++
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~ 117 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV------------------------------------------KDPARCE 117 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch------------------------------------------hHHHHHH
Confidence 999998542 1 1457777664310 0012367
Q ss_pred HHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 155 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 155 ~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
++++.+||++..+..++ .|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.+|++
T Consensus 118 ~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii 190 (490)
T PRK10938 118 QLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVL 190 (490)
T ss_pred HHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEE
Confidence 88999999877766554 59999999999999999999999999999999999999999999998653 567777
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGK 314 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1065)
++|+.+++.++||+|++|++|++++.|+++++.. . +.+..+.
T Consensus 191 ~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~-------------~--~~~~~~~----------------------- 232 (490)
T PRK10938 191 VLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ-------------Q--ALVAQLA----------------------- 232 (490)
T ss_pred EeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc-------------c--hhhhhhh-----------------------
Confidence 9999999999999999999999999887544310 0 0000000
Q ss_pred HHHHHHhChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 001507 315 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTV 394 (1065)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~ 394 (1065)
. . +
T Consensus 233 ------~-------------------------------------------~------~---------------------- 235 (490)
T PRK10938 233 ------H-------------------------------------------S------E---------------------- 235 (490)
T ss_pred ------h-------------------------------------------h------h----------------------
Confidence 0 0 0
Q ss_pred hcccCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHH
Q 001507 395 FFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 474 (1065)
Q Consensus 395 f~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~ 474 (1065)
... ..
T Consensus 236 --~~~----~~--------------------------------------------------------------------- 240 (490)
T PRK10938 236 --QLE----GV--------------------------------------------------------------------- 240 (490)
T ss_pred --ccC----cc---------------------------------------------------------------------
Confidence 000 00
Q ss_pred hhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHh
Q 001507 475 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFW 554 (1065)
Q Consensus 475 ~i~y~l~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~ 554 (1065)
..|
T Consensus 241 ---------------------------------------------------------------------~~~-------- 243 (490)
T PRK10938 241 ---------------------------------------------------------------------QLP-------- 243 (490)
T ss_pred ---------------------------------------------------------------------ccC--------
Confidence 000
Q ss_pred hcHHHHHHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 001507 555 VSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQ 634 (1065)
Q Consensus 555 isp~~y~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~ 634 (1065)
.
T Consensus 244 --------------------------~----------------------------------------------------- 244 (490)
T PRK10938 244 --------------------------E----------------------------------------------------- 244 (490)
T ss_pred --------------------------c-----------------------------------------------------
Confidence 0
Q ss_pred ccccchhhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEeccccccccccccccee
Q 001507 635 QAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQ 714 (1065)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1065)
.. +. .. ... . +. ...-+.++|+++.+ +++.
T Consensus 245 ---~~-------------~~---~~------~~~---~--~~-------~~~~l~~~~l~~~~-------------~~~~ 274 (490)
T PRK10938 245 ---PD-------------EP---SA------RHA---L--PA-------NEPRIVLNNGVVSY-------------NDRP 274 (490)
T ss_pred ---cc-------------cc---cc------ccc---c--CC-------CCceEEEeceEEEE-------------CCee
Confidence 00 00 00 000 0 00 01124555655443 3356
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCCCCC--CC
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP--GL 788 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~~~~--~l 788 (1065)
+|+|+||++++||+++|+||||||||||+++|+|..+. ..+|+|.++|.+... ...++.+||++|++.+++ ..
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 353 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST 353 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC
Confidence 99999999999999999999999999999999997541 147999999976421 123467999999876543 35
Q ss_pred CHHHHHHHHhhc--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 789 TVLESLLFSAWL--RLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 789 tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
++++++.+.... ....... ....++++++++.+++.+ ..+..+ ..|||||||||+|||||+.+|++|||||
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 354 SVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred cHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 677766543210 1111111 223456789999999986 666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecCCcHHHHH-hcCeEEEEecCcEEEEeC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFE-SFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~~~l~~gg~~~~~g 923 (1065)
||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.+ |+++..-
T Consensus 428 Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 428 PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 999999999999999999998765 47999999986 4555 4899999985 6766543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-62 Score=585.22 Aligned_cols=190 Identities=20% Similarity=0.261 Sum_probs=155.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCC-CCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~-~~~~~lt 789 (1065)
+++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.+++. ..+||++|+. .+++.+|
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEeCchhhcCCCCC
Confidence 34579999999999999999999999999999999999876 56899998542 1489999986 6778899
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|+|++.+....... ... ....+++++.+++.+ ..+..+ ..|||||||||+|||+|+.+|++|||||||+
T Consensus 405 v~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 405 VWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred HHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999876432211 111 123456889999863 345443 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 924 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~ 924 (1065)
|||+.++..+.+.|+++. | |||++||+++ .+...||++++|.++|++. +.|+
T Consensus 475 ~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 475 DLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred CCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 999999999999999862 4 8999999986 5778899999998667766 4554
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=594.81 Aligned_cols=358 Identities=38% Similarity=0.644 Sum_probs=302.4
Q ss_pred cceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEEC
Q 001507 684 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYIS 762 (1065)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~~~G~i~i~ 762 (1065)
.++.+.|+++++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567889998877643211 4579999999999999999999999999999999999998753 689999999
Q ss_pred CccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCH
Q 001507 763 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 842 (1065)
Q Consensus 763 g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 842 (1065)
|++...+.+++.+|||+|||.++|++||+|++.|+|.+|+|...+.++++++|+++++.+||.+++|+++|....+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999888889999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001507 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922 (1065)
Q Consensus 843 Gqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 922 (1065)
||||||+||.+|+++|+||||||||||||+.++.+++++|+++|++|+|||+|+|||+.+++++||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 799999
Q ss_pred CCCCCchhHHHHHHHhcCCCCCCCCCCCcccceeeccCcc-ccccccccHHHHHHh------cHHHHHHH-HHHHhhCCC
Q 001507 923 GPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPV-EESRLGVDFAEIYRR------SNLFQRNR-ELVESLSKP 994 (1065)
Q Consensus 923 g~~~~~~~~~~~~~~~~~~~~~~~~~~npa~~~~~~~~~~-~~~~~~~~~~~~~~~------s~~~~~~~-~~~~~~~~~ 994 (1065)
|++ .++.+||+++ | ++||+++|||||++|+++.. ..+.. ....+.++. .+...+.. .....+...
T Consensus 253 G~~----~~~~~ff~~~-G-~~~P~~~Npadf~l~l~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-G-FPCPELENPADFLLDLLSVDSGTREL-EEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred cCH----HHHHHHHHhC-C-CCCCCcCChHHHHHHHHccCCCchhH-HhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 997 5789999999 4 46999999999999998842 11100 011111110 00000000 000001110
Q ss_pred CCCCcCcCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 001507 995 SPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRFAIKV 1063 (1065)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~~~~~~~~~~~~~~ 1063 (1065)
. + .+....++||.|+++|++|.+++.+|||.+.+.|+++++++|+++|++||+++++..+++.
T Consensus 326 ~----~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~ 388 (613)
T KOG0061|consen 326 K----K--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQN 388 (613)
T ss_pred c----c--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHH
Confidence 0 0 1111278999999999999999999999999999999999999999999999999888764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=581.72 Aligned_cols=189 Identities=19% Similarity=0.250 Sum_probs=154.6
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCC-CCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~-~~~~~ltv 790 (1065)
++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.+++. ..+||++|++ .+++.+||
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--------eEEEEEeCCccccCCCCcH
Confidence 4579999999999999999999999999999999999876 56899998542 1489999986 47788999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
.|++.+....... ... ...++++++.+++.+ ..+..+ ..|||||||||+|||+|+.+|++|||||||+|
T Consensus 404 ~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 404 WEEISGGLDIIQL---GKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred HHHHHhhcccccc---Ccc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 9999886422111 111 123457889999864 345443 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeCC
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 924 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~ 924 (1065)
||+.++..+.+.|+++. .|||++|||++ .+...||++++|.+||++. +.|+
T Consensus 474 LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 474 LDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 99999999999999872 48999999986 5677899999998656766 4454
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=574.58 Aligned_cols=198 Identities=18% Similarity=0.259 Sum_probs=161.9
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGF-------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEee-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 36666666543 34569999999999999999999999999999999999876 56899999873
Q ss_pred CcccccceEEEEcCCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHH
Q 001507 767 RQETFARISGYCEQNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTE 843 (1065)
Q Consensus 767 ~~~~~~~~~~~v~q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 843 (1065)
+.+||++|++. +++.+|++|++.+.. .. . ...+.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 35899999864 556799999986421 11 1 1124577899999984 4555543 589999
Q ss_pred HHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE-Ee
Q 001507 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YA 922 (1065)
Q Consensus 844 qrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~ 922 (1065)
||||++|||+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||++ .+...||++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999986 57778999999985 6776 77
Q ss_pred CCC
Q 001507 923 GPL 925 (1065)
Q Consensus 923 g~~ 925 (1065)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-60 Score=530.27 Aligned_cols=462 Identities=23% Similarity=0.357 Sum_probs=353.5
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC----Cce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~----~~~ 81 (1065)
+++++..+ ..+++|+||||++++||+++|+|.||||||||+|+|+|.+.|+ +|+|.++|++..-..+ ..-
T Consensus 11 ~~~i~K~F---ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 11 LRGISKSF---GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eecceEEc---CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCC
Confidence 34555544 3467999999999999999999999999999999999999886 9999999998754332 246
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
|+.|.|+..++|++||.|||.++......... ++.......+.++|+.+|
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~------------------------------id~~~m~~~A~~~l~~lg 134 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGL------------------------------IDRKAMRRRARELLARLG 134 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCc------------------------------cCHHHHHHHHHHHHHHcC
Confidence 89999999999999999999876543221000 111223445788999999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+....++.|++ ||+||||-|+||||+..+++|++||||||+|+...+..+++.++++.. .|..|+.|+|.++|
T Consensus 135 ~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~E 207 (500)
T COG1129 135 LDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDE 207 (500)
T ss_pred CCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHH
Confidence 96557788775 999999999999999999999999999999999999999999999975 47888889999999
Q ss_pred HHhhcccEEEecCCcEEEEcCc-chHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPR-VSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFH 320 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~-~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1065)
++++||+|.||.||+++..++. .+.- .++..
T Consensus 208 i~~i~DritVlRDG~~v~~~~~~~~~~--------------------------------------------~~~lv---- 239 (500)
T COG1129 208 VFEIADRITVLRDGRVVGTRPTAAETS--------------------------------------------EDELV---- 239 (500)
T ss_pred HHHhcCEEEEEeCCEEeeecccccCCC--------------------------------------------HHHHH----
Confidence 9999999999999999877652 2110 00000
Q ss_pred hChhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCC
Q 001507 321 SYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTM 400 (1065)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~ 400 (1065)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhc
Q 001507 401 HHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYV 480 (1065)
Q Consensus 401 ~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l 480 (1065)
-.|
T Consensus 240 -----------------------------------------------------------------------------~~M 242 (500)
T COG1129 240 -----------------------------------------------------------------------------RLM 242 (500)
T ss_pred -----------------------------------------------------------------------------HHh
Confidence 000
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHH
Q 001507 481 IGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMY 560 (1065)
Q Consensus 481 ~g~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y 560 (1065)
+|-.
T Consensus 243 vGr~---------------------------------------------------------------------------- 246 (500)
T COG1129 243 VGRE---------------------------------------------------------------------------- 246 (500)
T ss_pred hCcc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccch
Q 001507 561 AQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSK 640 (1065)
Q Consensus 561 ~~~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 640 (1065)
.+ ..
T Consensus 247 --------------~~------------------~~-------------------------------------------- 250 (500)
T COG1129 247 --------------LE------------------DL-------------------------------------------- 250 (500)
T ss_pred --------------hh------------------hh--------------------------------------------
Confidence 00 00
Q ss_pred hhhhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeee
Q 001507 641 KELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVT 720 (1065)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs 720 (1065)
.+. . . . + ...+..++.++++. ...++|+|
T Consensus 251 ------------------~~~----~-~---~--~------~~~~~~l~v~~l~~-----------------~~~~~dvS 279 (500)
T COG1129 251 ------------------FPE----P-P---E--E------GIGEPVLEVRNLSG-----------------GGKVRDVS 279 (500)
T ss_pred ------------------ccc----c-c---c--c------CCCCcEEEEecCCC-----------------CCceeCce
Confidence 000 0 0 0 0 00011233333321 12467999
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCC---CCCCCCCCHHHH
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQN---DIHSPGLTVLES 793 (1065)
Q Consensus 721 ~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~---~~~~~~ltv~e~ 793 (1065)
|++++||++||-|-=|||+|-|+++|.|..+ ..+|+|.+||+++... ..+.-++|||.| +-+++.+++.+|
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~N 357 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAEN 357 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHh
Confidence 9999999999999999999999999999665 4589999999986432 345569999987 567899999999
Q ss_pred HHHHhhccCC-C-CCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 794 LLFSAWLRLP-S-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 794 l~~~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
+.++...+.. . -......++.+++..+.+++.--.-. ..+..||||++|||.|||.|..+|+||||||||.|+|
T Consensus 358 i~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 358 ITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred eehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 9887332211 1 23445556678888998887532211 1246899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.-++.+|.++|++++++|++||++|-++. |+..+||||+||. +|+++-.=+..
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~~~ 486 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELDRE 486 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEeccc
Confidence 99999999999999999999999999986 8999999999998 57888654443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=562.76 Aligned_cols=197 Identities=23% Similarity=0.234 Sum_probs=162.9
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHH
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 794 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l 794 (1065)
.|+++||+|++||++||+||||||||||+++|+|..+ +.+|+|.++ ..++|++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 4899999999999999999999999999999999876 568999886 1489999998888899999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHH
Q 001507 795 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 874 (1065)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~ 874 (1065)
.+..... .. ...++++++.+++.+..++.+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 422 ~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 8752111 11 124678999999987766654 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCCc---hhHHHHHHHhc
Q 001507 875 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK---SCELIKYFEAV 939 (1065)
Q Consensus 875 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~---~~~~~~~~~~~ 939 (1065)
+..+.+.|++++++ |+|||++|||+. .+...+|++++|. | ++...|..... ...+..|+..+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999764 899999999986 4677899999996 4 67766654321 12344566666
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-59 Score=566.65 Aligned_cols=186 Identities=22% Similarity=0.350 Sum_probs=152.6
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCC--CCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND--IHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~--~~~~~l 788 (1065)
+++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.+++. ..+||++|+. .+.+..
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--------IKLGYFAQHQLEFLRADE 392 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--------EEEEEecCcchhhCCccc
Confidence 34679999999999999999999999999999999999876 56899999742 2589999974 345667
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
|+.+++.- .. + ......+.++++.+++.. ..+..+ ..|||||||||+||++|+.+|+||||||||
T Consensus 393 ~~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 393 SPLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred hHHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 88877631 11 1 112345788899999853 455443 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~~ 925 (1065)
+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|.+ |+++ +.|+.
T Consensus 459 ~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 459 NHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 999999999999999986 349999999986 57778999999985 7776 77865
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=563.73 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=154.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCC-CCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~-~~~~~lt 789 (1065)
+++.+|+|+||+|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.++ .+||++|+. .+++.+|
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKT 399 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc-------EEEEEeCcccccCCCCC
Confidence 34679999999999999999999999999999999999876 56899998 4321 489999975 5788999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+
T Consensus 400 v~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 400 VMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred HHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999998753211 001 1123467788888885 3445443 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe-cCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-RGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-~gg~~~~~g~~ 925 (1065)
|||+.+...+.+.|+++ +.|||++|||.. .+...||+++++. +|.-+.|.|+.
T Consensus 470 ~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 470 DLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred CCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 99999999999999875 459999999976 5667899999997 44444556653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-57 Score=546.81 Aligned_cols=368 Identities=29% Similarity=0.475 Sum_probs=290.6
Q ss_pred cceeEEEeceeEEEeccc----------------ccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 001507 684 QPLSMAFGNINYFVDVPV----------------ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~ 747 (1065)
.+++++|.+++|.++... ..++.++.++++.+|+|||+++++||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999876432 1122233455688999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 001507 748 GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827 (1065)
Q Consensus 748 g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 827 (1065)
|+.++...+|+|.+||++.... .++.+|||+|++.+++.+||+|++.|++.++.+.....+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876434689999999876433 345689999999999999999999998877766544555666788999999999999
Q ss_pred ccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 001507 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 907 (1065)
Q Consensus 828 ~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 907 (1065)
+|+.++....++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99998877778999999999999999999999999999999999999999999999998889999999999987788999
Q ss_pred CeEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCcccceeeccCccccc------ccc---ccHHHHHHhc
Q 001507 908 DELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEES------RLG---VDFAEIYRRS 978 (1065)
Q Consensus 908 d~~~~l~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~npa~~~~~~~~~~~~~------~~~---~~~~~~~~~s 978 (1065)
|++++|+ +|+++|.|+. +++.+||+++| .+||+++|||||++|+++..... ... ....+.|++.
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999998 5899999986 57999999994 47999999999999998753210 000 1122334321
Q ss_pred HHHHHHHHHHHhh--CC-CCC-----CCcCc-CCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 001507 979 NLFQRNRELVESL--SK-PSP-----SSKKL-NFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGS 1049 (1065)
Q Consensus 979 ~~~~~~~~~~~~~--~~-~~~-----~~~~~-~~~~~~~~~~~~q~~~l~~r~~~~~~R~~~~~~~r~~~~~~~~l~~g~ 1049 (1065)
. .++..+..+.. .. ... ..+.. .....+.++||+|+++|++|++++ |||+.+.++|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 00000 011235678999999999999998 99999999999999999999999
Q ss_pred HhccCCCCcccccc
Q 001507 1050 ICWKFGAKRFAIKV 1063 (1065)
Q Consensus 1050 ~~~~~~~~~~~~~~ 1063 (1065)
+||+++ ..++|.
T Consensus 426 lf~~~~--~~~~~~ 437 (659)
T PLN03211 426 MWWHSD--FRDVQD 437 (659)
T ss_pred HHhcCC--HHHHHH
Confidence 999985 455554
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=540.13 Aligned_cols=200 Identities=21% Similarity=0.307 Sum_probs=155.1
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 366677765441 23469999999999999999999999999999999999876 56899998752
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHH
Q 001507 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQR 845 (1065)
Q Consensus 767 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqr 845 (1065)
..+||++|+.. ..+++.++..+......+ ... .+.++++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999752 345666664322111111 111 245678899999863 44443 358999999
Q ss_pred HHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE-EeCC
Q 001507 846 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 924 (1065)
Q Consensus 846 qr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~-~~g~ 924 (1065)
|||+|||+|+.+|++|||||||+|||+.+...+.+.|++. +.|||++|||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 349999999986 47778999999984 7877 6775
Q ss_pred C
Q 001507 925 L 925 (1065)
Q Consensus 925 ~ 925 (1065)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-56 Score=516.19 Aligned_cols=230 Identities=26% Similarity=0.292 Sum_probs=174.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYV 85 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv 85 (1065)
+++++..+ ..+.+++|+|+++.+|+.++|||+|||||||||++|+|.+.|+ +|+|...+. -+++|+
T Consensus 6 ~~~ls~~~---g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l 71 (530)
T COG0488 6 LENLSLAY---GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYL 71 (530)
T ss_pred EeeeEEee---CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEe
Confidence 34555555 3457999999999999999999999999999999999999876 999987641 368999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHh-hhhccCCcchhHHHHHHHHhCCcc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK-SFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
+|++...+..||.+.+.-+..- .++...+.........-........+.. ...++.+..+.+++.+|..+|++.
T Consensus 72 ~Q~~~~~~~~tv~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIEGFGE-----LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred CCCCCcCCCccHHHHHHhhhHH-----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 9999988889999999765321 1111111111110000000011111111 123556888899999999999988
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
. ++.++ +||||||.||+||+||..+|++|+||||||+||..+..++-+.|++. .+ ++|+++||+.++.+
T Consensus 147 ~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~ 215 (530)
T COG0488 147 E-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDN 215 (530)
T ss_pred c-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHH
Confidence 7 66665 59999999999999999999999999999999999999999999864 34 67779999999999
Q ss_pred hcccEEEecCCcEE-EEcCcch
Q 001507 245 LFDDVILLSEGQIV-YQGPRVS 265 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~-~~G~~~~ 265 (1065)
.|++|+-++.|++. |.|+.+.
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HhhheEEecCCceeEecCCHHH
Confidence 99999999999875 6665443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-57 Score=546.26 Aligned_cols=346 Identities=34% Similarity=0.554 Sum_probs=292.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCccCCcccccceEEEEcCCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.++....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3578999999999999999999999999999999999987643 358999999998766667788999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCC-CCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|+||+.|++.++.+.....+++.++++++++.++|.+++|+.+|.+. .++|||||||||+||+||+.+|++|+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999998887666667777889999999999999999998653 56899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCCchhHHHHHHHhcCCCCCCCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPG 948 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1065)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||+++| .+||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 9999999999999999988899999999999878999999999998 5899999997 57899999984 579999
Q ss_pred CCcccceeeccCccccccc-----cccHHHHHHhcHHHHHHHHHHHhhCCCCC---CCcCcCCCCccCCCHHHHHHHHHH
Q 001507 949 YNPAAWMLEVTSPVEESRL-----GVDFAEIYRRSNLFQRNRELVESLSKPSP---SSKKLNFSTKYSQSFANQFLACLR 1020 (1065)
Q Consensus 949 ~npa~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 1020 (1065)
.|||||++|+++...+.+. ..++.+.|+.++.+++..+.......... .........++..+|+.|+++|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 9999999999875432211 12345556666555443333221111110 011111224578999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 001507 1021 KQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRFAIKV 1063 (1065)
Q Consensus 1021 r~~~~~~R~~~~~~~r~~~~~~~~l~~g~~~~~~~~~~~~~~~ 1063 (1065)
|++++.||||.++.+|+++++++|+++|++||++++++.+++.
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~ 391 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN 391 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999888764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=483.34 Aligned_cols=464 Identities=20% Similarity=0.309 Sum_probs=358.0
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC----CceEE
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSA 83 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~----~~~~~ 83 (1065)
+++..++ ...+++|||+++++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..+ +..||
T Consensus 9 ~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 9 GITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCc
Confidence 4444443 578999999999999999999999999999999999999887 9999999998754433 34689
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
+|.|+..+++++||.|||..+..... ..+ .+....+++++++.+.+||+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~-~~~------------------------------~~~~~~~~~i~~l~~~yGl~ 131 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSK-GGL------------------------------IDRRQARARIKELSERYGLP 131 (501)
T ss_pred EEeeccccccccchhhhhhhcCcccc-ccc------------------------------cCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988754210 000 01122345688999999999
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
-..|..|++ ||-||||||.|-+||+.+|++|+|||||+-|-|....++++.++++++. |.+|+.|||-..|+.
T Consensus 132 vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~ 204 (501)
T COG3845 132 VDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVM 204 (501)
T ss_pred CCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHH
Confidence 888888875 9999999999999999999999999999999999999999999999763 677778999999999
Q ss_pred hhcccEEEecCCcEEEEcCc-chHHHHHHhCCCCCCCCCChhHHHHHhcCccchhccccCCCCCCCCCChhHHHHHHHhC
Q 001507 244 ELFDDVILLSEGQIVYQGPR-VSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSY 322 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~-~~~~~~f~~lG~~~p~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1065)
++||++.||.+|+++..-++ .+. +..++++
T Consensus 205 ~iaDrvTVLR~Gkvvgt~~~~~~~--------------------------------------------t~~ela~----- 235 (501)
T COG3845 205 AIADRVTVLRRGKVVGTVDPVAET--------------------------------------------TEEELAE----- 235 (501)
T ss_pred HhhCeeEEEeCCeEEeeecCCCCC--------------------------------------------CHHHHHH-----
Confidence 99999999999998643321 000 0000000
Q ss_pred hhhhhhHHhhcCCccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001507 323 HTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 402 (1065)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~ 402 (1065)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcCcccchhHHHHHHHHHHhhHHHHHHHHHHhhhhhccc
Q 001507 403 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIG 482 (1065)
Q Consensus 403 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~~~~~~~~~p~~~i~~~~~~~i~y~l~g 482 (1065)
.|+|
T Consensus 236 ----------------------------------------------------------------------------lMvG 239 (501)
T COG3845 236 ----------------------------------------------------------------------------LMVG 239 (501)
T ss_pred ----------------------------------------------------------------------------HhcC
Confidence 0000
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhhccccCCCCcchhhHHhHhhcHHHHHH
Q 001507 483 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQ 562 (1065)
Q Consensus 483 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~~~~~l~~g~~i~~~~ip~~~~w~~~isp~~y~~ 562 (1065)
-.
T Consensus 240 ~~------------------------------------------------------------------------------ 241 (501)
T COG3845 240 RE------------------------------------------------------------------------------ 241 (501)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHhhcCCcccccCCCCCccchhHHhhhcCcCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhh
Q 001507 563 NAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 642 (1065)
Q Consensus 563 ~~~~~ne~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~g~ll~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 642 (1065)
+. .
T Consensus 242 ---------------------------v~-----------------------------------------------~--- 244 (501)
T COG3845 242 ---------------------------VV-----------------------------------------------L--- 244 (501)
T ss_pred ---------------------------cc-----------------------------------------------c---
Confidence 00 0
Q ss_pred hhhHhhhhcCcchhHhhhhhhhcccCccCcccccCCcccCccceeEEEeceeEEEecccccccccccccceeEeeeeeeE
Q 001507 643 LQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGA 722 (1065)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~ 722 (1065)
..+ .... .. ...-++.++++.... .....+++|||+
T Consensus 245 ---------------~~~----~~~~-------~p------g~~vL~V~~L~v~~~------------~~~~~v~~vs~~ 280 (501)
T COG3845 245 ---------------RVV----KPPS-------TP------GEVVLEVEDLSVKDR------------RGVTAVKDVSFE 280 (501)
T ss_pred ---------------ccc----cCCC-------CC------CCeEEEEeeeEeecC------------CCCceeeeeeeE
Confidence 000 0000 00 012355555543321 124678899999
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC----Ccc-cccceEEEEcCCC---CCCCCCCHHHHH
Q 001507 723 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQE-TFARISGYCEQND---IHSPGLTVLESL 794 (1065)
Q Consensus 723 i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~----~~~-~~~~~~~~v~q~~---~~~~~ltv~e~l 794 (1065)
+++||++||.|-.|-|-+.|+.+|+|..+ +.+|+|.++|+++ +.. .++.-+||||.|- .+.+.+|+.||+
T Consensus 281 Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~ 358 (501)
T COG3845 281 VRAGEIVGIAGVAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENL 358 (501)
T ss_pred EecCcEEEEEecCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHh
Confidence 99999999999999999999999999875 3469999999986 222 2344689999984 467899999999
Q ss_pred HHHhhccCC----CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 795 LFSAWLRLP----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 795 ~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.+...-+.| .-.......+...++++.++....... ...+.||||++||+-+||+|.++|++|+..+||.||
T Consensus 359 vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGL 434 (501)
T COG3845 359 VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434 (501)
T ss_pred hhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccc
Confidence 876432211 123445566778899999988633221 124689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|..+...|.+.|.+.+++|+.|++++-+++ +++..+|||.||. +|+++...++.+
T Consensus 435 DvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~-~Gri~~~~~~~~ 489 (501)
T COG3845 435 DVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY-EGRIVGIVPPEE 489 (501)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee-CCceeccccccc
Confidence 999999999999999999999999999998 8999999999998 589988877654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=380.02 Aligned_cols=211 Identities=27% Similarity=0.376 Sum_probs=186.0
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC----cccccceEEEEc
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGYCE 779 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~~~v~ 779 (1065)
++..+.+++..+|+|||++|++||+++|+|||||||||||+||.++.. +.+|+|.++|.++. ....|+.+|+|+
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 344455678899999999999999999999999999999999999887 57999999997653 235778899999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 780 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
|+..+||++||.||+..+...- ...+.++.++...++|+.+||.+.+|... .+|||||||||+|||||+.+|+
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred ccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCC
Confidence 9999999999999999875322 23456667778889999999999888764 5899999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
++++|||||+|||+...++.+.+++|+++|.|.||+||++.. ..+.+|||++|+ +|+++..|++
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p 220 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPP 220 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCH
Confidence 999999999999999999999999999999999999999874 667899999998 5899999876
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=379.96 Aligned_cols=229 Identities=27% Similarity=0.377 Sum_probs=192.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC----CCCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----VPPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~----~~~~~~ 82 (1065)
++++.+++ ...+|+|||+++++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+
T Consensus 6 ~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 6 KNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhc
Confidence 45555554 457999999999999999999999999999999999998776 99999999765422 246789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|+|+|+..+||++||.||+..+...-. .+...++++++.++|+.+||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~---------------------------------~~~k~eA~~~A~~lL~~VGL 126 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVK---------------------------------KLSKAEAREKALELLEKVGL 126 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHc---------------------------------CCCHHHHHHHHHHHHHHcCc
Confidence 999999999999999999998643210 01122334558889999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+.+|.. +.+|||||||||+|||||+.+|+++++|||||+|||+...++.+.+++++++ +.|.+++||.+.++
T Consensus 127 ~~ka~~y-----P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FA 199 (240)
T COG1126 127 ADKADAY-----PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFA 199 (240)
T ss_pred hhhhhhC-----ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHH
Confidence 9988765 4579999999999999999999999999999999999999999999999874 67788899999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 289 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~ 289 (1065)
.+.+|||++|++|++++.|+++++ |..|.+....+|+..
T Consensus 200 r~VadrviFmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 200 REVADRVIFMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred HHhhheEEEeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 999999999999999999998876 345666556666654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=405.65 Aligned_cols=203 Identities=21% Similarity=0.261 Sum_probs=156.7
Q ss_pred ceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 001507 685 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764 (1065)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~ 764 (1065)
+..+.++|+++.++ ++..++++++|-|.+++.+|++||||+||||||+++.|... +..|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~------------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS------------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSH 452 (614)
T ss_pred CCeEEEeccccCCC------------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccccc
Confidence 44566777766542 22368899999999999999999999999999999999877 46787754332
Q ss_pred cCCcccccceEEEEcCC--CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCH
Q 001507 765 PKRQETFARISGYCEQN--DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 842 (1065)
Q Consensus 765 ~~~~~~~~~~~~~v~q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 842 (1065)
. .+++.-|+ +.+.-..++.|+++=.. + ...+.+.+..++..+||....... ..++||+
T Consensus 453 ~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~ 512 (614)
T KOG0927|consen 453 N--------KLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV----PMSQLSD 512 (614)
T ss_pred c--------cchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----chhhccc
Confidence 1 13344443 33444667778775211 1 123445678899999998655443 2468999
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001507 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922 (1065)
Q Consensus 843 Gqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 922 (1065)
|||+||.+|+.++.+|.+|+|||||+|||..+...+-+.|.+. ..+||+++||.. -+-+.++++.+..+++...+.
T Consensus 513 Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~ 588 (614)
T KOG0927|consen 513 GQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWD 588 (614)
T ss_pred ccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecC
Confidence 9999999999999999999999999999999999999999874 568999999986 477788999999988888888
Q ss_pred CCC
Q 001507 923 GPL 925 (1065)
Q Consensus 923 g~~ 925 (1065)
|..
T Consensus 589 G~i 591 (614)
T KOG0927|consen 589 GDI 591 (614)
T ss_pred ccH
Confidence 863
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=370.76 Aligned_cols=219 Identities=26% Similarity=0.374 Sum_probs=190.3
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
+++++..++ ++.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||+++.+.. .++.|
T Consensus 4 ~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 4 FENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred eeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhh
Confidence 345665554 457999999999999999999999999999999999999886 999999999987654 57899
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|||-|+-.+||++||.|||.+...+.+- ++++.+.+++++|+.+||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w----------------------------------~k~~i~~r~~ELl~lvgL 123 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGW----------------------------------DKERIKKRADELLDLVGL 123 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCC----------------------------------CHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999886554321 112234569999999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
+.. ...+++++.|||||+|||.+||||+.+|+|+++|||+++|||.++..+.+.++++.++. ++||+.+|||.+|+
T Consensus 124 ~p~---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA 199 (309)
T COG1125 124 DPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEA 199 (309)
T ss_pred CHH---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHH
Confidence 752 12356778899999999999999999999999999999999999999999999998776 56677799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
..++|||++|++|+++..+++++++.
T Consensus 200 ~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 200 LKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=362.67 Aligned_cols=221 Identities=25% Similarity=0.359 Sum_probs=189.7
Q ss_pred ccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCC
Q 001507 708 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQN 781 (1065)
Q Consensus 708 ~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~ 781 (1065)
+.++++.|++||+++|++||+++||||||+||||||++|.|+.+ +.+|+|.++|.++.. ...++++|+++|+
T Consensus 16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~ 93 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93 (263)
T ss_pred eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeEEeec
Confidence 34578999999999999999999999999999999999999988 579999999988642 2456789999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 782 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
-.+|..+||+||+.|..+ .....+.+..++.+..-++.+||... ++.. +++||||++||++|||||+.+|+|
T Consensus 94 gALFssltV~eNVafplr--e~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAialdPel 166 (263)
T COG1127 94 GALFSSLTVFENVAFPLR--EHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAIALDPEL 166 (263)
T ss_pred cccccccchhHhhheehH--hhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHHhcCCCE
Confidence 999999999999998643 33345667777788888999999876 4443 368999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCCchh----HHHHH
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC----ELIKY 935 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~----~~~~~ 935 (1065)
||+||||+||||.++..+.++|+++.+. |.|+|++|||.+ +++..+|++++|. +|+++..|++++... -+.+|
T Consensus 167 l~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~-~gkv~~~Gt~~el~~sd~P~v~qf 244 (263)
T COG1127 167 LFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLA-DGKVIAEGTPEELLASDDPWVRQF 244 (263)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEe-CCEEEEeCCHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999876 999999999997 6899999999998 589999999753211 24556
Q ss_pred HHhc
Q 001507 936 FEAV 939 (1065)
Q Consensus 936 ~~~~ 939 (1065)
|...
T Consensus 245 ~~G~ 248 (263)
T COG1127 245 FNGI 248 (263)
T ss_pred hcCC
Confidence 6654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=377.43 Aligned_cols=224 Identities=27% Similarity=0.381 Sum_probs=193.8
Q ss_pred cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCceEEEEccccc
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDW 90 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~~~yv~Q~~~ 90 (1065)
....+|+|||++|++||+++|+|+||||||||++++.++-.|+ +|+|.++|.++.... .++.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3477999999999999999999999999999999999998876 999999998876543 3578999999999
Q ss_pred cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccc
Q 001507 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 170 (1065)
Q Consensus 91 ~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 170 (1065)
++...||+||+.|+++..+.. +.+.++++.++|+.+||++.+|..
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC-
Confidence 999999999999998765421 112345699999999999887754
Q ss_pred cCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEE
Q 001507 171 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250 (1065)
Q Consensus 171 g~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~ 250 (1065)
+.+|||||||||+|||||+.+|+||++|||||+|||.++..|.+.|+++.++. +.||+.++|.++.+.++||||.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 55799999999999999999999999999999999999999999999998875 6777789999999999999999
Q ss_pred EecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHhc
Q 001507 251 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 291 (1065)
Q Consensus 251 ~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~~ 291 (1065)
+|++|++++.|+..++ |..|.+.-..+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 34455555555655443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=374.69 Aligned_cols=203 Identities=26% Similarity=0.356 Sum_probs=183.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~~ 785 (1065)
...+|+|||++|++||++||+|+||||||||++++.++.. |.+|+|.+||.++.. ...|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4679999999999999999999999999999999999887 579999999976532 34678899999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
...||.||+.|...+.. .++++.+++|.++++.+||.+.++... .+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999877664 467888899999999999998887754 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||+|||++...|+++|+++.++ |.||+++||+++ -+.+.|||+.+|+ .|+++..|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEEEeccHH
Confidence 99999999999999999999765 999999999987 4778899999998 58999999864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=369.11 Aligned_cols=218 Identities=26% Similarity=0.404 Sum_probs=183.7
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.++++|+++.+ ++.++|+||||++++|++++|+||||||||||+++|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y-------------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSY-------------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEE-------------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 35666776655 33369999999999999999999999999999999999877 5799999999987
Q ss_pred CcccccceEEEEcCCCCC--CCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHH
Q 001507 767 RQETFARISGYCEQNDIH--SPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 843 (1065)
Q Consensus 767 ~~~~~~~~~~~v~q~~~~--~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 843 (1065)
....-+..+|||||...+ -..+||+|-+..+..-+.. .....+.+++.++++|+.+|+.+++++.++ .||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 654445789999996422 2347999999886432221 111223446789999999999999999875 79999
Q ss_pred HHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 844 qrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|+|||.|||||+++|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+++.|+ +++.+.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 5889999999996 5899999
Q ss_pred CCCC
Q 001507 924 PLGS 927 (1065)
Q Consensus 924 ~~~~ 927 (1065)
++.+
T Consensus 221 ~~~~ 224 (254)
T COG1121 221 PPEE 224 (254)
T ss_pred Chhh
Confidence 8854
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=376.24 Aligned_cols=209 Identities=27% Similarity=0.409 Sum_probs=182.7
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~ 786 (1065)
++++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++.. +.+.+.+|||||......
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 457899999999999999999999999999999999999877 568999999998643 567789999999998888
Q ss_pred CCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 787 GLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
.+||+|.+.++..-+.. .....+++.+.++++++.+++.+++++.+ ..|||||||||.|||||+++|+||+|||
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~iArALaQ~~~iLLLDE 164 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVLIARALAQETPILLLDE 164 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHHHHHHHhcCCCEEEeCC
Confidence 99999999987432111 11123445567999999999999999876 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|||+||...+.+++++++++++ +|+|||++.||++ ....+||++++|+ +|+++..|++.+
T Consensus 165 PTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~a~G~p~e 225 (258)
T COG1120 165 PTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIVAQGTPEE 225 (258)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEeecCcch
Confidence 9999999999999999999984 5999999999998 4788999999998 589999998753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=365.72 Aligned_cols=194 Identities=25% Similarity=0.379 Sum_probs=173.8
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lt 789 (1065)
++...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.++. .....+|||+|++.++|.+|
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCcccchhh
Confidence 345789999999999999999999999999999999999987 56999999999873 23456899999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|+||+.|+...+. ...++..++++++++.+||.+..+... ++|||||||||+|||||+.+|+||+||||+++
T Consensus 89 v~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 89 VLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred HHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 9999999877653 344566678999999999999998764 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 870 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
||..++..+++.|.++.++ ++||+++|||.+ |...++|||++|.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999999999754 899999999997 677889999999853
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=359.64 Aligned_cols=208 Identities=25% Similarity=0.348 Sum_probs=186.9
Q ss_pred cccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC
Q 001507 707 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI 783 (1065)
Q Consensus 707 ~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~ 783 (1065)
++.++++.+++|+|++|++||+++++|||||||||+|++|.++.. +++|+|++||+++.. ..+|+.+|||-|.-.
T Consensus 8 sk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqig 85 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIG 85 (309)
T ss_pred ehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcc
Confidence 344567899999999999999999999999999999999999987 679999999998754 467899999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
+||++||.||+.+-..+. .+++++.+++++++++.+||.. +.++. +.+|||||+|||.+||||+.+|+||
T Consensus 86 LFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 86 LFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred cCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeE
Confidence 999999999999876554 4567888899999999999974 66654 3689999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+||||+++|||-++..+++.++++.++ |+|||++|||.+ |.+.++||+++|+ +|+++..+++.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 999999999999999999999999765 999999999997 7899999999998 58999888764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=388.94 Aligned_cols=206 Identities=32% Similarity=0.459 Sum_probs=184.3
Q ss_pred cccc-ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCC
Q 001507 708 VLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIH 784 (1065)
Q Consensus 708 ~~~~-~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~ 784 (1065)
+.++ ++.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+
T Consensus 12 k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~ 89 (293)
T COG1131 12 KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89 (293)
T ss_pred EEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCCC
Confidence 3456 5899999999999999999999999999999999999987 579999999987654 4567889999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
++.+||+|++.|.+.++.+.. ....++++++++.++|.+..++.+ ++||+||||||+||+||+++|++||||
T Consensus 90 ~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 90 YPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred CccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999999999999886542 445567999999999998555443 589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+||||.++..+++.|++++++| +||+++||+++ ++...||+|++|+ +|++++.|++
T Consensus 162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~g~~ 221 (293)
T COG1131 162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAEGTP 221 (293)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 9999999999999999999999887 89999999997 6888899999998 5899999975
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=390.50 Aligned_cols=231 Identities=29% Similarity=0.404 Sum_probs=199.2
Q ss_pred HHHHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-CceE
Q 001507 4 ALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTS 82 (1065)
Q Consensus 4 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~-~~~~ 82 (1065)
..+++++..++... +|+|+|++|++||+++|+|||||||||||++|||+..++ +|+|.++|.++++..+ +|.+
T Consensus 4 i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 4 LELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCE
Confidence 34566666665432 899999999999999999999999999999999999876 9999999999988654 5889
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
++|+|+..++|++||+|||.|+++.++.. +.+.+.+|+++.+.|+|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l 123 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGL 123 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998765421 12234569999999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..|+. +++|||||||||||||||+.+|++++||||+|.||+..+..+...|+++.+.. ++|++.+|||..|+
T Consensus 124 ~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EA 197 (338)
T COG3839 124 EHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEA 197 (338)
T ss_pred hhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHH
Confidence 9988765 45799999999999999999999999999999999999999999999987665 56666799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 288 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~ 288 (1065)
..++|||++|++|++...|++.++. ..|.+.-.|.|+-
T Consensus 198 mtladri~Vm~~G~i~Q~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 198 MTLADRIVVMNDGRIQQVGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred HhhCCEEEEEeCCeeeecCChHHHh--------hCccchhhhhhcC
Confidence 9999999999999999999999984 4566655565543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=356.40 Aligned_cols=210 Identities=28% Similarity=0.393 Sum_probs=180.9
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIH 784 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~ 784 (1065)
+++++|+|||++|++||++||+|||||||||||++|.|... +.+|+|.+||.++.. +.+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 57899999999999999999999999999999999999776 568999999976532 3467789999999999
Q ss_pred CCCCCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 785 SPGLTVLESLLFSAWLRLP-----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
.+.++|.+|+..+..-+.+ -....++.+..+-++++.+|+.+.+..+. ..|||||+|||+|||||+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccCCcchhHHHHHHHHHhcCCC
Confidence 9999999999876432221 12233455566788999999988877665 4799999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCCch
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKS 929 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~ 929 (1065)
|++.|||+++|||.++..||+.|+++++ .|.|||++.|+.+. ..++|||++-|+ .|+++|+||..+..
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~-~G~ivfDg~~~el~ 236 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK-AGRIVFDGPASELT 236 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec-CCcEEEeCChhhhh
Confidence 9999999999999999999999999975 49999999999885 678999999998 58999999986533
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=367.81 Aligned_cols=217 Identities=29% Similarity=0.418 Sum_probs=185.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCc---cCCCC-CCCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEF-VPPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~---~~~~~-~~~~~~ 82 (1065)
++++... ....+++|||++|+.||+++++|||||||||||++|+|+..|+ .|.|.+||+ +.+.. ...|+|
T Consensus 6 ~~~~~~~---~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~V 79 (345)
T COG1118 6 NNVKKRF---GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKV 79 (345)
T ss_pred hhhhhhc---ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcce
Confidence 4444443 3456899999999999999999999999999999999999887 999999999 55543 234789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|||+|+..+|+++||.|||.|+.+++.. +. +....+.+++++|+.+.|
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~--~p------------------------------~~~~~r~rv~elL~lvqL 127 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKE--RP------------------------------SEAEIRARVEELLRLVQL 127 (345)
T ss_pred eEEEechhhcccchHHhhhhhccccccc--CC------------------------------ChhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999876511 10 112234568999999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..+ +++.+|||||||||+|||||+..|+||+||||+++||++.+.++-++|+++....+.++ +.+|||.+|+
T Consensus 128 ~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~tt-vfVTHD~eea 201 (345)
T COG1118 128 EGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTT-VFVTHDQEEA 201 (345)
T ss_pred cchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceE-EEEeCCHHHH
Confidence 88765 55678999999999999999999999999999999999999999999999877655555 4589999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++||||++|++|+|...||+.++.
T Consensus 202 ~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 202 LELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HhhcceEEEecCCeeeeeCCHHHHh
Confidence 9999999999999999999999884
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=357.77 Aligned_cols=193 Identities=30% Similarity=0.460 Sum_probs=167.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~ 785 (1065)
..+|++||++|++||++||||||||||||||++|.|... +++|.|.++|.++.. ..+++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 689999999999999999999999999999999999887 578999999977542 12456799999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcccc-CcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
|++||+||+.+...+.... .....+.++++++.+||.+..+ .. +.+|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999876554322 2245667889999999986665 33 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
|||.+||+.+...|++++++++++ |+|||++|||+ ++...|||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999765 99999999996 47789999999986 55
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=365.26 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=187.7
Q ss_pred ccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc---cCCc-ccccceEEEEcCCCC
Q 001507 708 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-ETFARISGYCEQNDI 783 (1065)
Q Consensus 708 ~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~~~v~q~~~ 783 (1065)
+..+...+++|||+.|+.||++|++|||||||||||++|+|+.. +..|.|.+||. +.+. ....|.+|||+|+..
T Consensus 10 ~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 10 KRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred hhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 34456778999999999999999999999999999999999988 67999999998 5443 345678999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+|++|||.+|+.|+.+.+ ....+..+.+.+++++|+.+.|.++++... .+|||||||||++||||+.+|++|+|
T Consensus 88 LF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 88 LFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred hcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEee
Confidence 999999999999998776 334456777889999999999999998764 58999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||+++||..-+..+...|+++.++ |.|++++|||+. ++++.+|||++|++ |+|+..||+.
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999999876 999999999987 89999999999984 8999999874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=389.61 Aligned_cols=232 Identities=31% Similarity=0.430 Sum_probs=200.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-CceEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~-~~~~~y 84 (1065)
+++++..++ ...+++|+|++|++||+++++|||||||||||++|+|+..|+ +|+|.++|+++....+ +|.+++
T Consensus 8 i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 8 IRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred EEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccce
Confidence 345555554 567999999999999999999999999999999999999886 9999999999988754 578999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|+|+-.+||++||+||+.|+++.+.... +.+.+++++++|+.++|++
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~ 128 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEG 128 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchh
Confidence 9999999999999999999987432110 0123456999999999998
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..+. ++.+|||||||||+|||||+.+|+|||||||.|+||..-+.++...++++.++. +.|.|.+|||.+|+..
T Consensus 129 ~~~R-----~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~ 202 (352)
T COG3842 129 FADR-----KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALA 202 (352)
T ss_pred hhhh-----ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhh
Confidence 7765 456799999999999999999999999999999999999999999999998876 6666779999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHh
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 290 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~ 290 (1065)
++|||++|++|+|...|+++++ |..|.+.-.|+|+-+.
T Consensus 203 msDrI~Vm~~G~I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 203 MSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred hccceEEccCCceeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999999999999999998 4567766677776543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=360.06 Aligned_cols=200 Identities=24% Similarity=0.344 Sum_probs=173.3
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEcc
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 87 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q 87 (1065)
+++..++. ..+|+|||++|++||+++|+||||||||||||+|+|+..|. +|+|.++|.++ ..+.+.++||+|
T Consensus 8 ~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ 79 (248)
T COG1116 8 GVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQ 79 (248)
T ss_pred eeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEec
Confidence 44444433 67999999999999999999999999999999999999876 99999999887 345567999999
Q ss_pred ccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccc
Q 001507 88 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 167 (1065)
Q Consensus 88 ~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 167 (1065)
++.++|-.||+||+.|+....+... .+.+.+++++|+.+||.+..|
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~ 125 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFED 125 (248)
T ss_pred cCcccchhhHHhhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhh
Confidence 9999999999999999877653111 112235889999999998876
Q ss_pred ccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcc
Q 001507 168 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247 (1065)
Q Consensus 168 t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D 247 (1065)
. ++++|||||||||+|||||+.+|+||+||||+++||+.|+.++.+.|.++.++ .+.||+.+||+.+|+..++|
T Consensus 126 ~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~Lsd 199 (248)
T COG1116 126 K-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLAD 199 (248)
T ss_pred c-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhC
Confidence 5 45679999999999999999999999999999999999999999999988765 45777789999999999999
Q ss_pred cEEEecCC
Q 001507 248 DVILLSEG 255 (1065)
Q Consensus 248 ~v~~l~~G 255 (1065)
||++|+++
T Consensus 200 Rivvl~~~ 207 (248)
T COG1116 200 RVVVLSNR 207 (248)
T ss_pred EEEEecCC
Confidence 99999983
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=342.21 Aligned_cols=201 Identities=27% Similarity=0.379 Sum_probs=183.2
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC--cccccceEEEEcCCCCCCCCCCHH
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--QETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~--~~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
++++||||+++.||++||+|||||||||+|++|+++.. |.+|.|++||.+.. +...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999987 57999999998753 345788899999888899999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
|||.|.+++... ...+.+++.+++.+.++|.++.|++++ ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~~l---~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNGL---SRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhhh---hhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 999999987643 345667889999999999999999875 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
..+.+.+.+.++++.++|++||++||.++ ++...||+++++.+ |++++.|+..
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 99999999999999888999999999986 78889999999985 8999999863
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=351.24 Aligned_cols=212 Identities=25% Similarity=0.352 Sum_probs=181.7
Q ss_pred ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCceEEEEcccc
Q 001507 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD 89 (1065)
Q Consensus 16 ~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~~~yv~Q~~ 89 (1065)
...+.|++|||++|++||+++|+|||||||||||+.|.|++.|+ +|+|.++|.++.... .++++|+++|+-
T Consensus 18 fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 18 FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 34568999999999999999999999999999999999999887 999999999876542 346799999999
Q ss_pred ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccccc
Q 001507 90 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 169 (1065)
Q Consensus 90 ~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 169 (1065)
.+|..+||+||+.|..+-+.. .|+. ..++.+..-|+..||...
T Consensus 95 ALFssltV~eNVafplre~~~-------------------lp~~--------------~i~~lv~~KL~~VGL~~~---- 137 (263)
T COG1127 95 ALFSSLTVFENVAFPLREHTK-------------------LPES--------------LIRELVLMKLELVGLRGA---- 137 (263)
T ss_pred ccccccchhHhhheehHhhcc-------------------CCHH--------------HHHHHHHHHHHhcCCChh----
Confidence 999999999999997653211 1111 123346667888999865
Q ss_pred ccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccE
Q 001507 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 170 vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v 249 (1065)
+.+.++..||||++||++||||++.+|+++++||||+||||.++..+-++++++.+.. +.|++++||+.++++..||++
T Consensus 138 ~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceE
Confidence 2345566799999999999999999999999999999999999999999999998876 456666999999999999999
Q ss_pred EEecCCcEEEEcCcchHHH
Q 001507 250 ILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 250 ~~l~~G~i~~~G~~~~~~~ 268 (1065)
++|.+|+|+..|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=368.69 Aligned_cols=219 Identities=32% Similarity=0.435 Sum_probs=185.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++ ++.+|+|+||++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+.. ..+.++
T Consensus 6 ~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 6 ENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred EEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEE
Confidence 45666664 457999999999999999999999999999999999999876 999999999887653 457899
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
||||.+.....+||+|-+.++..-+. ..+. .. ..+.++.+++.|+.+|+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~--~~~~-------------~~---------------~~~D~~~v~~aL~~~~~~ 129 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHL--GLFG-------------RP---------------SKEDEEIVEEALELLGLE 129 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCccc--cccc-------------CC---------------CHhHHHHHHHHHHHhCcH
Confidence 99999887889999999988643210 0000 00 011123588999999999
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+.++..+. .|||||||||.|||||+++|+||+||||||+||...+.++++.+++++++ .+.||+++.||.+.+.
T Consensus 130 ~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~-~~~tvv~vlHDlN~A~ 203 (258)
T COG1120 130 HLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE-KGLTVVMVLHDLNLAA 203 (258)
T ss_pred HHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHH
Confidence 99887664 59999999999999999999999999999999999999999999999875 4667777899999999
Q ss_pred hhcccEEEecCCcEEEEcCcchHH
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+||++++|++|+++.+|++++++
T Consensus 204 ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 204 RYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999998775
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=378.99 Aligned_cols=205 Identities=27% Similarity=0.378 Sum_probs=186.4
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++..+|+|+|++|++||+++|+|||||||||||++|+|+.. +.+|+|.|+|.+++. ....|.+|+|+|+..++|+|
T Consensus 13 yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhm 90 (338)
T COG3839 13 FGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHM 90 (338)
T ss_pred cCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCC
Confidence 444449999999999999999999999999999999999987 679999999998876 45568899999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||+||+.|+.+++. .++++.+++|+++.+.|++.++.++.. ++|||||||||+|||||+++|++++||||.|
T Consensus 91 tV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 91 TVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred cHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 99999999987763 356777889999999999999999864 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+||...+..+...|+++.++ |.|+|.+|||.. |.+.++||+++|. +|++...|++.
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~p~ 219 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGTPL 219 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCChH
Confidence 99999999999999999765 899999999975 8889999999998 68999999874
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=344.16 Aligned_cols=231 Identities=26% Similarity=0.413 Sum_probs=188.2
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCC--CCceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~--~~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
+++++++++. +.+|+|||+.|+++++||+||||||||||||+++...... ....+|+|.++|+++.+. ..
T Consensus 10 ~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 10 VRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred ecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 5688888874 4699999999999999999999999999999999876443 346899999999987654 24
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++++|+|+|.|..|| +||+||+.|+.++++... + +.++.|+..|+
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~--~--------------------------------~ldeiVe~sLk 131 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD--K--------------------------------ELDEIVESSLK 131 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccch--H--------------------------------HHHHHHHHHHH
Confidence 688999999999898 899999999988776432 1 11223555555
Q ss_pred HhCC-cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 159 ILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 159 ~lgL-~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
.-.| ++.+|.+ ++...+|||||+||++|||||+-+|+|||||||||+|||.++..|-+++.++.+ .-||+++||
T Consensus 132 ~AaLWdEVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTH 206 (253)
T COG1117 132 KAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTH 206 (253)
T ss_pred HhHhHHHhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeC
Confidence 5555 2233333 223457999999999999999999999999999999999999999999999864 457777999
Q ss_pred CchHHHhhcccEEEecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHH
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l 287 (1065)
++..+.+..|+..++..|+++++|+.+++ |..|.++.+.||+
T Consensus 207 nmqQAaRvSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 207 NMQQAARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred CHHHHHHHhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999999999999999887 3456666565554
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=340.73 Aligned_cols=216 Identities=28% Similarity=0.344 Sum_probs=188.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~y 84 (1065)
++++..++. ..++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+.... ..++.+|.
T Consensus 5 ~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 5 TDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcce
Confidence 344444443 456999999999999999999999999999999999999887 99999999886544 34688999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++.+..++..+|++|||.|.+++.+.. ..+.+.+++++.+.|+|.+
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~ 125 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLE 125 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHH
Confidence 998888899999999999988765421 1233456899999999999
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
+.|+.+|+ +|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .+.+|+..+|.++|+..
T Consensus 126 ~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~Evea 198 (245)
T COG4555 126 YLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEA 198 (245)
T ss_pred HHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHH
Confidence 99998875 999999999999999999999999999999999999999999998754 36778889999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+||+|++|++|++++.|+.+++..
T Consensus 199 lCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 199 LCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999987754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=363.00 Aligned_cols=218 Identities=28% Similarity=0.440 Sum_probs=184.1
Q ss_pred HHHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEE
Q 001507 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAY 84 (1065)
Q Consensus 5 ~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~y 84 (1065)
.++++++.+++. ++|+||||++++|++++|+||||||||||+|+|+|++.|. +|+|.++|.+......+.+|||
T Consensus 6 ~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 6 EVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred EEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEE
Confidence 356778877643 4999999999999999999999999999999999999876 9999999988766655678999
Q ss_pred Eccc---cccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 85 VSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 85 v~Q~---~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
|||. ||-|| .||+|.+..+..-+. .++... ..+..+.++++|+.+|
T Consensus 80 VPQ~~~~d~~fP-~tV~d~V~~g~~~~~--g~~~~~----------------------------~~~d~~~v~~aL~~Vg 128 (254)
T COG1121 80 VPQKSSVDRSFP-ITVKDVVLLGRYGKK--GWFRRL----------------------------NKKDKEKVDEALERVG 128 (254)
T ss_pred cCcccccCCCCC-cCHHHHHHccCcccc--cccccc----------------------------cHHHHHHHHHHHHHcC
Confidence 9994 56666 699999987632211 011100 0111345999999999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+.+.+|..+|+ |||||+|||-|||||+++|++|+|||||+|+|+.++..++++|+++.++ +.||+++|||...
T Consensus 129 m~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~ 201 (254)
T COG1121 129 MEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGL 201 (254)
T ss_pred chhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHH
Confidence 99999988875 9999999999999999999999999999999999999999999999865 6778889999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+.++||+|+.|+ +++.+.|+++++.
T Consensus 202 v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 202 VMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred hHhhCCEEEEEc-CeeEeccChhhcc
Confidence 999999999995 6889999998774
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=380.93 Aligned_cols=209 Identities=26% Similarity=0.383 Sum_probs=187.9
Q ss_pred cccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCC
Q 001507 707 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHS 785 (1065)
Q Consensus 707 ~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~ 785 (1065)
++.+++..+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|+++.. ...+|.+|+|+|+..+|
T Consensus 12 ~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcccC
Confidence 334567899999999999999999999999999999999999987 679999999999865 34578899999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
|+|||.||+.|+.+++. ....++.+++++++++.++|.+.+++.. .+|||||||||+|||||+.+|++|+|||
T Consensus 90 PHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 90 PHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred CCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 99999999999977432 3345667789999999999999888764 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|.|+||..-+..+...|+++.++ |.|.|++|||.+ +.+.++|||++|+ +|+++..|++.
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gtP~ 222 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGTPE 222 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCCHH
Confidence 99999999999999999999755 999999999986 7889999999998 58999999874
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=379.00 Aligned_cols=220 Identities=32% Similarity=0.470 Sum_probs=189.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~y 84 (1065)
.+++..+++ .+.+|+||||++++|++++++||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||
T Consensus 8 ~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 8 RNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred cceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEE
Confidence 344444432 357999999999999999999999999999999999999886 99999999887552 34578999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+|||.|.+.+++.... ..+++++++++.+||.+
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~ 128 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLED 128 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCch
Confidence 99999999999999999998887653210 11234899999999998
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++. +++||+|||||++||+||+.+|+++||||||+|||+.++.++++.|++++++ +++||+++||..+++..
T Consensus 129 ~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~ 202 (293)
T COG1131 129 KANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEE 202 (293)
T ss_pred hhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHH
Confidence 54444 4579999999999999999999999999999999999999999999999875 44788889999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHHHHHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLDFFA 271 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~~f~ 271 (1065)
+||+|++|++|++++.|+.+++...+.
T Consensus 203 ~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 203 LCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred hCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 999999999999999999988776543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=329.67 Aligned_cols=199 Identities=27% Similarity=0.363 Sum_probs=175.1
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+||||+|++||++-|+|||||||||||++|.+... ++.|+|.++|+++.. ..++|.+|+|+||..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 669999999999999999999999999999999999876 578999999998643 236789999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
..||+||+.|...... .+..+.+++|.++++..||.+.++... ..|||||||||+||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcCc-----cccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999876653 345667788999999999998887653 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEeCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGP 924 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gg~~~~~g~ 924 (1065)
|.+|||..+..|++++.++.+.|.||++.|||.+ +... -.|++.|. .|+++....
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~--lv~~~~~rvl~l~-~Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE--LVNRMRHRVLALE-DGRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH--HHHhccCcEEEEe-CCEEEeccc
Confidence 9999999999999999999989999999999954 4444 46788887 578887654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=336.86 Aligned_cols=206 Identities=26% Similarity=0.353 Sum_probs=178.9
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCC---CCCeeEEEEEECCccCCc-----ccccceEEEEcCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQND 782 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~ 782 (1065)
+++.+|+|||+.|++++++|++|||||||||||++|.+.. ++...+|+|.++|+++-. ..+|+.+|+|+|.|
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 5788999999999999999999999999999999999863 334578999999988643 35788999999999
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.-|| +|++||+.|+.++....+ ++.++.|++.++...|++- .|++... ..+|||||+|||||||||+.+|+||
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQQQRLcIARalAv~PeVl 171 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQQQRLCIARALAVKPEVL 171 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhHHHHHHHHHHHhcCCcEE
Confidence 9999 899999999988765433 6677889999999988754 4444322 3579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+||||||+|||.+...|.++|.+|+ +.-|||++||.+. ...+..|+..++.. |+++++|+.
T Consensus 172 LmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T 232 (253)
T COG1117 172 LMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPT 232 (253)
T ss_pred EecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCH
Confidence 9999999999999999999999997 5799999999986 57788999999984 799999986
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=344.95 Aligned_cols=225 Identities=25% Similarity=0.350 Sum_probs=186.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
++++..++ ...++|+|||++|++||+++|+|||||||||||++|.|+..+. +|+|.+||.++.... .++
T Consensus 7 ~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 7 KNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHH
Confidence 44544443 4467999999999999999999999999999999999988765 999999998876543 346
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.+||++|++.+.+.+||.+|+..+...+. +.+. ...+..+++ .+..+-+.|+.+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~--s~~~---------slfglfsk~---------------dk~~Al~aLerv 135 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYT--STWR---------SLFGLFSKE---------------DKAQALDALERV 135 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccc--hHHH---------HHhCCCCHH---------------HHHHHHHHHHHc
Confidence 89999999999999999999998654221 1111 112222222 234477889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+.+.+..+ +|||||+|||+|||||+.+|+|++-|||+++||+.+++++++.|++.+.+. +.|+++..|..+
T Consensus 136 gi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~-g~Tvi~nLH~vd 209 (258)
T COG3638 136 GILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED-GITVIVNLHQVD 209 (258)
T ss_pred CcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc-CCEEEEEechHH
Confidence 99998877765 599999999999999999999999999999999999999999999998764 566666789999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
.+.++||||+-|++|+++|.||++++-+
T Consensus 210 lA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 210 LAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9999999999999999999999988644
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=346.22 Aligned_cols=207 Identities=25% Similarity=0.389 Sum_probs=171.5
Q ss_pred Hhhhhc-CCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-------CC
Q 001507 8 QLRIYR-GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PP 79 (1065)
Q Consensus 8 ~~~~~~-~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-------~~ 79 (1065)
+++..+ .+.....+|++||++|++||+++|+|||||||||||++|.|+..|+ +|.|.++|.++.... .+
T Consensus 6 ~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 6 NVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred eeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHH
Confidence 444433 2334478999999999999999999999999999999999999875 999999998876543 23
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.+|||+|+..++|++||+||+.+++.+.+.... .....++.+++.
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~ 128 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEV 128 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHh
Confidence 5799999999999999999999987765432110 112347889999
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||.+..+. .++..|||||||||||||||+.+|++++.||||.+||+.++..+++.+++++++ .++||+++||+.
T Consensus 129 lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~-~g~tii~VTHd~ 203 (226)
T COG1136 129 LGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE-RGKTIIMVTHDP 203 (226)
T ss_pred cCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh-cCCEEEEEcCCH
Confidence 999866541 234579999999999999999999999999999999999999999999999875 466777799985
Q ss_pred hHHHhhcccEEEecCCcE
Q 001507 240 PEAYELFDDVILLSEGQI 257 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i 257 (1065)
++...|||++.|.+|++
T Consensus 204 -~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 204 -ELAKYADRVIELKDGKI 220 (226)
T ss_pred -HHHHhCCEEEEEeCCee
Confidence 45669999999999994
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=367.74 Aligned_cols=203 Identities=29% Similarity=0.398 Sum_probs=178.5
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 45679999999999999999999999999999999999877 568999999988643 23567899999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||+||+.|.+.++. ....+..++++++++.+++.+..++.+ ++||||||||++||+||+.+|++|||||||+
T Consensus 96 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 96 TVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 99999998765542 223344456789999999988777765 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|++
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~-~G~i~~~g~~ 222 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIE-EGRKIAEGAP 222 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999877999999999987 6778899999998 5899999985
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=331.38 Aligned_cols=213 Identities=22% Similarity=0.322 Sum_probs=188.1
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCccc----ccceEEEEc
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET----FARISGYCE 779 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~~~v~ 779 (1065)
.+..+.+++++++++||+.+++||++|++|||||||||.+.++.|... +.+|.|.+||.+++... .+.-+||+|
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCccccc
Confidence 445566788999999999999999999999999999999999999987 56999999999886532 233589999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 780 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
|++..|-.+||+||++.....+.. +....+++++.+++++.+++.++++... ..||||||+|+.|||||+.+|+
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCC
Confidence 999999999999999876665532 2233456667889999999999998764 4799999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.++||||++|+||-+...|.++++.|+++|..|++|-|... +....|||.+++.+ |++...|.+.
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 99999999999999999999999999999999999999987 78999999999985 8999999874
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=322.14 Aligned_cols=211 Identities=25% Similarity=0.349 Sum_probs=183.9
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PP 79 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~ 79 (1065)
+++++..|.+. ..+|+||||.|++||++.|+||||||||||||+|.+...|+ .|+|.++|.++.... .+
T Consensus 4 f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 4 FENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred ehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhh
Confidence 45666666544 57999999999999999999999999999999999998876 999999999976542 36
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
|+||+|+|+..++++.||+||+.|+.+..+... .+.++++.++|+.
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~ 124 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDL 124 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHH
Confidence 899999999999999999999999887654321 1234568999999
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
.||.+.++.. +..|||||||||+||||++.+|++|+.||||-.||+..+.+|++.+.++.+ -||||++.+|+.
T Consensus 125 VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~ 197 (223)
T COG2884 125 VGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDL 197 (223)
T ss_pred hccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccH
Confidence 9999987654 357999999999999999999999999999999999999999999999876 378888899999
Q ss_pred hHHHhhcccEEEecCCcEEEEcC
Q 001507 240 PEAYELFDDVILLSEGQIVYQGP 262 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~ 262 (1065)
+.+...-.+++.|++|+++....
T Consensus 198 ~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 198 ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999987643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=340.23 Aligned_cols=219 Identities=26% Similarity=0.316 Sum_probs=185.0
Q ss_pred HHHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCc
Q 001507 6 LRQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPR 80 (1065)
Q Consensus 6 ~~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~ 80 (1065)
++++.+.++.. ....+|+||||++.+||.++|+|+||||||||.++|+|+..|+ +|+|.++|.+..... ..+
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhcc
Confidence 45666666543 2346999999999999999999999999999999999999876 999999998765542 457
Q ss_pred eEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 81 TSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 81 ~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
.+-+|+||| .+-|..||++.|.-+....+. .+.++++.++|+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~------------------------------------~~~~~~i~~~L~ 126 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL------------------------------------SKSQQRIAELLD 126 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc------------------------------------cHHHHHHHHHHH
Confidence 799999998 477889999999766543221 112334888999
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||+...- ++++..|||||||||+|||||..+|++|+||||||+||+..+.+|++.|.++.+. .+.+.++++|+
T Consensus 127 ~VgL~~~~l----~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHd 201 (252)
T COG1124 127 QVGLPPSFL----DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHD 201 (252)
T ss_pred HcCCCHHHH----hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCc
Confidence 999986432 3556789999999999999999999999999999999999999999999999875 46778889999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
...+..+||||+||++|++++.++.+++.+
T Consensus 202 l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999998864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=315.93 Aligned_cols=196 Identities=28% Similarity=0.366 Sum_probs=172.5
Q ss_pred eeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCHHHHHHH
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 796 (1065)
Q Consensus 718 ~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 796 (1065)
..+++|.+||++||+||||||||||||+++|... |.+|+|.|||.+.+. ....|-++.++|+..+|..+||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4567889999999999999999999999999987 569999999998754 3456778999999999999999999987
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHH
Q 001507 797 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876 (1065)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~ 876 (1065)
+.. |.-.-.++.+++++.++..+||.++.+++. .+|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 642 211122455677999999999999988875 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 877 IVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 877 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
++..++.++++ ++.|++++||+|+ +....+|+++++++ |+|.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999975 4899999999998 78899999999985 899999985
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=365.26 Aligned_cols=201 Identities=26% Similarity=0.324 Sum_probs=176.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 579999999999999999999999999999999999887 5689999999876431 23567999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+||+||+.|....+. ....+..+++.++++.+||.+..+... ..|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999998754331 234555677899999999988877654 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|+++..|+.
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv~~g~~ 225 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQGTV 225 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 9999999999999999999765 999999999986 5678899999998 5899999975
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=371.16 Aligned_cols=203 Identities=26% Similarity=0.361 Sum_probs=179.1
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 4579999999999999999999999999999999999877 578999999987643 2235789999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.|+...+. ....+..++++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+||||||+|
T Consensus 94 ~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 94 RENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred HHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999865431 234455577899999999988877754 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|. +|+++..|++.
T Consensus 166 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~~ 220 (356)
T PRK11650 166 DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTPV 220 (356)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCHH
Confidence 999999999999999765 999999999986 6888999999998 58999999863
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=369.67 Aligned_cols=204 Identities=26% Similarity=0.388 Sum_probs=180.2
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++.. ...++.+|||+|+..++|++|
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCc
Confidence 34679999999999999999999999999999999999877 578999999987643 234577999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|+||+.|+...+ ..+..+..++++++++.++|.++.++.. .+|||||||||+|||||+.+|++|+|||||++
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 93 VADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999986543 2234556678899999999998887654 58999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 870 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|+ +|+++..|++.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~-~G~i~~~g~~~ 220 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMN-HGVIEQVGTPQ 220 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999765 899999999986 6888999999998 58999999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=368.44 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=180.0
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-cccceEEEEcCCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~lt 789 (1065)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++... ..++.+|||+|+..++|++|
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 34679999999999999999999999999999999999987 5699999999876532 23577999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|+||+.|+...+. ....+..++++++++.+++.++.++.. ..|||||||||+|||||+.+|++|+|||||++
T Consensus 95 v~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 95 LGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred HHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 9999999865432 234556678899999999988877654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 870 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|+ +|+++..|++.
T Consensus 167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~-~G~i~~~g~~~ 222 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMN-KGKIMQIGSPQ 222 (351)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999765 899999999986 6888999999998 58999999863
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=333.43 Aligned_cols=199 Identities=27% Similarity=0.366 Sum_probs=169.1
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCC--CCCC
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDI--HSPG 787 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~--~~~~ 787 (1065)
.+|+||||+|.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.... .+.+.+.+|+||+. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 59999999999999999999999999999999999987 5699999999876443 46778999999974 6789
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.||++.|.-.... ....+. .+++.++++.+||.+- .++. +.+||||||||+||||||+.+|++|+||||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 9999988755432 122222 2338899999999653 3332 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+||+..+.+|+++|.++.++ +.|+|++|||.+ -+..+|||++||.+ |+++..++..
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechh
Confidence 9999999999999999999754 889999999987 47788999999985 8999999863
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.49 Aligned_cols=217 Identities=27% Similarity=0.349 Sum_probs=183.6
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~y 84 (1065)
++++++.+. .++.+|+|+||++++||+++|+|||||||||||++|+|+..|+ +|+|.++|.++.... .++.++|
T Consensus 6 i~~l~~~~~--~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 6 LQAVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEeEEEEeC--CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEE
Confidence 455555552 1246999999999999999999999999999999999998876 999999999876543 2468999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|+|++.+||++||+||+.|+.+.++.. ..+...+++++++.+||.+
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~ 126 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEP 126 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChh
Confidence 999999999999999999976432110 0011234788999999988
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..+..+ ++|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++. +++++++||+..++..
T Consensus 127 ~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~ 200 (356)
T PRK11650 127 LLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMT 200 (356)
T ss_pred HhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 776554 5699999999999999999999999999999999999999999999987643 5677779999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+|++|++|+++..|+++++.
T Consensus 201 l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 201 LADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999998874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=351.47 Aligned_cols=204 Identities=26% Similarity=0.375 Sum_probs=174.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIH 784 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~ 784 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 88 (235)
T cd03261 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88 (235)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCccc
Confidence 34579999999999999999999999999999999999876 568999999987542 2345679999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
++.+||+||+.+...... .....+..++++++++.+++.+..++.+ ..|||||||||+|||||+.+|+||+||
T Consensus 89 ~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 89 FDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred CCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999988643221 1233344566788999999987666544 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 221 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLY-DGKIVAEGTP 221 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEE-CCeEEEecCH
Confidence 999999999999999999999764 899999999986 5777899999998 5899988874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=344.42 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=179.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC----cccccceEEEEcCCCC-CCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGYCEQNDI-HSPG 787 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~~~v~q~~~-~~~~ 787 (1065)
..+|+|+|++|++||.++|+|+||||||||+++|+|..+ +.+|.|.++|.+.. ...+++.+|||+|++. .+..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 589999999999999999999999999999999999987 56899999998865 3567889999999974 3457
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
-||.|.+.|+.... ..+.++.+++++++++.+++.+.+++.. ..|||||||||+||.+|+.+|++|+|||||
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 79999999987543 3445567889999999999999977654 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+.++..+++.++++.++ |+|||++|||.+ .+...+|++++|+ +|+++++|++
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~-~G~i~~~g~p 223 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLD-DGKILADGDP 223 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEE-CCEEeecCCH
Confidence 999999999999999999877 799999999987 5778899999998 5899999975
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=314.41 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=173.8
Q ss_pred CceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEEccccccCCCCCHHHHHH
Q 001507 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 102 (1065)
Q Consensus 24 ~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~ 102 (1065)
..++.|+.||+++|+||||||||||||+|+|+..|. +|+|.+||.+.+... ..|-+++++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999876 999999999977654 4578999999999999999999998
Q ss_pred HHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCchhh
Q 001507 103 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182 (1065)
Q Consensus 103 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 182 (1065)
++..- +-+.+ ...+++++.++..+||..+.+.+.+ +|||||
T Consensus 94 LGl~P---~LkL~-------------------------------a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLSP---GLKLN-------------------------------AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCCc---ccccC-------------------------------HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 86421 11100 1123458999999999998876654 599999
Q ss_pred hhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEcC
Q 001507 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 262 (1065)
Q Consensus 183 kqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~ 262 (1065)
||||+|||+|+.+-+|++||||+|+||+.-+.+...++.+++.+. +.|+++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~-~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER-KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998764 5666678888899999999999999999999999
Q ss_pred cchHH
Q 001507 263 RVSVL 267 (1065)
Q Consensus 263 ~~~~~ 267 (1065)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 87764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=364.88 Aligned_cols=204 Identities=26% Similarity=0.363 Sum_probs=178.2
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ 787 (1065)
++++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.
T Consensus 51 y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 128 (340)
T PRK13536 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLE 128 (340)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccEEEEeCCccCCCC
Confidence 345679999999999999999999999999999999999877 568999999988643 2346779999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
+||.||+.|.+.++. ....+..++++++++.++|.+..++.+ ++||||||||++||+||+.+|++|||||||
T Consensus 129 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 129 FTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 999999987655432 122334456788999999988777765 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|+ +|++++.|++
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~-~G~i~~~g~~ 256 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-AGRKIAEGRP 256 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999877999999999987 6788999999998 4899999986
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=357.26 Aligned_cols=186 Identities=22% Similarity=0.223 Sum_probs=140.0
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHH
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 793 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 793 (1065)
+++.+++..+..-+..+++|+||+||||+++++.|... +..|-+.+.+ +.+++|-.|...-+..+.|.+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--------cceecchhHhhhhHHHHHhHHH
Confidence 67889999999999999999999999999999999665 4567776654 4568999998655444444432
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHH
Q 001507 794 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873 (1065)
Q Consensus 794 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~ 873 (1065)
.+....+ | ... ++.+++.+..+||..-.- ...+.+||||||-||++|.....+|.+|+|||||+.||..
T Consensus 448 -d~~~~~~-p-G~~----~ee~r~hl~~~Gl~g~la----~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 448 -DFMEKSF-P-GKT----EEEIRRHLGSFGLSGELA----LQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred -HHHHHhC-C-CCC----HHHHHHHHHhcCCCchhh----hccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2222222 1 112 233567778888864221 1124689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 001507 874 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 924 (1065)
+-..+-+.|+.+ +..||++||+.+ -+-..|+.+.+..+|...-+.|.
T Consensus 517 sl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 517 SLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeecc
Confidence 999999999875 567999999976 36677999999986443334443
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=367.68 Aligned_cols=204 Identities=27% Similarity=0.343 Sum_probs=179.3
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeE--EEEEECCccCCc-ccccceEEEEcCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ-ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~--G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ 787 (1065)
+++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.++.. ...++.+|||+|++.++|.
T Consensus 16 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 34579999999999999999999999999999999999877 467 999999987643 2245679999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
+||+||+.|+...+ .....+..++++++++.++|.+..++.+ .+|||||||||+|||||+.+|++|+|||||
T Consensus 94 ~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~ 165 (362)
T TIGR03258 94 LKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPL 165 (362)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 99999999986543 2334555667899999999998887764 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC--CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+|||+..+..+.+.|+++.++ |.|+|++|||++ ++...+|++++|+ +|+++..|++.
T Consensus 166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~-~G~i~~~g~~~ 224 (362)
T TIGR03258 166 SALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMK-DGRLAAHGEPQ 224 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 999999999999999999866 799999999986 6788999999998 58999999863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=371.86 Aligned_cols=216 Identities=24% Similarity=0.368 Sum_probs=184.1
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-CceEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~-~~~~~y 84 (1065)
++++++.++ +..+|+|+|+++++||+++|+|||||||||||++|+|++.|+ +|+|.++|.++..... ++.++|
T Consensus 9 ~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 9 LKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEE
Confidence 455655554 246899999999999999999999999999999999999876 9999999998765433 478999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|+|++.+||++||+||+.|+.+.++... .+.+++++++++.+||.+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~ 128 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAG 128 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCch
Confidence 9999999999999999999865332100 011234788999999988
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..+.. ++.|||||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.++. ++++++++|+.+++..
T Consensus 129 ~~~r~-----~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~ 202 (351)
T PRK11432 129 FEDRY-----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFA 202 (351)
T ss_pred hhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHH
Confidence 76654 45699999999999999999999999999999999999999999999987643 5667779999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+|++|++|+++..|+++++.
T Consensus 203 laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 203 VSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999998874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=368.18 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=183.9
Q ss_pred HHHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------C
Q 001507 6 LRQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------P 78 (1065)
Q Consensus 6 ~~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~ 78 (1065)
++++++.++.. ....+|+||||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .
T Consensus 4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHH
Confidence 34566555422 2357999999999999999999999999999999999999876 999999999876532 2
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|+..+++..||+||+.|+....+... .+...++.++++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~ 126 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLA 126 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHH
Confidence 4679999999999999999999998754321100 011234788999
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||.+..|..+ ..|||||||||+|||||+.+|++|+|||||||||+.++..+++.|+++.++. +.||++++|+
T Consensus 127 ~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~ 200 (343)
T TIGR02314 127 LVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHE 200 (343)
T ss_pred HcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 999998776554 5699999999999999999999999999999999999999999999987643 5667779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+.+.++||+|++|++|++++.|+++++.
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999988764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=347.56 Aligned_cols=216 Identities=27% Similarity=0.374 Sum_probs=185.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCC----CCCCCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----EFVPPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~----~~~~~~~~ 82 (1065)
+++.+.+++. ..+|+|+|+++++|+.++|+|+||||||||+++|+|++.|. +|.|.++|.+.. ....++.+
T Consensus 7 ~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 7 ENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred EEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcce
Confidence 4455555444 67999999999999999999999999999999999999886 899999998865 22456889
Q ss_pred EEEcccc-ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQD-WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~-~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
|||+|+| .++...||.|.+.|+..+.+... .+.+.+++++++.+|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vg 127 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVG 127 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 9999996 45677899999999877654321 112456899999999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+.++.. +..|||||||||+||.+|+.+|++++|||||||||+..+.++++.++++... ++.|||+++|+.+.
T Consensus 128 l~~~~~r~-----p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~ 201 (235)
T COG1122 128 LEELLDRP-----PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLEL 201 (235)
T ss_pred chhhccCC-----ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHH
Confidence 99887654 5679999999999999999999999999999999999999999999999764 46778889999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+..++|++++|++|+++++|++.++.
T Consensus 202 ~~~~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 202 VLEYADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred HHhhCCEEEEEECCEEeecCCHHHHh
Confidence 99999999999999999999987664
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=361.87 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=177.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 45679999999999999999999999999999999999877 568999999987643 23456799999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||+||+.+.+.++. .......++++++++.+++.+..++.+ +.|||||||||+||+||+.+|++|||||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998765542 223344556889999999988777654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+++.|++++++|+|||++||+++ ++...||++++|. +|++++.|++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 208 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIID-HGRIIAEGTP 208 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999877999999999986 6778899999998 5899999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=371.30 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=183.6
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~y 84 (1065)
+++++..++ .+.+|+|+||++++||+++|+|||||||||||++|+|+..|+ +|+|.++|+++.... .+|.++|
T Consensus 7 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 7 IDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEE
Confidence 345555553 246899999999999999999999999999999999999876 999999999876543 3467999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|+|++.+||++||+||+.|+...++.. ..+.+.+++++++.+||++
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~ 126 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPG 126 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999976432110 0011234889999999998
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..|.. +.+|||||||||+|||||+.+|+++||||||++||..++.++.+.|+++.++. ++++++++|+.+++..
T Consensus 127 ~~~~~-----~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~ 200 (353)
T TIGR03265 127 SERKY-----PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALS 200 (353)
T ss_pred hhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHH
Confidence 77654 45699999999999999999999999999999999999999999999987643 5667779999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+|++|++|++++.|+++++.
T Consensus 201 l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 201 MADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=370.26 Aligned_cols=216 Identities=25% Similarity=0.343 Sum_probs=183.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCcee--EEEEECCccCCCCC-CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS--GKITYNGHGFKEFV-PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~--G~i~~~g~~~~~~~-~~~~~~ 83 (1065)
++++..+++ ..+|+|+|+++++||+++|+|||||||||||++|+|++.|+ + |+|.++|.++.... .++.++
T Consensus 9 ~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 9 DHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEE
Confidence 445555432 46999999999999999999999999999999999999876 7 99999999875433 246799
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
||+|++.+++++||+||+.|+...++... .+.+.+++++++.+||+
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~ 128 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLG 128 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCC
Confidence 99999999999999999999865332100 01123478899999999
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+..|+.+ ++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++.+++|++++||+.+++.
T Consensus 129 ~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 129 DAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203 (362)
T ss_pred chhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 8777654 56999999999999999999999999999999999999999999999876533567778999999999
Q ss_pred hhcccEEEecCCcEEEEcCcchHH
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.++|+|++|++|+++..|+++++.
T Consensus 204 ~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 204 TLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=363.34 Aligned_cols=205 Identities=23% Similarity=0.316 Sum_probs=179.4
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---cc----cceEEEEcCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TF----ARISGYCEQND 782 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~~~v~q~~ 782 (1065)
++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|++
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 345679999999999999999999999999999999999987 5799999999886532 22 56899999999
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
.+++.+||+||+.|...+. ....++..+++.++++.++|.+..++.. ..|||||||||+|||||+.+|+|||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999976543 2334556677899999999987777654 5799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||||++||+.++..+++.++++.++ |+|||++||+++ ++...+|++++|. +|+++..|++.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 99999999999999999999999754 899999999986 5788899999998 58999999753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=365.25 Aligned_cols=207 Identities=27% Similarity=0.391 Sum_probs=178.9
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++.. ...++.+|||+|++.++|.+|
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence 34679999999999999999999999999999999999877 568999999987643 223467999999999999999
Q ss_pred HHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 790 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 790 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|+||+.|....+.. .....++..++++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s 165 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFG 165 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999997643211 12234455667899999999988777654 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|+ +|++++.|++.
T Consensus 166 ~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~-~G~i~~~g~~~ 222 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMS-QGNIEQAGTPD 222 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 99999999999999999765 899999999986 6888999999998 58999999763
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=381.94 Aligned_cols=221 Identities=25% Similarity=0.410 Sum_probs=185.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC---CceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~---~~~~ 82 (1065)
+++++|.|+.+++.++|+|+||+|+|||++|||||||+||||+.++|..++.|. +|+|.+||+|+.+.++ ++.|
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHe
Confidence 578899999999999999999999999999999999999999999999999876 9999999999987754 6889
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|+|.|+|.+|.. ||+|||.|+... ...+.+.++++.. ...+. ..++
T Consensus 545 g~V~QEPvLFs~-sI~eNI~YG~~~----~t~e~i~~AAk~A--------------------------Nah~F---I~~~ 590 (716)
T KOG0058|consen 545 GLVGQEPVLFSG-SIRENIAYGLDN----ATDEEIEAAAKMA--------------------------NAHEF---ITNF 590 (716)
T ss_pred eeeeccceeecc-cHHHHHhcCCCC----CCHHHHHHHHHHh--------------------------ChHHH---HHhC
Confidence 999999998875 999999997541 1111111111100 00111 3468
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++.+||.||+++. .||||||||+||||||++||.||||||.||+||+++...+.+.|.+..+ +.||++|.|..+.+
T Consensus 591 p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 591 PDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRLSTV 666 (716)
T ss_pred ccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhhhHh
Confidence 9999999999876 6999999999999999999999999999999999999999999987653 36666688887655
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+.+|+|+++++|++++.|+++|+++
T Consensus 667 -~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 667 -RHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred -hhccEEEEEcCCeEEecccHHHHhh
Confidence 5689999999999999999999875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=331.50 Aligned_cols=214 Identities=28% Similarity=0.381 Sum_probs=185.4
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCccc----ccceEEEEc
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET----FARISGYCE 779 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~~~v~ 779 (1065)
++.++.++...+++||||++++||++||+||||||||||+|+|+|..+ +.+|+|.++|++++... .+.-++..+
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeec
Confidence 344455677889999999999999999999999999999999999987 57899999999875422 344578899
Q ss_pred CCCCCCCCCCHHHHHHHHhhcc--------CCC-CCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHH
Q 001507 780 QNDIHSPGLTVLESLLFSAWLR--------LPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 850 (1065)
Q Consensus 780 q~~~~~~~ltv~e~l~~~~~~~--------~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~i 850 (1065)
|...+|++|||.||+..++..+ .+. ....++..++..++++.+||.+.++...+ +||+||||||.|
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEI 160 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEI 160 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHH
Confidence 9999999999999999875533 111 11234556778899999999999998764 799999999999
Q ss_pred HHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 851 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 851 a~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||||+.+|++|+||||.+||.+.....+.+.|+++.++ |.||++|-||++ -++.+||||+||+. |+++.+|++.
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 99999999999999999999999999999999999874 799999999998 48899999999984 8999999874
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=363.54 Aligned_cols=216 Identities=28% Similarity=0.375 Sum_probs=183.1
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSA 83 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~ 83 (1065)
++++++.++ +..+|+||||+|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++... ..++.+|
T Consensus 10 i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 10 FRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred EEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEE
Confidence 345555553 356999999999999999999999999999999999999876 99999999987543 2346799
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
||+|++.+++.+||+||+.|.+..++... .+...+++++++.+||.
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~ 129 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLE 129 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCc
Confidence 99999999999999999987654432100 00122367889999999
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+.+++.++ +||||||||++||+||+.+|++++|||||+|||+.++..+++.|+++++ .+++|++++|+.+++.
T Consensus 130 ~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~ 202 (306)
T PRK13537 130 NKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAE 202 (306)
T ss_pred hHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHH
Confidence 88877664 6999999999999999999999999999999999999999999999864 3677888999999999
Q ss_pred hhcccEEEecCCcEEEEcCcchHHH
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
++||+|++|++|++++.|+++++..
T Consensus 203 ~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 203 RLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999988754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=365.98 Aligned_cols=208 Identities=21% Similarity=0.284 Sum_probs=179.1
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-------CceEEEEccccc
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 90 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~-------~~~~~yv~Q~~~ 90 (1065)
.+.+|+|+||+|++||+++|+|||||||||||++|+|++.|. +|+|.++|.++..... ++.++||+|+++
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 346899999999999999999999999999999999999875 9999999998765432 467999999999
Q ss_pred cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccc
Q 001507 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 170 (1065)
Q Consensus 91 ~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 170 (1065)
+++++||+||+.|+....+... .+..+++.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999998755332100 011234788999999987766554
Q ss_pred cCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEE
Q 001507 171 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250 (1065)
Q Consensus 171 g~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~ 250 (1065)
..|||||||||+|||||+.+|+|+||||||+|||+.++.++.+.++++.+. .++||++++|+.+++..+||+|+
T Consensus 128 -----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 -----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 469999999999999999999999999999999999999999999988654 35677779999999999999999
Q ss_pred EecCCcEEEEcCcchHHH
Q 001507 251 LLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 251 ~l~~G~i~~~G~~~~~~~ 268 (1065)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999888753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=342.52 Aligned_cols=200 Identities=31% Similarity=0.433 Sum_probs=170.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 4579999999999999999999999999999999999876 568999999987643 2234679999999988889999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+...... .......+.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 90 AENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred HHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987643321 123334456788999999987766543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 871 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|+.++..+++.|+++++ .|+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999976 4899999999986 56788999999985 7887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=365.39 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=184.4
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~ 767 (1065)
++++|++..+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 15 L~l~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~ 79 (375)
T PRK09452 15 VELRGISKSF-------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDIT 79 (375)
T ss_pred EEEEEEEEEE-------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5666666544 34579999999999999999999999999999999999887 56899999998764
Q ss_pred c-ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHH
Q 001507 768 Q-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 846 (1065)
Q Consensus 768 ~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 846 (1065)
. ...++.+|||+|++.++|.+||+||+.|+...+. ....+..++++++++.+++.+..++.+ ..|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 3 2235679999999999999999999999764331 234445567899999999998887754 589999999
Q ss_pred HHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 847 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 847 r~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++|||+. ++...+|++++|. +|+++..|++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~-~G~i~~~g~~ 229 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMR-DGRIEQDGTP 229 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999999999999999999999765 999999999986 6888999999998 5899999976
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=331.51 Aligned_cols=228 Identities=23% Similarity=0.354 Sum_probs=190.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCC----ceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~----~~~ 82 (1065)
++++..++ ...+++||||++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-+
T Consensus 8 ~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 8 RGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccc
Confidence 44444443 467999999999999999999999999999999999999886 99999999998876543 457
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+..+|...+|+++||.||+..+...+.. +.... ..... .....+..+++.++|+.+||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~---~~~~l---------~~~~~----------~~~e~~~~e~A~~~Le~vgL 139 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLG---LSGLL---------GRPRA----------RKEEREARERARELLEFVGL 139 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhh---hhhhh---------ccccc----------hhhHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999988654321 00000 00000 00112234568899999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+.+|+..|+ ||+|||||+.|||||+.+|++|+||||.+||.+....++.+.++++.+. ++.+|+++-|+++.+
T Consensus 140 ~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~V 213 (250)
T COG0411 140 GELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLV 213 (250)
T ss_pred chhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHH
Confidence 9999998875 9999999999999999999999999999999999999999999999763 568888899999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+.+||||+||+.|+++.+|+++++.+
T Consensus 214 m~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 214 MGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred hhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999998863
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=322.62 Aligned_cols=217 Identities=19% Similarity=0.328 Sum_probs=185.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCC----ceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~----~~~ 82 (1065)
+++...++ ++++++|||+.+++||+++++|||||||||.+.++.|+..|+ +|+|.+||.+++..... .-+
T Consensus 8 ~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 8 ENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred hhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCc
Confidence 44555543 356999999999999999999999999999999999999887 99999999999877543 358
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
||+||++..|-.+||+|||.-..+.+....+ ..+.+.+.+.+|+.|+|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~--------------------------------~~~~~~~l~~LL~ef~i 129 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLK--------------------------------KAERKEELDALLEEFHI 129 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchh--------------------------------HHHHHHHHHHHHHHhch
Confidence 9999999999999999999876654321100 00112347899999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.|.++..- .+||||||||+.|||||+.+|+.++||||++|+||.+..+|.+.++.+.. .+.-|+++-|+..|.
T Consensus 130 ~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREt 202 (243)
T COG1137 130 THLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRET 202 (243)
T ss_pred HHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHH
Confidence 99988754 36999999999999999999999999999999999999999999999875 366677788999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
..+|||.+++++|++..+|+++++.+
T Consensus 203 L~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 203 LDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999999999999999988863
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=341.23 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=172.2
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999876 468999999987642 3567999999998888899999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCH
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~ 872 (1065)
|+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654331 222334566889999999987666543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEeCCC
Q 001507 873 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 925 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~ 925 (1065)
.++..+.+.|+++.+ .|+|||++||+++ ++...+|++++|.+ +|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 56788999999985 4899888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=340.93 Aligned_cols=194 Identities=25% Similarity=0.320 Sum_probs=166.6
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 469999999999999999999999999999999999876 5689999999875321 24567999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+||+||+.+....+. .......++++++++.+++.+..+... ..||||||||++|||||+.+|++||||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998754331 122334566889999999987766544 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|.+ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999986 56678999999985 55
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=326.50 Aligned_cols=216 Identities=25% Similarity=0.387 Sum_probs=179.2
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC----Cce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~----~~~ 81 (1065)
+++++.+|++ .++|++|||++++||+++|+|+||+||||||++|+|..++. +|+|.++|++++...+ ++-
T Consensus 6 v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 6 VENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred EEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCC
Confidence 4566777654 57999999999999999999999999999999999999775 9999999999987654 356
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++||||....|+.+||+|||..++........ . +..++++.+.|=
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~-~----------------------------------~~~~e~v~~lFP 124 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA-Q----------------------------------ERDLEEVYELFP 124 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc-c----------------------------------cccHHHHHHHCh
Confidence 89999999999999999999987543211000 0 000334444432
Q ss_pred -CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 162 -LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 162 -L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
|.+..++.-| +|||||||-++|||||+++|++|+|||||.||-|.-..+|++.++++.+. ++.||+.+.|+..
T Consensus 125 ~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~ 198 (237)
T COG0410 125 RLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNAR 198 (237)
T ss_pred hHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHH
Confidence 4444455444 59999999999999999999999999999999999999999999999865 4578888999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
.+.+++||.++|.+|+++++|+.+++..
T Consensus 199 ~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 199 FALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999988753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=368.68 Aligned_cols=215 Identities=26% Similarity=0.345 Sum_probs=182.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv 85 (1065)
+++++.++ .+.+|+|+|+++++||+++|+|||||||||||++|+|++.|+ +|+|.++|.++.... .++.++||
T Consensus 18 ~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 18 RGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred EEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEE
Confidence 44555443 246899999999999999999999999999999999999876 999999999876543 24679999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+||++||+||+.|+.+.++... .+.+.+++++++.+||.+.
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~ 137 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEF 137 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999754321100 0112347889999999887
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.+..+ .+|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++. +++++++||+..++..+
T Consensus 138 ~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~l 211 (375)
T PRK09452 138 AQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTM 211 (375)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHh
Confidence 76654 5699999999999999999999999999999999999999999999987653 56677799999999999
Q ss_pred cccEEEecCCcEEEEcCcchHH
Q 001507 246 FDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+|+|++|++|+++..|+++++.
T Consensus 212 aDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 212 SDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999998874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=341.34 Aligned_cols=203 Identities=28% Similarity=0.367 Sum_probs=173.7
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 11 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (220)
T cd03265 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDEL 88 (220)
T ss_pred CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccC
Confidence 34679999999999999999999999999999999999876 568999999986532 23456799999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||+||+.+....+. ....+..++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 89 TGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988754432 222334456789999999987666544 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++..|++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIID-HGRIIAEGTP 216 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEeCCh
Confidence 99999999999999999876 899999999986 5777899999998 5799888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=357.18 Aligned_cols=203 Identities=27% Similarity=0.370 Sum_probs=174.8
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 34679999999999999999999999999999999999876 568999999987632 23456799999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||+||+.+.+..+. .......++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+
T Consensus 93 tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 93 TVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999987554321 222333456778999999987776654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|. +|++++.|+.
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 219 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLE-SGRKIAEGRP 219 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999877999999999986 6778899999998 5899999875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=338.85 Aligned_cols=199 Identities=24% Similarity=0.443 Sum_probs=170.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..++.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 4579999999999999999999999999999999999876 568999999987643 3456799999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
||+.+....+. .......+.++++++.+++.+..+... ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99988654432 122334456788999999987666543 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999998777899999999986 56678999999984 7887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=363.59 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=178.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++||
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 4579999999999999999999999999999999999987 568999999987643 2346789999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.||+.|+...+. ....+..++++++++.+++.+..++.. .+|||||||||+|||||+.+|++|+|||||++|
T Consensus 109 ~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~L 180 (377)
T PRK11607 109 EQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180 (377)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999765332 234555677899999999988877654 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 871 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|...+..+.+.|+++.+ .|.|+|++|||++ ++..++|++++|. +|+++..|++.
T Consensus 181 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~~~ 235 (377)
T PRK11607 181 DKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGEPE 235 (377)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcCHH
Confidence 99999999999999865 4899999999986 6888999999998 58999999863
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=323.73 Aligned_cols=209 Identities=27% Similarity=0.365 Sum_probs=174.0
Q ss_pred cccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcC
Q 001507 705 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQ 780 (1065)
Q Consensus 705 ~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q 780 (1065)
+....++..++|++|||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|++++. ...++-++||||
T Consensus 8 ~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 8 NLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred eEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 33445677899999999999999999999999999999999999887 458999999998754 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 781 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
....|+.|||+|||..++..+... ......++++.+.+- |.+..+.+. ..|||||||.++|||||+.+|+
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred cccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHHHHHHHHHHhcCCC
Confidence 999999999999999876544221 111122566666653 444444443 3799999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+|+|||||.||-|.-..+|.+.|++++++ |.||+++-++.. ...+.+||.++|. .|++++.|+..
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle-~Griv~~G~~~ 222 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLE-NGRIVLSGTAA 222 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEe-CCEEEEecCHH
Confidence 99999999999999999999999999866 789999999876 4678899999998 58999999864
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=363.64 Aligned_cols=204 Identities=27% Similarity=0.388 Sum_probs=177.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+|
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 14 GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS 91 (369)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCC
Confidence 34679999999999999999999999999999999999877 568999999987643 223467999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|+||+.|....+. ....+..++++++++.+++.+..++.+ ..|||||||||+|||||+.+|++|||||||+|
T Consensus 92 v~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~ 163 (369)
T PRK11000 92 VAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (369)
T ss_pred HHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999998765432 233445567899999999988777654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 870 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+.++..+.+.|+++.++ |.|||++|||++ ++...+|++++|. +|+++..|++.
T Consensus 164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~-~G~i~~~g~~~ 219 (369)
T PRK11000 164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKPL 219 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCHH
Confidence 9999999999999999765 899999999986 6778899999998 58999998753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=322.42 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=189.5
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCC
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 783 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~ 783 (1065)
.+.++.++++.+++|+||.++||+++|++|||||||||++++|.|... +++|+|.++|.+++.. .+.+|||.|.+-.
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERG 82 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERG 82 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhc
Confidence 344556788999999999999999999999999999999999999987 5799999999987643 3557999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++.+||.|.|.|.|.++. .+.++.+..+..+|+.+++.....+.+ +.||.|++|++.+-.+++++|++++|
T Consensus 83 Ly~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred cCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 9999999999999998874 456677778899999999998887765 58999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+|||||.+.+.+-+.+.+++++|.|||+++|+++ .+.++||++++|++ |+.|..|+.
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 9999999999999999999999999999999999987 68899999999984 789999986
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=363.61 Aligned_cols=207 Identities=28% Similarity=0.375 Sum_probs=177.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 787 (1065)
+++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|+++.. ..+++.+|||+|++.+++.
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 45789999999999999999999999999999999999877 568999999987643 3456789999999999899
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+||+|++.++...... .........++++++++.+++.+..++.+ ..||||||||++|||||+++|++||||||
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEP 166 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEP 166 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 9999999875321100 00012334567899999999988877654 58999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|+|||+.++..++++|++++++|+|||+++|+++ ++.+.||++++|+ +|++++.|++.
T Consensus 167 tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~-~G~iv~~G~~~ 224 (402)
T PRK09536 167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLA-DGRVRAAGPPA 224 (402)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 9999999999999999999877999999999987 5778999999998 58999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=343.20 Aligned_cols=205 Identities=29% Similarity=0.387 Sum_probs=173.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c-ccceEEEEcCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 787 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~~~v~q~~~~~~~ 787 (1065)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 4579999999999999999999999999999999999876 5689999999876431 1 23569999999999999
Q ss_pred CCHHHHHHHHhhccCCCC-------CCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 788 LTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
+||+||+.+....+.... .......+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 164 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKL 164 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988654321110 012334456789999999987666543 57999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 227 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLD-QGRVIAEGTP 227 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEeecCH
Confidence 9999999999999999999999999877999999999987 5778899999998 5899988864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=337.53 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=170.5
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-cccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 4579999999999999999999999999999999999876 5689999999876431 224579999999988889999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+....+. ....+..++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~L 161 (213)
T cd03301 90 YDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161 (213)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654321 223344556788999999987766544 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999764 899999999986 56778999999984 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=358.76 Aligned_cols=202 Identities=26% Similarity=0.334 Sum_probs=175.1
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~ 785 (1065)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.+||++|++.++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 3579999999999999999999999999999999999877 5689999999876431 2356799999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+||+||+.+....+. ....+..++++++++.+++.+..++.. ..|||||||||+|||||+.+|++|||||
T Consensus 95 ~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999998754432 233444567889999999987766543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|+ +|++++.|+.
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~-~G~i~~~g~~ 225 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVID-AGRLVEQGTV 225 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999999765 899999999986 5777899999998 5899998875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=363.78 Aligned_cols=219 Identities=26% Similarity=0.364 Sum_probs=182.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-CceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~-~~~~~yv 85 (1065)
+++++.+++ +.+|+|+||++++||+++|+|||||||||||++|+|++.|+ +|+|.++|+++..... ++.++||
T Consensus 6 ~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 6 ANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEE
Confidence 345554432 46999999999999999999999999999999999998876 9999999998754332 3679999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+++++||+||+.|+..........+ ..+..++++++++.+||++.
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~L~~~ 129 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPN------------------------------AAAIKAKVTQLLEMVQLAHL 129 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCC------------------------------HHHHHHHHHHHHHHcCCchh
Confidence 999999999999999998754311000000 00112347889999999877
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ ..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.++ .+.++++++|+.+++..+
T Consensus 130 ~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~ 203 (353)
T PRK10851 130 ADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEV 203 (353)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 76554 569999999999999999999999999999999999999999999998764 356777799999999999
Q ss_pred cccEEEecCCcEEEEcCcchHH
Q 001507 246 FDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+|+|++|++|++++.|+++++.
T Consensus 204 ~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 204 ADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred CCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999998874
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=341.98 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=173.3
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c-ccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 34679999999999999999999999999999999999876 5689999999875321 1 2356999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++||+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||||+.+|++|+||||
T Consensus 89 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 89 KLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999987643322 122334456788999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 217 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGTP 217 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeCH
Confidence 9999999999999999999877999999999986 6788899999998 5899988875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=336.63 Aligned_cols=196 Identities=28% Similarity=0.410 Sum_probs=168.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 4579999999999999999999999999999999999876 568999999987643 2345679999999988999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+....+. . ..++++++++.+++.+..+... ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 90 ~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 90 RENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999988654321 1 1345788899999987766543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|+.++..+.+.|++++++|+|||++||+++ .+...+|++++|+ +|++++.|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~g~i~~~g 208 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIIN-KGKLIEEG 208 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 999999999999998777899999999986 4667899999998 47887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=342.24 Aligned_cols=205 Identities=28% Similarity=0.379 Sum_probs=172.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-cccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 4579999999999999999999999999999999999876 5689999999876432 224569999999988889999
Q ss_pred HHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 791 LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 791 ~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
+||+.+....+.. .........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~ 166 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999886543211 00122333456788999999977666543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 870 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|+ +|++++.|+.
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 221 (239)
T cd03296 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMN-KGRIEQVGTP 221 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEecCH
Confidence 9999999999999999765 899999999986 5678899999998 5899988875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=353.23 Aligned_cols=202 Identities=26% Similarity=0.375 Sum_probs=176.6
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 45679999999999999999999999999999999999877 568999999987643 23456799999999999999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||.||+.|.+.++. ...++..++++++++.+++.+..++.+ +.||||||||++||+||+.+|++|||||||+
T Consensus 91 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 91 YVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999998765542 122334456789999999998877664 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|+ +|++++.|+.
T Consensus 163 gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIIN-KGKIVADKKL 216 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999864 799999999986 6888899999998 5899999985
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=341.12 Aligned_cols=204 Identities=25% Similarity=0.316 Sum_probs=170.9
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCC-----CCCeeEEEEEECCccCCc-----ccccceEEEEcC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK-----TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQ 780 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~-----~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q 780 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.++.. ..+++.+||++|
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 88 (227)
T cd03260 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88 (227)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEec
Confidence 3457999999999999999999999999999999999987 5 568999999987532 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 781 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
++.++ .+||+||+.+....+.. .......++++++++.+++.+..+.... +.+||||||||++|||||+.+|++
T Consensus 89 ~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~l 162 (227)
T cd03260 89 KPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEV 162 (227)
T ss_pred Cchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCE
Confidence 98887 79999999886543311 1112234567889999999776554320 257999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+...+|++++|. +|++++.|+.
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 224 (227)
T cd03260 163 LLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLL-NGRLVEFGPT 224 (227)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEe-CCEEEEecCc
Confidence 9999999999999999999999999876 99999999986 5677899999998 5899988875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=338.79 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=170.7
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCCHH
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999876 568999999987643 23456799999999889999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
||+.+....+. ....+..++++++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 99987654331 223344567789999999987766544 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|++ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999986 57788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=336.87 Aligned_cols=193 Identities=24% Similarity=0.300 Sum_probs=143.0
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHhh
Q 001507 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 799 (1065)
Q Consensus 720 s~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~ 799 (1065)
.++|..||+++++||||-||||+.++|+|..+ +.+|+ .. .-.++|-||--.--...||++.+.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhh
Confidence 46788999999999999999999999999877 45665 11 1246888886444456799998754322
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHH
Q 001507 800 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879 (1065)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~ 879 (1065)
-+...+ -...++.+-|.|..+.+..+ .+|||||.|||+||.+|.++.+|.+||||++.||.+.+..+-
T Consensus 428 ~~~~~s-------~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGSS-------YFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhcccc-------hhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 111111 12357788888888887765 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC---CCCCchhHHHHHHHhcC
Q 001507 880 RTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG---PLGSKSCELIKYFEAVE 940 (1065)
Q Consensus 880 ~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g---~~~~~~~~~~~~~~~~~ 940 (1065)
+.||++... ++|.+++-||.-+ +--..||+++.. |+---+| ++....+.+-.|...++
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~~mr~GMN~FLk~l~ 557 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPMSMREGMNRFLKNLG 557 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCccHHHHHHHHHHHcC
Confidence 999999754 8999999999753 333468888875 3322222 12222334556666664
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=313.18 Aligned_cols=206 Identities=26% Similarity=0.401 Sum_probs=176.5
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 787 (1065)
.++.+|++||++++|||++||+|||||||||||+.|+|... +.+|++.+||.+... ..+.+..+..||+..+-..
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 56789999999999999999999999999999999999877 468999999998654 3456677999999888777
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHh------CCCce
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIV 861 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~------~p~il 861 (1065)
.||+|-+.++..-.. ......+..+..+++|...++.+++.+.. ..|||||||||.+||.|++ ++++|
T Consensus 90 Ftv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 90 FTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred eEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 899999998743211 11122345566889999999999988754 4799999999999999976 34689
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||||||.||...+..++++.|+++++|..|+++-||++. ...++|||++|. +|+++..|++.
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Grv~a~g~p~ 226 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGRVIASGSPQ 226 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCeEeecCCHH
Confidence 9999999999999999999999999999999999999985 678899999998 58999999874
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=388.42 Aligned_cols=201 Identities=26% Similarity=0.373 Sum_probs=177.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 789 (1065)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.+|||+|++.+++.+|
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 4679999999999999999999999999999999999987 568999999988643 234567999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|+||+.|.++++.. ..++.+++++++++.++|.+..++.+ ++|||||||||+||+||+.+|+||||||||+|
T Consensus 1020 V~E~L~f~~~lkg~---~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1020 VAEHILFYAQLKGR---SWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 99999998766532 22344567889999999988877654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+.+++.++++|++++ +|+|||++||+++ ++...+||+++|+ +|+++..|+.
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~-~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIIS-QGRLYCSGTP 1144 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 99999999999999985 6999999999986 5777899999998 5899999875
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=336.26 Aligned_cols=192 Identities=28% Similarity=0.399 Sum_probs=163.6
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCC-CCCCCCHH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-HSPGLTVL 791 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~-~~~~ltv~ 791 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.....++.+||++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 579999999999999999999999999999999999876 568999999987644445567999999974 33467999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
||+.+..... . ...++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D----AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 11245788999999987776654 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 920 (1065)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 56678999999985 6763
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=356.71 Aligned_cols=206 Identities=26% Similarity=0.375 Sum_probs=177.0
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEEEccccccCCCCC
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lT 96 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|++.|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 99999999876432 12456999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|+||+.+.+...+... ......++++++.+||.+..++.+ +
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPV-----G 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCch-----h
Confidence 9999988654332100 001224788999999988777665 4
Q ss_pred cCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCc
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~ 256 (1065)
.|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++++. +++|++++|+.+++..+||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE--GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998643 5677889999999999999999999999
Q ss_pred EEEEcCcchHHH
Q 001507 257 IVYQGPRVSVLD 268 (1065)
Q Consensus 257 i~~~G~~~~~~~ 268 (1065)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999888754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=363.80 Aligned_cols=215 Identities=21% Similarity=0.281 Sum_probs=182.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv 85 (1065)
+++++.++ +..+|+|+||++++||+++|+|||||||||||++|+|+..|+ +|+|.++|.++.... .++.++||
T Consensus 23 ~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 23 RNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred EeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEE
Confidence 44554443 246999999999999999999999999999999999999876 999999999875533 35679999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+|+++||.||+.|+.+.++.. ..+..++++++++.+||.+.
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~l~L~~~ 142 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLP----------------------------------KAEIASRVNEMLGLVHMQEF 142 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchh
Confidence 99999999999999999976432110 00112347889999999877
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.+.. +.+|||||||||+|||||+.+|++|||||||++||..++..+.+.|+++.++. +.+++.+||+.+++..+
T Consensus 143 ~~~~-----~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l 216 (377)
T PRK11607 143 AKRK-----PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTM 216 (377)
T ss_pred hcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHh
Confidence 6654 45799999999999999999999999999999999999999999999887654 56677799999999999
Q ss_pred cccEEEecCCcEEEEcCcchHH
Q 001507 246 FDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+|++++|++|+++..|+++++.
T Consensus 217 aDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 217 AGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred CCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999998874
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=366.59 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=181.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~y 84 (1065)
++++++.++ ++.+|+|+||++++|++++|+|||||||||||++|+|++.|+ +|+|.++|.++.... .++.++|
T Consensus 6 i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEE
Confidence 445555553 246999999999999999999999999999999999999876 999999998875432 2467999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|+|++.+++++||+||+.|+...++... .+...+++++++.+||.+
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~ 125 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAH 125 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChh
Confidence 9999999999999999998754321100 001234788999999987
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++. ++++++++|+.+++..
T Consensus 126 ~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~ 199 (369)
T PRK11000 126 LLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMT 199 (369)
T ss_pred hhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHH
Confidence 776654 4699999999999999999999999999999999999999999999987543 5667779999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+||+|++|++|++++.|+++++.
T Consensus 200 ~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 200 LADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999988774
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=338.41 Aligned_cols=193 Identities=31% Similarity=0.433 Sum_probs=165.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-------cccceEEEEcCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIHS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~~~v~q~~~~~ 785 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 579999999999999999999999999999999999876 5689999999876421 1245799999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+||+||+.+....+. .......+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998754432 122334456889999999987666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 866 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ ..+|++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999976 5899999999986 34 48999999985 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=333.53 Aligned_cols=221 Identities=24% Similarity=0.329 Sum_probs=191.3
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-------CCceEEEEcccccc
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQ 91 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~yv~Q~~~~ 91 (1065)
..-++|+|++++.||+..|||-||||||||+++|.+++.|+ .|+|.++|.++.... .++.+++|+|+..+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 45689999999999999999999999999999999999876 999999999876543 24679999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccccccc
Q 001507 92 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 171 (1065)
Q Consensus 92 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg 171 (1065)
+|+.||.||..|+.+.++... .+.++++.+.|+..||+...+..
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~----------------------------------~er~~~a~~~l~~VgL~~~~~~y-- 161 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPK----------------------------------AEREERALEALELVGLEGYADKY-- 161 (386)
T ss_pred ccchhHhhhhhcceeecCCCH----------------------------------HHHHHHHHHHHHHcCchhhhhcC--
Confidence 999999999999988876432 11234578899999999988765
Q ss_pred CcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEE
Q 001507 172 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 251 (1065)
Q Consensus 172 ~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~ 251 (1065)
+++||||+||||.|||||+.+|+||++|||+|+|||--+.++.+.|.++.+.. ++||++++||.+|++++.|||.+
T Consensus 162 ---p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 162 ---PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred ---cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceEEE
Confidence 45699999999999999999999999999999999999999999999988765 56677799999999999999999
Q ss_pred ecCCcEEEEcCcchHHHHHHhCCCCCCCCCChhHHHHHh
Q 001507 252 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 290 (1065)
Q Consensus 252 l~~G~i~~~G~~~~~~~~f~~lG~~~p~~~~~~d~l~~~ 290 (1065)
|.+|+|+..|++++++. .|.+...++|...+
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999974 35554455665554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=341.80 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=177.2
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.++ ...+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++
T Consensus 4 ~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 4 RGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred EEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhc
Confidence 34555443 246999999999999999999999999999999999999775 999999998765432 245
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.++...... .. .......++++++.+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~---~~------------------------------~~~~~~~~~~~l~~~ 124 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTR---LS------------------------------EEEIREIVLEKLEAV 124 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccC---CC------------------------------HHHHHHHHHHHHHHc
Confidence 799999999889999999999886432100 00 000122367889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++++. .+++|++++|+.+
T Consensus 125 ~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~ 198 (235)
T cd03261 125 GLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLD 198 (235)
T ss_pred CCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHH
Confidence 9987666554 469999999999999999999999999999999999999999999998653 3567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
++..+||++++|++|++++.|+++++
T Consensus 199 ~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 199 TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 99999999999999999999987665
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=340.08 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=172.3
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCCCC
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~~~ 787 (1065)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999877 5689999999876431 235679999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
+|++||+.+....+. .......+.++++++.+++.+..+... ..||||||||++|||+|+.+|++|+|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654332 223334556789999999987766543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|. +|++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999765 899999999986 5677899999998 5899988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=356.25 Aligned_cols=215 Identities=27% Similarity=0.362 Sum_probs=181.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~y 84 (1065)
++++..++ ++.+|+||||+|++|++++|+||||||||||+++|+|++.|+ +|+|.++|.++... ..++.++|
T Consensus 45 ~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 45 AGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred EEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEE
Confidence 44444443 356999999999999999999999999999999999999876 99999999987543 23467999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+||+.|.....+... .+....++++++.+||.+
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~ 164 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLES 164 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCch
Confidence 9999998999999999987544321100 001123677889999998
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.++ +||||||||++||+||+.+|++++|||||+|||+.++.++++.|+++.. .+++|++++|+.+++.+
T Consensus 165 ~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 165 KADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAER 237 (340)
T ss_pred hhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHH
Confidence 8877664 5999999999999999999999999999999999999999999999865 35678889999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+||+|++|++|++++.|+++++..
T Consensus 238 ~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 238 LCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred hCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999988754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=342.57 Aligned_cols=204 Identities=28% Similarity=0.378 Sum_probs=170.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 579999999999999999999999999999999999876 468999999987642 224567999999999999
Q ss_pred CCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 787 GLTVLESLLFSAWLRL-----PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.+||+||+.+...... ..........++++++++.+++.+..+... ..|||||||||+|||||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532100 001111233456788999999977665543 579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLK-DGRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeecCH
Confidence 999999999999999999999999764 899999999987 5777899999998 5899988875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=359.68 Aligned_cols=219 Identities=23% Similarity=0.338 Sum_probs=182.2
Q ss_pred HHHhhhhcCC-ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------C
Q 001507 6 LRQLRIYRGN-RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------P 78 (1065)
Q Consensus 6 ~~~~~~~~~~-~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~ 78 (1065)
++++++.++. ..++.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHH
Confidence 3456665542 12357999999999999999999999999999999999999876 999999999875432 1
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++.+||+||+.++....+... .+...+++++++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~ 126 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLE 126 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHH
Confidence 4579999999998999999999998654321100 001224778899
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||++..++.+ +.|||||||||+|||||+.+|+++||||||+|||+.++..+++.|+++++. .+++|++++|+
T Consensus 127 ~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~ 200 (343)
T PRK11153 127 LVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHE 200 (343)
T ss_pred HcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 999988776654 469999999999999999999999999999999999999999999998754 35677779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.++||++++|++|++++.|+++++.
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999987764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=335.81 Aligned_cols=200 Identities=30% Similarity=0.449 Sum_probs=171.4
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCCH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 579999999999999999999999999999999999876 568999999987642 2345679999999998889999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+....+. .......++++++++.+++.+..++.. ..||+|||||++|||+|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654332 122333456788999999977666543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++|. +|++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMS-DGKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 99999999999999875 699999999987 4667899999998 5899988864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=339.29 Aligned_cols=203 Identities=25% Similarity=0.372 Sum_probs=173.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~~~~ 786 (1065)
++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 4579999999999999999999999999999999999876 568999999987642 234567999999998888
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+||+||+.+...... ........+.+.++++.+++.+..+... ..||||||||++|||||+.+|++|+||||
T Consensus 91 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP 163 (240)
T PRK09493 91 HLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEP 163 (240)
T ss_pred CCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999987642111 1223344556789999999977666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 220 (240)
T PRK09493 164 TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFID-KGRIAEDGDP 220 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeCCH
Confidence 9999999999999999999877999999999986 5667899999998 5899998875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.54 Aligned_cols=206 Identities=38% Similarity=0.706 Sum_probs=171.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC-CCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~-~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.++....+++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 3679999999999999999999999999999999999865 123689999999877544566789999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHH-HHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEE-VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
+||+.|......+.........+.+++ .++.+++.+..++.+ +.||||||||++|||+|+.+|++|+|||||+|
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~g 173 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSG 173 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcC
Confidence 999998755433221122222334455 888888877665543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|. +|++++.|
T Consensus 174 LD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~-~G~i~~~g 226 (226)
T cd03234 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLS-SGEIVYSG 226 (226)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEe-CCEEEecC
Confidence 999999999999999877789999999998446888999999998 47888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=347.01 Aligned_cols=201 Identities=24% Similarity=0.345 Sum_probs=171.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCC-CCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~-~~~ 786 (1065)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+|||+|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 469999999999999999999999999999999999877 568999999988643 234578999999863 334
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC--ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
..||+||+.|..... ....++..++++++++.++|. +..++. +..||||||||++|||||+.+|++||||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865432 233445556788999999996 455544 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.|++
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999765 899999999986 56678999999984 899999875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=337.42 Aligned_cols=209 Identities=30% Similarity=0.420 Sum_probs=172.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv 85 (1065)
+++++.+++ +.+|+|+||++++||+++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .++.++|+
T Consensus 4 ~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 4 KGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred eeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEE
Confidence 345554432 46999999999999999999999999999999999998775 999999998775432 24579999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+++.+||+||+.++....+. . . ......++++++.+||.+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~----~---~---------------------------~~~~~~~~~~l~~~~l~~~ 123 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGV----P---K---------------------------AEIRARVRELLELVGLEGL 123 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCC----C---H---------------------------HHHHHHHHHHHHHcCChhh
Confidence 9999888899999999876432110 0 0 0011236788999999877
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+++.|+++++. .+++|++++|+.+++.++
T Consensus 124 ~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~ 197 (213)
T cd03259 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALAL 197 (213)
T ss_pred hhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHh
Confidence 66654 469999999999999999999999999999999999999999999998653 356777799999999999
Q ss_pred cccEEEecCCcEEEEc
Q 001507 246 FDDVILLSEGQIVYQG 261 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G 261 (1065)
||++++|++|++++.|
T Consensus 198 ~d~v~~l~~G~i~~~g 213 (213)
T cd03259 198 ADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCEEEEEECCEEEecC
Confidence 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=340.10 Aligned_cols=201 Identities=26% Similarity=0.350 Sum_probs=171.3
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+.+||++|++.+++.+||.
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 4579999999999999999999999999999999999876 568999999987643 234589999999888889999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
||+.+....+. .......++++++++.+++.+..+... ..||||||||++|||+|+.+|++|||||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 89 DNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99987643321 223334456889999999977666543 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEeCCC
Q 001507 872 ARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 925 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~ 925 (1065)
+.++..+.+.|+++++ +|+|||++||+++ .+...+|++++|.+ +|+++..++.
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999854 5899999999987 57788999999984 5899888764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=336.09 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=168.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c-ccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (222)
T cd03224 11 GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFP 88 (222)
T ss_pred CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCC
Confidence 34579999999999999999999999999999999999877 5689999999875431 1 2456999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
.+|++||+.+...... .....+.+.++++.+ ++.+..+.. +..||||||||++|||||+.+|++|+|||
T Consensus 89 ~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 89 ELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred CCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999988654321 122334566777777 465555543 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|. +|+++..|+.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLE-RGRVVLEGTA 216 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEee-CCeEEEeCCH
Confidence 99999999999999999999777899999999986 5678899999998 5899988864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=342.94 Aligned_cols=207 Identities=23% Similarity=0.273 Sum_probs=175.4
Q ss_pred cccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c----ccceEEEEc
Q 001507 707 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCE 779 (1065)
Q Consensus 707 ~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~~v~ 779 (1065)
.+.++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.++|++
T Consensus 31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 334566789999999999999999999999999999999999876 5689999999875421 1 235799999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 780 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 780 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
|++.+++.+||+||+.+...... .......++++++++.+++.+..+..+ ..||||||||++|||||+.+|+
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCC
Confidence 99999989999999988654321 122334456788999999987766654 4799999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 245 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTP 245 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999999754 899999999986 5678899999998 5899988875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=334.72 Aligned_cols=200 Identities=28% Similarity=0.392 Sum_probs=169.4
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCccc------c-cceEEEEcCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET------F-ARISGYCEQNDIHS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~------~-~~~~~~v~q~~~~~ 785 (1065)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.... + ++.++|++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 579999999999999999999999999999999999876 56899999998764311 2 25699999999888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+|++||+.+....+. .......++++++++.+++.+..+... ..||||||||++|||+|+.+|++|||||
T Consensus 100 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999988654321 122344466889999999987666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ ..+|++++|. +|+++..++.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~-~G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMR-DGRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEE-CCEEEEEecc
Confidence 9999999999999999999975 5899999999986 34 4468999997 5899988875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=338.84 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=171.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 569999999999999999999999999999999999876 568999999987542 234567999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc--cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
++||+.+....+. .......+.++++++.+++.+ ..+.. +..|||||||||+|||||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654331 223344566789999999975 55543 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK-NGEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999764 899999999986 5678899999998 5899988874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=333.85 Aligned_cols=193 Identities=25% Similarity=0.329 Sum_probs=165.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~ 785 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++.++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 3569999999999999999999999999999999999876 5689999999876421 2456799999999988
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+|++||+.+....+. .......++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 92 PDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988754321 122334456789999999976655543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
||+|||+.++..+.+.|+++.++|+|||++||+++ ++...+|++++|++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 164 PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 99999999999999999998777999999999986 57778999999975
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=340.72 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=172.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----------ccccceEEEEcC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQ 780 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~~~v~q 780 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 4579999999999999999999999999999999999876 568999999987532 123567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 781 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
++.+++.+|++||+.+...... ........+.++++++.+++.+..+... ..||||||||++|||+|+.+|++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~l 165 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEV 165 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCE
Confidence 9989989999999987543111 1223344556788999999987665543 57999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 166 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 228 (250)
T PRK11264 166 ILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMD-QGRIVEQGPA 228 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999999877999999999986 5677899999998 5899988874
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=341.65 Aligned_cols=206 Identities=27% Similarity=0.340 Sum_probs=170.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~~ 785 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 4569999999999999999999999999999999999876 568999999987532 12456799999999899
Q ss_pred CCCCHHHHHHHHhhccC-----CCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 786 PGLTVLESLLFSAWLRL-----PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
+.+||+||+.+...... ..........++++++++.+++.+..+... ..||||||||++|||||+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999976421100 000111233456788999999977666543 57999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|. +|++++.|+..
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~ 231 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLK-AGEIVFDGAPS 231 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEE-CCEEEecCCHH
Confidence 9999999999999999999999999754 899999999986 4667899999998 58999888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=342.14 Aligned_cols=203 Identities=19% Similarity=0.300 Sum_probs=172.1
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~ 785 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 4579999999999999999999999999999999999876 5689999999876421 2345799999999899
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+|+.||+.+...... ........+.+.++++.+++.+..+..+ ..||||||||++|||+|+.+|++|||||
T Consensus 97 ~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDE 169 (269)
T PRK11831 97 TDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDE 169 (269)
T ss_pred CCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999987543211 1123334456788899999987766643 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 228 (269)
T PRK11831 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKIVAHGSA 228 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999765 899999999976 5778899999998 5899998875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=333.40 Aligned_cols=194 Identities=27% Similarity=0.357 Sum_probs=166.4
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999876 568999999987642 124567999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++||+.+....+. ...+...++++++++.+++.+..+... ..||||||||++|||||+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654332 223344556789999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|.+ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999986 56677999999985 55
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=341.22 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=171.3
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .++..
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 469999999999999999999999999999999999876 568999999987643 234567999999863 44568
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||.||+.|..... ........++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 96 TVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred cHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999998864322 2233344456889999999987776654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|+ +|++++.|++
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 222 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLK-EGRVLAEGDK 222 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999877999999999986 4667899999998 5899999875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=330.98 Aligned_cols=198 Identities=33% Similarity=0.490 Sum_probs=168.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 789 (1065)
++.+|+|+||++++| ++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 457999999999999 999999999999999999999876 568999999987543 234567999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|.||+.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 89 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 160 (211)
T cd03264 89 VREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160 (211)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999988654432 122333456788999999987666543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++ |+++..|
T Consensus 161 LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 161 LDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999875 599999999986 46678999999984 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=333.05 Aligned_cols=201 Identities=27% Similarity=0.425 Sum_probs=164.7
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCC--CCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~--~~l 788 (1065)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+. +.+
T Consensus 10 ~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~ 85 (213)
T cd03235 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPI 85 (213)
T ss_pred CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCC
Confidence 34579999999999999999999999999999999999876 56899999998653 3456799999998763 347
Q ss_pred CHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 789 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
||+||+.+....... .........++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 86 SVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred cHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999999875432110 00111233456788999999976666543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +| +++.|
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~~-~~~~g 213 (213)
T cd03235 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLN-RT-VVASG 213 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEc-Cc-EeecC
Confidence 999999999999999999777999999999986 5677899999997 45 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=344.87 Aligned_cols=202 Identities=25% Similarity=0.336 Sum_probs=170.5
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC-------------------------
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------------------------- 767 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~------------------------- 767 (1065)
..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 369999999999999999999999999999999999877 46899999986531
Q ss_pred --cccccceEEEEcCCC-CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHH
Q 001507 768 --QETFARISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTE 843 (1065)
Q Consensus 768 --~~~~~~~~~~v~q~~-~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 843 (1065)
...+++.+|||+|++ ..+...||+||+.|+.... ....++..++++++++.+||. +..++.. ..||||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgG 169 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSP-----FELSGG 169 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHH
Confidence 123456799999985 3344579999999875432 233445556789999999996 5666543 589999
Q ss_pred HHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 844 qrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|+ +|++++.|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~-~G~i~~~g 247 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFK-DGKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEE-CCEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999976 5778899999997 58999999
Q ss_pred CCC
Q 001507 924 PLG 926 (1065)
Q Consensus 924 ~~~ 926 (1065)
++.
T Consensus 248 ~~~ 250 (305)
T PRK13651 248 DTY 250 (305)
T ss_pred CHH
Confidence 863
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=343.90 Aligned_cols=201 Identities=25% Similarity=0.321 Sum_probs=169.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCC-C
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 784 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~-~ 784 (1065)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.. ..+++.+|||+|++. .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 469999999999999999999999999999999999877 568999999987631 234567999999862 2
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+...||+||+.|+.... .....+..++++++++.++|. ...++.+ ..|||||||||+|||+|+.+|++|||
T Consensus 98 l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llll 169 (290)
T PRK13634 98 LFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVL 169 (290)
T ss_pred hhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999999875432 123344456788999999996 5555543 58999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++++|. +|++++.|++
T Consensus 170 DEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G~i~~~g~~ 230 (290)
T PRK13634 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KGTVFLQGTP 230 (290)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999765 999999999987 5778899999998 5899999975
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=332.44 Aligned_cols=196 Identities=26% Similarity=0.321 Sum_probs=166.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 579999999999999999999999999999999999876 5689999999875321 24567999999998888
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++||+.+....+. ....+..+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654331 223334456788999999977665543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 920 (1065)
|+|||+.++..+.+.|++++++|.|||++||+++ ++...+|++++|.+ |+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999777899999999986 56677999999985 6754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=361.86 Aligned_cols=213 Identities=28% Similarity=0.438 Sum_probs=176.1
Q ss_pred ceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 001507 685 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764 (1065)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~ 764 (1065)
+-.++++|++|.+.. .+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+.+ |.+|+|.+||.
T Consensus 469 ~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg~ 535 (709)
T COG2274 469 QGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGV 535 (709)
T ss_pred CceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCE
Confidence 457899999988742 23479999999999999999999999999999999999987 67999999999
Q ss_pred cCC---cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-------cccCcccC
Q 001507 765 PKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGL 834 (1065)
Q Consensus 765 ~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~ 834 (1065)
++. ...+|+.+|||+||+.++.+ |++||+.++. | ..+. +.+.++++..|..+ -.++.++.
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhccccccccccc
Confidence 864 46788999999999988865 9999998752 2 2221 22344444444332 22444444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 835 ~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
. ..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|.++. +|+|+|+++|+++ ..+.+|+++||+
T Consensus 606 ~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~ 681 (709)
T COG2274 606 G-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLD 681 (709)
T ss_pred C-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEcc
Confidence 3 45799999999999999999999999999999999999999999999975 5899999999976 678899999998
Q ss_pred cCcEEEEeCCC
Q 001507 915 RGGELIYAGPL 925 (1065)
Q Consensus 915 ~gg~~~~~g~~ 925 (1065)
+|+++..|+.
T Consensus 682 -~Gkiv~~gs~ 691 (709)
T COG2274 682 -QGKIVEQGSH 691 (709)
T ss_pred -CCceeccCCH
Confidence 5899999986
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=334.98 Aligned_cols=204 Identities=29% Similarity=0.371 Sum_probs=172.4
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEEEccccccCCCCC
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lT 96 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999998775 99999999876432 12357999999998899999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|+||+.+.....+... .+....++++++.+||++..++.+ .
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 9999988643321100 001224788899999987766655 4
Q ss_pred cCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCc
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~ 256 (1065)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..++|++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999998753 25677779999999999999999999999
Q ss_pred EEEEcCcch
Q 001507 257 IVYQGPRVS 265 (1065)
Q Consensus 257 i~~~G~~~~ 265 (1065)
+++.|++++
T Consensus 210 i~~~~~~~~ 218 (220)
T cd03265 210 IIAEGTPEE 218 (220)
T ss_pred EEEeCChHH
Confidence 999987654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=348.13 Aligned_cols=218 Identities=26% Similarity=0.352 Sum_probs=177.0
Q ss_pred HHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-----CC
Q 001507 7 RQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-----~~ 79 (1065)
+++++.++... .+.+|+||||+|++||+++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .+
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 6 ENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHh
Confidence 44555553221 246999999999999999999999999999999999999876 999999998875421 24
Q ss_pred ceEEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 80 RTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 80 ~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
+.++||+|++. .+...||+||+.|+....+.. ..+...+++++++
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 128 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMN 128 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHH
Confidence 67999999863 344579999998864322110 0011234788999
Q ss_pred HhCCc--ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 001507 159 ILGLD--TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 159 ~lgL~--~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~ 236 (1065)
.+||. +..|+. ++.||||||||++|||||+.+|++|+|||||+|||+.++.++++.|+++++. .++||++++
T Consensus 129 ~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vt 202 (287)
T PRK13637 129 IVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVS 202 (287)
T ss_pred HcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 99996 445544 4579999999999999999999999999999999999999999999998753 367788899
Q ss_pred CCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 237 ~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
|+.+++..+||+|++|++|++++.|+++++.
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999988764
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=335.06 Aligned_cols=212 Identities=29% Similarity=0.380 Sum_probs=174.2
Q ss_pred HHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEE
Q 001507 7 RQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv 85 (1065)
+++++.+++. ..+.+|+|+||+|++|++++|+||||||||||+++|+|.+.|. +|+|.++|.++.. .++.++|+
T Consensus 4 ~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v 78 (220)
T cd03293 4 RNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYV 78 (220)
T ss_pred EEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEE
Confidence 3455554331 1156999999999999999999999999999999999998775 9999999987653 34679999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+++.+||+||+.++...++... ......++++++.+||.+.
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~ 124 (220)
T cd03293 79 FQQDALLPWLTVLDNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGF 124 (220)
T ss_pred ecccccccCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhh
Confidence 999988888999999988643221000 0011237788999999876
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+++.|+++.+. .+++|++++|+.+++..+
T Consensus 125 ~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~ 198 (220)
T cd03293 125 ENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFL 198 (220)
T ss_pred hhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHh
Confidence 66554 469999999999999999999999999999999999999999999988643 356777799999999999
Q ss_pred cccEEEec--CCcEEEEcCc
Q 001507 246 FDDVILLS--EGQIVYQGPR 263 (1065)
Q Consensus 246 ~D~v~~l~--~G~i~~~G~~ 263 (1065)
||++++|+ +|++++.++.
T Consensus 199 ~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 199 ADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEEEECCCCEEEEEEEe
Confidence 99999999 7999988865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=336.79 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=172.8
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFR 91 (241)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccc
Confidence 34579999999999999999999999999999999999876 568999999987643 123467999999999888
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++||+.+....+. .....+....++++++.+++.+..+... +.||||||||++|||+|+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 92 RLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999987643221 1122334456788999999876655443 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.+++++++|+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 221 (241)
T PRK10895 165 FAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVS-QGHLIAHGTP 221 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEe-CCeEEeeCCH
Confidence 9999999999999999998877999999999986 5778899999998 5799988875
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=339.89 Aligned_cols=219 Identities=28% Similarity=0.376 Sum_probs=178.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~y 84 (1065)
++++++.+++ ..+|+|+|+++++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .++.++|
T Consensus 5 ~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 5 VRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEE
Confidence 3455555532 46999999999999999999999999999999999998775 999999998765432 2357999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+||+.++........+.+ .......++++++.+||.+
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~ 128 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPP------------------------------EAEIRAKVHELLKLVQLDW 128 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCC------------------------------HHHHHHHHHHHHHHcCChh
Confidence 9999988888999999988643221000000 0001123678899999987
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..
T Consensus 129 ~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~ 202 (239)
T cd03296 129 LADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE-LHVTTVFVTHDQEEALE 202 (239)
T ss_pred hhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHH
Confidence 666554 469999999999999999999999999999999999999999999998753 35677779999999999
Q ss_pred hcccEEEecCCcEEEEcCcchH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+||++++|++|++++.|+++++
T Consensus 203 ~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 203 VADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred hCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999987765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=301.82 Aligned_cols=219 Identities=24% Similarity=0.335 Sum_probs=184.8
Q ss_pred HHHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEE
Q 001507 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAY 84 (1065)
Q Consensus 5 ~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~y 84 (1065)
.+.+++..+.++. +.+|+|+|++|.+||.++++||||||||||||+++|+..|. .|+|.+||++++-.. ..-|.
T Consensus 5 ~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPg--aergv 78 (259)
T COG4525 5 NVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPG--AERGV 78 (259)
T ss_pred ehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCC--cccee
Confidence 3556666665543 67999999999999999999999999999999999999876 999999999876433 23499
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|+|++.++|-+||.||+.|+.++++..+. +....+.+.+...||++
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~ 124 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEG 124 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCccc
Confidence 99999999999999999999998875421 11234778899999988
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..+. ++-+|||||||||.|||||+.+|+.|+||||+++||+-+++++.+.|-++.+.. ++-++.+||+.+|+.-
T Consensus 125 ~~~~-----~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t-gk~~lliTH~ieEAlf 198 (259)
T COG4525 125 AEHK-----YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET-GKQVLLITHDIEEALF 198 (259)
T ss_pred cccc-----ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHh
Confidence 6654 456799999999999999999999999999999999999999999998887764 4556669999999999
Q ss_pred hcccEEEecC--CcEEEEcCcchHHHH
Q 001507 245 LFDDVILLSE--GQIVYQGPRVSVLDF 269 (1065)
Q Consensus 245 ~~D~v~~l~~--G~i~~~G~~~~~~~~ 269 (1065)
+++++++|+- |+|+..=++.-...|
T Consensus 199 latrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 199 LATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred hhheeEEecCCCceeeEecCCCHHHHh
Confidence 9999999974 899988777644443
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=331.14 Aligned_cols=192 Identities=28% Similarity=0.384 Sum_probs=162.5
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 579999999999999999999999999999999999876 568999999987542 234567999999974 35678
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|++||+.+....+. .......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987643221 122333456788999999976666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|.+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999877999999999986 56677999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=331.97 Aligned_cols=196 Identities=27% Similarity=0.371 Sum_probs=166.6
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~~~~ 786 (1065)
++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 4579999999999999999999999999999999999876 568999999987632 234567999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++||+.+...... .....+..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+||||
T Consensus 90 ~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP 162 (213)
T cd03262 90 HLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEP 162 (213)
T ss_pred CCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999987642111 1223334556788999999977666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |+
T Consensus 163 ~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999877899999999986 56778999999985 55
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=325.33 Aligned_cols=188 Identities=20% Similarity=0.297 Sum_probs=145.7
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCC--CCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND--IHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~--~~~~~l 788 (1065)
+.++++++++|-|.--..+||+||||.||||||++|.|... +..|+..-| .+-.+|+..|.. .+...-
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--------hrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--------HRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--------ceeeeechhhhhHHhhcccc
Confidence 56788999999999999999999999999999999999877 456765433 233588888864 345566
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|.-|.|.-. . +.+.. .....+-.+||...++++- +..||||||-||++|-.-+..|+||||||||+
T Consensus 668 tp~EyLqr~--F----Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 668 TPVEYLQRK--F----NLPYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred CHHHHHHHh--c----CCChH----HHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 777777421 1 11222 2356778888888887753 46799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+||.++...+-+.|++. ...||+++||-+. +.+.-..+.|+.+.|.-...|...
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccccHH
Confidence 99999999999999885 5689999999763 445556778887766655666553
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=342.03 Aligned_cols=214 Identities=22% Similarity=0.304 Sum_probs=177.8
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-------CCc
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPR 80 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-------~~~ 80 (1065)
+++..++ ...+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++
T Consensus 29 ~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 29 EILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcC
Confidence 4444443 346899999999999999999999999999999999999775 999999998765421 134
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.+.....+.. . ......++++++.+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~l~~~ 148 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVP---R-------------------------------AEREERAAEALELV 148 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCC---H-------------------------------HHHHHHHHHHHHHc
Confidence 6999999999898999999998864322100 0 00112367889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.++ .|||||||||+|||||+.+|+|+||||||+|||+.++..+.+.|+++++. .+++|++++|+.+
T Consensus 149 ~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~ 222 (269)
T cd03294 149 GLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLD 222 (269)
T ss_pred CCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 99877776654 69999999999999999999999999999999999999999999998653 3567778999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++.++||++++|++|++++.|+++++.
T Consensus 223 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 223 EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999887664
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=301.13 Aligned_cols=200 Identities=28% Similarity=0.386 Sum_probs=177.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
+.+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||++++... ..-|.|+|++.++|.+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPg--aergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPG--AERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCC--ccceeEeccCccchhhHHHH
Confidence 459999999999999999999999999999999999988 56899999999875432 22489999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCH
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~ 872 (1065)
|+.|+.+++. +.+.++.+++.+.+..+||.+..++.+ .+||||||||+.|||||..+|++|+||||++.||.
T Consensus 94 NvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 9999988874 567888899999999999998887765 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEec-CcEEEEeCCC
Q 001507 873 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 925 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~-gg~~~~~g~~ 925 (1065)
-++++++++|-++++ .|+.++++||+.+ +..-.++++++|+. .|+++..-++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999875 4999999999987 45556899999983 2688877665
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=364.77 Aligned_cols=214 Identities=25% Similarity=0.436 Sum_probs=179.7
Q ss_pred ceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc
Q 001507 685 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764 (1065)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~ 764 (1065)
.-.++|+|+++.++. .++.+||+|+||+|+|||.+||+||||+||||+.++|-.... |.+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~----------Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPT----------RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCC----------CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 346899999998864 346789999999999999999999999999999999998876 67999999999
Q ss_pred cCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHH-------cCCCccccCcccC
Q 001507 765 PKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL-------VELTSLSGALIGL 834 (1065)
Q Consensus 765 ~~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~~ 834 (1065)
|+.+ ..+++.+|+|.|+|.+|.. |++|||.|+.. ..+.++ ++.+.+. .++.+-.|+.+|.
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VGE 600 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEE----IEAAAKMANAHEFITNFPDGYNTVVGE 600 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCccccccccCC
Confidence 8754 5578899999999999965 99999999753 223222 2222222 2345556777876
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 835 ~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
.+ ..||||||||++|||||++||+||||||+||+||.++...|++.|.++.+ ++|||+|+|+++ ..+.+|+|++++
T Consensus 601 kG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 601 KG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVID 676 (716)
T ss_pred cc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEc
Confidence 54 47999999999999999999999999999999999999999999998764 699999999975 678899999998
Q ss_pred cCcEEEEeCCC
Q 001507 915 RGGELIYAGPL 925 (1065)
Q Consensus 915 ~gg~~~~~g~~ 925 (1065)
+|+++..|..
T Consensus 677 -~G~V~E~G~h 686 (716)
T KOG0058|consen 677 -KGRVVEMGTH 686 (716)
T ss_pred -CCeEEecccH
Confidence 5899999964
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=336.76 Aligned_cols=206 Identities=21% Similarity=0.287 Sum_probs=174.0
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 12 ~l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRY-------------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 36677776554 33569999999999999999999999999999999999876 5689999999764
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHH
Q 001507 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 846 (1065)
Q Consensus 767 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 846 (1065)
. .+++.++|++|++.+++.+||+||+.+... . ...+++.++++.+++.+..+... ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 345679999999988888999999987421 0 12345788999999987666543 579999999
Q ss_pred HHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 847 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 847 r~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+...+|++++|. +|++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~-~G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIE-EGKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 4677899999998 4789887764
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=341.11 Aligned_cols=201 Identities=27% Similarity=0.359 Sum_probs=170.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCC--C
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 783 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~--~ 783 (1065)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|+++|.++.. ..+++.+|||+|++ .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 359999999999999999999999999999999999877 568999999987631 23466799999986 4
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
++. .||.|++.|+.... .....+..+++.++++.++|. +..++. +..||||||||++|||+|+.+|++||
T Consensus 97 l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~ill 167 (288)
T PRK13643 97 LFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLV 167 (288)
T ss_pred ccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 69999999875432 123445566788999999995 355543 35899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|. +|++++.|++.
T Consensus 168 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~-~G~i~~~g~~~ 229 (288)
T PRK13643 168 LDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLE-KGHIISCGTPS 229 (288)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999999999877999999999986 5678899999998 58999999863
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=337.63 Aligned_cols=217 Identities=24% Similarity=0.357 Sum_probs=178.3
Q ss_pred HHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CC
Q 001507 7 RQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PP 79 (1065)
Q Consensus 7 ~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~ 79 (1065)
+++++.++++ ...++|+|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+
T Consensus 5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 5 KNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred ecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHH
Confidence 4555555432 1136999999999999999999999999999999999999875 999999998875432 13
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++.+|++||+.+.....+... ......++++++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~ 127 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLEL 127 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHH
Confidence 569999999998999999999988643221000 0011236788999
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||++..++.+ ..|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++++. ++++|++++|+.
T Consensus 128 ~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~ 201 (233)
T cd03258 128 VGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEM 201 (233)
T ss_pred CCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 99987666544 469999999999999999999999999999999999999999999998653 356777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+++..++|++++|++|++++.|+.+++
T Consensus 202 ~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 202 EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999987665
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=294.96 Aligned_cols=199 Identities=30% Similarity=0.406 Sum_probs=171.2
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND 782 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~ 782 (1065)
.+...||++|++.|++||.+||+|||||||||||-+|+|+.. +.+|+|.+.|++... ..+.+.+|||+|..
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 356789999999999999999999999999999999999987 569999999988642 12456899999999
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
.+.|+||..||+.....++... .........+.++.+||.+-.+... .+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEe
Confidence 9999999999999888777532 1223345678899999987665543 5899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 921 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 921 (1065)
.||||-+||.++...|.+++-.+.+ .|.|.|++||||. +...|||++-|.. |+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 9999999999999999999999864 4999999999985 6678999999985 78764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=348.16 Aligned_cols=215 Identities=28% Similarity=0.367 Sum_probs=178.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC--CCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~--~~~~~~y 84 (1065)
+++++.++ +..+|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++|
T Consensus 8 ~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 8 VGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred EeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEE
Confidence 44555443 246999999999999999999999999999999999998775 999999998764321 2467999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+||+.+.....+... ......++++++.+||.+
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~ 127 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLES 127 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChh
Confidence 9999988899999999986443221000 001123677889999988
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.++ .|||||||||+||+||+.+|++++|||||+|||+.++..+++.|+++++ .+++|++++|+.+++.+
T Consensus 128 ~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~g~til~~sH~~~~~~~ 200 (303)
T TIGR01288 128 KADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAER 200 (303)
T ss_pred HhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHH
Confidence 7777654 5999999999999999999999999999999999999999999999865 35677789999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+||++++|++|++++.|+++++..
T Consensus 201 ~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 201 LCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred hCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999888753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=337.12 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=171.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----------------ccccceE
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARIS 775 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~~ 775 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 4579999999999999999999999999999999999876 568999999986531 1345679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccc-cCcccCCCCCCCCHHHHHHHHHHHH
Q 001507 776 GYCEQNDIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVE 853 (1065)
Q Consensus 776 ~~v~q~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGqrqr~~ia~~ 853 (1065)
+|++|++.+++.+|++||+.+... .. ........+++.++++.+++.+.. +.. ...||||||||++||||
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~lara 166 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARA 166 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 999999999999999999987542 21 122344456678899999997653 433 35799999999999999
Q ss_pred HHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 854 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 854 l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+.
T Consensus 167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999877999999999986 56678999999984 899988874
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=329.47 Aligned_cols=198 Identities=25% Similarity=0.376 Sum_probs=170.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .+.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 4579999999999999999999999999999999999876 56899999998764322 25699999999888889999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
||+.+....+. .. .+.+.++++.+++.+..+... ..||||||||++|||||+.+|++|+|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654331 11 234678899999987766543 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|. +|++++.|++.
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 209 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIIS-EGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEe-CCEEEEecChh
Confidence 99999999999999777999999999986 5678899999998 58999998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=333.15 Aligned_cols=200 Identities=25% Similarity=0.310 Sum_probs=163.5
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCC--CCC
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHS 785 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~--~~~ 785 (1065)
.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999876 568999999987643 23456799999998 466
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
+.+||+||+.+........ .........++++++.+++. ...+... ..||||||||++|||+|+.+|++|+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 7899999998765433211 11111122235788888884 4444433 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|. +|+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMY-AGKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEe-CCEEEecC
Confidence 999999999999999999999765 899999999986 5666899999998 57887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=335.83 Aligned_cols=206 Identities=24% Similarity=0.339 Sum_probs=169.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.+++. .+.+|+|+|+++++|++++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .++
T Consensus 5 ~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 5 EQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred EEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHH
Confidence 4455554321 246999999999999999999999999999999999998775 999999998765321 235
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.++....+... ...+.+++++++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~ 126 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKV 126 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHc
Confidence 79999999998999999999988654221000 00122477889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ .+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|++++|+.+
T Consensus 127 ~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~~ 199 (216)
T TIGR00960 127 GLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDIN 199 (216)
T ss_pred CChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 9987766554 469999999999999999999999999999999999999999999988642 566777999999
Q ss_pred HHHhhcccEEEecCCcE
Q 001507 241 EAYELFDDVILLSEGQI 257 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i 257 (1065)
++..+||++++|++|++
T Consensus 200 ~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 200 LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhCCEEEEEeCCcC
Confidence 99999999999999975
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=344.04 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=178.2
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++.++.. ....+.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 47788887766310 0012469999999999999999999999999999999999877 5689999999765
Q ss_pred Cc-------------------ccccceEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC
Q 001507 767 RQ-------------------ETFARISGYCEQND--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825 (1065)
Q Consensus 767 ~~-------------------~~~~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 825 (1065)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ....++..+++.++++.+++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467799999986 3554 59999998865322 123344456788899999996
Q ss_pred -ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH
Q 001507 826 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 904 (1065)
Q Consensus 826 -~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 904 (1065)
+..+.. +..||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ .+.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999999777999999999976 466
Q ss_pred HhcCeEEEEecCcEEEEeCCC
Q 001507 905 ESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 905 ~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+.+|++++|. +|+++..|+.
T Consensus 241 ~~adri~vl~-~G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMD-KGKILKTGTP 260 (320)
T ss_pred HhCCEEEEEE-CCEEEEeCCH
Confidence 8899999998 5899999975
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=351.23 Aligned_cols=203 Identities=24% Similarity=0.300 Sum_probs=175.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c----ccceEEEEcCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDI 783 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~~v~q~~~ 783 (1065)
+...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . +++.+|||+|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 44568999999999999999999999999999999999877 5689999999876431 1 2357999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++.+||+||+.|....+. ....+..++++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 223444567889999999987776654 58999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|. +|+++..|++
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~-~G~i~~~g~~ 249 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQ-NGEVVQVGTP 249 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEecCCH
Confidence 999999999999999999999975 4899999999986 5778899999998 5899998875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=331.79 Aligned_cols=201 Identities=27% Similarity=0.415 Sum_probs=169.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 789 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ....+.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 4579999999999999999999999999999999999876 568999999987532 122357999999998888999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
++||+.+....+. .......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|||||+|
T Consensus 91 ~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 162 (236)
T TIGR03864 91 VRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVG 162 (236)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999987654321 223334456788999999987666543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 870 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+.++..+.+.|+++++ +|+|||++||+++ .+ ..+|++++|. +|++++.|+.
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~-~G~i~~~~~~ 216 (236)
T TIGR03864 163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLH-RGRVLADGAA 216 (236)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEe-CCeEEEeCCH
Confidence 999999999999999975 5899999999986 34 4599999998 5789888764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=332.15 Aligned_cols=209 Identities=30% Similarity=0.387 Sum_probs=173.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv 85 (1065)
+++++.+++ ..+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|+
T Consensus 4 ~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 4 ENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred EeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEE
Confidence 345555433 36999999999999999999999999999999999998775 999999998875432 23579999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+++..||+||+.++....+.. . .+.+..++++++.+||.+.
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~ 123 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVP--K--------------------------------DEIDERVREVAELLQIEHL 123 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHH
Confidence 99998888899999998764322100 0 0012236788999999877
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ +.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++|+.+++..+
T Consensus 124 ~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~sH~~~~~~~~ 197 (213)
T cd03301 124 LDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR-LGTTTIYVTHDQVEAMTM 197 (213)
T ss_pred HhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHh
Confidence 66655 469999999999999999999999999999999999999999999998753 256777799999999999
Q ss_pred cccEEEecCCcEEEEc
Q 001507 246 FDDVILLSEGQIVYQG 261 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G 261 (1065)
+|++++|++|++++.|
T Consensus 198 ~d~i~~l~~g~~~~~g 213 (213)
T cd03301 198 ADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCeEEEEECCEEEecC
Confidence 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=336.67 Aligned_cols=223 Identities=26% Similarity=0.354 Sum_probs=177.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC----CceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~----~~~~ 82 (1065)
+++++.++ +..+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.+
T Consensus 4 ~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 4 RGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred eeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCE
Confidence 44555543 246999999999999999999999999999999999998775 9999999988754321 3459
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++.+||+||+.++............ . . . .........++++++.+||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~----~--------~-~-----------~~~~~~~~~~~~~l~~~~l 133 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLA----R--------A-R-----------REEREARERAEELLERVGL 133 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccc----c--------c-c-----------ccHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999886532210000000 0 0 0 0000112347888999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..++.+ +.|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++++ .+++|++++|+.+++
T Consensus 134 ~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~vsH~~~~~ 206 (236)
T cd03219 134 ADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE--RGITVLLVEHDMDVV 206 (236)
T ss_pred cchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEecCHHHH
Confidence 87666554 46999999999999999999999999999999999999999999999865 356777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
..+||++++|++|++++.|+++++
T Consensus 207 ~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 207 MSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999987765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=334.92 Aligned_cols=203 Identities=27% Similarity=0.343 Sum_probs=169.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 456999999999999999999999999999999999987621 128999999987642 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC----ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
+++ +|++||+.+....+. .....+..+.++++++.+++. +..+.. +..||||||||++|||||+.+|+
T Consensus 93 ~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~ 164 (247)
T TIGR00972 93 PFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPE 164 (247)
T ss_pred cCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCC
Confidence 888 999999998654331 112334456678899999997 444433 35899999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|++ |++++.|+.
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999876 489999999986 57788999999984 799988875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=346.22 Aligned_cols=219 Identities=21% Similarity=0.302 Sum_probs=176.8
Q ss_pred HHHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------
Q 001507 6 LRQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF------- 76 (1065)
Q Consensus 6 ~~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~------- 76 (1065)
++++++.++... ..++|+|||++|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|+++...
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHH
Confidence 345555554321 246999999999999999999999999999999999999775 99999999987421
Q ss_pred CCCceEEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 77 VPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 77 ~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
..++.++||+|++. .+...||+||+.|+....+.. . .+....+++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~ 127 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVS-E---------------------------------EDAKQKARE 127 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCC-H---------------------------------HHHHHHHHH
Confidence 12357999999862 233579999999864422110 0 001224788
Q ss_pred HHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 156 IMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 156 ~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
+++.+||. +..++. ++.|||||||||+|||||+.+|+++||||||+|||+.++..+++.|+++++. .++||++
T Consensus 128 ~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tvii 201 (290)
T PRK13634 128 MIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVL 201 (290)
T ss_pred HHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEE
Confidence 99999996 455554 4569999999999999999999999999999999999999999999998654 3567778
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+++..+||+|++|++|++++.|+++++.
T Consensus 202 itHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 202 VTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999987764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=340.46 Aligned_cols=200 Identities=22% Similarity=0.344 Sum_probs=169.6
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCC--C
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 783 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~--~ 783 (1065)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 469999999999999999999999999999999999877 568999999987632 23466799999986 3
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
+++ .||.||+.|+.... .....+..++++++++.+||. +..++. +..||||||||++|||+|+.+|++|+
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999999875332 223344556788999999996 555543 35899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~-~G~i~~~g~~ 230 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK-EGSIVSQTSP 230 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999975 4899999999986 5678899999998 5899999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=341.77 Aligned_cols=201 Identities=25% Similarity=0.313 Sum_probs=170.2
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCC-C
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 784 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~-~ 784 (1065)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 469999999999999999999999999999999999877 568999999987632 234567999999863 2
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+..+||.||+.|...... ...++..++++++++.+++. +..++.. ..||||||||++|||+|+.+|++|||
T Consensus 98 ~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNFG---FSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 335899999988654321 23344456788999999996 5666543 58999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+.||++++|+ +|++++.|+.
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 229 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLE-HGKLIKHASP 229 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999777999999999986 5778899999998 5899998875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=338.65 Aligned_cols=215 Identities=26% Similarity=0.362 Sum_probs=178.4
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~ 767 (1065)
+.++|+++.+. +++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~ 71 (283)
T PRK13636 6 LKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPID 71 (283)
T ss_pred EEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECC
Confidence 56677665541 13569999999999999999999999999999999999877 56899999998763
Q ss_pred -----cccccceEEEEcCCCC-CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCC
Q 001507 768 -----QETFARISGYCEQNDI-HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841 (1065)
Q Consensus 768 -----~~~~~~~~~~v~q~~~-~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 841 (1065)
...+++.+||++|++. .+...|++||+.+..... ..+..+..++++++++.++|.+..++.. +.||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 143 (283)
T PRK13636 72 YSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLS 143 (283)
T ss_pred CCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCC
Confidence 1235567999999874 334579999998864322 1233444567889999999987776653 5899
Q ss_pred HHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001507 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920 (1065)
Q Consensus 842 gGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 920 (1065)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |+++
T Consensus 144 ~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~ 221 (283)
T PRK13636 144 FGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVI 221 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 46678999999985 7999
Q ss_pred EeCCCC
Q 001507 921 YAGPLG 926 (1065)
Q Consensus 921 ~~g~~~ 926 (1065)
+.|+..
T Consensus 222 ~~g~~~ 227 (283)
T PRK13636 222 LQGNPK 227 (283)
T ss_pred EeCCHH
Confidence 999863
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=339.40 Aligned_cols=200 Identities=25% Similarity=0.328 Sum_probs=171.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+|||+|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 459999999999999999999999999999999999877 568999999987643 234567999999973 66778
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||+||+.|..... ....++..++++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred cHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999865432 2234445567899999999987766654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|. +|+++..|++
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~~g~~ 224 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVESTSTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999865 999999999986 34 5799999998 5899998875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=342.48 Aligned_cols=204 Identities=23% Similarity=0.267 Sum_probs=172.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCC--C
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--I 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~--~ 783 (1065)
...+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++... .+++.++||+|++ .
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3579999999999999999999999999999999999877 4689999999876421 2456799999997 5
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
++|.+||.|++.+......+ ....++..+++.++++.+++. +..++. +..|||||||||+|||||+.+|++||
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 78899999999886543211 123445566788999999994 344443 35899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+||||+|||+.++..++++|+++.++ |.|||++|||++ .+.+.+|++++|. +|+++..|+.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~-~G~ive~g~~ 246 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY-LGHAVELGTY 246 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEEcCH
Confidence 99999999999999999999999764 999999999986 4667899999998 5899999975
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=343.82 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=178.5
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.+++.....+|+|+|++|++||+++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .++.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhc
Confidence 355666664332346999999999999999999999999999999999999875 999999998875432 23579
Q ss_pred EEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
+|++|++. +++..||+|||.|+....+.. ..+....++++++.+|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 129 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIP----------------------------------HEEMKERVNEALELVG 129 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCC
Confidence 99999974 677789999998864322110 0011234788999999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|++..+..+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++. .++||++++|+.++
T Consensus 130 L~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tilivtH~~~~ 203 (279)
T PRK13650 130 MQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD-YQMTVISITHDLDE 203 (279)
T ss_pred CHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 987766554 469999999999999999999999999999999999999999999998753 35677779999998
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+ ..||++++|++|+++..|+++++.
T Consensus 204 ~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 204 V-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 8 589999999999999999987764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=329.42 Aligned_cols=202 Identities=29% Similarity=0.335 Sum_probs=166.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 86 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~ 86 (1065)
+++++.+++. +.+|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.....++.++|++
T Consensus 3 ~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~ 77 (205)
T cd03226 3 ENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVM 77 (205)
T ss_pred ccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEe
Confidence 3455554321 46999999999999999999999999999999999998775 999999998765433345799999
Q ss_pred cccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 87 QQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 87 Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
|++. .+..+||+||+.++..... .....++++++.+||.+.
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~ 119 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELD--------------------------------------AGNEQAETVLKDLDLYAL 119 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchh
Confidence 9974 3456799999987532110 001236788999999877
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.+|++++|+.+++.++
T Consensus 120 ~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 120 KERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDYEFLAKV 192 (205)
T ss_pred cCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHh
Confidence 66654 469999999999999999999999999999999999999999999998643 56677799999999999
Q ss_pred cccEEEecCCcEE
Q 001507 246 FDDVILLSEGQIV 258 (1065)
Q Consensus 246 ~D~v~~l~~G~i~ 258 (1065)
||++++|++|+++
T Consensus 193 ~d~i~~l~~G~iv 205 (205)
T cd03226 193 CDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEEECCEEC
Confidence 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=347.05 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=176.5
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCc----cCCc---cc----ccceEEEE
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY----PKRQ---ET----FARISGYC 778 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~----~~~~---~~----~~~~~~~v 778 (1065)
++...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|+++|. ++.. .. .++.++||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 456789999999999999999999999999999999999887 56899999996 2221 11 12579999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCC
Q 001507 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 858 (1065)
Q Consensus 779 ~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p 858 (1065)
+|++.+++.+||+||+.|+...+. ....+..++++++++.++|.+..+... ..||||||||++|||||+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998764432 234455667889999999988777654 479999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 859 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 859 ~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.+|++++|. +|+++..|++.
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~-~G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIME-GGRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCHH
Confidence 999999999999999999999999999765 999999999987 5778999999998 58999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=333.44 Aligned_cols=200 Identities=22% Similarity=0.320 Sum_probs=168.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~~ 787 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 4579999999999999999999999999999999999876 5689999999876431 235679999999999998
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHc-CCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+||.||+.+..... ......+.++++++.+ ++.+..+.. +..||||||||++|||+|+.+|+||+||||
T Consensus 95 ~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 95 MTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred CcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 99999998754221 1122234466777777 465544443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|. +|++++.|++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 221 (237)
T PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLE-NGHVVLEDTG 221 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEe-CCEEEeeCCH
Confidence 9999999999999999999877999999999986 5788899999998 5899999975
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=333.79 Aligned_cols=207 Identities=25% Similarity=0.380 Sum_probs=168.5
Q ss_pred HHhhhhcCCcc-ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-------C
Q 001507 7 RQLRIYRGNRS-KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P 78 (1065)
Q Consensus 7 ~~~~~~~~~~~-~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-------~ 78 (1065)
+++++.+++.. .+.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .
T Consensus 4 ~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 4 KNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred eeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHH
Confidence 34555543211 156999999999999999999999999999999999998775 999999998875432 2
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++.+||+||+.++....+... ...+..++++++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~ 126 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLE 126 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHH
Confidence 3569999999998999999999988654321100 001223778899
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||.+..++.+ +.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+
T Consensus 127 ~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~ 200 (218)
T cd03255 127 RVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE-AGTTIVVVTHD 200 (218)
T ss_pred HcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEECC
Confidence 999987666554 469999999999999999999999999999999999999999999998653 35677778999
Q ss_pred chHHHhhcccEEEecCCcE
Q 001507 239 APEAYELFDDVILLSEGQI 257 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i 257 (1065)
.+++. .||++++|++|++
T Consensus 201 ~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 201 PELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHh-hhcEEEEeeCCcC
Confidence 99886 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=328.58 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=164.1
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c---cc-ceEEEEcCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T---FA-RISGYCEQNDIHS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~---~~-~~~~~v~q~~~~~ 785 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 579999999999999999999999999999999999876 5689999999876421 1 22 5699999999888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+|++||+.+....+. ....+..+++.++++.+++.+..+... ..||||||||++|||+|+.+|++|||||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654321 122333456788999999977666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEE
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 920 (1065)
||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++|.+ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 99999999999999999999754 899999999986 34 55899999984 6764
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=345.86 Aligned_cols=214 Identities=25% Similarity=0.354 Sum_probs=180.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC--CCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~--~~~~~~y 84 (1065)
+++++.++ +..+|+|+||++++||+++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++|
T Consensus 6 ~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 6 SSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEE
Confidence 34444443 356999999999999999999999999999999999998876 999999998875421 2457999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+||+.|.+...+... .+....++++++.+||.+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~ 125 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRP 125 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCch
Confidence 9999999999999999988654332100 001223788999999998
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.+ +.||||||||++||+||+.+|++++|||||+|||+.++.++++.|+++++ +++|++++|+.+++.+
T Consensus 126 ~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 126 EQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK---DKTIILSTHIMQEVEA 197 (301)
T ss_pred HhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEcCCHHHHHH
Confidence 777665 46999999999999999999999999999999999999999999998842 3678889999999999
Q ss_pred hcccEEEecCCcEEEEcCcchHHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+||+|++|++|++++.|+.+++..
T Consensus 198 ~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 198 ICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999988754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=333.82 Aligned_cols=214 Identities=29% Similarity=0.407 Sum_probs=176.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~y 84 (1065)
+++++.+++. .+++|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|
T Consensus 4 ~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 4 RNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEE
Confidence 3455544321 246999999999999999999999999999999999998775 99999999876432 22456999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+||+.+.....+... ......++++++.+||.+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~ 125 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTD 125 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHH
Confidence 9999988889999999987644321100 001123678899999987
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ + ++|++++|+.+++..
T Consensus 126 ~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~ 197 (220)
T cd03263 126 KANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEA 197 (220)
T ss_pred HHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHH
Confidence 776655 46999999999999999999999999999999999999999999998863 3 677889999999999
Q ss_pred hcccEEEecCCcEEEEcCcchH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+||++++|++|++++.|+++++
T Consensus 198 ~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 198 LCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999987653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=352.93 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=175.7
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-------CceEEEEcccccc
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 91 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~-------~~~~~yv~Q~~~~ 91 (1065)
..+|+|+||+|++||+++|+|||||||||||++|+|++.|. +|+|.++|.++..... ++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 35899999999999999999999999999999999999876 9999999998754321 2469999999999
Q ss_pred CCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccccccc
Q 001507 92 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 171 (1065)
Q Consensus 92 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg 171 (1065)
++++||+||+.|+....+... .+...+++++++.+||.+..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc-
Confidence 999999999998754322100 001223778899999987766554
Q ss_pred CcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEE
Q 001507 172 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 251 (1065)
Q Consensus 172 ~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~ 251 (1065)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ .++||++++|+.+++..++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~-~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK-HQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCHHHHHHhCCEEEE
Confidence 569999999999999999999999999999999999999999999998654 356777799999999999999999
Q ss_pred ecCCcEEEEcCcchHH
Q 001507 252 LSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 252 l~~G~i~~~G~~~~~~ 267 (1065)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999987764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=335.36 Aligned_cols=213 Identities=24% Similarity=0.350 Sum_probs=173.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCc-----CCCCceeEEEEECCccCCCCC----
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVSGKITYNGHGFKEFV---- 77 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~-----~~~~~~~G~i~~~g~~~~~~~---- 77 (1065)
+++++.+++ +.+|+|+||++++||+++|+||||||||||+++|+|.+ .|. +|+|.++|.++....
T Consensus 4 ~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 4 RDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred EEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHH
Confidence 345555432 36999999999999999999999999999999999998 554 999999998765422
Q ss_pred -CCceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHH
Q 001507 78 -PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 156 (1065)
Q Consensus 78 -~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 156 (1065)
.++.++|++|++.++ .+||+||+.++....+... . ...+.+++++
T Consensus 78 ~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~--~-------------------------------~~~~~~~~~~ 123 (227)
T cd03260 78 ELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKL--K-------------------------------EELDERVEEA 123 (227)
T ss_pred HHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCc--H-------------------------------HHHHHHHHHH
Confidence 245799999998877 7999999988643221000 0 0012336788
Q ss_pred HHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 001507 157 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 157 l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~ 236 (1065)
++.+||.+..+..+. +.+||||||||++|||||+.+|++++|||||+|||+.++..+++.|+++++ + ++|++++
T Consensus 124 l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~s 197 (227)
T cd03260 124 LRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVT 197 (227)
T ss_pred HHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEe
Confidence 999999876554420 357999999999999999999999999999999999999999999999864 3 6778899
Q ss_pred CCchHHHhhcccEEEecCCcEEEEcCcch
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQGPRVS 265 (1065)
Q Consensus 237 ~~~~~~~~~~D~v~~l~~G~i~~~G~~~~ 265 (1065)
|+.+++..+||++++|++|++++.|++++
T Consensus 198 H~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 198 HNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred ccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999998754
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=333.13 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=168.8
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c-ccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++... . .+..++|++|++.+++
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 34579999999999999999999999999999999999841115689999999875431 2 2334899999999999
Q ss_pred CCCHHHHHHHHhhccCCC----CCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 787 GLTVLESLLFSAWLRLPS----EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.+|++|++.+........ .....+..++++++++.+++. ...+.... ..||||||||++|||+|+.+|++|
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~ll 166 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLA 166 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998764322110 012223345678899999996 34444321 249999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~i~~~g~~ 229 (243)
T TIGR01978 167 ILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGRIVKSGDV 229 (243)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCEEEEecCH
Confidence 999999999999999999999999877899999999986 45566 79999998 5899988875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=335.72 Aligned_cols=206 Identities=23% Similarity=0.259 Sum_probs=171.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c-ccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .+..++|++|++.+++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (255)
T PRK11300 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93 (255)
T ss_pred CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCC
Confidence 34679999999999999999999999999999999999876 5689999999876431 1 2345899999999999
Q ss_pred CCCHHHHHHHHhhccCC----------C--CCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHH
Q 001507 787 GLTVLESLLFSAWLRLP----------S--EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 854 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l 854 (1065)
.+||+||+.++...... . .....+..+.++++++.+++.+..+... ..||||||||++|||||
T Consensus 94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al 168 (255)
T PRK11300 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCM 168 (255)
T ss_pred CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHH
Confidence 99999999986431100 0 0011123346778899999877666543 57999999999999999
Q ss_pred HhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 855 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 855 ~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 238 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN-QGTPLANGTP 238 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEecCCH
Confidence 9999999999999999999999999999999765 899999999986 5778899999998 5899998875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=343.96 Aligned_cols=230 Identities=24% Similarity=0.320 Sum_probs=182.1
Q ss_pred HHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------C
Q 001507 7 RQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V 77 (1065)
Q Consensus 7 ~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-------~ 77 (1065)
+++++.++... ...+|+|||++|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++... .
T Consensus 5 ~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 5 EKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHH
Confidence 45555554221 135999999999999999999999999999999999999876 99999999987421 1
Q ss_pred CCceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 78 PPRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 78 ~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
.++.++||+|++ .++. .||.||+.|+....+... .+.+.++.+
T Consensus 82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~ 126 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAE 126 (288)
T ss_pred HHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHH
Confidence 245799999986 4444 699999998754321100 011234788
Q ss_pred HHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 156 IMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 156 ~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
+++.+||. +..++. ++.||||||||++|||||+.+|+|++|||||+|||+.++..+.+.|+++.+ .+.||++
T Consensus 127 ~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~ 199 (288)
T PRK13643 127 KLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ--SGQTVVL 199 (288)
T ss_pred HHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--CCCEEEE
Confidence 89999996 344443 457999999999999999999999999999999999999999999998864 2567888
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHHH---HHHhCCCCCCCCC
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD---FFASMGFSCPKRK 281 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~---~f~~lG~~~p~~~ 281 (1065)
++|+.+++..+||+|++|++|++++.|+++++.+ .+...|+.+|...
T Consensus 200 vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 200 VTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred EecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999988742 3445566655543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=333.97 Aligned_cols=214 Identities=20% Similarity=0.285 Sum_probs=173.6
Q ss_pred HHHhhhhcCCcc-ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC------
Q 001507 6 LRQLRIYRGNRS-KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------ 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~-~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~------ 78 (1065)
++++++.++... .+.+|+|+||+|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|+++.....
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHH
Confidence 345555554322 256999999999999999999999999999999999998765 9999999988754321
Q ss_pred -CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHH
Q 001507 79 -PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 157 (1065)
Q Consensus 79 -~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 157 (1065)
++.++|++|++.+++.+||+||+.+.....+.. . .+.+.++++++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~l 130 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKK---P-------------------------------AEINSRALEML 130 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCC---H-------------------------------HHHHHHHHHHH
Confidence 246999999998899999999998864321100 0 00122477889
Q ss_pred HHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 158 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 158 ~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
+.+||++..++.+ .+||||||||++||||++.+|+|++|||||+|||+.++..+.+.|+++++. ++++|++++|
T Consensus 131 ~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH 204 (233)
T PRK11629 131 AAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTH 204 (233)
T ss_pred HHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 9999987666544 469999999999999999999999999999999999999999999988643 3567777999
Q ss_pred CchHHHhhcccEEEecCCcEEEEcCc
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQGPR 263 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~G~~ 263 (1065)
+.+++.. +|++++|++|++++.|+.
T Consensus 205 ~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 205 DLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CHHHHHh-hCEEEEEECCEEEEEecc
Confidence 9998876 479999999999998864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=332.07 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=171.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 34579999999999999999999999999999999999876 5689999999876421 12346999999999999
Q ss_pred CCCHHHHHHHHhhccCC-----CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 787 GLTVLESLLFSAWLRLP-----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.+||+||+.+....... .....+...++++++++.+++.+..+..+ +.||||||||++|||||+.+|++|
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999885431100 00112234456889999999987666543 579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+++..|+.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~g~~~~~~~~ 226 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLH-QGSVLAEGSL 226 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEE-CCeEEeeCCH
Confidence 99999999999999999999999865 799999999986 5777899999998 4789988874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=336.86 Aligned_cols=223 Identities=26% Similarity=0.367 Sum_probs=177.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.+++ ...+|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++
T Consensus 4 ~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 4 ENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred eeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHh
Confidence 345555433 146999999999999999999999999999999999998765 999999998775432 235
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.++..... ..... ..+. ........++++++.+
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~---------~~~~---------------~~~~~~~~~~~~l~~~ 132 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRR--STWRS---------LFGL---------------FPKEEKQRALAALERV 132 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccc--hhhhh---------hccc---------------CcHHHHHHHHHHHHHc
Confidence 69999999988898999999987532110 00000 0000 0001123477889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ ..|||||||||+|||||+.+|+|++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+
T Consensus 133 ~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~~~ 206 (241)
T cd03256 133 GLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE-EGITVIVSLHQVD 206 (241)
T ss_pred CChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 9987665544 569999999999999999999999999999999999999999999998753 3567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
++..+||++++|++|++++.|+++++
T Consensus 207 ~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 207 LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 99999999999999999999988765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=332.65 Aligned_cols=202 Identities=26% Similarity=0.355 Sum_probs=170.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC---------cccccceEEEEcCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---------QETFARISGYCEQND 782 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~---------~~~~~~~~~~v~q~~ 782 (1065)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ....++.++|++|++
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 4579999999999999999999999999999999999876 56899999998652 112356799999999
Q ss_pred CCCCCCCHHHHHHHH-hhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 783 IHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.+++.+|+.||+.+. .... .....+..+.+.++++.+|+.+..+... ..||||||||++|||||+.+|++|
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~ll 163 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVL 163 (242)
T ss_pred cccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999753 2221 1122333456788999999987666543 579999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 164 ilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 225 (242)
T PRK11124 164 LFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYME-NGHIVEQGDA 225 (242)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999777999999999986 5667899999998 5899998875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=334.10 Aligned_cols=203 Identities=25% Similarity=0.316 Sum_probs=172.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----------------ccccceE
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARIS 775 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~~ 775 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 4579999999999999999999999999999999999876 568999999987532 1245679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHH
Q 001507 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 855 (1065)
Q Consensus 776 ~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~ 855 (1065)
+|++|++.+++..|+.||+.+..... .........+.++++++.+++.+..+... ..||||||||++|||+|+
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~ 162 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALA 162 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHH
Confidence 99999999999999999998753211 11223344456788999999977666543 579999999999999999
Q ss_pred hCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 856 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 856 ~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 231 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFD-KGRIVEQGKP 231 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999999999998765 899999999986 5667899999998 5899988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=326.38 Aligned_cols=194 Identities=27% Similarity=0.371 Sum_probs=164.0
Q ss_pred eeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCHHHHHHH
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 796 (1065)
Q Consensus 718 ~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 796 (1065)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 568999999987643 1234679999999999999999999987
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHH
Q 001507 797 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876 (1065)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~ 876 (1065)
....+.. . .....++++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5422111 1 1233456789999999987766543 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 877 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 877 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
.+++.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLD-NGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEE-CCEEeecC
Confidence 999999999754 899999999986 5667899999998 57887653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=377.97 Aligned_cols=220 Identities=28% Similarity=0.398 Sum_probs=178.4
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++...+ .+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||.++.+.. .++.+
T Consensus 474 ~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 474 FENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred EEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhhe
Confidence 5677777766543 7999999999999999999999999999999999999886 999999999987664 46899
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+||+|++.+|. .||+|||.++... ...+.+.++|.... +.+ ....+
T Consensus 550 g~V~Q~~~Lf~-gSI~eNi~l~~p~----~~~e~i~~A~~~ag---------------------------~~~--fI~~l 595 (709)
T COG2274 550 GYVLQDPFLFS-GSIRENIALGNPE----ATDEEIIEAAQLAG---------------------------AHE--FIENL 595 (709)
T ss_pred eEEcccchhhc-CcHHHHHhcCCCC----CCHHHHHHHHHHhC---------------------------cHH--HHHhc
Confidence 99999999776 5999999885321 11122222221110 111 12358
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
+..+||.||+.+. +||||||||++||||++++|+||+||||||+||+.+...+.+.|.++.+ + .|+|+++|..+ .
T Consensus 596 P~gy~t~v~E~G~-~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~-~T~I~IaHRl~-t 670 (709)
T COG2274 596 PMGYDTPVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--G-RTVIIIAHRLS-T 670 (709)
T ss_pred ccccccccccCCC-CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--C-CeEEEEEccch-H
Confidence 8899999998654 8999999999999999999999999999999999999999999998753 3 44555666654 5
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
.+.||+|+||++|+++++|+++++++
T Consensus 671 i~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 671 IRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hhhccEEEEccCCceeccCCHHHHHH
Confidence 57899999999999999999999976
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=336.46 Aligned_cols=200 Identities=24% Similarity=0.326 Sum_probs=170.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCC-CCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 787 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~-~~~~ 787 (1065)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 469999999999999999999999999999999999876 568999999987642 234567999999975 3567
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
.|+.||+.|..... ........+.++++++.+++.+..+..+ ..||||||||++|||||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865332 1233444566888999999987766644 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+++.|++++++|.|||++||+++ ++ ..+|++++|. +|++++.|+.
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~-~G~i~~~g~~ 219 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMD-RGKIVLEGEP 219 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999877999999999986 45 5699999998 4799999875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=332.32 Aligned_cols=218 Identities=26% Similarity=0.316 Sum_probs=174.2
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+.++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 46666665543 345799999999999999999999999999999999998652 13689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
.++.. ..+++.+||++|++.+++ +|++||+.|....+. .......+.++++++.+++.+....... ....
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 153 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLK-SPAL 153 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhc-CChh
Confidence 87532 134567999999988887 899999998754321 2233344567889999888432111111 1235
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|. +|+
T Consensus 154 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 230 (258)
T PRK14268 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL-MGE 230 (258)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999864 899999999986 5667899999998 589
Q ss_pred EEEeCCC
Q 001507 919 LIYAGPL 925 (1065)
Q Consensus 919 ~~~~g~~ 925 (1065)
+++.|++
T Consensus 231 i~~~~~~ 237 (258)
T PRK14268 231 LIEFGQT 237 (258)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=334.72 Aligned_cols=203 Identities=27% Similarity=0.394 Sum_probs=171.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 787 (1065)
+++.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCC
Confidence 34579999999999999999999999999999999999876 568999999987532 2344679999999888888
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHH------hCCCce
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIV 861 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~------~~p~il 861 (1065)
+||+||+.+...... ...+...+.++++++.+++.+..+..+ ..|||||||||+|||||+ .+|++|
T Consensus 91 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 91 FTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred CCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 999999987543211 112233456788999999987666644 579999999999999999 599999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ .+...+|++++|. +|++++.|+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 225 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH-QGRLVADGTP 225 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE-CCEEEeeCCH
Confidence 9999999999999999999999997 56899999999986 5677899999998 5799988875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=332.75 Aligned_cols=212 Identities=21% Similarity=0.347 Sum_probs=175.5
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceEE
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSA 83 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~~ 83 (1065)
++++.++ .+.+|+|+||++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++
T Consensus 5 ~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 5 NLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred EEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEE
Confidence 4444443 246999999999999999999999999999999999998775 999999998765432 124699
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
|++|++.+++.+||+||+.+.....+... ......++++++.+||.
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~ 124 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHIT 124 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCh
Confidence 99999998999999999987543211000 00112367889999998
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+..++.+ +.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ .+++|++++|+.+++.
T Consensus 125 ~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--~~~tii~~sH~~~~~~ 197 (232)
T cd03218 125 HLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD--RGIGVLITDHNVRETL 197 (232)
T ss_pred hhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHH
Confidence 7666554 46999999999999999999999999999999999999999999998865 2567777999999999
Q ss_pred hhcccEEEecCCcEEEEcCcchH
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+++|++++|++|++++.|+.+++
T Consensus 198 ~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 198 SITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999999999999987665
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=336.34 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=176.0
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEEE
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAY 84 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~y 84 (1065)
++++.+++. ..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|
T Consensus 5 ~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 5 NVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEE
Confidence 444444321 46999999999999999999999999999999999998775 999999998765422 2457899
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+||+||+.++....+... ......++++++.+||.+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~ 125 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDP 125 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCc
Confidence 9999998999999999987643221000 001223678899999985
Q ss_pred --cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 165 --CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 165 --~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
..++. +++|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++
T Consensus 126 ~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~ 199 (242)
T cd03295 126 AEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEA 199 (242)
T ss_pred HHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHH
Confidence 44443 4579999999999999999999999999999999999999999999998653 356777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
..++|+|++|++|++++.|+++++.
T Consensus 200 ~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 200 FRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999876653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=328.39 Aligned_cols=227 Identities=21% Similarity=0.302 Sum_probs=187.5
Q ss_pred HHHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC-C-CCceeEEEEECCccCCCCC-----
Q 001507 6 LRQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-H-HLQVSGKITYNGHGFKEFV----- 77 (1065)
Q Consensus 6 ~~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~-~-~~~~~G~i~~~g~~~~~~~----- 77 (1065)
++++++++... ....+++||||++++||+++|+|.|||||||+.++|+|+++ + ....+|+|.|+|.++-...
T Consensus 4 v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~ 83 (316)
T COG0444 4 VKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELR 83 (316)
T ss_pred EeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHH
Confidence 45677776553 35789999999999999999999999999999999999997 3 3357899999999764432
Q ss_pred --CCceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHH
Q 001507 78 --PPRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 153 (1065)
Q Consensus 78 --~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 153 (1065)
..+.|+|++|++ .+-|..||.+.+.-..+.+.... ...+..+++
T Consensus 84 ~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a 131 (316)
T COG0444 84 KIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERA 131 (316)
T ss_pred hhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHH
Confidence 235799999997 57888999998876544321100 011223458
Q ss_pred HHHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEE
Q 001507 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233 (1065)
Q Consensus 154 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii 233 (1065)
.++|+.+||++... +-+.+..+|||||||||.||.||+.+|++||.||||++||..++.+|++.|+++.++ .+++++
T Consensus 132 ~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aii 208 (316)
T COG0444 132 IELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALI 208 (316)
T ss_pred HHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEE
Confidence 88999999987422 335678899999999999999999999999999999999999999999999999874 578888
Q ss_pred EecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 234 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 234 ~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.||||...+.++||||+||..|++++.|+.+++.
T Consensus 209 lITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 209 LITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 8999999999999999999999999999998874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=346.26 Aligned_cols=208 Identities=20% Similarity=0.231 Sum_probs=174.3
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCceEEEEcccc--c
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 90 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~~~yv~Q~~--~ 90 (1065)
..+++||||+|++||+++|+|+||||||||+++|+|++.+. +|+|.++|.++.+.. .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 57999999999999999999999999999999999999775 999999999875432 245799999997 5
Q ss_pred cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc-cccccc
Q 001507 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 169 (1065)
Q Consensus 91 ~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~ 169 (1065)
+++.+||.||+.+......... . ..+....++++++.+||. +..++
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~--~------------------------------~~~~~~~~~~~l~~vgl~~~~~~~- 157 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKL--S------------------------------RQEVKDRVKAMMLKVGLLPNLINR- 157 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCC--C------------------------------HHHHHHHHHHHHHHcCCChHHhcC-
Confidence 7889999999988643221000 0 001123477889999994 34444
Q ss_pred ccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccE
Q 001507 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 170 vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v 249 (1065)
.+..|||||||||+|||||+.+|++|++||||+|||..++.++++.|+++.++ .+.++++++|+...+..++|+|
T Consensus 158 ----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 158 ----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 45679999999999999999999999999999999999999999999998754 3567888999999999999999
Q ss_pred EEecCCcEEEEcCcchHH
Q 001507 250 ILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 250 ~~l~~G~i~~~G~~~~~~ 267 (1065)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999988774
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=332.62 Aligned_cols=209 Identities=24% Similarity=0.287 Sum_probs=170.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc---ccccceEEEEcCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~ 785 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 457999999999999999999999999999999999986531 368999999987642 23456799999999888
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+||.||+.+....+.. .....+..+.++++++.+++.+...... ...+..||||||||++|||||+.+|++|+|||
T Consensus 95 ~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14247 95 PNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRLCIARALAFQPEVLLADE 172 (250)
T ss_pred CCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 899999999886533211 1122334456788999999854211111 11235899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|+ +|+++..|+.
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14247 173 PTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLY-KGQIVEWGPT 229 (250)
T ss_pred CCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEE-CCeEEEECCH
Confidence 9999999999999999999864 899999999986 5667899999998 5899988875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=336.38 Aligned_cols=200 Identities=28% Similarity=0.340 Sum_probs=171.3
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|+++.. ...++.+||++|++. +++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 469999999999999999999999999999999999877 568999999987643 234567999999973 66778
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||.||+.+..... ....++..++++++++.++|.+..+..+ ..||||||||++|||+|+.+|+||||||||+
T Consensus 98 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred cHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998865432 1233444567889999999987776654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+++.|++++++ |+|||++||+++ .+ ..+|++++|. +|++++.|+.
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~-~G~i~~~g~~ 224 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMN-KGEILEEGTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999865 899999999986 34 4699999998 5899999875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=348.80 Aligned_cols=207 Identities=22% Similarity=0.275 Sum_probs=175.5
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCc----cCCCCC-------CCceEEEEc
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFV-------PPRTSAYVS 86 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~----~~~~~~-------~~~~~~yv~ 86 (1065)
...+|+|+||+|++||+++|+|+||||||||+++|+|++.|. +|+|.++|. ++.... .++.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 467899999999999999999999999999999999999875 999999996 332221 124699999
Q ss_pred cccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccc
Q 001507 87 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 166 (1065)
Q Consensus 87 Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 166 (1065)
|++.+++.+||+||+.|+....+... .+.+..++++++.+||.+..
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~~ 158 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQWA 158 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhh
Confidence 99999999999999998754322100 00123478889999998877
Q ss_pred cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhc
Q 001507 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 246 (1065)
Q Consensus 167 ~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~ 246 (1065)
|..+ ..|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|.++.++. ++||++++|+.+++.+++
T Consensus 159 ~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l~ 232 (382)
T TIGR03415 159 DKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKIG 232 (382)
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence 6654 4699999999999999999999999999999999999999999999987543 567777999999999999
Q ss_pred ccEEEecCCcEEEEcCcchHH
Q 001507 247 DDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 247 D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
|+|++|++|+++..|+++++.
T Consensus 233 DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 233 NRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999988774
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=332.34 Aligned_cols=211 Identities=27% Similarity=0.393 Sum_probs=172.8
Q ss_pred HHhhhhcCCcc-ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEE
Q 001507 7 RQLRIYRGNRS-KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~-~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~ 83 (1065)
+++++.+++.. ..++|+|+|+++++|++++|+|+||||||||+++|+|.++|. +|+|.++|.++... ..++.++
T Consensus 5 ~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 5 DALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred EEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEE
Confidence 44555554321 126999999999999999999999999999999999998775 99999999877532 2245799
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
|++|++.+++.+||+||+.+.....+.. . .+....++++++.+||.
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~ 127 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLK--G--------------------------------DELTARLEELADRLGME 127 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCH
Confidence 9999998889899999998754322100 0 00122477899999998
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+..+..+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ .+.+|++++|+.+++.
T Consensus 128 ~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~ 200 (218)
T cd03266 128 ELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA--LGKCILFSTHIMQEVE 200 (218)
T ss_pred HHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHH
Confidence 7766554 46999999999999999999999999999999999999999999999864 2567777999999999
Q ss_pred hhcccEEEecCCcEEEEc
Q 001507 244 ELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G 261 (1065)
.++|++++|++|++++.|
T Consensus 201 ~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 201 RLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCEEEEEECCEEeecC
Confidence 999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=348.15 Aligned_cols=218 Identities=25% Similarity=0.387 Sum_probs=178.3
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
+.+++++++. ++++|+++||+|++||-+||+|+|||||||++|+|.+.+. + +|+|.+||.++.+.. .++.|
T Consensus 354 F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 354 FDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred EEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhhe
Confidence 3566676653 3569999999999999999999999999999999999886 3 999999999886653 46789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|||||+..+|.+ ||.+||.++.. ...++.+.+.|+... ..++ ...|
T Consensus 428 g~VPQd~~LFnd-TIl~NI~YGn~----sas~eeV~e~~k~a~---------------------------~hd~--i~~l 473 (591)
T KOG0057|consen 428 GVVPQDSVLFND-TILYNIKYGNP----SASDEEVVEACKRAG---------------------------LHDV--ISRL 473 (591)
T ss_pred eEeCCcccccch-hHHHHhhcCCC----CcCHHHHHHHHHHcC---------------------------cHHH--HHhc
Confidence 999999997765 99999998632 223344444443311 1111 2347
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++.++|.||+++. .|||||||||+||||++.+|+|+++|||||+||+++..++++.+.+. .+++|+|.+.|+.+.+
T Consensus 474 ~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~---~~~rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 474 PDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV---MSGRTVIMIVHRLDLL 549 (591)
T ss_pred cccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh---cCCCeEEEEEecchhH
Confidence 8889999999876 59999999999999999999999999999999999999999999884 2456666688887755
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
.-||+|++|++|++.+.|++++++.
T Consensus 550 -~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 550 -KDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred -hcCCEEEEEECCeeEEeccHHHHhh
Confidence 5689999999999999999999975
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=355.18 Aligned_cols=219 Identities=27% Similarity=0.420 Sum_probs=181.5
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++ ++.+|+|+||++++||+++|+||||||||||||+|+|.++|. +|+|.++|.++.... .++.+
T Consensus 6 ~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 6 VSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred EeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcce
Confidence 456666554 357999999999999999999999999999999999999875 999999998876532 34679
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+||+|++.+++.+||+||+.++..... ..+.. . ......+++++++.+||
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~--~~~~~-------------~---------------~~~~~~~v~~~le~vgl 129 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHR--SRFDT-------------W---------------TETDRAAVERAMERTGV 129 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhc--ccccC-------------C---------------CHHHHHHHHHHHHHcCC
Confidence 999999988889999999988532110 00000 0 00112347889999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ +.|||||||||+|||||+++|++|+|||||+|||+.++..+++.|+++++ . +++|++++|+.+++
T Consensus 130 ~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~ 202 (402)
T PRK09536 130 AQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLA 202 (402)
T ss_pred chhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHH
Confidence 88777654 46999999999999999999999999999999999999999999999975 2 56777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.++||++++|++|++++.|+++++.
T Consensus 203 ~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 203 ARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999988764
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=336.43 Aligned_cols=205 Identities=29% Similarity=0.413 Sum_probs=170.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~l 788 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 4579999999999999999999999999999999999876 568999999987532 23456799999998888889
Q ss_pred CHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 789 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
|+.||+.+....... .........++++++++.+++.+..+..+ ..||||||||++|||||+.+|+||||||||
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt 175 (265)
T PRK10575 101 TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPT 175 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999875321100 00111223456788999999977666544 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|+++..|+.
T Consensus 176 ~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~-~G~i~~~~~~ 232 (265)
T PRK10575 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALR-GGEMIAQGTP 232 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEecCH
Confidence 999999999999999999765 899999999986 5778899999998 5899988875
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=327.03 Aligned_cols=198 Identities=25% Similarity=0.377 Sum_probs=167.8
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCCHH
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 98 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~ 98 (1065)
+.+++|+||++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999998775 9999999987643 2345799999999888889999
Q ss_pred HHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccC
Q 001507 99 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 178 (1065)
Q Consensus 99 e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 178 (1065)
||+.+.....+... ......++++++.+||++..++.+ .+|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99987543321100 001223778899999987666544 469
Q ss_pred chhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEE
Q 001507 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 258 (1065)
Q Consensus 179 SGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~ 258 (1065)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+. +.+|++++|+.+++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA--GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999988643 567788999999999999999999999998
Q ss_pred EEc
Q 001507 259 YQG 261 (1065)
Q Consensus 259 ~~G 261 (1065)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=332.80 Aligned_cols=209 Identities=25% Similarity=0.262 Sum_probs=169.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCC-----cccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++. ...+++.++|++|++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 457999999999999999999999999999999999987632 35899999998764 1234567999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++.+|+.||+.+....+.. ....+...+.++++++.+++........ ...+..||||||||++|||||+.+|++|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999886543211 0122333456788899988753211111 112357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|. +|++++.|+.
T Consensus 174 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 232 (253)
T PRK14267 174 DEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY-LGKLIEVGPT 232 (253)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999865 699999999986 5677899999998 5899998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=336.55 Aligned_cols=223 Identities=24% Similarity=0.327 Sum_probs=176.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.++. +..+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++
T Consensus 5 ~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 5 ENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred EeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHh
Confidence 455555531 246999999999999999999999999999999999998775 999999998765421 245
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.++..... ..+... .+. .......+++++++.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~---------~~~---------------~~~~~~~~~~~~l~~~ 133 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYK--PTWRSL---------LGR---------------FSEEDKERALSALERV 133 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccc--cchhhh---------hcc---------------ccHHHHHHHHHHHHHc
Confidence 69999999988999999999987432100 000000 000 0001123477889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..+..+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+
T Consensus 134 ~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~ 207 (243)
T TIGR02315 134 GLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVD 207 (243)
T ss_pred CcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 9987666544 469999999999999999999999999999999999999999999998653 3567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
++.++||++++|++|++++.|+++++
T Consensus 208 ~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 208 LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999987664
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=321.62 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=183.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~ 785 (1065)
..-++|+|++|+.||++.|||-||||||||+++|.++.. ++.|+|+++|.++.. ..+++.+++|+|...++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 346789999999999999999999999999999999987 679999999987632 12456799999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
|+.||.||+.|+..++ ..+.+++++++.++++..||.+..+..+ .+||||+||||.|||||+.+|+||++||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 3567888899999999999999998765 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|+|.|||--+..+++.|.+|.++ ++|||++|||++ |.+++-|||.+|+ +|+++..|++.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999999755 899999999998 7889999999997 68999999874
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=334.43 Aligned_cols=201 Identities=25% Similarity=0.352 Sum_probs=171.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+|||+|++. .+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 459999999999999999999999999999999999877 568999999987643 234567899999974 33467
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||.||+.+..... ....+...++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|||||||+
T Consensus 95 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 95 TVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998765322 2233444556789999999987766654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~-~G~i~~~g~~ 222 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD-KGRIVAYGTV 222 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEEECCH
Confidence 99999999999999999765 899999999986 5778899999998 4799999875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=334.35 Aligned_cols=207 Identities=26% Similarity=0.387 Sum_probs=172.2
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 787 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 (255)
T ss_pred CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCC
Confidence 34679999999999999999999999999999999999876 568999999986532 2345679999999888888
Q ss_pred CCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+|+.||+.++...... .........+.++++++.+++.+..+... ..||||||||++|||||+.+|++|+||||
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999875211000 01111233456788999999977666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|+ +|+++..|+..
T Consensus 166 ~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~ 223 (255)
T PRK11231 166 TTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLA-NGHVMAQGTPE 223 (255)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEE-CCeEEEEcCHH
Confidence 9999999999999999998777999999999986 5778899999998 47899888753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=344.93 Aligned_cols=218 Identities=23% Similarity=0.343 Sum_probs=175.6
Q ss_pred HHHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCC--------
Q 001507 6 LRQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-------- 75 (1065)
Q Consensus 6 ~~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~-------- 75 (1065)
++++++.++... ...+|+|+||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.+...
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceeccccccccccc
Confidence 345666554321 236999999999999999999999999999999999999876 8999999865421
Q ss_pred -------------------CCCCceEEEEcccc-ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchh
Q 001507 76 -------------------FVPPRTSAYVSQQD-WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 135 (1065)
Q Consensus 76 -------------------~~~~~~~~yv~Q~~-~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1065)
...++.++||+|++ ..+...||+|||.|+....+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~------------------------ 137 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS------------------------ 137 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC------------------------
Confidence 01245699999985 3445679999999865432110
Q ss_pred HHHHhhhhccCCcchhHHHHHHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHH
Q 001507 136 DIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTY 214 (1065)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~ 214 (1065)
..+...+++++++.+||. +..++. +..|||||||||+||+||+.+|++|+|||||+|||+.++.
T Consensus 138 ----------~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 138 ----------KEEAKKRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred ----------HHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 001123478889999996 555544 4569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 215 QIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 215 ~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.|+++.+ .+.+|++++|+.+++.++||+|++|++|++++.|+++++.
T Consensus 203 ~l~~~l~~l~~--~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 203 EILEIFDNLNK--QGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHHHHHHHH--CCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999864 3567788999999999999999999999999999988764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=345.79 Aligned_cols=217 Identities=22% Similarity=0.375 Sum_probs=175.4
Q ss_pred HHHhhhhcCCc--cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------
Q 001507 6 LRQLRIYRGNR--SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF------- 76 (1065)
Q Consensus 6 ~~~~~~~~~~~--~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~------- 76 (1065)
++++++.++.. ....+|+|||++|++||+++|+|+||||||||+++|+|++.|. +|+|.++|.++.+.
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEccccccccccc
Confidence 35566655432 1246999999999999999999999999999999999999875 99999999876432
Q ss_pred ------------CCCceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhh
Q 001507 77 ------------VPPRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSF 142 (1065)
Q Consensus 77 ------------~~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (1065)
..++.++||+|++ .+++ .||+||+.|+....+.. .
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~-~----------------------------- 149 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK-K----------------------------- 149 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCC-H-----------------------------
Confidence 1246799999986 4555 59999998864321100 0
Q ss_pred hccCCcchhHHHHHHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHH
Q 001507 143 ALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 221 (1065)
Q Consensus 143 ~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~ 221 (1065)
.+...+++++++.+||+ +..++ .+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+
T Consensus 150 ----~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~ 220 (320)
T PRK13631 150 ----SEAKKLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLIL 220 (320)
T ss_pred ----HHHHHHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence 00122477889999996 44443 345799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 222 HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 222 ~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++.. .++||++++|+.+++...||+|++|++|++++.|+++++.
T Consensus 221 ~l~~--~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 221 DAKA--NNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred HHHH--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 8864 3567778999999999999999999999999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=327.76 Aligned_cols=198 Identities=26% Similarity=0.355 Sum_probs=166.3
Q ss_pred eeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q 001507 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 795 (1065)
Q Consensus 716 l~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~ 795 (1065)
|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 469999999999999999999999999999999876 56899999998764322 12489999999999999999998
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHH
Q 001507 796 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875 (1065)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~ 875 (1065)
+......+ .....+..+.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 1223344556788999999987666543 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 876 AIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 876 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLT-NGPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe-CCcEecccCc
Confidence 9999999998764 899999999986 5778899999998 4788887754
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=330.41 Aligned_cols=214 Identities=23% Similarity=0.284 Sum_probs=172.9
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCc
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGY 764 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~ 764 (1065)
+.++++++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 8 l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 8 IETENLNLFY-------------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74 (254)
T ss_pred EEEeeeEEEe-------------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE
Confidence 5666666544 2356999999999999999999999999999999999987632 25899999998
Q ss_pred cCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccCC
Q 001507 765 PKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLP 835 (1065)
Q Consensus 765 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 835 (1065)
++.. ..+++.++|++|++.+++ +||+||+.|....+.. .......+.++++++.+++.+ ..++
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~----- 146 (254)
T PRK14273 75 NIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNT----- 146 (254)
T ss_pred ecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhC-----
Confidence 7531 234567999999988774 8999999886533211 122333456788888888742 2333
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 836 ~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
.+..||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|.
T Consensus 147 ~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~- 223 (254)
T PRK14273 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL- 223 (254)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 236899999999999999999999999999999999999999999999996 4799999999986 5678899999998
Q ss_pred CcEEEEeCCC
Q 001507 916 GGELIYAGPL 925 (1065)
Q Consensus 916 gg~~~~~g~~ 925 (1065)
+|+++..|+.
T Consensus 224 ~G~i~~~g~~ 233 (254)
T PRK14273 224 NGCIEEESST 233 (254)
T ss_pred CCEEEEeCCH
Confidence 5899998875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=328.63 Aligned_cols=201 Identities=27% Similarity=0.338 Sum_probs=167.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (230)
T TIGR03410 11 GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFP 88 (230)
T ss_pred CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccC
Confidence 34579999999999999999999999999999999999876 5689999999875421 12457999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcC-CCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
.+|++||+.+....+.. . ..+..+++++.++ +.+..+.. +..||||||||++|||+|+.+|++|+|||
T Consensus 89 ~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 89 RLTVEENLLTGLAALPR---R---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred CCcHHHHHHHHHHhcCc---c---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999886543211 1 1223466777776 44444443 35799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|+..
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~-~g~i~~~~~~~ 217 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME-RGRVVASGAGD 217 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 99999999999999999998764 899999999986 5667899999998 58999998764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.91 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=169.6
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEc-CCCCCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCE-QNDIHSP 786 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~-q~~~~~~ 786 (1065)
++.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 456789999999999999999999999999999999999876 568999999986432 23456799997 5567778
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++|++.+....+. ....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999988654332 223334456788899999987776654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVID-KGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEecC
Confidence 9999999999999999999764 899999999986 5678899999998 47887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=325.03 Aligned_cols=203 Identities=26% Similarity=0.417 Sum_probs=170.1
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-CCCceEEEEc
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVS 86 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~ 86 (1065)
++++.++ +..+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++... ..++.++|++
T Consensus 5 ~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 5 DLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred EEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEec
Confidence 4444443 246999999999999999999999999999999999998765 99999999876432 2245699999
Q ss_pred cccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccc
Q 001507 87 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 166 (1065)
Q Consensus 87 Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 166 (1065)
|++.+++.+||+||+.+....... .+..++++++.+||.+..
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~ 120 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSA 120 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHH
Confidence 999889999999999875432110 012367788999998776
Q ss_pred cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhc
Q 001507 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 246 (1065)
Q Consensus 167 ~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~ 246 (1065)
++.+ ..|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++.+ .+.++++++|+.+++..++
T Consensus 121 ~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~tH~~~~~~~~~ 193 (208)
T cd03268 121 KKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD--QGITVLISSHLLSEIQKVA 193 (208)
T ss_pred hhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhc
Confidence 6554 46999999999999999999999999999999999999999999998865 3566777899999999999
Q ss_pred ccEEEecCCcEEEEc
Q 001507 247 DDVILLSEGQIVYQG 261 (1065)
Q Consensus 247 D~v~~l~~G~i~~~G 261 (1065)
|++++|++|++++.|
T Consensus 194 d~v~~l~~g~i~~~g 208 (208)
T cd03268 194 DRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEEEECCEEEecC
Confidence 999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=333.40 Aligned_cols=206 Identities=24% Similarity=0.347 Sum_probs=171.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~l 788 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 4579999999999999999999999999999999999876 568999999987532 23345799999999888889
Q ss_pred CHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 789 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
|++||+.+......+ .....+...+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||
T Consensus 97 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt 171 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPT 171 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 999999875211100 00011233456788999999987666543 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+|++++|. +|++++.|+..
T Consensus 172 ~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 229 (265)
T PRK10253 172 TWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIVAQGAPK 229 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999999764 899999999986 5788899999998 58999998753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=336.15 Aligned_cols=202 Identities=25% Similarity=0.331 Sum_probs=169.5
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCCC-C
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH-S 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~~-~ 785 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.. +
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 4569999999999999999999999999999999999877 568999999987631 1345679999999753 3
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
...|+.||+.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|||||
T Consensus 91 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 91 FYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4568999998764332 1223334456788999999987766543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|. +|++++.|+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 220 (271)
T PRK13638 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLR-QGQILTHGAP 220 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999777999999999986 5667899999998 5899998875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=364.93 Aligned_cols=123 Identities=25% Similarity=0.360 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHHhCC---Ccee
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANP---SIVF 862 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p---~il~ 862 (1065)
.+|+.|++.|...+.. .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3788999888654321 1123578888998753 3433 2579999999999999999999 9999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~ 925 (1065)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999878999999999975 346799999994 47999999975
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=334.34 Aligned_cols=209 Identities=28% Similarity=0.386 Sum_probs=172.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCccCCc--------ccccceEEEEcCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ--------ETFARISGYCEQN 781 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~~~G~i~i~g~~~~~--------~~~~~~~~~v~q~ 781 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.++.. ...++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 3467999999999999999999999999999999999987632 236999999987532 1234568999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHh
Q 001507 782 DIHSPGLTVLESLLFSAWLRLPS-----EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 856 (1065)
Q Consensus 782 ~~~~~~ltv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~ 856 (1065)
+.+++.+|++||+.+......+. .........+++++++.+++.+..+... ..||||||||++|||||+.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQ 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhc
Confidence 99999999999998753211000 0111233456789999999987666543 5799999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 857 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 857 ~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+|+||+|||||+|||+.++..+.+.|+++++ +|.|||++||+++ .+...+|++++|. +|++++.|+..
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~g~i~~~g~~~ 238 (262)
T PRK09984 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALR-QGHVFYDGSSQ 238 (262)
T ss_pred CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCHH
Confidence 9999999999999999999999999999975 4899999999986 4678899999998 57899988764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=328.33 Aligned_cols=211 Identities=27% Similarity=0.405 Sum_probs=172.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC----CceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~----~~~~ 82 (1065)
+++++.++ ..++|+|+||++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+
T Consensus 4 ~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 4 ENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred eeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCe
Confidence 34444443 246999999999999999999999999999999999999775 9999999987654321 3469
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh-C
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-G 161 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-g 161 (1065)
+|++|++.+++.+|++||+.++..... . . .....++++++.+ +
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~--~--~--------------------------------~~~~~~~~~l~~~~~ 121 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARR--R--A--------------------------------KRKARLERVYELFPR 121 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcC--c--h--------------------------------hHHHHHHHHHHHHHh
Confidence 999999998999999999988643211 0 0 0011245566776 4
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+++..++.+ +.||||||||++|||||+.+|++++|||||+|||+.++..+++.|++++. .+++|++++|+.++
T Consensus 122 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~ 194 (222)
T cd03224 122 LKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARF 194 (222)
T ss_pred hhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHH
Confidence 666555544 46999999999999999999999999999999999999999999999865 35677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+.++||++++|++|++++.|+.+++
T Consensus 195 ~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 195 ALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999987665
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=337.01 Aligned_cols=216 Identities=20% Similarity=0.292 Sum_probs=176.5
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC---------
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--------- 76 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--------- 76 (1065)
++++++.+++ ..+|+|+||++++|++++|+||||||||||+++|+|.+.++ +|+|.++|.++...
T Consensus 6 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 6 VKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred EeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhH
Confidence 4556655542 46999999999999999999999999999999999998775 99999999876431
Q ss_pred --CCCceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHH
Q 001507 77 --VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154 (1065)
Q Consensus 77 --~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (1065)
..++.++|++|++.+++..||+||+.++..... ... . ......++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-~-------------------------------~~~~~~~~ 126 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-GEP-K-------------------------------EEATARAR 126 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc-CCC-H-------------------------------HHHHHHHH
Confidence 123569999999988888999999987532110 000 0 00122367
Q ss_pred HHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 155 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 155 ~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
++++.+||.+..|+.+ +.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|++
T Consensus 127 ~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~ 199 (250)
T PRK11264 127 ELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVI 199 (250)
T ss_pred HHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEE
Confidence 7889999987666544 569999999999999999999999999999999999999999999988642 566777
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+++.++||++++|++|++++.|+.+++.
T Consensus 200 ~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 200 VTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999887653
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=317.15 Aligned_cols=196 Identities=31% Similarity=0.568 Sum_probs=161.9
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCcc
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYP 765 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~~~G~i~i~g~~ 765 (1065)
.++|+|+++.++.. .+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57889998877431 23567999999999999999999999999999999999986632 568999999987
Q ss_pred CCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHH
Q 001507 766 KRQ--ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 843 (1065)
Q Consensus 766 ~~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 843 (1065)
+.. ...++.++|++|++.+++.+||+||+.+....+ .+. ....||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 235667999999999999999999998753210 122 13579999
Q ss_pred HHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEe
Q 001507 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 922 (1065)
Q Consensus 844 qrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~ 922 (1065)
||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|.+ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777766543367788999999985 788765
Q ss_pred C
Q 001507 923 G 923 (1065)
Q Consensus 923 g 923 (1065)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=349.27 Aligned_cols=211 Identities=29% Similarity=0.430 Sum_probs=174.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++. .++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+.. ++++++
T Consensus 324 ~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 324 ENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred cceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHee
Confidence 3555555443 37999999999999999999999999999999999999876 999999999877653 568899
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC-
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL- 162 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL- 162 (1065)
||+|+|.+|+. |+||||.++.... .++.+.++++..||
T Consensus 399 ~v~Q~p~lf~g-TireNi~l~~~~~----------------------------------------s~e~i~~al~~a~l~ 437 (559)
T COG4988 399 WVSQNPYLFAG-TIRENILLARPDA----------------------------------------SDEEIIAALDQAGLL 437 (559)
T ss_pred eeCCCCccccc-cHHHHhhccCCcC----------------------------------------CHHHHHHHHHHhcHH
Confidence 99999997775 9999999853210 01123344444443
Q ss_pred -----cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 163 -----DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 163 -----~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
+...||.+|+.+ ++|||||+|||++|||++.+++++++||||++||.++.+.|.+.|.++++ ++|+++++|
T Consensus 438 ~~v~~p~GLdt~ige~G-~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~---~ktvl~itH 513 (559)
T COG4988 438 EFVPKPDGLDTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK---QKTVLVITH 513 (559)
T ss_pred HhhcCCCcccchhccCC-CCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh---CCeEEEEEc
Confidence 446789999754 68999999999999999999999999999999999999999999999875 356666888
Q ss_pred CchHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
....+ .-+|+|++|++|++++.|.++++.+
T Consensus 514 rl~~~-~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 514 RLEDA-ADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred ChHHH-hcCCEEEEecCCceeccCCHHHHhh
Confidence 76654 4579999999999999999998853
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=333.12 Aligned_cols=206 Identities=28% Similarity=0.397 Sum_probs=171.5
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ 787 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP 89 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence 34679999999999999999999999999999999999876 568999999987543 2334569999999877788
Q ss_pred CCHHHHHHHHhh-ccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+||+||+.+... .+...........++++++++.+++.+..++.+ ..||||||||++|||||+.+|++++||||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999999987521 110000111223456788999999977666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.+...+.+.|+++.++|.|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 221 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLD-GGRVVAAGPP 221 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCCEEEecCH
Confidence 9999999999999999999877899999999987 5778899999998 4789998875
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=344.49 Aligned_cols=226 Identities=20% Similarity=0.247 Sum_probs=182.4
Q ss_pred HHHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC------
Q 001507 6 LRQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------ 78 (1065)
Q Consensus 6 ~~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~------ 78 (1065)
++++++.+... ....+|+||||+|++||+++|+|+||||||||+++|+|++++....+|+|.++|.++.....
T Consensus 15 i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~ 94 (330)
T PRK09473 15 VKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKL 94 (330)
T ss_pred EeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHH
Confidence 35566555422 23579999999999999999999999999999999999997632348999999998754321
Q ss_pred -CceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 79 -PRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 79 -~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
.+.++||+|++ .+.+.+||.+++.+......... ..+...++.+
T Consensus 95 r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~ 141 (330)
T PRK09473 95 RAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS---------------------------------KAEAFEESVR 141 (330)
T ss_pred hcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHH
Confidence 24799999998 67899999999976543221000 0011234778
Q ss_pred HHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 156 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 156 ~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
+++.+||++..+. + ++++++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ .+++++++
T Consensus 142 ~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~i 218 (330)
T PRK09473 142 MLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMI 218 (330)
T ss_pred HHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEE
Confidence 8999999764322 2 3566789999999999999999999999999999999999999999999998764 36778889
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+|+.+.+..++|+|++|++|++++.|+.+++.
T Consensus 219 THdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 219 THDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999998875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=345.82 Aligned_cols=194 Identities=27% Similarity=0.399 Sum_probs=168.8
Q ss_pred eeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 718 ~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 9999999999999999999999999999999877 568999999987632 1245679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.|+.... ......++++++++.+++.+..++.. ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12233456889999999988777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|++
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLE-DGRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEe-CCEEEEECCH
Confidence 999999999999999765 899999999986 5778899999998 5899998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=332.64 Aligned_cols=201 Identities=28% Similarity=0.358 Sum_probs=170.3
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCC-CCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~-~~~ 786 (1065)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 469999999999999999999999999999999999876 568999999987631 124567999999963 334
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
..||.||+.+..... .....+..+++.++++.+++.+..++.. ..||||||||++|||+|+.+|++|+||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998764321 1233444566889999999987777654 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|++++++|.|||+++|+++ .+.+.||++++|++ |++++.|+.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 221 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTP 221 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999777999999999986 56778999999984 899998875
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=331.03 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=169.3
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 457999999999999999999999999999999999986532 258999999987531 234567999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
+++.+||+||+.+....+. ........+.++++++.+++.. ..+. .+.+|||||||||+|||||+.+|+
T Consensus 96 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 168 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEPD 168 (258)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999988654331 1122334456788899998842 2222 235899999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~ 925 (1065)
+|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++|. +.|++++.|+.
T Consensus 169 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 169 VLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 999999999999999999999999986 4689999999986 5678899999997 25899999875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=336.19 Aligned_cols=215 Identities=27% Similarity=0.293 Sum_probs=175.9
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++. ...+|+|+||+|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .++.+
T Consensus 7 ~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 7 VEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred EEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhE
Confidence 3455555432 245999999999999999999999999999999999999775 999999998875432 23569
Q ss_pred EEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
+|++|++. .++..||+||+.|+....+.. ....+..++++++.+|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~ 127 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVR 127 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCC
Confidence 99999963 455689999998864321100 0001224778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++.++++.|+++++. +.||++++|+.++
T Consensus 128 L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~~~ 200 (274)
T PRK13647 128 MWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDL 200 (274)
T ss_pred CHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHH
Confidence 987776655 469999999999999999999999999999999999999999999998653 5677789999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+.++||++++|++|++++.|+++++
T Consensus 201 ~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 201 AAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999998653
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=314.99 Aligned_cols=173 Identities=61% Similarity=0.993 Sum_probs=151.4
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++. ..+++.++|++|++.+++.+|++|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHH
Confidence 5699999999999999999999999999999999997532246899999998764 344567999999998899999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCH
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~ 872 (1065)
|+.+...+ + .||||||||++|||||+.+|++|+|||||+|||+
T Consensus 99 ~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 99 ALRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 99864210 0 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
.++..+++.|++++++|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999887799999999998644567899999998548998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=338.61 Aligned_cols=207 Identities=18% Similarity=0.257 Sum_probs=169.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-C-eeEEEEEECCccCCc---cc----ccceEEEEcCCC-
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-G-IIEGDIYISGYPKRQ---ET----FARISGYCEQND- 782 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~-~-~~~G~i~i~g~~~~~---~~----~~~~~~~v~q~~- 782 (1065)
..+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.++.. .. +++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5799999999999999999999999999999999998652 1 468999999987642 11 224699999997
Q ss_pred -CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCce
Q 001507 783 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 861 (1065)
Q Consensus 783 -~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il 861 (1065)
.+.|.+|+.+++........ ....++..+++.++++.++|.+..+... ..+.+|||||||||+|||||+.+|+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~--~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLD--VYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHh--CCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 47888999998876543221 1234455677889999999965321111 123589999999999999999999999
Q ss_pred eecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 862 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 862 ~lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+||||+|||+.++..++++|+++.+ .|.|||++|||++ .+.+.+|++++|. +|+++..|+.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~-~G~ive~g~~ 238 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY-AGQVVETGKA 238 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999999976 4999999999986 4667899999998 5899999975
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=341.01 Aligned_cols=217 Identities=19% Similarity=0.257 Sum_probs=176.0
Q ss_pred HHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------C
Q 001507 7 RQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V 77 (1065)
Q Consensus 7 ~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-------~ 77 (1065)
+++++.+.+.. .+.+|+|||++|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++... .
T Consensus 6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHH
Confidence 45555554221 246999999999999999999999999999999999999876 99999999887432 1
Q ss_pred CCceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 78 PPRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 78 ~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
.++.++||+|++ .+++ .||+||+.|+....+.. ..+....+++
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~ 127 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMN----------------------------------LDEVKNYAHR 127 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHH
Confidence 245799999986 3454 59999998864321100 0011224778
Q ss_pred HHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 156 IMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 156 ~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
+++.+||. +..++. +..|||||||||+|||||+.+|+|++|||||+|||+.++..+.+.|+++.+. .++||++
T Consensus 128 ~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~ 201 (286)
T PRK13646 128 LLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIIL 201 (286)
T ss_pred HHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEE
Confidence 89999996 555544 4569999999999999999999999999999999999999999999998653 4677888
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+++.++||+|++|++|++++.|+++++.
T Consensus 202 vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 202 VSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999987764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=325.23 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=172.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-cccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv 790 (1065)
.+.+|+|+|++++|||+++|+||||||||||+++|+|..+ +..|+|.++|.++... ..++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 4579999999999999999999999999999999999877 4689999999876431 234679999999999889999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+....+. .......+.++++++.+++.+..+..+ ..||+|||||++|||+|+.+|++++|||||+||
T Consensus 90 ~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gL 161 (232)
T cd03300 90 FENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161 (232)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987654332 122334456788999999987776654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|. +|++++.|+.
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~-~G~~~~~~~~ 215 (232)
T cd03300 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMN-KGKIQQIGTP 215 (232)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 999999999999999764 899999999986 5678899999998 4799888863
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=335.81 Aligned_cols=216 Identities=21% Similarity=0.342 Sum_probs=177.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.++ ++.+|+|+||++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++
T Consensus 11 ~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 11 RGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhh
Confidence 45555443 346999999999999999999999999999999999998775 999999998765321 235
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||.||+.++...... .+. ......+.++++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~~~------------------------------~~~~~~~~~~l~~~ 131 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQ---LPA------------------------------PLLHSTVMMKLEAV 131 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccC---CCH------------------------------HHHHHHHHHHHHHc
Confidence 699999999889999999999875321100 000 00112367789999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+
T Consensus 132 gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~ 205 (269)
T PRK11831 132 GLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVP 205 (269)
T ss_pred CChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHH
Confidence 9988776654 469999999999999999999999999999999999999999999998653 3567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++..+||++++|++|++++.|+++++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 206 EVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999887763
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=324.41 Aligned_cols=196 Identities=27% Similarity=0.372 Sum_probs=165.5
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCccc-------ccceEEEEcCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET-------FARISGYCEQNDIHS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~-------~~~~~~~v~q~~~~~ 785 (1065)
..+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... .++.++|++|++.++
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 369999999999999999999999999999999999876 56899999998764311 135799999999898
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+.+|+.||+.+....+. .......++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||
T Consensus 101 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 101 PTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999987653321 122344567889999999977666543 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEE
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 921 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~ 921 (1065)
||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|.+ |+++.
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 99999999999999999999754 899999999986 34 56999999984 78764
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=302.01 Aligned_cols=208 Identities=27% Similarity=0.446 Sum_probs=174.1
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC---CceEEEEccccccCCC
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 94 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~ 94 (1065)
.+.+|++||++++|||+++|+||||||||||||.|+|.+.|+ +|++.+||.++.+... .+.-+..||+..+-..
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 356999999999999999999999999999999999999886 9999999999876543 3556899999877666
Q ss_pred CCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcc
Q 001507 95 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 174 (1065)
Q Consensus 95 lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 174 (1065)
.||+|-+.++..-.+.+.. +. +..+.++++|...++.+.+...
T Consensus 90 Ftv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~----- 132 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRD----- 132 (259)
T ss_pred eEHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccc-----
Confidence 7999999997543321110 10 1123477888899998876543
Q ss_pred cccCchhhhhhHHHHHHHhc------CCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhccc
Q 001507 175 LKGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248 (1065)
Q Consensus 175 ~~~LSGGqkqRv~ia~al~~------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~ 248 (1065)
...|||||||||.+||.|+. ++++||||||||+||...+..+++..++++++ + ..|+.+.||.+.+..+||+
T Consensus 133 y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhe
Confidence 45799999999999999984 44699999999999999999999999999975 3 5566688999999999999
Q ss_pred EEEecCCcEEEEcCcchHH
Q 001507 249 VILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 249 v~~l~~G~i~~~G~~~~~~ 267 (1065)
|++|++||++..|++++++
T Consensus 211 ivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeCCeEeecCCHHHhc
Confidence 9999999999999998875
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=321.30 Aligned_cols=191 Identities=24% Similarity=0.360 Sum_probs=162.7
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC---c----ccccceEEEEcCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---Q----ETFARISGYCEQNDI 783 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~~~v~q~~~ 783 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.
T Consensus 9 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 86 (206)
T TIGR03608 9 GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA 86 (206)
T ss_pred CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh
Confidence 34579999999999999999999999999999999999876 56899999998742 1 124567999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++.+|++||+.+....+. .......+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|
T Consensus 87 ~~~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 87 LIENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred hccCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999998654321 223344566889999999977766654 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEE
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
||||+|||+.++..+.+.|+++.++|.|||++||++. ..+.+|++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999999999999999999999777999999999975 34679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=344.48 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=180.4
Q ss_pred HHHhhhhcCCcc-ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC-ceeEEEEECCccCCCCCC-----
Q 001507 6 LRQLRIYRGNRS-KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP----- 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~-~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~-~~~G~i~~~g~~~~~~~~----- 78 (1065)
++++++.++.+. ...+|+||||+|++||+++|+|+||||||||+++|+|++.+.. +.+|+|.++|.++.....
T Consensus 6 v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~ 85 (326)
T PRK11022 6 VDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85 (326)
T ss_pred EeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 456666664422 2579999999999999999999999999999999999986421 358999999998754321
Q ss_pred --CceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHH
Q 001507 79 --PRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154 (1065)
Q Consensus 79 --~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (1065)
++.++||+|++ .+.|.+||.+++........... ..+..+++.
T Consensus 86 ~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~ 132 (326)
T PRK11022 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAI 132 (326)
T ss_pred HhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHH
Confidence 23699999998 47888999999876543211000 001123478
Q ss_pred HHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 155 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 155 ~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
++|+.+||.+..+. -++.+.+|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.++ .+.++++
T Consensus 133 ~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~ 209 (326)
T PRK11022 133 DLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVL 209 (326)
T ss_pred HHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEE
Confidence 89999999752211 12445679999999999999999999999999999999999999999999998764 3567888
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+.+..++|+|++|++|++++.|+.+++.
T Consensus 210 iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 210 ITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999988875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=335.49 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=167.1
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCC--C
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 783 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~--~ 783 (1065)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 469999999999999999999999999999999999876 568999999987542 23456799999986 3
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
+++ .|++||+.|...... ...++..+.++++++.+++.. ..+.. +..||||||||++|||||+.+|++||
T Consensus 98 ~~~-~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LFE-ETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hcc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 444 699999987643321 223334456788899999963 44443 35799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|. +|++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 229 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLE-KGKLVLSGKP 229 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999777999999999986 5667899999998 5899988875
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.07 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=165.7
Q ss_pred ccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCC
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND 782 (1065)
Q Consensus 710 ~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~ 782 (1065)
++++.+ |+||++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 344555 99999999 9999999999999999999999876 568999999987531 12356799999999
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
.+++.+|++||+.+..... ......++++++++.+++.+..+... ..||||||||++|||+|+.+|++|+
T Consensus 85 ~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998999999998764321 12334456788999999976665543 5799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|. +|+++..|
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 214 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVME-DGRLQYIG 214 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEE-CCEEEecC
Confidence 99999999999999999999999765 899999999986 4667899999998 47887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=337.00 Aligned_cols=224 Identities=19% Similarity=0.245 Sum_probs=178.6
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-eeEEEEEECCcc
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYP 765 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~~~G~i~i~g~~ 765 (1065)
-+.++|++..+.. ..+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~---------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFST---------PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEec---------CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 3566776655421 012357999999999999999999999999999999999987631 238999999988
Q ss_pred CCc---cc---c-cceEEEEcCCC--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCC
Q 001507 766 KRQ---ET---F-ARISGYCEQND--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836 (1065)
Q Consensus 766 ~~~---~~---~-~~~~~~v~q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 836 (1065)
+.. .. + ++.++||+|++ .+.|.+|+.+++.+...... .....+..+++.++++.++|.+..+... ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~--~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMK--MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhc--CC
Confidence 642 11 2 24799999997 67889999999976544322 1234445567888999999865332211 22
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
+.+|||||||||+|||||+.+|++||+||||++||+.++..++++|+++.++ |.|||++|||++ .+...+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 4689999999999999999999999999999999999999999999999765 899999999986 4667899999998
Q ss_pred CcEEEEeCCC
Q 001507 916 GGELIYAGPL 925 (1065)
Q Consensus 916 gg~~~~~g~~ 925 (1065)
+|++++.|+.
T Consensus 237 ~G~ive~g~~ 246 (330)
T PRK09473 237 AGRTMEYGNA 246 (330)
T ss_pred CCEEEEECCH
Confidence 5899999985
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=339.08 Aligned_cols=202 Identities=26% Similarity=0.290 Sum_probs=171.4
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCC--CC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IH 784 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~--~~ 784 (1065)
..+|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++||+|++ .+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 579999999999999999999999999999999999876 468999999987643 13456799999997 57
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
.+.+|+.+++.+...... .....+..+++.++++.++|.+ ..+.. +..|||||||||+|||||+.+|++||+
T Consensus 106 ~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 106 NPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred CCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 889999999976543321 1234455667899999999953 44443 358999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||++||..++..++++|+++.++ |.|||++|||++ .+.+.+|++++|. .|++++.|+.
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~G~ive~g~~ 239 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-LGRCVEKGTK 239 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999764 999999999986 4667899999998 5899999975
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=328.62 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=166.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCC---CCCeeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 457999999999999999999999999999999999962 221248999999987642 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|+.||+.+....+.. ...+...+.++++++.+++.+....... ..+..||||||||++|||+|+.+|++|+|
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 876 5999999876543311 1122334567889999988542211111 12357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|++++|+ +|++++.|+.
T Consensus 171 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~-~G~~~~~~~~ 229 (250)
T PRK14245 171 DEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY-MGEMVEYDDT 229 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999985 5899999999986 5778899999998 5899999875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=327.55 Aligned_cols=219 Identities=26% Similarity=0.356 Sum_probs=173.7
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC---CCeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~---~~~~~G~i~i~g 763 (1065)
.+.++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|... ..+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFY-------------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEE-------------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 46677776554 23569999999999999999999999999999999999742 113689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
+++.. ..+++.++|++|++.+++ .||+||+.+....+.. ...+...++++++++.+++.+....... ..+.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ESAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 134567999999988887 5999999887543311 1223334567888999888542111111 1235
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|.+ |+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999985 4799999999986 56788999999984 79
Q ss_pred EEEeCCC
Q 001507 919 LIYAGPL 925 (1065)
Q Consensus 919 ~~~~g~~ 925 (1065)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14242 226 LIEVGPT 232 (253)
T ss_pred EEEeCCH
Confidence 9988864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=331.78 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=169.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc------cccceEEEEcCCC--C
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--I 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~~~v~q~~--~ 783 (1065)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 4679999999999999999999999999999999999876 5689999999876421 1356799999996 4
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
+.+.+||+||+.+...... ........++++++++.+++. ...+... ..||||||||++|||||+.+|++||
T Consensus 101 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6678999999977543111 112233445678999999995 5555443 5799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ .+...+|++++|. +|++++.|+.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 235 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KGQIVEECDV 235 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CCEEEEECCH
Confidence 99999999999999999999999765 899999999986 5667899999998 5899999875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=320.57 Aligned_cols=198 Identities=24% Similarity=0.294 Sum_probs=167.0
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCHHHH
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 793 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~ 793 (1065)
+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3569999999999999999999999999999999877 568999999987643 2345679999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHH
Q 001507 794 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873 (1065)
Q Consensus 794 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~ 873 (1065)
+.+...... . ......++++++++.+++.+..++.. ..||||||||++|||+|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987532211 1 11223456788999999987766543 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 001507 874 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 924 (1065)
++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|. +|+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999999764 899999999976 5667899999998 589988764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=325.49 Aligned_cols=202 Identities=30% Similarity=0.407 Sum_probs=172.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-cccceEEEEcCCCCCCCCCCH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv 790 (1065)
++.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 4579999999999999999999999999999999999876 5689999999876432 234679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.||+.+....+. .......+.++++++.+++.+..+... ..||+||+||++|||+|+.+|++++|||||+||
T Consensus 90 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~L 161 (237)
T TIGR00968 90 RDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGAL 161 (237)
T ss_pred HHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987654331 122333456788999999977666543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 162 D~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 162 DAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 999999999999998765 899999999986 5678899999998 5899998875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=327.85 Aligned_cols=209 Identities=22% Similarity=0.308 Sum_probs=168.5
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC-CeeEEEEEECCccCCc---ccccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~-~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|+++.. ..+++.++|++|++.+++
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 345799999999999999999999999999999999997531 2468999999987643 234567999999988887
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.|++||+.+....+.... ......++++++++.+++.+...... ......||||||||++|||||+.+|++|+||||
T Consensus 93 -~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 169 (246)
T PRK14269 93 -KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEP 169 (246)
T ss_pred -ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999988654331111 12233456788999999853211111 112357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|. +|+++..|+.
T Consensus 170 ~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 225 (246)
T PRK14269 170 TSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH-LGELIEFGES 225 (246)
T ss_pred cccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE-CCEEEEECCH
Confidence 999999999999999999864 899999999986 5777899999998 5899998874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=326.91 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=167.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.++ .+..+|+|+||++++|++++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .++
T Consensus 5 ~~l~~~~~--~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 5 HNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EeeeEEeC--CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHh
Confidence 44555542 1246999999999999999999999999999999999998765 999999998875432 235
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.++....+... ...+..++++++.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~ 125 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQV 125 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHc
Confidence 79999999998989999999988643221000 00122377889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +++|++++|+.+
T Consensus 126 ~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~ 198 (214)
T TIGR02673 126 GLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDLS 198 (214)
T ss_pred CChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHH
Confidence 9987666554 469999999999999999999999999999999999999999999998642 567777999999
Q ss_pred HHHhhcccEEEecCCc
Q 001507 241 EAYELFDDVILLSEGQ 256 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~ 256 (1065)
++..+||++++|++|+
T Consensus 199 ~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 199 LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhcCEEEEecCCC
Confidence 9999999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=329.99 Aligned_cols=214 Identities=20% Similarity=0.322 Sum_probs=176.2
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-----CCCce
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRT 81 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-----~~~~~ 81 (1065)
+++++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++... ..++.
T Consensus 5 ~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 5 KNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhc
Confidence 34555443 246999999999999999999999999999999999998775 99999999887542 12457
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhc-cCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
++|++|++.+++.+||+||+.++... .+. + .......++++++.+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----~------------------------------~~~~~~~~~~~l~~~ 124 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGA----S------------------------------KEEAEKQARELLAKV 124 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCC----C------------------------------HHHHHHHHHHHHHHc
Confidence 99999999888889999999875321 100 0 000122367889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||++..+..+ +.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+. +++|++++|+.+
T Consensus 125 gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~ 197 (240)
T PRK09493 125 GLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIG 197 (240)
T ss_pred CChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHH
Confidence 9987666544 469999999999999999999999999999999999999999999988642 567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++..+||++++|++|++++.|+..++.
T Consensus 198 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 198 FAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999887653
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=363.61 Aligned_cols=210 Identities=22% Similarity=0.332 Sum_probs=176.6
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+||||++++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+|||+|++.+++
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 34579999999999999999999999999999999999876433689999999876432 12456999999998889
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+||+||+.+....+...........++++++++.+++.+..+..+ ..|||||||||+|||||+.+|+|||||||
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEP 170 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILDEP 170 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988653321111122334456889999999987766654 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|+|||+.++..+++.|++++++|.|||++||+++ .+...||++++|+ +|++++.|+..+
T Consensus 171 t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~-~G~i~~~~~~~~ 229 (506)
T PRK13549 171 TASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR-DGRHIGTRPAAG 229 (506)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE-CCEEeeeccccc
Confidence 9999999999999999999877999999999986 5677899999998 589999998754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=325.58 Aligned_cols=218 Identities=33% Similarity=0.480 Sum_probs=172.1
Q ss_pred HHHhhhhcCCcc-ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEE
Q 001507 6 LRQLRIYRGNRS-KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~-~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~y 84 (1065)
++++.+.+.+.. .+++|+|+||++++||+++|+||||||||||+++|+|.+++..+.+|+|.++|.++.....++.++|
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~ 85 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAY 85 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEE
Confidence 445666654332 4679999999999999999999999999999999999987211249999999987754344567999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH-HHHHhCCc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY-IMKILGLD 163 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~ 163 (1065)
++|++.+++.+||+||+.|+........... ......++. .++.+++.
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~l~ 134 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSD-------------------------------AIRKKRVEDVLLRDLALT 134 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccch-------------------------------HHHHHHHHHHHHHhhcch
Confidence 9999998999999999998654321100000 000112344 78888887
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc-hHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA-PEA 242 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~-~~~ 242 (1065)
+..++. ++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.++++.+. +.++++++|+. +++
T Consensus 135 ~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~--~~tiii~sh~~~~~~ 207 (226)
T cd03234 135 RIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDL 207 (226)
T ss_pred hhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCCHHH
Confidence 665544 4569999999999999999999999999999999999999999999988643 45666678887 689
Q ss_pred HhhcccEEEecCCcEEEEc
Q 001507 243 YELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G 261 (1065)
.++||++++|++|++++.|
T Consensus 208 ~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 208 FRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCEEEEEeCCEEEecC
Confidence 9999999999999998875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=328.28 Aligned_cols=216 Identities=23% Similarity=0.302 Sum_probs=174.6
Q ss_pred eeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEEC
Q 001507 686 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYIS 762 (1065)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~ 762 (1065)
..+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++
T Consensus 12 ~~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 12 SKIQVRNLNFYY-------------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred ceEEEEEEEEEe-------------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 346677776554 23469999999999999999999999999999999999864 1 1368999999
Q ss_pred CccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCccc
Q 001507 763 GYPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIG 833 (1065)
Q Consensus 763 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~ 833 (1065)
|.++.. ..+++.++|++|++.+++ .|++||+.+....+. ........++++++++.+++.+ ..+.
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 152 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQ--- 152 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhc---
Confidence 987632 234567999999988877 899999987653221 1223334456788999998742 2222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEE
Q 001507 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 834 ~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
....||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||+++ .+...+|++++|
T Consensus 153 --~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 153 --SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred --CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 235799999999999999999999999999999999999999999999985 4789999999986 566789999999
Q ss_pred ecCcEEEEeCCC
Q 001507 914 KRGGELIYAGPL 925 (1065)
Q Consensus 914 ~~gg~~~~~g~~ 925 (1065)
+ +|+++..|+.
T Consensus 229 ~-~G~i~~~g~~ 239 (260)
T PRK10744 229 Y-LGELIEFGNT 239 (260)
T ss_pred E-CCEEEEeCCH
Confidence 8 5899998874
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=340.26 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=175.8
Q ss_pred HHHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------
Q 001507 6 LRQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF------- 76 (1065)
Q Consensus 6 ~~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~------- 76 (1065)
++++++.+++.. .+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++...
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHH
Confidence 345566554321 246999999999999999999999999999999999999876 99999999876432
Q ss_pred CCCceEEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 77 VPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 77 ~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
..++.++|++|++. .+..+||+||+.|+....... . .+...++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~-------------------------------~~~~~~~~~ 127 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFS---E-------------------------------DEAKEKALK 127 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCC---H-------------------------------HHHHHHHHH
Confidence 12346999999962 333589999998864321100 0 001224778
Q ss_pred HHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 156 IMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 156 ~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
+++.+||. +..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|++
T Consensus 128 ~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvli 200 (287)
T PRK13641 128 WLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVIL 200 (287)
T ss_pred HHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEE
Confidence 89999996 4555544 46999999999999999999999999999999999999999999999864 3677788
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+++.++||++++|++|++++.|+++++.
T Consensus 201 vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 201 VTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999987664
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=324.21 Aligned_cols=197 Identities=28% Similarity=0.428 Sum_probs=166.9
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC--CCceEEEEccccccCCCCC
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lT 96 (1065)
..+|+|+||++++| +++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 46999999999999 99999999999999999999998775 999999998765421 2457999999999899999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|+||+.+.....+... .+.+..++++++.+||++..++.+ .
T Consensus 89 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (211)
T cd03264 89 VREFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKI-----G 129 (211)
T ss_pred HHHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCch-----h
Confidence 9999987543221000 001223778899999987776655 4
Q ss_pred cCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCc
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~ 256 (1065)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|++++|+.+++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998863 3 677889999999999999999999999
Q ss_pred EEEEc
Q 001507 257 IVYQG 261 (1065)
Q Consensus 257 i~~~G 261 (1065)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=343.36 Aligned_cols=190 Identities=24% Similarity=0.365 Sum_probs=167.0
Q ss_pred eeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 718 ~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 568999999987532 1245679999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.|+.. ....++++++++.+++.+..+..+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 112345789999999987776654 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|+ +|+++..|++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~-~G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLE-QGKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEe-CCEEEEecCH
Confidence 999999999999999765 899999999986 6788899999998 5899999875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=327.75 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=175.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC--CCceEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAY 84 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~--~~~~~~y 84 (1065)
+++++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ..+.++|
T Consensus 5 ~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 5 AGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEE
Confidence 34555443 246999999999999999999999999999999999998775 999999998765422 2246999
Q ss_pred EccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
++|++.+++.+|++||+.+.....+... ......++++++.+||++
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~ 124 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAE 124 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChh
Confidence 9999988889999999987543221000 001123678899999987
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. .++++++++|+.+++..
T Consensus 125 ~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~ 198 (236)
T TIGR03864 125 RADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRD-QGLSVLWATHLVDEIEA 198 (236)
T ss_pred hhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecChhhHhh
Confidence 766654 469999999999999999999999999999999999999999999998753 35667779999999865
Q ss_pred hcccEEEecCCcEEEEcCcchHHH
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+|++++|++|++++.|+++++.+
T Consensus 199 -~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 199 -DDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred -CCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999998876643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=328.44 Aligned_cols=220 Identities=23% Similarity=0.281 Sum_probs=175.1
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+.++|+++.+ +++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFY-------------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEE-------------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 46677776554 335799999999999999999999999999999999998652 13689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
.++.. ..+++.++|++|++.+++. |+.||+.|....+.. ........++++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 2345679999999888875 999999987543311 11223334567889999998542111111 1235
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++|. +|+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~-~G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH-LGN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999865 789999999986 5667899999998 589
Q ss_pred EEEeCCC
Q 001507 919 LIYAGPL 925 (1065)
Q Consensus 919 ~~~~g~~ 925 (1065)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9988864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=346.44 Aligned_cols=214 Identities=27% Similarity=0.473 Sum_probs=179.4
Q ss_pred cceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECC
Q 001507 684 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 763 (1065)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g 763 (1065)
.++.++.+|+++.++ +++++++|+|+++++|+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 455666678777653 23489999999999999999999999999999999999987 5789999999
Q ss_pred ccC---CcccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccC------cccC
Q 001507 764 YPK---RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA------LIGL 834 (1065)
Q Consensus 764 ~~~---~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~------~~~~ 834 (1065)
.+. +...+++.++||+|++.+++. |++||+.++. + +.+ ++.+.++++..++.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 875 346788999999999999876 9999998752 1 122 3446788888888766543 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 835 ~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
+.++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3568999999999999999999999999999999999999999999999875 599999999974 567789999998
Q ss_pred cCcEEEEeCCCC
Q 001507 915 RGGELIYAGPLG 926 (1065)
Q Consensus 915 ~gg~~~~~g~~~ 926 (1065)
+|+++..|...
T Consensus 529 -~G~l~~~g~~~ 539 (559)
T COG4988 529 -NGRLVEQGTHE 539 (559)
T ss_pred -CCceeccCCHH
Confidence 58999999764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=326.94 Aligned_cols=204 Identities=26% Similarity=0.361 Sum_probs=168.0
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCce
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRT 81 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~ 81 (1065)
++++.+++. +.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.
T Consensus 5 ~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 5 NVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHh
Confidence 444444321 46999999999999999999999999999999999998775 999999998775432 2356
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++.+||+||+.++....+.. . ......++++++.+|
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~ 125 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVP--P--------------------------------REIRKRVPAALELVG 125 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcC
Confidence 999999999899999999998864322100 0 001123678899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|++..++.+ .+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +++|++++|+.++
T Consensus 126 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~~~ 198 (214)
T cd03292 126 LSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAKEL 198 (214)
T ss_pred CHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHH
Confidence 987666554 469999999999999999999999999999999999999999999998642 5677779999999
Q ss_pred HHhhcccEEEecCCcE
Q 001507 242 AYELFDDVILLSEGQI 257 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i 257 (1065)
+.++||++++|++|++
T Consensus 199 ~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 199 VDTTRHRVIALERGKL 214 (214)
T ss_pred HHHhCCEEEEEeCCcC
Confidence 9999999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=339.99 Aligned_cols=212 Identities=22% Similarity=0.385 Sum_probs=174.2
Q ss_pred cceeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECC
Q 001507 684 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 763 (1065)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g 763 (1065)
.+-+++|+|+++.+. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|+|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 344689999988763 34569999999999999999999999999999999999765 479999999
Q ss_pred ccCC---cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccCccc
Q 001507 764 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIG 833 (1065)
Q Consensus 764 ~~~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~ 833 (1065)
+++. .+.+|+.+||||||..+|.+ ||.+|+.|+. .+.+. +.|-++.+..++.+. -.+.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn-----~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGN-----PSASD----EEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCC-----CCcCH----HHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 8864 46788999999999888754 9999999863 22232 234455555555432 233455
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEE
Q 001507 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 834 ~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
..+ ..|||||||||+||||++.+|+|+++|||||.||.++.+.+++.+.+. ..|+|+|++.|+.+ +...||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 443 469999999999999999999999999999999999999999999994 46999999999965 67889999999
Q ss_pred ecCcEEEEeCCC
Q 001507 914 KRGGELIYAGPL 925 (1065)
Q Consensus 914 ~~gg~~~~~g~~ 925 (1065)
++ |++...|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 85 789988875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=331.41 Aligned_cols=209 Identities=25% Similarity=0.395 Sum_probs=170.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC------eeEEEEEECCccCCc---ccccceEEEEcCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------IIEGDIYISGYPKRQ---ETFARISGYCEQN 781 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~------~~~G~i~i~g~~~~~---~~~~~~~~~v~q~ 781 (1065)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..++. ..+|+|.++|.++.. ..+++.++|++|+
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 3467999999999999999999999999999999999987621 027999999987632 2345568999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHH-----
Q 001507 782 DIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV----- 855 (1065)
Q Consensus 782 ~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~----- 855 (1065)
+..++.+|++||+.+....... ......+..+.++++++.+++.+..++.. ..|||||||||+|||+|+
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~ 166 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPP 166 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccc
Confidence 8766679999999875321110 01111233456788999999987666543 579999999999999999
Q ss_pred ----hCCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 856 ----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 856 ----~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ .+...+|++++|. +|++++.|+..
T Consensus 167 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~-~G~i~~~g~~~ 240 (272)
T PRK13547 167 HDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLA-DGAIVAHGAPA 240 (272)
T ss_pred cccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCeEEEecCHH
Confidence 599999999999999999999999999999765 899999999986 5667899999998 58999988753
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=330.66 Aligned_cols=201 Identities=24% Similarity=0.348 Sum_probs=170.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 787 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~ 787 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .++.
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 3569999999999999999999999999999999999876 568999999987643 234667999999974 5677
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
+|++||+.+..... ....++..+.++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998864322 1223334556789999999987766654 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..+|++++|. +|+++..|+.
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~~~g~~ 226 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFS-EGKLIAQGKP 226 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999766 599999999986 34 4799999998 5899888875
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=342.01 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=174.2
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCceEEEEcccc--c
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 90 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~~~yv~Q~~--~ 90 (1065)
+.+|+||||+|++||+++|+|+||||||||+++|+|++.+. +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999998765 899999998875432 245799999997 5
Q ss_pred cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc-ccccc
Q 001507 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 169 (1065)
Q Consensus 91 ~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~ 169 (1065)
+.+.+||.+++.+......... ..+...++.++++.+||.. ..++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------------------------------AAERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------------------------------HHHHHHHHHHHHHHCCCChHHhcC-
Confidence 7888999999977543221000 0011234788999999963 4454
Q ss_pred ccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccE
Q 001507 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 170 vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v 249 (1065)
.++.|||||||||+|||||+.+|++|++||||+|||..++.++++.|+++.++ .++++++++|+...+..++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 44579999999999999999999999999999999999999999999998764 3567888999999999999999
Q ss_pred EEecCCcEEEEcCcchHH
Q 001507 250 ILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 250 ~~l~~G~i~~~G~~~~~~ 267 (1065)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=323.89 Aligned_cols=199 Identities=27% Similarity=0.383 Sum_probs=170.8
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCHHHH
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 793 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~ 793 (1065)
+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999876 568999999987643 1234679999999999989999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHH
Q 001507 794 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873 (1065)
Q Consensus 794 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~ 873 (1065)
+.+..... ........+.+.++++.+++.+..++.+ ..||||||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223334456788999999987776654 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 874 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 874 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
++..+.+.|++++.+ |+|||++||++. ++.+.+|++++|. +|++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIML-NGKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999998764 999999999986 5677899999998 4799988875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=291.71 Aligned_cols=213 Identities=22% Similarity=0.307 Sum_probs=179.7
Q ss_pred cccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--------------
Q 001507 703 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------------- 768 (1065)
Q Consensus 703 ~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------------- 768 (1065)
+.+..+.++...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+ |..|.|.+||..+..
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 3445566788899999999999999999999999999999999998766 568999999975311
Q ss_pred --ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHH
Q 001507 769 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 846 (1065)
Q Consensus 769 --~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrq 846 (1065)
..+|...|+|+|+..++..+||.||+.-+..-- ...++.+..++.+..+...|+.+.++... ..|||||+|
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQ 159 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQ 159 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHH
Confidence 123445799999999999999999997543211 12345666677888999999988877543 479999999
Q ss_pred HHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 847 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 847 r~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|++|||||+.+|+++++|||||.|||+-.-++++.+++|+++|+|.+++||.+.. ..+...++++|. .|.+...||+.
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~ 237 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChH
Confidence 9999999999999999999999999999999999999999999999999999764 445678999998 58999999973
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=327.13 Aligned_cols=208 Identities=19% Similarity=0.303 Sum_probs=167.5
Q ss_pred HHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC-------
Q 001507 7 RQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------- 78 (1065)
Q Consensus 7 ~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~------- 78 (1065)
+++++.+++. ..+++|+|+||++++|++++|+|||||||||||++|+|.+.|. +|+|.++|.++.....
T Consensus 5 ~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHH
Confidence 3455555322 2256999999999999999999999999999999999998775 9999999988754321
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++.+||+||+.+....... +. .+....+.++++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~----~~------------------------------~~~~~~~~~~l~ 127 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKK----SV------------------------------KEAKERAYEMLE 127 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCC----CH------------------------------HHHHHHHHHHHH
Confidence 14699999999888889999999885432110 00 001123677899
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||++..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++|+
T Consensus 128 ~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~tH~ 201 (221)
T TIGR02211 128 KVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHD 201 (221)
T ss_pred HcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 999987666554 469999999999999999999999999999999999999999999988653 24667778999
Q ss_pred chHHHhhcccEEEecCCcEE
Q 001507 239 APEAYELFDDVILLSEGQIV 258 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~ 258 (1065)
.+++.. +|++++|++|+++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhh-cCEEEEEeCCEec
Confidence 988755 7999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=332.06 Aligned_cols=216 Identities=19% Similarity=0.326 Sum_probs=176.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~ 81 (1065)
++++++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.
T Consensus 6 ~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 6 AKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred EeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhC
Confidence 345555553 246999999999999999999999999999999999998775 999999998875432 2356
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++.+||+||+.+....... .+ ....+..++++++.+|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~---~~------------------------------~~~~~~~~~~~l~~~~ 126 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDD---LS------------------------------AEQREDRANELMEEFH 126 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccc---cC------------------------------HHHHHHHHHHHHHHcC
Confidence 99999999888889999999875322100 00 0001234778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..+.. .+.|||||||||+||||++.+|++++|||||+|||+.++..+.+.++.++. .+.+|++++|+.++
T Consensus 127 l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~g~tiii~sH~~~~ 199 (241)
T PRK10895 127 IEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD--SGLGVLITDHNVRE 199 (241)
T ss_pred CHHHhhcc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEEcCHHH
Confidence 98765544 456999999999999999999999999999999999999999999998764 35677778999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+.++||++++|++|++++.|+++++.
T Consensus 200 ~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 200 TLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999999999887653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=331.94 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=172.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 86 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~ 86 (1065)
+++++.+++ +.+|+|+||+|++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.. ....++|++
T Consensus 5 ~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~ 76 (255)
T PRK11248 5 SHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVF 76 (255)
T ss_pred EEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEe
Confidence 345554432 46999999999999999999999999999999999998775 9999999987653 234589999
Q ss_pred cccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccc
Q 001507 87 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 166 (1065)
Q Consensus 87 Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 166 (1065)
|++.+++.+||+||+.++....+.. . ......++++++.+||.+..
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~l~~~gl~~~~ 122 (255)
T PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGVE---K-------------------------------MQRLEIAHQMLKKVGLEGAE 122 (255)
T ss_pred CCCccCCCCcHHHHHHhHHHHcCCC---H-------------------------------HHHHHHHHHHHHHcCChhHh
Confidence 9998888899999998754321100 0 00112377889999998766
Q ss_pred cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhc
Q 001507 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 246 (1065)
Q Consensus 167 ~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~ 246 (1065)
++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++..+|
T Consensus 123 ~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~ 196 (255)
T PRK11248 123 KRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMA 196 (255)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhC
Confidence 6544 469999999999999999999999999999999999999999999988543 3566777999999999999
Q ss_pred ccEEEec--CCcEEEEcCcc
Q 001507 247 DDVILLS--EGQIVYQGPRV 264 (1065)
Q Consensus 247 D~v~~l~--~G~i~~~G~~~ 264 (1065)
|++++|+ +|+++..++..
T Consensus 197 d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 197 TELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEEeCCCcEEEEEecCC
Confidence 9999998 59999988653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=327.79 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=166.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~l 788 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 4579999999999999999999999999999999999876 568999999987532 234567999999988876 6
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
|++||+.+....+ . ...++++++++.+++. +..++. +..||||||||++|||||+.+|++|+|||||
T Consensus 92 tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 92 TVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred hHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999998653221 1 1124567889999996 444443 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|. +|+++..|++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 216 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN-KGILVEYAKT 216 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 999999999999999999764 899999999986 5677899999998 5789888875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=335.93 Aligned_cols=217 Identities=24% Similarity=0.330 Sum_probs=177.9
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.... .++.+
T Consensus 8 ~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 8 VEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred EEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhhe
Confidence 4556665532 1245999999999999999999999999999999999999876 999999999875432 24579
Q ss_pred EEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
+|++|++. .++..||+||+.++....+.. ..+....++++++.+|
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 129 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVP----------------------------------REEMVERVDQALRQVG 129 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 99999974 577789999998864322100 0001224788899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++++. .++||++++|+.++
T Consensus 130 L~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~ 203 (279)
T PRK13635 130 MEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDE 203 (279)
T ss_pred ChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHH
Confidence 988776655 469999999999999999999999999999999999999999999998753 36777779999998
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+. .||++++|++|++++.|+.+++.
T Consensus 204 ~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 204 AA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HH-cCCEEEEEECCEEEEECCHHHHh
Confidence 86 59999999999999999987764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=374.47 Aligned_cols=221 Identities=25% Similarity=0.386 Sum_probs=184.2
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC---CceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~---~~~~ 82 (1065)
++++++.|+.+++.+||+|+|+++++|+.+||||||||||||.+.+|-..+.|+ +|.|.+||.++++... |+++
T Consensus 990 ~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 990 FRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhc
Confidence 578899999999999999999999999999999999999999999999998775 9999999999987753 6789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|.|.|+|.+|.. |+||||.++.. ....+.+.++++.. +.-==..+|
T Consensus 1067 ~lVsQEP~LF~~-TIrENI~YG~~----~vs~~eIi~Aak~A-----------------------------NaH~FI~sL 1112 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNG-TIRENIAYGSE----EVSEEEIIEAAKLA-----------------------------NAHNFISSL 1112 (1228)
T ss_pred ceeccCchhhcc-cHHHHHhccCC----CCCHHHHHHHHHHh-----------------------------hhHHHHhcC
Confidence 999999998874 99999999721 11112222222111 000113579
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++.+||.||+++. +||||||||++||||+++||+||||||.||+||+++.+-+.+.|.+... ++|+|+ +.|-.+.
T Consensus 1113 P~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~Iv-IAHRLST- 1187 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIV-IAHRLST- 1187 (1228)
T ss_pred cCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEE-Eecchhh-
Confidence 9999999999876 7999999999999999999999999999999999999999999998743 566666 5666554
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
.+.||.|+|+++|+|+++|++++++.
T Consensus 1188 IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1188 IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hhcCCEEEEEECCEEEecccHHHHHh
Confidence 46789999999999999999999975
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=345.18 Aligned_cols=195 Identities=25% Similarity=0.394 Sum_probs=169.9
Q ss_pred CceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------CCCceEEEEccccccCCCCC
Q 001507 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 24 ~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 96 (1065)
|+||++++||+++|+|||||||||||++|+|.+.|+ +|+|.++|.++... ..++.++||+|++.+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999998776 99999999876431 12467999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|+||+.|+.... ....++++++.+||.+..+..+ .
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998753100 0123778899999987766554 4
Q ss_pred cCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCc
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~ 256 (1065)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999998764 35677779999999999999999999999
Q ss_pred EEEEcCcchHH
Q 001507 257 IVYQGPRVSVL 267 (1065)
Q Consensus 257 i~~~G~~~~~~ 267 (1065)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=312.52 Aligned_cols=171 Identities=54% Similarity=0.916 Sum_probs=152.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCC--CCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~--~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|+++.....++.++|++|++.+++.+|+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH
Confidence 56999999999999999999999999999999999987 6 5789999999987544456779999999988899999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+....+ .||||||||++|||||+.+|++++|||||+||
T Consensus 100 ~~~i~~~~~~~-------------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 100 RETLMFAAKLR-------------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred HHHHHHHHHhc-------------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 99997642100 49999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|+.++..+.+.|+++.++|+|||+++|+++.++.+.+|++++|.+ |++++.|
T Consensus 143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 999999999999999777999999999986457778999999984 7887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=326.64 Aligned_cols=220 Identities=21% Similarity=0.262 Sum_probs=176.6
Q ss_pred eeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEEC
Q 001507 686 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYIS 762 (1065)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~ 762 (1065)
..+.++|+++.+ +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+.+|+|.++
T Consensus 19 ~~l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (267)
T PRK14237 19 IALSTKDLHVYY-------------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR 85 (267)
T ss_pred eEEEEeeEEEEE-------------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEEC
Confidence 356777776554 345799999999999999999999999999999999998642 1468999999
Q ss_pred CccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCC
Q 001507 763 GYPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGI 837 (1065)
Q Consensus 763 g~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 837 (1065)
|.++.. ...++.++|++|++.+++ .||+||+.+...... ........++++++++.+++.+..+.... ..+
T Consensus 86 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 161 (267)
T PRK14237 86 GIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQVKDDLH-KSA 161 (267)
T ss_pred CEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCc
Confidence 987632 134567999999988877 599999988643221 11233344567888999988532211111 224
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001507 838 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917 (1065)
Q Consensus 838 ~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 917 (1065)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|. +|
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~-~G 238 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY-LG 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-CC
Confidence 6899999999999999999999999999999999999999999999985 4799999999986 5778899999998 58
Q ss_pred EEEEeCCC
Q 001507 918 ELIYAGPL 925 (1065)
Q Consensus 918 ~~~~~g~~ 925 (1065)
++++.|+.
T Consensus 239 ~i~~~g~~ 246 (267)
T PRK14237 239 DLIEYDKT 246 (267)
T ss_pred EEEEeCCH
Confidence 99999875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=328.49 Aligned_cols=218 Identities=22% Similarity=0.271 Sum_probs=172.6
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISY-------------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEE-------------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46677776554 335799999999999999999999999999999999998542 13689999999
Q ss_pred ccCC-----cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKR-----QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~-----~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
.++. ...+++.++|++|++.+++ .||+||+.+.+..+. .. ....+.++++++.+++........ ...+.
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 153 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKL-NESGY 153 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcc
Confidence 8753 1234567999999998887 499999988754331 11 123345677888887742111111 11235
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec---
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR--- 915 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--- 915 (1065)
.||||||||++|||||+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++ ++...||++++|.+
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~ 231 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEV 231 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999854 799999999986 57788999999985
Q ss_pred -------CcEEEEeCCC
Q 001507 916 -------GGELIYAGPL 925 (1065)
Q Consensus 916 -------gg~~~~~g~~ 925 (1065)
.|++++.|++
T Consensus 232 ~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 232 EGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccceEEEeCCH
Confidence 2678888875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=337.87 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=168.6
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--CeeEEEEEECCccCCc---cc----ccceEEEEcCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ET----FARISGYCEQND 782 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~----~~~~~~~v~q~~ 782 (1065)
...+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.++.. .. +++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 45799999999999999999999999999999999998642 2468999999987632 11 234699999997
Q ss_pred C--CCCCCCHHHHHHHHhhccCCCC---CCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhC
Q 001507 783 I--HSPGLTVLESLLFSAWLRLPSE---IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 857 (1065)
Q Consensus 783 ~--~~~~ltv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~ 857 (1065)
. +.+.+||.+++.+......... ....+..+++.++++.++|.+..+... ..+..|||||||||+|||||+.+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~--~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR--SFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh--CCchhCCHHHHHHHHHHHHHHCC
Confidence 5 5788999999976422110000 111233456889999999975322111 12358999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 858 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 858 p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+||||||||+|||+.++..++++|+++.++ |.|||+||||++ .+.+.+|++++|. +|++++.|+.
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~-~G~ive~g~~ 243 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLY-CGQTVETAPS 243 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 9999999999999999999999999999864 999999999986 5668899999998 5899999975
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=331.20 Aligned_cols=200 Identities=24% Similarity=0.319 Sum_probs=169.8
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeE---EEEEECCccCCc---ccccceEEEEcCCCC-CC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQ---ETFARISGYCEQNDI-HS 785 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~---G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~ 785 (1065)
+.+|+|+||+|++||++||+||||||||||+++|+|..++ .+ |+|.++|.++.. ..+++.+||++|++. .+
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p--~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~ 97 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP--DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 97 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh
Confidence 4699999999999999999999999999999999998763 34 999999988643 234567999999974 56
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
+..||+||+.|....+ ....++..++++++++.+++.+..+..+ +.||||||||++|||||+.+|++|+|||
T Consensus 98 ~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 98 VGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred ccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 7789999998764322 2234445567889999999987766554 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..||++++|. +|++++.|++
T Consensus 170 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G~i~~~g~~ 227 (282)
T PRK13640 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DGKLLAQGSP 227 (282)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999764 899999999986 34 5799999998 5899999875
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=306.28 Aligned_cols=216 Identities=22% Similarity=0.315 Sum_probs=189.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 86 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~ 86 (1065)
.+++.+++ ++.+++|+||.++||++.+++|||||||||.+++|.|++.|+ +|+|.++|.+++.. .+.+|||.|
T Consensus 6 e~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~-~~~rIGyLP 78 (300)
T COG4152 6 EGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQE-IKNRIGYLP 78 (300)
T ss_pred ecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhh-hhhhcccCh
Confidence 34444443 457999999999999999999999999999999999999886 99999999887643 345699999
Q ss_pred cccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccc
Q 001507 87 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 166 (1065)
Q Consensus 87 Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 166 (1065)
.+..+++.+||.|.|.|.+++++... ++....++..|+.+++....
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~ 124 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKK 124 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccc
Confidence 99999999999999999999887532 12234478899999998876
Q ss_pred cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhc
Q 001507 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 246 (1065)
Q Consensus 167 ~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~ 246 (1065)
... ++.||-|.+|++.+..+++.+|++++||||+|||||.+.+.+-+.+.++.. .|+||+..+|.++.+.++|
T Consensus 125 ~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLC 197 (300)
T COG4152 125 TKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELC 197 (300)
T ss_pred cch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHh
Confidence 554 457999999999999999999999999999999999999999999999865 4788888999999999999
Q ss_pred ccEEEecCCcEEEEcCcchHHHHH
Q 001507 247 DDVILLSEGQIVYQGPRVSVLDFF 270 (1065)
Q Consensus 247 D~v~~l~~G~i~~~G~~~~~~~~f 270 (1065)
|++++|++|+.|.+|+..+++..|
T Consensus 198 D~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 198 DRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred hhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999998754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=374.21 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=106.7
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHH---hCCC
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELV---ANPS 859 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~---~~p~ 859 (1065)
.+...||.|+|.++..-.........+..+++ ++++.++|.+. .+... ..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45578999999876542111111123344455 47888898765 45443 579999999999999998 6999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEeCCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 926 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~~ 926 (1065)
+|||||||+|||+.+...+++.|++++++|.|||+++|+++ .+ ..+|++++|. ++|+++..|++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999986 34 8899999995 368999999763
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=318.62 Aligned_cols=194 Identities=45% Similarity=0.746 Sum_probs=161.3
Q ss_pred HHHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceE
Q 001507 6 LRQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~ 82 (1065)
++++++.++.. .++.+|+|+||++++||+++|+||||||||||+++|+|.+.+..+.+|+|.++|.++... ..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i 85 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEI 85 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceE
Confidence 34566555442 456799999999999999999999999999999999999874224599999999887543 234679
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++.+||+||+.++....
T Consensus 86 ~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------------------------------------ 111 (202)
T cd03233 86 IYVSEEDVHFPTLTVRETLDFALRCK------------------------------------------------------ 111 (202)
T ss_pred EEEecccccCCCCcHHHHHhhhhhhc------------------------------------------------------
Confidence 99999999899999999998742210
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
. ++.+..||||||||++|||||+.+|++++|||||+|||+.++..+++.++++.+..+.++|+++||+.+++
T Consensus 112 ---~-----~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 112 ---G-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI 183 (202)
T ss_pred ---c-----ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH
Confidence 1 12234699999999999999999999999999999999999999999999987643456677777888899
Q ss_pred HhhcccEEEecCCcEEEEc
Q 001507 243 YELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G 261 (1065)
.+++|++++|++|++++.|
T Consensus 184 ~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 184 YDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhCCeEEEEECCEEEecC
Confidence 9999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=334.62 Aligned_cols=200 Identities=21% Similarity=0.300 Sum_probs=166.2
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--------ccccceEEEEcCCCCC-
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--------ETFARISGYCEQNDIH- 784 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--------~~~~~~~~~v~q~~~~- 784 (1065)
.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 59999999999999999999999999999999999876 568999999987531 2345679999999742
Q ss_pred CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 785 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+...|++||+.|..... ........+.++++++.+++. +..+... ..||||||||++|||||+.+|++|||
T Consensus 103 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlL 174 (289)
T PRK13645 103 LFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVL 174 (289)
T ss_pred hhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 23469999998864322 122333445678889999984 4555433 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|+ +|++++.|+.
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 235 (289)
T PRK13645 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMH-EGKVISIGSP 235 (289)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999998754 899999999986 5778899999998 5799988874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=328.22 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=170.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. +++..
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 358999999999999999999999999999999999876 568999999987643 234567999999974 67778
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|+.+|+.|..... ....+...+.++++++.+++.+..+... ..||+|||||++|||||+.+|++|||||||+
T Consensus 100 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 100 IVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred cHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998864322 1223344456788999999987666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|. +|++++.|+..
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~-~G~i~~~g~~~ 227 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMN-KGTVYKEGTPT 227 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEE-CCEEEEecCHH
Confidence 99999999999999998764 899999999987 454 499999998 58999998753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.37 Aligned_cols=214 Identities=26% Similarity=0.324 Sum_probs=168.5
Q ss_pred HHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CC
Q 001507 7 RQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PP 79 (1065)
Q Consensus 7 ~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~ 79 (1065)
+++++.+++. ....+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .+
T Consensus 5 ~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 5 KNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred EeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhh
Confidence 3455554322 1136999999999999999999999999999999999998775 999999998875432 24
Q ss_pred ceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHH
Q 001507 80 RTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 157 (1065)
Q Consensus 80 ~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 157 (1065)
+.++|++|++ .+++.+||+||+.+.......... + ...+..+++++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~-~-------------------------------~~~~~~~~~~l 129 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSK-K-------------------------------EARKEAVLLLL 129 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcH-H-------------------------------HHHHHHHHHHH
Confidence 5799999998 456789999999876432211000 0 00011135678
Q ss_pred HHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 001507 158 KILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 158 ~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~ 236 (1065)
+.++|. +..+.. +..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++
T Consensus 130 ~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~s 203 (228)
T cd03257 130 VGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE-LGLTLLFIT 203 (228)
T ss_pred HHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 888985 444544 3469999999999999999999999999999999999999999999998753 256777799
Q ss_pred CCchHHHhhcccEEEecCCcEEEEc
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 237 ~~~~~~~~~~D~v~~l~~G~i~~~G 261 (1065)
|+.+++..+||++++|++|+++..|
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 204 HDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred CCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=327.61 Aligned_cols=211 Identities=26% Similarity=0.333 Sum_probs=172.2
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~ 82 (1065)
+++++.++ +.++|+|+||++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.+
T Consensus 4 ~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 4 SNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred EeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCe
Confidence 34555443 246999999999999999999999999999999999999875 999999998765432 13569
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC-
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG- 161 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg- 161 (1065)
+|++|++.+++.+|++||+.++....... ....++++++.++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~ 120 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPV 120 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHh
Confidence 99999999899899999998764321100 0012455666665
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+.+..++. ++.||||||||++|||||+.+|++++|||||+|||+.++.++.+.|+++++. ++++|++++|+.++
T Consensus 121 l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~ 194 (230)
T TIGR03410 121 LKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDF 194 (230)
T ss_pred HHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHH
Confidence 45444444 4569999999999999999999999999999999999999999999998653 35677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+..+||++++|++|++++.|+.+++
T Consensus 195 ~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 195 ARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999988765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=328.51 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=170.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 86 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~ 86 (1065)
+++++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.. .++.++|++
T Consensus 16 ~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~ 87 (257)
T PRK11247 16 NAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMF 87 (257)
T ss_pred EEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEe
Confidence 44444443 246999999999999999999999999999999999998775 9999999976532 345799999
Q ss_pred cccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccc
Q 001507 87 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 166 (1065)
Q Consensus 87 Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 166 (1065)
|++.+++.+||+||+.++.. .. ....++++++.+||.+..
T Consensus 88 q~~~l~~~~tv~enl~~~~~-----~~-----------------------------------~~~~~~~~l~~~gl~~~~ 127 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLK-----GQ-----------------------------------WRDAALQALAAVGLADRA 127 (257)
T ss_pred cCccCCCCCcHHHHHHhccc-----ch-----------------------------------HHHHHHHHHHHcCChhHh
Confidence 99988888999999987421 00 011267788999998766
Q ss_pred cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhc
Q 001507 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 246 (1065)
Q Consensus 167 ~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~ 246 (1065)
+..+ ..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+. .+.+|++++|+.+++..+|
T Consensus 128 ~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tviivsHd~~~~~~~~ 201 (257)
T PRK11247 128 NEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ-HGFTVLLVTHDVSEAVAMA 201 (257)
T ss_pred cCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhC
Confidence 5544 469999999999999999999999999999999999999999999988654 3566777999999999999
Q ss_pred ccEEEecCCcEEEEcCcc
Q 001507 247 DDVILLSEGQIVYQGPRV 264 (1065)
Q Consensus 247 D~v~~l~~G~i~~~G~~~ 264 (1065)
|+|++|++|++++.|+.+
T Consensus 202 d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 202 DRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEEECCEEEeecccc
Confidence 999999999999988754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=332.23 Aligned_cols=200 Identities=24% Similarity=0.318 Sum_probs=169.8
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCC-CCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 787 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~-~~~~ 787 (1065)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 569999999999999999999999999999999999877 568999999987643 234677999999974 2335
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
.||.|++.|..... .....+..++++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|||||||
T Consensus 101 ~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 101 TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 69999999875432 1233444567889999999988777654 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|+ +|++++.|++
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~-~G~i~~~g~~ 228 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMD-SGKVVMEGTP 228 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999764 999999999987 344 499999998 4899999875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=325.86 Aligned_cols=208 Identities=21% Similarity=0.299 Sum_probs=168.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--CC-eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+|++|++||++||+||||||||||+++|+|..+ +. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 4579999999999999999999999999999999999864 21 258999999987632 234667999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++.+|++||+.+...... ........++++++++.+++......... ..+..||||||||++|||+|+.+|++|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred CCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999987543221 11223334567888999988542111111 12467999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|. +|+++..|+.
T Consensus 173 DEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14256 173 DEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGDLVECGET 231 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999975 689999999986 5678899999998 5899998875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=329.73 Aligned_cols=202 Identities=21% Similarity=0.307 Sum_probs=168.8
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC--CCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI--HSPG 787 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~--~~~~ 787 (1065)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. +++.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 469999999999999999999999999999999999877 568999999987642 123456999999875 5678
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+|+.|++.+....+. ........+.++++++.+++. +..+.. +..||||||||++|||+|+.+|+|||||||
T Consensus 104 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 104 QRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred hhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 899999987654331 122333445678899999994 444443 257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|++++++ |.|||++||+++ ++...||++++|. +|+++..|+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 234 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEVVERGST 234 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEecCCH
Confidence 9999999999999999999764 899999999986 5667899999998 5899988864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=322.66 Aligned_cols=205 Identities=30% Similarity=0.425 Sum_probs=165.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++. .+.+|+|+||++++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .++.++
T Consensus 3 ~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~ 78 (211)
T cd03225 3 KNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVG 78 (211)
T ss_pred eeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhce
Confidence 3455544321 246999999999999999999999999999999999998775 999999998765332 235689
Q ss_pred EEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 84 YVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 84 yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|++|++. .++.+||+||+.++....+.. . ......++++++.+||
T Consensus 79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l 124 (211)
T cd03225 79 LVFQNPDDQFFGPTVEEEVAFGLENLGLP--E--------------------------------EEIEERVEEALELVGL 124 (211)
T ss_pred EEecChhhhcCCCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCc
Confidence 9999974 366789999998754321100 0 0011236778899999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +++|++++|+.+++
T Consensus 125 ~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~ 197 (211)
T cd03225 125 EGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLL 197 (211)
T ss_pred HhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH
Confidence 87666544 469999999999999999999999999999999999999999999998753 56777899999999
Q ss_pred HhhcccEEEecCCc
Q 001507 243 YELFDDVILLSEGQ 256 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~ 256 (1065)
..+||++++|++|+
T Consensus 198 ~~~~d~i~~l~~G~ 211 (211)
T cd03225 198 LELADRVIVLEDGK 211 (211)
T ss_pred HHhCCEEEEEeCCC
Confidence 99999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=332.01 Aligned_cols=208 Identities=23% Similarity=0.305 Sum_probs=171.8
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCceEEEEcccc--
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD-- 89 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~~~yv~Q~~-- 89 (1065)
++.+|+|+||++++||+++|+|||||||||||++|+|.+.|. +|+|.++|.++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 357999999999999999999999999999999999998775 999999998775432 235699999996
Q ss_pred ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc-ccccc
Q 001507 90 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADT 168 (1065)
Q Consensus 90 ~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t 168 (1065)
.+++.+||+||+.+....... .. .......++++++.+||. +..+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~---~~------------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTS---LD------------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---CC------------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 456789999999775321100 00 001123477889999996 45554
Q ss_pred cccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhccc
Q 001507 169 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248 (1065)
Q Consensus 169 ~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~ 248 (1065)
. +..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+.+..++|+
T Consensus 147 ~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 L-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred C-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcE
Confidence 4 4569999999999999999999999999999999999999999999998753 356778899999999999999
Q ss_pred EEEecCCcEEEEcCcchHH
Q 001507 249 VILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 249 v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999987764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=336.64 Aligned_cols=217 Identities=25% Similarity=0.333 Sum_probs=177.1
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-----CCCc
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPR 80 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-----~~~~ 80 (1065)
++++++.++. +..+|+|+||+|++||+++|+||||||||||+++|+|.++|. +|+|.++|.++... ..++
T Consensus 8 ~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 8 VEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred EEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHh
Confidence 4556665532 246999999999999999999999999999999999998775 99999999886311 1235
Q ss_pred eEEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 81 TSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 81 ~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
.++|++|++. .+...||+||+.++....+.. . ......++++++.
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~--------------------~--------------~~~~~~~~~~l~~ 128 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP--------------------E--------------DEVRKRVDNALKR 128 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCC--------------------H--------------HHHHHHHHHHHHH
Confidence 7999999973 344579999998854321100 0 0011247888999
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||.+..++.+ +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+.
T Consensus 129 ~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~ 202 (283)
T PRK13636 129 TGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDI 202 (283)
T ss_pred CCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCH
Confidence 99987766554 569999999999999999999999999999999999999999999998763 356777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++..+||++++|++|++++.|+++++.
T Consensus 203 ~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 203 DIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999988765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=375.11 Aligned_cols=207 Identities=25% Similarity=0.371 Sum_probs=165.9
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEEEEccccccCCCC
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 95 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~l 95 (1065)
.++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||.++.+.. .++.++||+|++++|..
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 46999999999999999999999999999999999999 75 899999999887653 35789999999998875
Q ss_pred CHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccc
Q 001507 96 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 175 (1065)
Q Consensus 96 Tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 175 (1065)
||+|||.++.. ....+.+.++++. + ..++.++ .|++..||.||+++
T Consensus 438 TI~eNI~~g~~----~~~~eei~~al~~------------------a---------~l~~~i~--~lp~G~dT~vge~G- 483 (588)
T PRK11174 438 TLRDNVLLGNP----DASDEQLQQALEN------------------A---------WVSEFLP--LLPQGLDTPIGDQA- 483 (588)
T ss_pred CHHHHhhcCCC----CCCHHHHHHHHHH------------------h---------CHHHHHH--hcccccccccccCC-
Confidence 99999988521 0000111111110 0 0122222 35677899999875
Q ss_pred ccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCC
Q 001507 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 255 (1065)
Q Consensus 176 ~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G 255 (1065)
.+||||||||++||||++++|+||+||||||+||++++..+.+.|+++.+ ++|+++++|..+.+ ..||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~---~~TvIiItHrl~~i-~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTLMVTHQLEDL-AQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC---CCEEEEEecChHHH-HhCCEEEEEeCC
Confidence 47999999999999999999999999999999999999999999988742 35555677777554 569999999999
Q ss_pred cEEEEcCcchHHH
Q 001507 256 QIVYQGPRVSVLD 268 (1065)
Q Consensus 256 ~i~~~G~~~~~~~ 268 (1065)
++++.|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=328.33 Aligned_cols=212 Identities=26% Similarity=0.386 Sum_probs=172.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~ 82 (1065)
+++++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.+
T Consensus 9 ~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 9 DKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCE
Confidence 44555443 246999999999999999999999999999999999998775 999999998875432 23569
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh-C
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-G 161 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-g 161 (1065)
+|++|++.+++.+||+||+.++..... .+ ..+..++++++.+ +
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--------------------------------~~~~~~~~~l~~~~~ 126 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAE----RD--------------------------------QFQERIKWVYELFPR 126 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccC----hh--------------------------------HHHHHHHHHHHHHHH
Confidence 999999988998999999987532110 00 0011245566666 4
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+.+..++. +..||||||||++||||++.+|+|++|||||+|||+.++..+.+.|+++++. +++|++++|+.++
T Consensus 127 l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~ 199 (237)
T PRK11614 127 LHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNANQ 199 (237)
T ss_pred HHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHH
Confidence 65544443 3569999999999999999999999999999999999999999999988642 5667778999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+.++||++++|++|++++.|+++++.
T Consensus 200 ~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 200 ALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999987763
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=321.90 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=165.9
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC--eeEEEEEECCccCCcccc-cceEEEEcCCCC--CCCCCC
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG--IIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPGLT 789 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~~~v~q~~~--~~~~lt 789 (1065)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987620 168999999987644322 357999999974 556789
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc---cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
+.|++.+....... ......++++++++.+++.+ ..+.. +..|||||||||+|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999775432211 12334456889999999973 33433 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|. +|+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMD-DGRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999764 899999999986 5777899999998 5899988864
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=315.80 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=172.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC-C--CeeEEEEEECCccCC---cc----cccceEEEEcCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-G--GIIEGDIYISGYPKR---QE----TFARISGYCEQN 781 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~-~--~~~~G~i~i~g~~~~---~~----~~~~~~~~v~q~ 781 (1065)
...+++||||++++||++||+|.|||||||+.++|.|..+ + ...+|+|.++|.++. .+ -+.+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999875 2 346799999998652 22 134579999999
Q ss_pred C--CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 782 D--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 782 ~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
+ .+.|.+||.+.+.-......... ..++..+++.++++.+++.+-....... +.+|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y--PhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY--PHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC--CcccCCcHHHHHHHHHHHhCCCC
Confidence 6 46788999988765544322110 2445566788889999987643322222 36899999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+||.||||++||...+.+|+++|+++.+ .|.|+|+||||+. -+.+.||||+||. .|++++.|+..
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE-CcEEEEeCCHH
Confidence 9999999999999999999999999986 5999999999997 4889999999998 58999999863
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=329.99 Aligned_cols=223 Identities=24% Similarity=0.319 Sum_probs=176.1
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC---CCCc
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF---VPPR 80 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~---~~~~ 80 (1065)
++++++.+++ ..+|+|+||++++||+++|+||||||||||+++|+|.+.+. .+.+|+|.++|.++... ..++
T Consensus 6 ~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 6 IRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 4556655532 46999999999999999999999999999999999998642 13599999999877542 2245
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.++......... . .+..+.++++++.+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~------------------~--------------~~~~~~~~~~l~~~ 130 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKS------------------K--------------KELQERVRWALEKA 130 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCC------------------H--------------HHHHHHHHHHHHHc
Confidence 799999999888899999999886432110000 0 00122367788899
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+...... +..+.+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+
T Consensus 131 ~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~ 206 (250)
T PRK14247 131 QLWDEVKDRL-DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQ 206 (250)
T ss_pred CCCcchhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHH
Confidence 9864211111 233457999999999999999999999999999999999999999999998742 467778999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++.++||++++|++|++++.|+++++.
T Consensus 207 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 207 QAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999887763
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=336.54 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=177.2
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++. ...+|+|+||++++||+++|+|+||||||||+++|+|.+.|+ +|+|.++|.++.... .++.+
T Consensus 6 ~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 6 TRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred EEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhhe
Confidence 4456665532 235999999999999999999999999999999999998875 999999998765422 23568
Q ss_pred EEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
+||+|++. .+...||+||+.+.....+.. .......++++++.+|
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~ 126 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLG 126 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCC
Confidence 99999973 344679999998754321100 0001224778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .++||++++|+.++
T Consensus 127 l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~ 200 (277)
T PRK13652 127 LEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDL 200 (277)
T ss_pred ChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 987776655 469999999999999999999999999999999999999999999998753 35677889999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+.+.||++++|++|++++.|+++++.
T Consensus 201 ~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 201 VPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999999999999999999988774
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=322.29 Aligned_cols=202 Identities=26% Similarity=0.309 Sum_probs=167.0
Q ss_pred ccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEccccccCCCCCHHHHH
Q 001507 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 101 (1065)
Q Consensus 22 L~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTv~e~l 101 (1065)
|+|+||++++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999998775 9999999988754322 348999999989989999999
Q ss_pred HHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCchh
Q 001507 102 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181 (1065)
Q Consensus 102 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 181 (1065)
.++....... .+ .......++++++.+||++..++.+ ..||||
T Consensus 76 ~~~~~~~~~~--~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--LS------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccC--CC------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 8753210000 00 0001223678899999987766654 469999
Q ss_pred hhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEc
Q 001507 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 182 qkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G 261 (1065)
||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ .+.+|++++|+.+++.++||++++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE-HRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999988654 3567777999999999999999999999999988
Q ss_pred CcchH
Q 001507 262 PRVSV 266 (1065)
Q Consensus 262 ~~~~~ 266 (1065)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=322.91 Aligned_cols=196 Identities=24% Similarity=0.313 Sum_probs=166.6
Q ss_pred eeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc-cccceEEEEcCCCCCCCCCCHHHHHHH
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLF 796 (1065)
Q Consensus 718 ~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ltv~e~l~~ 796 (1065)
|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999876 5689999999876431 224579999999999999999999987
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHH
Q 001507 797 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876 (1065)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~ 876 (1065)
...... .. .+...++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+|||+.++.
T Consensus 95 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 532110 11 1233556889999999987776654 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 877 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 877 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
.+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~g~i~~~g~~ 214 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVA-DGRIAWDGPT 214 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999998754 899999999986 5677899999998 5899998875
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=331.30 Aligned_cols=215 Identities=22% Similarity=0.270 Sum_probs=175.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC---------
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--------- 76 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--------- 76 (1065)
++++++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|.++|+ +|+|.++|.++...
T Consensus 8 ~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 8 VIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred EeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEccccccccccccc
Confidence 345555553 346999999999999999999999999999999999998765 89999999876421
Q ss_pred -------CCCceEEEEccccccCCCCCHHHHHHHHhh-ccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCc
Q 001507 77 -------VPPRTSAYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQK 148 (1065)
Q Consensus 77 -------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1065)
..++.++|++|++.+++.+||+||+.++.. .... .. ..
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~---~~-------------------------------~~ 127 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL---SK-------------------------------QE 127 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCC---CH-------------------------------HH
Confidence 123579999999998999999999987432 1100 00 00
Q ss_pred chhHHHHHHHHhCCcccc-cccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcC
Q 001507 149 TSLVVEYIMKILGLDTCA-DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 227 (1065)
Q Consensus 149 ~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~ 227 (1065)
.+..+.++++.+||.+.. +. .+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 128 ~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-- 200 (257)
T PRK10619 128 ARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-- 200 (257)
T ss_pred HHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--
Confidence 123467889999997643 43 3457999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 228 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 228 ~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+.+|++++|+.+++..+||+|++|++|++++.|+++++.
T Consensus 201 ~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 201 EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 2567777999999999999999999999999999887653
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=326.86 Aligned_cols=216 Identities=23% Similarity=0.360 Sum_probs=174.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++. ..+++|+||+|++||+++|+|+||||||||+++|+|.+.|.+ ..+|+|.++|.++... ..+
T Consensus 5 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 5 ENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 345554432 359999999999999999999999999999999999987531 2389999999887532 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.+....++... . ......++.+++.
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~ 127 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKD-K--------------------------------KELDEIVEESLKK 127 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCC-H--------------------------------HHHHHHHHHHHHH
Confidence 57999999998888 999999988643321000 0 0011236788999
Q ss_pred hCCc----ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 160 LGLD----TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 160 lgL~----~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
+||. +..++. ++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+++
T Consensus 128 ~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiiv 199 (247)
T TIGR00972 128 AALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIV 199 (247)
T ss_pred cCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEE
Confidence 9997 444443 456999999999999999999999999999999999999999999998864 3 677779
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+|+.+++..++|++++|++|++++.|+++++.
T Consensus 200 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 200 THNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred ecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999887663
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=322.94 Aligned_cols=209 Identities=27% Similarity=0.404 Sum_probs=165.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 86 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~ 86 (1065)
+++++.+++ ..+|+|+|+++++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++. ..++.++|++
T Consensus 3 ~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~ 74 (213)
T cd03235 3 EDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVP 74 (213)
T ss_pred ccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEec
Confidence 345555432 46999999999999999999999999999999999998775 999999997654 2345799999
Q ss_pred cccccC--CCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc
Q 001507 87 QQDWQV--AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 87 Q~~~~~--~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 164 (1065)
|++.+. ..+||+||+.++...... .+.. .. ...+..++++++.+||++
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~--------------~~--------------~~~~~~~~~~l~~~~l~~ 124 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKG--LFRR--------------LS--------------KADKAKVDEALERVGLSE 124 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccc--cccC--------------CC--------------HHHHHHHHHHHHHcCCHH
Confidence 998653 347999999875321100 0000 00 001224778899999987
Q ss_pred cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHh
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~ 244 (1065)
..++.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++++++++|+.+++.+
T Consensus 125 ~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 125 LADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLE 197 (213)
T ss_pred HHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHH
Confidence 666554 46999999999999999999999999999999999999999999999865 35677779999999999
Q ss_pred hcccEEEecCCcEEEEc
Q 001507 245 LFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 245 ~~D~v~~l~~G~i~~~G 261 (1065)
+||++++|++| +++.|
T Consensus 198 ~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 198 YFDRVLLLNRT-VVASG 213 (213)
T ss_pred hcCEEEEEcCc-EeecC
Confidence 99999999876 65554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.48 Aligned_cols=215 Identities=23% Similarity=0.303 Sum_probs=176.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC----------
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---------- 76 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~---------- 76 (1065)
+++++.+++ ..+|+|+||+|++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++...
T Consensus 4 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 4 SDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred EEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccccccccccccc
Confidence 345555532 46999999999999999999999999999999999998775 99999999876432
Q ss_pred ------CCCceEEEEccccccCCCCCHHHHHHHHhhc-cCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcc
Q 001507 77 ------VPPRTSAYVSQQDWQVAEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 149 (1065)
Q Consensus 77 ------~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (1065)
..++.++|++|++.+++..||.||+.++... .+. . . ...
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~----~----------------~--------------~~~ 123 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM----A----------------R--------------AEA 123 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCC----C----------------H--------------HHH
Confidence 1245799999999989999999999875321 000 0 0 001
Q ss_pred hhHHHHHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCC
Q 001507 150 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229 (1065)
Q Consensus 150 ~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~ 229 (1065)
...++++++.+||.+..+.. +..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+
T Consensus 124 ~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~ 197 (252)
T TIGR03005 124 EKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HD 197 (252)
T ss_pred HHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cC
Confidence 12367889999998766554 3569999999999999999999999999999999999999999999988653 35
Q ss_pred EEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 230 ~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++++++|+.+++..++|++++|++|++++.|+.+++.
T Consensus 198 ~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 198 LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred cEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 77888999999999999999999999999999877653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=325.19 Aligned_cols=203 Identities=23% Similarity=0.271 Sum_probs=167.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ...++.+||++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 457999999999999999999999999999999999976421 258999999987632 133567999999998
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
+++ +|++||+.|....... .......++++++++.+++.+ ..+. ....||+|||||++|||+|+.+|+
T Consensus 96 ~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 167 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPD 167 (251)
T ss_pred cCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 887 8999999886543211 122333456778899988742 2222 235899999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 168 llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 230 (251)
T PRK14270 168 VILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL-MGDLIEFNKT 230 (251)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE-CCeEEEeCCH
Confidence 9999999999999999999999999875 689999999986 5778899999998 5899998875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.83 Aligned_cols=221 Identities=23% Similarity=0.282 Sum_probs=175.3
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+.++|+++.+.. +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 4667777765521 234699999999999999999999999999999999997642 24589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
.++.. ..+++.++||||++.++. .|++||+.|+..... ....+...+.++++++.+++.+..+..++. ...
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98742 235678999999998875 799999998643221 111222234467788888875322222222 246
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
.||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|. +|+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QGW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999865 799999999986 4667799999998 589
Q ss_pred EEEeCCC
Q 001507 919 LIYAGPL 925 (1065)
Q Consensus 919 ~~~~g~~ 925 (1065)
++..|++
T Consensus 302 i~e~g~~ 308 (329)
T PRK14257 302 IEEAGET 308 (329)
T ss_pred EEEeCCH
Confidence 9999976
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=358.59 Aligned_cols=208 Identities=26% Similarity=0.367 Sum_probs=175.5
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++
T Consensus 15 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK10762 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP 92 (501)
T ss_pred CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC
Confidence 34679999999999999999999999999999999999876 4689999999876321 12456999999998999
Q ss_pred CCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 787 GLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
.+||+||+.|+...+.. ........+++++++++.+++.+..+..+ ..|||||||||+|||||+.+|++|||||
T Consensus 93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999886432211 11122334456789999999987776654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
||+|||+.++..+++.|++++++|.|||++|||++ ++...||++++|. +|+++..|+..+
T Consensus 168 Pt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 227 (501)
T PRK10762 168 PTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR-DGQFIAEREVAD 227 (501)
T ss_pred CcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEecCcCc
Confidence 99999999999999999999877999999999986 5778899999998 589999988754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=324.69 Aligned_cols=208 Identities=21% Similarity=0.298 Sum_probs=167.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|...+ . +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 45799999999999999999999999999999999998541 1 358999999987532 134567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++. |++||+.+....+.. .......++.++++++.+++.+....... ..+..||||||||++|||+|+.+|++|||
T Consensus 97 ~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llll 173 (251)
T PRK14244 97 PFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLM 173 (251)
T ss_pred cccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 999999886433211 11223334567888999998652111111 12357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++. +|+|||++||+++ .+.+.+|++++|++ |++++.|+.
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 174 DEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999985 4899999999986 56778999999985 799988874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=328.51 Aligned_cols=212 Identities=24% Similarity=0.341 Sum_probs=173.7
Q ss_pred HHHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC---CCCce
Q 001507 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRT 81 (1065)
Q Consensus 5 ~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~---~~~~~ 81 (1065)
.++++++.+++ ..+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.
T Consensus 5 ~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~ 78 (241)
T PRK14250 5 EFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRK 78 (241)
T ss_pred EEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhc
Confidence 34566655532 46999999999999999999999999999999999998775 99999999876432 22457
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++ .||+||+.++..... .....++++++.+|
T Consensus 79 i~~~~q~~~~~~-~tv~e~l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~ 119 (241)
T PRK14250 79 IGMVFQQPHLFE-GTVKDNIEYGPMLKG--------------------------------------EKNVDVEYYLSIVG 119 (241)
T ss_pred EEEEecCchhch-hhHHHHHhcchhhcC--------------------------------------cHHHHHHHHHHHcC
Confidence 999999988776 699999976432110 00113667888999
Q ss_pred Cc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 162 LD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 162 L~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
|+ +..++. +..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+
T Consensus 120 l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tii~~sH~~~ 193 (241)
T PRK14250 120 LNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK-MNLTVIWITHNME 193 (241)
T ss_pred CCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHH
Confidence 96 344443 4569999999999999999999999999999999999999999999988653 2567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++.++||+|++|++|+++..|++.++.
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 194 QAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999999999887653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=298.16 Aligned_cols=214 Identities=24% Similarity=0.365 Sum_probs=186.1
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcC
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQ 780 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q 780 (1065)
++.++.++++.+|+++|..|++|.+++|+|||||||||||.+++++.+ ..+|+|+++|.++.. ..+.+.++..-|
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 445556788999999999999999999999999999999999999876 579999999998743 456777888999
Q ss_pred CCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 781 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 781 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
+......+||+|-+.|+..-.. .....++.+..++++++.++|.++.|+.. .+||||||||.-||+.|+++.+.
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred hchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcE
Confidence 9888889999999999732211 22234566778999999999999999876 47999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
++||||.++||......+|+.|++++++ |+|||++.||.+. ...+.|.|+-|+ +|+++..|++.+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK-~G~vv~~G~~~e 222 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALK-NGKVVKQGSPDE 222 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeec-CCEEEecCCHHH
Confidence 9999999999999999999999999876 9999999999885 456789999998 589999999853
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=338.36 Aligned_cols=222 Identities=21% Similarity=0.290 Sum_probs=176.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.+.. ....+|+|+||+|++||+++|+|||||||||||++|+|...+. .+.+|+|.++|.++... ..+
T Consensus 84 ~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr 162 (329)
T PRK14257 84 RNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELR 162 (329)
T ss_pred EeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhh
Confidence 344444432 2246999999999999999999999999999999999987531 13489999999987532 235
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++||||+++++. .||+||+.|+....+... + +..++.++.+++.
T Consensus 163 ~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~ 208 (329)
T PRK14257 163 TRIGMVFQKPTPFE-MSIFDNVAYGPRNNGIND--R-------------------------------KILEKIVEKSLKS 208 (329)
T ss_pred ccEEEEecCCccCC-CcHHHHHHhHHHhcCCCh--H-------------------------------HHHHHHHHHHHHH
Confidence 67999999999775 799999998643211000 0 0001225667788
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
++|.+..++.+++ ...+|||||||||+||||++.+|+||+|||||+|||+.+...+.+.|+++.+ +.||++++|+.
T Consensus 209 ~~L~~~l~~~~~~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l 284 (329)
T PRK14257 209 AALWDEVKDDLDK-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSM 284 (329)
T ss_pred cCCcchhhhhhhC-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 8876554555654 4568999999999999999999999999999999999999999999998753 36788899999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++.++||+|++|++|++++.|++.++.
T Consensus 285 ~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 285 AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999998874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=329.66 Aligned_cols=215 Identities=29% Similarity=0.470 Sum_probs=175.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++ ..+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++
T Consensus 6 ~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 6 RNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheE
Confidence 445555432 46999999999999999999999999999999999998775 999999998764322 235689
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
|++|++.+++.+||+||+.++...... .. +..+..++++++.+||.
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~--~~--------------------------------~~~~~~~~~~l~~~~l~ 125 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGL--SR--------------------------------AEDDALVAAALAQVDLA 125 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCC--Cc--------------------------------HHHHHHHHHHHHHcCCH
Confidence 999998877889999999875321100 00 00112367889999998
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHh------cCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
+..++.+ ..|||||||||+|||||+ .+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++|
T Consensus 126 ~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH 199 (258)
T PRK13548 126 HLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE-RGLAVIVVLH 199 (258)
T ss_pred hHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 7666655 469999999999999999 599999999999999999999999999998633 3567777999
Q ss_pred CchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+.+++..+||+|++|++|++++.|+++++.
T Consensus 200 ~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 200 DLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999876653
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=327.46 Aligned_cols=220 Identities=23% Similarity=0.330 Sum_probs=176.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~ 82 (1065)
+++++.+++ +.+|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.+
T Consensus 6 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 6 EGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCe
Confidence 445554432 46999999999999999999999999999999999998775 999999998765432 13469
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++.+||+||+.++..... ..+..... . .....+..++++++.+||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~-----------~-------------~~~~~~~~~~~~l~~~~l 133 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDK--SVFASLFF-----------R-------------LSAEEKDRIEEVLETIGL 133 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhccc--cccccccc-----------c-------------cHHHHHHHHHHHHHHcCC
Confidence 999999999999999999988543110 00000000 0 000112347889999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..++.+ +.|||||||||+||||++.+|++++|||||+|||+.++..+++.|+++++ +.+|++++|+.+++
T Consensus 134 ~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~---~~tii~~sH~~~~~ 205 (242)
T TIGR03411 134 ADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG---KHSVVVVEHDMEFV 205 (242)
T ss_pred chhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc---CCEEEEEECCHHHH
Confidence 87666554 46999999999999999999999999999999999999999999999854 35777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
.++||++++|++|++++.|+.+++
T Consensus 206 ~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 206 RSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999987665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=333.80 Aligned_cols=218 Identities=22% Similarity=0.306 Sum_probs=177.3
Q ss_pred HHHhhhhcCCcc---ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC----CC
Q 001507 6 LRQLRIYRGNRS---KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~---~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~----~~ 78 (1065)
++++++.++... .+.+|+|+||+|++||+++|+|+||||||||+++|+|.+.++ +|+|.++|.++... ..
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHH
Confidence 456666654321 356999999999999999999999999999999999999875 99999999887542 12
Q ss_pred CceEEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHH
Q 001507 79 PRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 157 (1065)
Q Consensus 79 ~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 157 (1065)
++.++|++|++. .+...||.||+.|+....+... .+.+..+++++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l 129 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESL 129 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHH
Confidence 467999999974 2334699999988643221100 00123478899
Q ss_pred HHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 158 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 158 ~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
+.+||++..++.+ ..||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|
T Consensus 130 ~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH 203 (280)
T PRK13633 130 KKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITH 203 (280)
T ss_pred HHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 9999988777665 469999999999999999999999999999999999999999999998653 3567777899
Q ss_pred CchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+.+++.. ||++++|++|++++.|+++++.
T Consensus 204 ~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 204 YMEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred ChHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999876 9999999999999999988775
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=325.83 Aligned_cols=218 Identities=22% Similarity=0.289 Sum_probs=173.1
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEECCc
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGY 764 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~--~-~~~G~i~i~g~ 764 (1065)
+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ . +.+|+|.++|.
T Consensus 13 l~i~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 13 YQINGMNLWY-------------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS 79 (259)
T ss_pred EEEeeEEEEE-------------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE
Confidence 5666766543 345799999999999999999999999999999999997641 1 24899999998
Q ss_pred cCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCC
Q 001507 765 PKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839 (1065)
Q Consensus 765 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 839 (1065)
++.. ..+++.+||++|++.+++. |++||+.|....+.. ....+..++++++++.+++.+...... .....+
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~ 155 (259)
T PRK14274 80 NILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALS 155 (259)
T ss_pred EccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhh-hCCccc
Confidence 7632 2345679999999888875 999999886433211 122333456778888888853211111 112358
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001507 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 919 (1065)
Q Consensus 840 lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 919 (1065)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.+|++++|+ +|++
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~i 232 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY-MGEL 232 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999864 799999999986 5778899999998 5899
Q ss_pred EEeCCC
Q 001507 920 IYAGPL 925 (1065)
Q Consensus 920 ~~~g~~ 925 (1065)
+..|++
T Consensus 233 ~~~g~~ 238 (259)
T PRK14274 233 VECNDT 238 (259)
T ss_pred EEECCH
Confidence 999875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=334.16 Aligned_cols=217 Identities=20% Similarity=0.275 Sum_probs=173.5
Q ss_pred HHHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------
Q 001507 6 LRQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF------- 76 (1065)
Q Consensus 6 ~~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~------- 76 (1065)
++++++.+++.. ..++|+|+||+|++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++...
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHH
Confidence 345555554321 246999999999999999999999999999999999998775 99999999876532
Q ss_pred CCCceEEEEcccc--ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHH
Q 001507 77 VPPRTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154 (1065)
Q Consensus 77 ~~~~~~~yv~Q~~--~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (1065)
..++.++|++|++ .+++ .||+||+.|.....+.. . .+....++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~--~--------------------------------~~~~~~~~ 126 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVS--Q--------------------------------EEAEALAR 126 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHH
Confidence 1235699999996 3444 69999998764321100 0 00112367
Q ss_pred HHHHHhCCcc-cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEE
Q 001507 155 YIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233 (1065)
Q Consensus 155 ~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii 233 (1065)
++++.+||.. ..++. +..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .+++|+
T Consensus 127 ~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii 199 (280)
T PRK13649 127 EKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ--SGMTIV 199 (280)
T ss_pred HHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--CCCEEE
Confidence 7888999963 44444 456999999999999999999999999999999999999999999998864 256777
Q ss_pred EecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 234 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 234 ~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++|+.+++..++|++++|++|++++.|+++++.
T Consensus 200 ivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 7999999999999999999999999999987763
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=324.89 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=165.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||++||+||||||||||+++|+|..+ + .+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 4579999999999999999999999999999999999732 2 1247999999987632 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|++||+.+....+. . .......+.++++++.+++.+...... ...+..||||||||++|||||+.+|++|||
T Consensus 97 ~~~-~tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 172 (252)
T PRK14239 97 PFP-MSIYENVVYGLRLKG-I-KDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILL 172 (252)
T ss_pred cCc-CcHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 877 899999988643321 1 112233456778888888743111111 112357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 231 (252)
T PRK14239 173 DEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL-DGDLIEYNDT 231 (252)
T ss_pred cCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999864 699999999986 5778899999998 5799998875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=322.53 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=168.7
Q ss_pred cccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC-CceeEEEEECCccCCCCCC-CceEEEEccccc--cCCCCC
Q 001507 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEMT 96 (1065)
Q Consensus 21 iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~-~~~~G~i~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lT 96 (1065)
+|+|+|+++++|++++|+||||||||||+++|+|.++|. .+.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998761 0139999999988754332 257999999984 456789
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcc---cccccccCc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGDE 173 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~t~vg~~ 173 (1065)
++||+.+.....+... .....+++++++.+||.+ ..++
T Consensus 81 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 121 (230)
T TIGR02770 81 MGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPEEVLKK----- 121 (230)
T ss_pred HHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchHHHHhC-----
Confidence 9999977543211000 001223788899999973 3343
Q ss_pred ccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEec
Q 001507 174 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 253 (1065)
Q Consensus 174 ~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~ 253 (1065)
.+..|||||||||+||||++.+|+|++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..++|++++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34569999999999999999999999999999999999999999999988653 35677779999999999999999999
Q ss_pred CCcEEEEcCcchHH
Q 001507 254 EGQIVYQGPRVSVL 267 (1065)
Q Consensus 254 ~G~i~~~G~~~~~~ 267 (1065)
+|+++..|+++++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999887764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=323.65 Aligned_cols=211 Identities=25% Similarity=0.365 Sum_probs=169.6
Q ss_pred HHHhhhhcCCccc-eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC------
Q 001507 6 LRQLRIYRGNRSK-LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------ 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~-~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~------ 78 (1065)
++++++.+++... ..+|+|+||++++|++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.....
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHH
Confidence 3455555443221 35999999999999999999999999999999999998775 9999999987754321
Q ss_pred -CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHH
Q 001507 79 -PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 157 (1065)
Q Consensus 79 -~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 157 (1065)
++.++|++|++.+++.+||.||+.+....+... . ......+++++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~l 131 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGES---S-------------------------------RQSRNGAKALL 131 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCC---H-------------------------------HHHHHHHHHHH
Confidence 246999999998889899999998754321100 0 00123477889
Q ss_pred HHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 158 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 158 ~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
+.+||.+..+..+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|
T Consensus 132 ~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH 205 (228)
T PRK10584 132 EQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE-HGTTLILVTH 205 (228)
T ss_pred HHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 9999987666554 469999999999999999999999999999999999999999999998653 3566777889
Q ss_pred CchHHHhhcccEEEecCCcEEEE
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQ 260 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~ 260 (1065)
+.+++. .+|++++|++|++++.
T Consensus 206 ~~~~~~-~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 206 DLQLAA-RCDRRLRLVNGQLQEE 227 (228)
T ss_pred CHHHHH-hCCEEEEEECCEEEec
Confidence 988874 5999999999998753
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=321.98 Aligned_cols=206 Identities=21% Similarity=0.286 Sum_probs=168.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~ 80 (1065)
+++++.+. ..+.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++
T Consensus 5 ~~l~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 5 EHVSKAYL--GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EeeEEEec--CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHh
Confidence 34554442 1246999999999999999999999999999999999998775 999999998765432 235
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+||+||+.+.....+.. . .+....++++++.+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~ 125 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGAS--G--------------------------------DDIRRRVSAALDKV 125 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCC--H--------------------------------HHHHHHHHHHHHHc
Confidence 7999999998888999999998864322100 0 00112367788999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+. ++++++++|+.+
T Consensus 126 ~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~ 198 (222)
T PRK10908 126 GLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIG 198 (222)
T ss_pred CChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 9987666544 469999999999999999999999999999999999999999999988643 567777999999
Q ss_pred HHHhhcccEEEecCCcEE
Q 001507 241 EAYELFDDVILLSEGQIV 258 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~ 258 (1065)
++..++|++++|++|+++
T Consensus 199 ~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 199 LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHhCCEEEEEECCEEc
Confidence 999999999999999975
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=341.21 Aligned_cols=199 Identities=27% Similarity=0.447 Sum_probs=170.5
Q ss_pred CceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------CCCceEEEEccccccCCCCC
Q 001507 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 24 ~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 96 (1065)
|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++++|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999875 99999999876432 12467999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|+||+.|+..... . .+.+..++++++.+||.+..++.+ .
T Consensus 92 v~enl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999988643110 0 001223778899999988776654 4
Q ss_pred cCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCc
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~ 256 (1065)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++ .+.++++++|+.+++..++|++++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE-FGIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 69999999999999999999999999999999999999999999998754 35667779999999999999999999999
Q ss_pred EEEEcCcchHH
Q 001507 257 IVYQGPRVSVL 267 (1065)
Q Consensus 257 i~~~G~~~~~~ 267 (1065)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999987764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=317.64 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=166.6
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~~~~~ 786 (1065)
+.+|+|+||++++|+++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 679999999999999999999999999999999999876 568999999987632 124567999999999998
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|+.||+.+...... .....+..+.++++++.+++.+..+..+ ..||+|||||++|||+|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999998654321 1233444567889999999977666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001507 867 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 919 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 919 (1065)
|+|||+.++..+.+.|+++.+ .|+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999975 4578999999984 664
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=330.81 Aligned_cols=216 Identities=23% Similarity=0.305 Sum_probs=175.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++
T Consensus 11 ~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 11 KNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred EEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhhee
Confidence 4555554332 245899999999999999999999999999999999998775 999999998775432 245799
Q ss_pred EEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 84 YVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 84 yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|++|++. +++..|+++|+.|.....+.. . ......++++++.+||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l 132 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVP--Y--------------------------------DEMHRRVSEALKQVDM 132 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCC
Confidence 9999985 678889999998864321100 0 0011236788999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ +.||||||||++||||++.+|++++|||||+|||+.++..+++.|+++.+. .+++|++++|+.+++
T Consensus 133 ~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~ 206 (269)
T PRK13648 133 LERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEA 206 (269)
T ss_pred chhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHH
Confidence 87666544 569999999999999999999999999999999999999999999988653 356777789999988
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.. +|++++|++|++++.|+++++.
T Consensus 207 ~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 207 ME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred hc-CCEEEEEECCEEEEecCHHHHh
Confidence 75 9999999999999999987764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=322.92 Aligned_cols=204 Identities=23% Similarity=0.281 Sum_probs=167.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC-e--eEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-I--IEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~-~--~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|.++.. ..+++.++|++|++.
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 356999999999999999999999999999999999976531 2 48999999987632 234567999999998
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
+++ .|++||+.+....+.. .......+.++++++.+++.+ ..+. .+..||||||||++|||||+.+|+
T Consensus 99 l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 170 (259)
T PRK14260 99 PFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNK-----SALGLSGGQQQRLCIARALAIKPK 170 (259)
T ss_pred cCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 887 8999999876543311 122333456778888888743 2222 235899999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec----CcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR----GGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~----gg~~~~~g~~ 925 (1065)
+|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.. .|++++.|++
T Consensus 171 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 171 VLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 9999999999999999999999999865 699999999987 67788999999973 4899999975
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=329.68 Aligned_cols=214 Identities=20% Similarity=0.301 Sum_probs=171.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.+.+. .+.+|+|.++|.++... ..+
T Consensus 16 ~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 92 (258)
T PRK14268 16 ENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELR 92 (258)
T ss_pred eeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHh
Confidence 44555443 346999999999999999999999999999999999998642 12599999999876432 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ +||+||+.|+....+.. .+ .....++++++.
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~--~~--------------------------------~~~~~~~~~l~~ 137 (258)
T PRK14268 93 KNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN--KK--------------------------------DLDGVVENALRS 137 (258)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCC--HH--------------------------------HHHHHHHHHHHH
Confidence 56999999988787 89999998864322100 00 011236778888
Q ss_pred hCCc----ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 160 LGLD----TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 160 lgL~----~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
+|+. +..++ .+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+++
T Consensus 138 ~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiiv 209 (258)
T PRK14268 138 AALWDETSDRLKS-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIV 209 (258)
T ss_pred cCCCcchhhhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEE
Confidence 8884 23333 3457999999999999999999999999999999999999999999998853 4677779
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+|+.+++.++||++++|++|++++.|+++++
T Consensus 210 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 210 THNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999988766
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=358.94 Aligned_cols=208 Identities=27% Similarity=0.329 Sum_probs=174.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+|||+|++.+++
T Consensus 16 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93 (510)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccC
Confidence 34679999999999999999999999999999999999876 4689999999876431 12356999999998999
Q ss_pred CCCHHHHHHHHhhcc----CCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 787 GLTVLESLLFSAWLR----LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
.+||+||+.++.... ........+..++++++++.+++.+..++.+ .+|||||||||+|||+|+.+|+|||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~lll 168 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKVII 168 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998753211 0000122334466889999999987766654 5799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|||||+|||+.++..+++.|++++++|+|||++||+++ .+...||++++|. +|++++.|++.+
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~-~G~i~~~g~~~~ 231 (510)
T PRK09700 169 MDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMK-DGSSVCSGMVSD 231 (510)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEeeecchhh
Confidence 99999999999999999999999877999999999986 5677899999998 589999988754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=316.43 Aligned_cols=199 Identities=24% Similarity=0.326 Sum_probs=163.8
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCC
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 783 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~ 783 (1065)
.+.+..++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~ 94 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGG 94 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hccccc
Confidence 344455677889999999999999999999999999999999999876 568999999976421 111233
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+.+.+||+||+.+....+. .......+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|||
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4567899999988654321 122334456788899999987766654 57999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|. +|++++.|
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~-~G~i~~~g 224 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLE-KGKIRFDG 224 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEecC
Confidence 9999999999999999999998777899999999976 5667899999998 57887754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=316.30 Aligned_cols=189 Identities=24% Similarity=0.309 Sum_probs=163.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHH
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
++.+++++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++.+++.+|++
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHH
Confidence 4569999999999999999999999999999999999877 56899999998765433455699999999888889999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD 871 (1065)
||+.+....+. .. ..+.++++++.+++.+..+..+ ..||||||||++|||+++.+|++|+|||||+|||
T Consensus 101 e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (214)
T PRK13543 101 ENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169 (214)
T ss_pred HHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99987654321 11 2234678889999887666544 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 872 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 872 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++++
T Consensus 170 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 170 LEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 99999999999998878999999999987 6788999999986
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=322.25 Aligned_cols=201 Identities=25% Similarity=0.320 Sum_probs=167.0
Q ss_pred ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--CCCceEEEEc-cccccCCC
Q 001507 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVS-QQDWQVAE 94 (1065)
Q Consensus 18 ~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--~~~~~~~yv~-Q~~~~~~~ 94 (1065)
.+++|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.+.... ..++.++|++ |++.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 457999999999999999999999999999999999998775 99999999865332 2345789998 55677788
Q ss_pred CCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcc
Q 001507 95 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 174 (1065)
Q Consensus 95 lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 174 (1065)
+||+||+.+.....+... ++....++.+++.+||++..++.++
T Consensus 110 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR--- 152 (236)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh---
Confidence 999999987643221100 0011236778889999887777654
Q ss_pred cccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecC
Q 001507 175 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254 (1065)
Q Consensus 175 ~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~ 254 (1065)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. ++.+|++++|+.+++..+||++++|++
T Consensus 153 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~ 229 (236)
T cd03267 153 --QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVIDK 229 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998653 356777799999999999999999999
Q ss_pred CcEEEEc
Q 001507 255 GQIVYQG 261 (1065)
Q Consensus 255 G~i~~~G 261 (1065)
|++++.|
T Consensus 230 G~i~~~g 236 (236)
T cd03267 230 GRLLYDG 236 (236)
T ss_pred CEEEecC
Confidence 9998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=330.63 Aligned_cols=214 Identities=23% Similarity=0.332 Sum_probs=174.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCceE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~~ 82 (1065)
+++++.++. ...+|+|+||+|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.+
T Consensus 5 ~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 5 ENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhhe
Confidence 344544432 235999999999999999999999999999999999998775 999999998875432 23569
Q ss_pred EEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
+|++|++. .+...||+||+.|.....+.. .....+.++++++.+|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 125 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLP----------------------------------PIEIRKRVDRALAEIG 125 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCC
Confidence 99999975 466789999998754321100 0001223778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ ..||||||||++|||||+.+|+|++|||||+|||+.++..+++.|+++.. .++||++++|+.++
T Consensus 126 l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~ 198 (274)
T PRK13644 126 LEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEE 198 (274)
T ss_pred CHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHH
Confidence 988776654 46999999999999999999999999999999999999999999998864 36677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+ ..||++++|++|++++.|+++++.
T Consensus 199 ~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 199 L-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred H-hhCCEEEEEECCEEEEECCHHHHh
Confidence 8 569999999999999999987763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=326.45 Aligned_cols=200 Identities=26% Similarity=0.315 Sum_probs=169.6
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 788 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 788 (1065)
+.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .++..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 459999999999999999999999999999999999887 568999999987643 234667999999974 56778
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
||.||+.+..... ........++++++++.+++.+..++.. ..||||||||++|||||+.+|++|||||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred CHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 1223334456789999999987766543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+.++..+.+.|++++++ |.|||++||+++. + ..+|++++|++ |+++..|+.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 224 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAAP 224 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999865 9999999999863 4 46999999985 789888875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=318.96 Aligned_cols=205 Identities=27% Similarity=0.367 Sum_probs=172.2
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCCCceEEEEcc
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 87 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~Q 87 (1065)
++++.++ +..+|+|+||++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .+.++|++|
T Consensus 5 ~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q 77 (223)
T TIGR03740 5 NLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIE 77 (223)
T ss_pred eEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcC
Confidence 4444443 246999999999999999999999999999999999998775 999999998764322 357999999
Q ss_pred ccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccc
Q 001507 88 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 167 (1065)
Q Consensus 88 ~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 167 (1065)
++.+++.+|++||+.+.....+. .+..+.++++.+||.+..|
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~ 119 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGK 119 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHh
Confidence 99888889999999875432110 0123677889999987666
Q ss_pred ccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcc
Q 001507 168 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247 (1065)
Q Consensus 168 t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D 247 (1065)
..+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ .+.+|++++|+.+++..+||
T Consensus 120 ~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 120 KKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLAD 192 (223)
T ss_pred hhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHhcC
Confidence 544 46999999999999999999999999999999999999999999999864 25667779999999999999
Q ss_pred cEEEecCCcEEEEcCcc
Q 001507 248 DVILLSEGQIVYQGPRV 264 (1065)
Q Consensus 248 ~v~~l~~G~i~~~G~~~ 264 (1065)
++++|++|++++.|++.
T Consensus 193 ~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 193 HIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEEEEeCCEEEEecChh
Confidence 99999999999999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=322.84 Aligned_cols=207 Identities=24% Similarity=0.316 Sum_probs=165.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 356999999999999999999999999999999999975321 258999999987642 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ +|++||+.+....+.. .......+.++++++.+++.+...... ...+..||||||||++|||+|+.+|++|+|
T Consensus 95 ~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 170 (250)
T PRK14240 95 PFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLM 170 (250)
T ss_pred cCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 8999999986543211 122334456778888888742111111 112358999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++. +++|||++||+++ .+...+|++++|++ |+++..|+.
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 171 DEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999985 4899999999976 57788999999985 799988864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=328.87 Aligned_cols=217 Identities=22% Similarity=0.299 Sum_probs=172.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.+++ ..+|+|+||++++||+++|+|+||||||||+++|+|.+.+.. +.+|+|.++|.++... ..
T Consensus 10 ~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 10 TENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred EeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 3455555532 459999999999999999999999999999999999987521 2489999999876421 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ +||+||+.|+....+.. .. ...+..++++++
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~---~~------------------------------~~~~~~~~~~l~ 132 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTK---DK------------------------------KKLDEIVEQSLK 132 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCC---CH------------------------------HHHHHHHHHHHH
Confidence 457999999988775 89999998864322100 00 001223667778
Q ss_pred HhCCc----ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 159 ILGLD----TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 159 ~lgL~----~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
.+|+. +..++. ++.|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++++ +.+|++
T Consensus 133 ~~~l~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii 204 (254)
T PRK14273 133 KSALWNEVKDKLNTN-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE---SYTIII 204 (254)
T ss_pred HhCCchhhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc---CCEEEE
Confidence 88873 334443 457999999999999999999999999999999999999999999999852 367777
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+++..++|++++|++|+++..|+++++.
T Consensus 205 ~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 205 VTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999987764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=323.31 Aligned_cols=207 Identities=22% Similarity=0.255 Sum_probs=169.3
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQND 782 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~ 782 (1065)
+++.+|+|+||++++||++||+|+||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 4567999999999999999999999999999999999986531 258999999987632 23456799999998
Q ss_pred CCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 783 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
.++ .+|+.||+.+....+.. .....+.++++++.+++.+..+.... ...+.||||||||++|||||+.+|++|+
T Consensus 99 ~~~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNRY----KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcCc----hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 877 59999999987543321 12234567888999988543221111 1346799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe-------cCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-------RGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-------~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+ ++|+++..|+.
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 999999999999999999999985 4799999999986 5778899999996 36899999875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=355.18 Aligned_cols=123 Identities=23% Similarity=0.336 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHHh---CCCcee
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVA---NPSIVF 862 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~~---~p~il~ 862 (1065)
.+||.|.+.|...+.. .....++++.+||... .+.. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 4566777766543210 1124577888888643 3332 35799999999999999997 599999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe-----cCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~-----~gg~~~~~g~~ 925 (1065)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|++++|. +||++++.|++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999878999999999976 346799999993 47999999975
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=331.28 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=173.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-----CCCce
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRT 81 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-----~~~~~ 81 (1065)
+++++.+++ +.+|+|+||++++|++++|+|||||||||||++|+|.+.|+ +|+|.++|.++... ..++.
T Consensus 5 ~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 5 SDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred EEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhh
Confidence 455555532 45999999999999999999999999999999999999775 99999999886421 12356
Q ss_pred EEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 82 SAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 82 ~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
++|++|++. .+...|+.||+.+.....+.. . .+....++++++.+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~ 124 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVP--E--------------------------------AEITRRVDEALTLV 124 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHc
Confidence 999999975 244568999998754321100 0 00112367789999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ ..||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++... +++|++++|+.+
T Consensus 125 ~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~ 197 (271)
T PRK13638 125 DAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDID 197 (271)
T ss_pred CCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 9987766554 469999999999999999999999999999999999999999999998642 567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++..++|++++|++|++++.|+++++.
T Consensus 198 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 198 LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999887653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=317.41 Aligned_cols=195 Identities=24% Similarity=0.338 Sum_probs=164.0
Q ss_pred CceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEEccccccCCCCCHHHHHH
Q 001507 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 102 (1065)
Q Consensus 24 ~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l~ 102 (1065)
|+||++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999775 999999998775432 2357999999999899999999998
Q ss_pred HHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCchhh
Q 001507 103 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182 (1065)
Q Consensus 103 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 182 (1065)
++...... .. ...+..++++++.+||.+..++.+ ..|||||
T Consensus 93 ~~~~~~~~---~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLK---LT-------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred cccccccC---cc-------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 75321100 00 001223778899999987766654 4699999
Q ss_pred hhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEc
Q 001507 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 183 kqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G 261 (1065)
|||++||||++.+|++++|||||+|||+.++..+.+.|+++++. .+.+|++++|+.+++.++||++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999998653 3567777999999999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=329.05 Aligned_cols=225 Identities=22% Similarity=0.293 Sum_probs=178.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC--------CC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--------VP 78 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~--------~~ 78 (1065)
+++++.++ +..+|+|+||++++||+++|+||||||||||+++|+|.+.|+...+|+|.++|.++... ..
T Consensus 8 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 84 (262)
T PRK09984 8 EKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84 (262)
T ss_pred eeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHH
Confidence 45555543 34699999999999999999999999999999999999987534579999999876432 11
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++.+||+||+.+....... ... . ..+.. ....+.+++++++
T Consensus 85 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~--~~~------~---~~~~~---------------~~~~~~~~~~~l~ 138 (262)
T PRK09984 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTP--FWR------T---CFSWF---------------TREQKQRALQALT 138 (262)
T ss_pred HhheEEEccccccccCCcHHHHHHhhhccccc--chh------h---hcccc---------------cHHHHHHHHHHHH
Confidence 34689999999889999999999875321000 000 0 00000 0011234788999
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||++..++.+ ..|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++++. .+++|++++|+
T Consensus 139 ~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~ 212 (262)
T PRK09984 139 RVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQ 212 (262)
T ss_pred HcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 999987666654 469999999999999999999999999999999999999999999998753 35777789999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
.+++..+||++++|++|++++.|+++++
T Consensus 213 ~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 213 VDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999987654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=313.52 Aligned_cols=186 Identities=27% Similarity=0.334 Sum_probs=160.1
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL 88 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCc
Confidence 34579999999999999999999999999999999999876 568999999987532 23556799999999888899
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|++||+.+.... . ..++++++++.+++.+..++.. ..||||||||++|||+|+.+|++|+|||||+
T Consensus 89 tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 89 SVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred CHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999999875311 0 2345788999999987766543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEE
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
|||+.++..+.+.|+++.++|+|+|++||++. +....+++++++
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999998777999999999986 567788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=321.90 Aligned_cols=204 Identities=24% Similarity=0.356 Sum_probs=167.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-----CCCce
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRT 81 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-----~~~~~ 81 (1065)
+++++.+++ ..+|+++||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++... ..++.
T Consensus 4 ~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 4 KNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred EEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhc
Confidence 345554432 46999999999999999999999999999999999998775 99999999876421 12457
Q ss_pred EEEEccccccCCCCCHHHHHHHHhh-ccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
++|++|++.+++.+|++||+.++.. .++. + . .+....++++++.+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~----~--~----------------------------~~~~~~~~~~l~~~ 123 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGM----S--K----------------------------AEAEERALELLEKV 123 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCC----C--H----------------------------HHHHHHHHHHHHHc
Confidence 9999999998988999999987532 1100 0 0 00122367788999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||++..++.+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. +++|++++|+.+
T Consensus 124 ~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tvi~~sh~~~ 196 (213)
T cd03262 124 GLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMVVVTHEMG 196 (213)
T ss_pred CCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHH
Confidence 9987666554 469999999999999999999999999999999999999999999998752 566777999999
Q ss_pred HHHhhcccEEEecCCcE
Q 001507 241 EAYELFDDVILLSEGQI 257 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i 257 (1065)
++.++||++++|++|++
T Consensus 197 ~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 197 FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhCCEEEEEeCCcC
Confidence 99999999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=322.28 Aligned_cols=208 Identities=24% Similarity=0.262 Sum_probs=166.7
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc----ccccceEEEEcCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ----ETFARISGYCEQNDI 783 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~ 783 (1065)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 3457999999999999999999999999999999999986531 358999999987531 234567999999998
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|+.||+.+....... .......+++.++++.+++.+....... .....|||||||||+|||+|+.+|+||||
T Consensus 94 ~~~-~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQGI--KDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCc-ccHHHHHHhHHHhcCC--CchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 8999999876432211 1122334556778888887532111111 12357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|+ +|+++..|+.
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 228 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFL-MGELVEHDDT 228 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999865 689999999986 5778899999998 5899998874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=316.89 Aligned_cols=199 Identities=21% Similarity=0.313 Sum_probs=167.0
Q ss_pred cccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-CCCceEEEEccccccCCCCCHHH
Q 001507 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRE 99 (1065)
Q Consensus 21 iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTv~e 99 (1065)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 468999999999999999999999999999999999776 99999999886542 23467999999999899899999
Q ss_pred HHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCc
Q 001507 100 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 179 (1065)
Q Consensus 100 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 179 (1065)
|+.+...... .. . ...+..++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KL--N-------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Cc--c-------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532110 00 0 001223678899999987666554 4699
Q ss_pred hhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEE
Q 001507 180 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 259 (1065)
Q Consensus 180 GGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~ 259 (1065)
||||||++||||++.+|++++|||||+|||..++..+.+.|+++.+. ++++|++++|+.+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998653 35677779999999999999999999999998
Q ss_pred EcC
Q 001507 260 QGP 262 (1065)
Q Consensus 260 ~G~ 262 (1065)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=321.07 Aligned_cols=201 Identities=22% Similarity=0.254 Sum_probs=164.9
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--CeeEEEEEECCccCCcccc-cceEEEEcCCCC--CCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPG 787 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~--~~~~G~i~i~g~~~~~~~~-~~~~~~v~q~~~--~~~~ 787 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++..... ++.++||+|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 3689999999999999999999999999999999998763 1168999999987653322 357999999974 4466
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc---ccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
+|+.+++.+.+..... .. ..++++++++.+++.+. .+.. +..|||||||||+|||||+.+|++||||
T Consensus 96 ~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLD 165 (254)
T PRK10418 96 HTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIAD 165 (254)
T ss_pred ccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 7999998764332211 11 22567889999998752 3332 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|+++..|+.
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~G~i~~~~~~ 225 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-HGRIVEQGDV 225 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999999998764 899999999986 5667899999998 5899998875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=314.17 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=158.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL 89 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence 34579999999999999999999999999999999999877 568999999987542 23456789999999888999
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|+.||+.+....+. . ...++++++++.+++.+..++.. ..||||||||++|||||+.+|++|+|||||+
T Consensus 90 tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 90 TALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred cHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999988654321 1 12356788999999987666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEE
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
|||+.++..+.+.|++++++|.|||++||+++ .+...-+|++++
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999998777899999999976 344433555554
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=335.32 Aligned_cols=218 Identities=18% Similarity=0.291 Sum_probs=173.0
Q ss_pred HHhhhhcCCcc--ceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCC--------C
Q 001507 7 RQLRIYRGNRS--KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE--------F 76 (1065)
Q Consensus 7 ~~~~~~~~~~~--~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~--------~ 76 (1065)
+++++.++++. ...+|+|+||++++||+++|+||||||||||+++|+|.+.|. +|+|.++|.++.. .
T Consensus 10 ~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~ 86 (289)
T PRK13645 10 DNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVK 86 (289)
T ss_pred EEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHH
Confidence 45555554321 135999999999999999999999999999999999999775 9999999987632 1
Q ss_pred CCCceEEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 77 VPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 77 ~~~~~~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
..++.++|++|++. .+...||+||+.|+....+.. . ......+++
T Consensus 87 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~--~--------------------------------~~~~~~~~~ 132 (289)
T PRK13645 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN--K--------------------------------QEAYKKVPE 132 (289)
T ss_pred HHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHH
Confidence 12457999999974 233469999998864321100 0 001123677
Q ss_pred HHHHhCCc-ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEE
Q 001507 156 IMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 156 ~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~ 234 (1065)
+++.++|+ +..++. +..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+. .+++|++
T Consensus 133 ll~~~~L~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii 206 (289)
T PRK13645 133 LLKLVQLPEDYVKRS-----PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIM 206 (289)
T ss_pred HHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEE
Confidence 88899995 455544 3569999999999999999999999999999999999999999999988653 3567777
Q ss_pred ecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 235 ~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|+.+++.++||++++|++|++++.|+.+++.
T Consensus 207 isH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 207 VTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999887653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=323.87 Aligned_cols=221 Identities=21% Similarity=0.275 Sum_probs=173.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCc--CCCCceeEEEEECCccCCCCC----CCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFV----PPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~--~~~~~~~G~i~~~g~~~~~~~----~~~ 80 (1065)
+++++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|.+ .| .+|+|.++|.++.... .+.
T Consensus 4 ~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 4 KDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred eeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCHHHhhcc
Confidence 44555543 246999999999999999999999999999999999985 34 4999999998765432 123
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+|++||+.+............ . ....+....++++++.+
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~---------------~------------~~~~~~~~~~~~~l~~~ 130 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEE---------------P------------LDLLDFLKLLKAKLALL 130 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccc---------------c------------ccHHHHHHHHHHHHHHc
Confidence 48999999999999999999987543211000000 0 00001123478899999
Q ss_pred CCcc-cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 161 GLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 161 gL~~-~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
||++ ..++.++ ..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .+++|++++|+.
T Consensus 131 ~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~ 204 (243)
T TIGR01978 131 GMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQ 204 (243)
T ss_pred CCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecH
Confidence 9973 4454432 14999999999999999999999999999999999999999999999864 356777799999
Q ss_pred hHHHhh-cccEEEecCCcEEEEcCcchH
Q 001507 240 PEAYEL-FDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 240 ~~~~~~-~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+++... ||++++|++|++++.|+++++
T Consensus 205 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 205 RLLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 999988 899999999999999988754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=329.51 Aligned_cols=216 Identities=26% Similarity=0.347 Sum_probs=175.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .++.++
T Consensus 11 ~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 11 ENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceE
Confidence 445554432 2346999999999999999999999999999999999998775 999999998875422 345799
Q ss_pred EEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 84 YVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 84 yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|++|++. .++.+||+||+.++...... + .......++++++.+||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~----~------------------------------~~~~~~~~~~~l~~~~l 132 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKV----P------------------------------PKKMKDIIDDLAKKVGM 132 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCC----C------------------------------HHHHHHHHHHHHHHcCC
Confidence 9999974 57778999999875432110 0 00012247888999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.++..+++.|+++++. ++++|++++|+.+++
T Consensus 133 ~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~ 206 (271)
T PRK13632 133 EDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEA 206 (271)
T ss_pred HHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHH
Confidence 87776654 469999999999999999999999999999999999999999999998653 446777788998888
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
. .||++++|++|++++.|+.+++.
T Consensus 207 ~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 207 I-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred h-hCCEEEEEECCEEEEecCHHHHh
Confidence 5 79999999999999999877653
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=329.50 Aligned_cols=215 Identities=27% Similarity=0.363 Sum_probs=174.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-----CCCce
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRT 81 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-----~~~~~ 81 (1065)
+++++.++. ...+|+|+||+|++||+++|+||||||||||+++|+|.+++. +|+|.++|.++... ..++.
T Consensus 5 ~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 5 RDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhh
Confidence 445555532 235999999999999999999999999999999999998775 99999999887421 12457
Q ss_pred EEEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 82 SAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 82 ~~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
++|++|++. .+...||+||+.++....+. . . .+....+.++++.+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~----~---~---------------------------~~~~~~~~~~l~~~ 125 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGL----S---K---------------------------EEVEKRVKEALKAV 125 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCC----C---H---------------------------HHHHHHHHHHHHHC
Confidence 999999963 33457999999875321110 0 0 00112367889999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.+ +.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. +++|++++|+.+
T Consensus 126 ~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~ 198 (275)
T PRK13639 126 GMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVD 198 (275)
T ss_pred CCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHH
Confidence 9988777655 469999999999999999999999999999999999999999999998652 567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++..+||++++|++|++++.|+++++.
T Consensus 199 ~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 199 LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=323.28 Aligned_cols=203 Identities=26% Similarity=0.298 Sum_probs=165.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc-----CCcc---c----ccceEEEEc
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQE---T----FARISGYCE 779 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~-----~~~~---~----~~~~~~~v~ 779 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+ +... . .++.++|++
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 3579999999999999999999999999999999999876 568999999987 4321 1 244699999
Q ss_pred CCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHh
Q 001507 780 QNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVA 856 (1065)
Q Consensus 780 q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~ 856 (1065)
|++. +.+.+|+.||+.+...... . .........+.++++.+++.+ ..++. +..||||||||++|||||+.
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVG-A-RHYGDIRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhc-c-CcHHHHHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhc
Confidence 9974 5677899999976432111 1 112233456788899999863 44433 35799999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 857 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 857 ~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|+||||||||+|||+.+...+.+.|++++++ |.|||++||+++ .+...+|++++|. +|++++.|+.
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 236 (258)
T PRK11701 169 HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMK-QGRVVESGLT 236 (258)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 99999999999999999999999999998765 899999999986 4667899999998 5899998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=337.54 Aligned_cols=230 Identities=17% Similarity=0.205 Sum_probs=179.2
Q ss_pred HHHhhhhcCCc-cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC-CceeEEEEECCccCCCCCC-----
Q 001507 6 LRQLRIYRGNR-SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP----- 78 (1065)
Q Consensus 6 ~~~~~~~~~~~-~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~-~~~~G~i~~~g~~~~~~~~----- 78 (1065)
++++++.+... ....+|+||||+|++||+++|+|+||||||||+++|+|++.+. .+.+|+|.++|.++.....
T Consensus 6 v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (330)
T PRK15093 6 IRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85 (330)
T ss_pred EeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHH
Confidence 45666665322 3457999999999999999999999999999999999998642 2358999999988754321
Q ss_pred --CceEEEEccccc--cCCCCCHHHHHHHHhhccCC-CCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHH
Q 001507 79 --PRTSAYVSQQDW--QVAEMTVRETLDFAGQCQGV-GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 153 (1065)
Q Consensus 79 --~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 153 (1065)
++.++||+|++. +.+.+||.+++.+....... +..+. .. .+...++
T Consensus 86 ~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~----------------~~-------------~~~~~~~ 136 (330)
T PRK15093 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQ----------------RF-------------GWRKRRA 136 (330)
T ss_pred HhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccc----------------cH-------------HHHHHHH
Confidence 246999999975 57889999999764221000 00000 00 0012347
Q ss_pred HHHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEE
Q 001507 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233 (1065)
Q Consensus 154 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii 233 (1065)
.++|+.+||.+..+ +-++.+..|||||||||+|||||+.+|++|+|||||+|||+.++.++++.|+++.++ .+.+|+
T Consensus 137 ~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii 213 (330)
T PRK15093 137 IELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTIL 213 (330)
T ss_pred HHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEE
Confidence 88999999975321 113445679999999999999999999999999999999999999999999998753 356788
Q ss_pred EecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 234 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 234 ~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++|+...+.+++|+|++|++|++++.|+.+++.
T Consensus 214 ~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 214 LISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 8999999999999999999999999999987764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.35 Aligned_cols=207 Identities=28% Similarity=0.363 Sum_probs=167.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 457999999999999999999999999999999999976421 268999999987642 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|++||+.+....... ......++.++++++.+++.+..+... .....+||||||||++|||||+.+|++|+|
T Consensus 95 ~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~la~al~~~p~llll 170 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVILL 170 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 887 8999999886533211 122233455778888888854211111 112368999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...+|++++|++ |+++..|+.
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 171 DEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred eCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999864 799999999986 57788999999985 799988874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=321.80 Aligned_cols=204 Identities=26% Similarity=0.319 Sum_probs=165.8
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCe---eEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI---IEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~---~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 4579999999999999999999999999999999999865322 37999999987632 234567999999999
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccCCCCCCCCHHHHHHHHHHHHHHhCCC
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 859 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~ 859 (1065)
+++.+|+.||+.+....... ...+...+.++++++.+++.. ..+. .+..||||||||++|||+|+.+|+
T Consensus 96 ~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEPE 168 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999876432211 112233445666677776542 2232 236799999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 860 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 860 il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|++ |++++.|+.
T Consensus 169 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 169 ILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999864 799999999986 56778999999984 799998875
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=309.03 Aligned_cols=195 Identities=27% Similarity=0.412 Sum_probs=170.3
Q ss_pred CceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------CCCceEEEEccccccCCCCC
Q 001507 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 24 ~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lT 96 (1065)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||.-+.+. ..+|++|||+|+..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 578888776799999999999999999999999987 99999999765332 23588999999999999999
Q ss_pred HHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccc
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 176 (1065)
|+-||.|+.... .....+++.+.||++|..+.. +.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----PG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----CC
Confidence 999999975321 011267889999999988755 45
Q ss_pred cCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCc
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~ 256 (1065)
.|||||||||+|+|||++.|++|+||||.+.||.....+++-.|.++.++.+- -|+.++|..+|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I-PIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI-PILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC-CEEEEecCHHHHHhhhheEEEecCCe
Confidence 69999999999999999999999999999999999999999999999887644 45668999999999999999999999
Q ss_pred EEEEcCcchHH
Q 001507 257 IVYQGPRVSVL 267 (1065)
Q Consensus 257 i~~~G~~~~~~ 267 (1065)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999998875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=322.93 Aligned_cols=213 Identities=23% Similarity=0.304 Sum_probs=171.3
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+.++++++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~-------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFY-------------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 46667766544 345799999999999999999999999999999999998642 13689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGL 834 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 834 (1065)
.++.. ..+++.++|++|++.+++. |+.||+.+....+.. .. ...++++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~---~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGY---DG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCC---cH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2346679999999888775 999999886543321 11 23456788999998853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEE-EE
Q 001507 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL-FM 913 (1065)
Q Consensus 835 ~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~-~l 913 (1065)
+..||||||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 358999999999999999999999999999999999999999999999976 489999999986 5667899976 45
Q ss_pred ecCcEEEEeCCC
Q 001507 914 KRGGELIYAGPL 925 (1065)
Q Consensus 914 ~~gg~~~~~g~~ 925 (1065)
. +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 5899988874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=324.35 Aligned_cols=219 Identities=23% Similarity=0.303 Sum_probs=175.3
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+..+|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGF-------------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEE-------------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 45667776554 346799999999999999999999999999999999998652 13689999999
Q ss_pred ccCCc----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCC
Q 001507 764 YPKRQ----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839 (1065)
Q Consensus 764 ~~~~~----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 839 (1065)
.++.. ..+++.++|++|++.+++ .|++||+.+...... .....+..+.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234567999999988887 799999987643221 12233334456788888888643221111 12458
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001507 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 919 (1065)
Q Consensus 840 lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 919 (1065)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|. +|++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~-~G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFF-DGRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999875 589999999986 5778899999998 5899
Q ss_pred EEeCCC
Q 001507 920 IYAGPL 925 (1065)
Q Consensus 920 ~~~g~~ 925 (1065)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.72 Aligned_cols=230 Identities=20% Similarity=0.263 Sum_probs=177.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC----CCce
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~----~~~~ 81 (1065)
++++++.++ +.++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .+..
T Consensus 8 ~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 8 VSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred EeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcC
Confidence 345555443 356999999999999999999999999999999999998775 999999998775432 1235
Q ss_pred EEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 ~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
++|++|++.+++.+||+||+.++....... +..... .+. +. .. ....+....++++++.+|
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~---~~~~~~------~~~-~~--~~-------~~~~~~~~~~~~~l~~~g 142 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKT---GLFSGL------LKT-PA--FR-------RAESEALDRAATWLERVG 142 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccc---hhhhhh------ccc-cc--cc-------cchhHHHHHHHHHHHhCC
Confidence 899999999999999999998864311000 000000 000 00 00 000011234778899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ +.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++ .+++|++++|+.++
T Consensus 143 l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~ 216 (255)
T PRK11300 143 LLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKL 216 (255)
T ss_pred hhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHH
Confidence 987666554 469999999999999999999999999999999999999999999998653 35677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+.++||++++|++|++++.|+++++
T Consensus 217 ~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 217 VMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHhCCEEEEEECCeEEecCCHHHH
Confidence 9999999999999999999987765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=287.06 Aligned_cols=217 Identities=22% Similarity=0.263 Sum_probs=180.0
Q ss_pred HHHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-------
Q 001507 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------- 77 (1065)
Q Consensus 5 ~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------- 77 (1065)
.+++++..++. ..+|++||+..+.|+++.|+|.|||||||+|++|.=+-.|. .|.|.+||+.+.-..
T Consensus 8 ~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 8 EVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCee
Confidence 45677777654 35999999999999999999999999999999998766665 999999998753211
Q ss_pred ---------CCceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCc
Q 001507 78 ---------PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQK 148 (1065)
Q Consensus 78 ---------~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1065)
.+.+.++|+|+..++.++||.||+.-+..- .+...+.+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvh---------------------------------VLg~~k~e 128 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH---------------------------------VLGVSKAE 128 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchH---------------------------------hhcCCHHH
Confidence 112469999999999999999999653210 01111222
Q ss_pred chhHHHHHHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCC
Q 001507 149 TSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 228 (1065)
Q Consensus 149 ~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~ 228 (1065)
..++++.+|...||.+..|.. +..|||||+||++|||||+.+|+++++|||||+|||+-.-++.+.+++++.+
T Consensus 129 a~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-- 201 (256)
T COG4598 129 AIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-- 201 (256)
T ss_pred HHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--
Confidence 334578899999999887754 4469999999999999999999999999999999999999999999999975
Q ss_pred CEEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 229 GTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 229 ~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++|.+.++|.+.++.+...+|++|++|.|-++|+++++.
T Consensus 202 grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 202 GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred CCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 566777999999999999999999999999999998873
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=326.20 Aligned_cols=222 Identities=23% Similarity=0.330 Sum_probs=174.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCC--C---CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKE--F---VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~--~---~~~ 79 (1065)
+++++.+++ ..+|+|+||++++||+++|+||||||||||+++|+|.++|. .+.+|+|.++|.++.. . ..+
T Consensus 8 ~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (253)
T PRK14267 8 VNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR 84 (253)
T ss_pred EeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence 455555432 46999999999999999999999999999999999998762 1358999999988742 1 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++.+||.||+.++...+...... ......++++++.
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~ 132 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKK 132 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHH
Confidence 57999999999899999999998764322100000 0011236677888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||........ ++.+..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ + .+|++++|+.
T Consensus 133 ~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~ 208 (253)
T PRK14267 133 AALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSP 208 (253)
T ss_pred cCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCH
Confidence 88753211111 234567999999999999999999999999999999999999999999999853 3 6777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++..+||+|++|++|++++.|+++++.
T Consensus 209 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 209 AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999987663
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=321.71 Aligned_cols=219 Identities=25% Similarity=0.305 Sum_probs=174.1
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.++++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFY-------------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEE-------------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 46677776554 235799999999999999999999999999999999998652 13689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
.++.. ..+++.++|++|++.+++. |++||+.+....... .......+.++++++.+++.+....... ..+.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 167 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLH-ENAF 167 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcc
Confidence 87642 2346679999999888876 999999876433211 1122334567888888888532111111 1235
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|+ +|+
T Consensus 168 ~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 244 (272)
T PRK14236 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY-MGK 244 (272)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999975 799999999986 5677899999998 589
Q ss_pred EEEeCCC
Q 001507 919 LIYAGPL 925 (1065)
Q Consensus 919 ~~~~g~~ 925 (1065)
++..|+.
T Consensus 245 i~~~g~~ 251 (272)
T PRK14236 245 LVEYGDT 251 (272)
T ss_pred EEecCCH
Confidence 9998875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=320.97 Aligned_cols=220 Identities=22% Similarity=0.276 Sum_probs=174.8
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCc
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGY 764 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~ 764 (1065)
+.++|+++.+ +++.+|+|+||++++||++||+|+||||||||+++|+|..++. ...|+|.++|.
T Consensus 8 l~~~nl~~~~-------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 8 IKVNNLSFYY-------------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred EEEeeEEEEe-------------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 5666666544 2346999999999999999999999999999999999986631 13799999998
Q ss_pred cCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCC
Q 001507 765 PKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839 (1065)
Q Consensus 765 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 839 (1065)
++.. ..+++.++|++|++.+++ .|+.||+.+....... ....+..+.+.++++.+++.+..+.... ..+..
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 150 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIH-KSALD 150 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhc-CCccc
Confidence 7531 234567999999988887 8999999876432211 1223334567889999988542211111 12357
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcCeEEEEecC--
Q 001507 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-- 916 (1065)
Q Consensus 840 lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~~~l~~g-- 916 (1065)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+|++++|+++
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~ 229 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNEN 229 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999865 4899999999986 577889999999852
Q ss_pred --cEEEEeCCC
Q 001507 917 --GELIYAGPL 925 (1065)
Q Consensus 917 --g~~~~~g~~ 925 (1065)
|++++.|++
T Consensus 230 ~~G~i~~~~~~ 240 (261)
T PRK14258 230 RIGQLVEFGLT 240 (261)
T ss_pred cCceEEEeCCH
Confidence 899999876
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=323.84 Aligned_cols=222 Identities=19% Similarity=0.286 Sum_probs=175.4
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++. +.+|+|+|+++++||+++|+||||||||||+++|+|.+.+..+.+|+|.++|+++.... .++.+
T Consensus 5 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 5 TTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4556665542 46999999999999999999999999999999999987542345999999999875432 24579
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++ .||+||+.++...++.... . ...+.+++++++.+||
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l 128 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGL 128 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCC
Confidence 99999998887 6999999876432210000 0 0012236778899998
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
........ ++..+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++++++++|+.+++
T Consensus 129 ~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~ 204 (246)
T PRK14269 129 FEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQG 204 (246)
T ss_pred ChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHH
Confidence 53211111 234567999999999999999999999999999999999999999999998752 46777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++|++++|++|++++.|+.+++.
T Consensus 205 ~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 205 KRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999887763
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.33 Aligned_cols=207 Identities=23% Similarity=0.280 Sum_probs=165.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||+|++|++++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 456999999999999999999999999999999999986631 236999999987532 234677999999998
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++. |++||+.+....+... ..+...+.++++++.+++.+...... ...+..||||||||++|||||+.+|++|+|
T Consensus 96 ~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllL 171 (251)
T PRK14249 96 PFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILM 171 (251)
T ss_pred cCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 9999999875433111 11223345677788888753211111 112468999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++. +++|||++||+++ .+.+.+|++++|. +|++++.|+.
T Consensus 172 DEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 230 (251)
T PRK14249 172 DEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGDLVEYGRT 230 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCeEEEeCCH
Confidence 99999999999999999999985 5899999999986 5677899999998 5799988875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=324.45 Aligned_cols=213 Identities=25% Similarity=0.308 Sum_probs=173.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCC------C---C
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------F---V 77 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~------~---~ 77 (1065)
+++++.+++ +.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . .
T Consensus 6 ~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 6 NGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHH
Confidence 455555432 46999999999999999999999999999999999998775 9999999987521 0 1
Q ss_pred CCceEEEEccccccCCCCCHHHHHHHH-hhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHH
Q 001507 78 PPRTSAYVSQQDWQVAEMTVRETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 156 (1065)
Q Consensus 78 ~~~~~~yv~Q~~~~~~~lTv~e~l~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 156 (1065)
.++.++|++|++.+++.+||+||+.+. ....+.. . .+....++++
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~---~-------------------------------~~~~~~~~~~ 125 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLS---K-------------------------------DQALARAEKL 125 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCC---H-------------------------------HHHHHHHHHH
Confidence 235699999999989999999999753 1111100 0 0011237788
Q ss_pred HHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 001507 157 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 157 l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~ 236 (1065)
++.+||++..++.+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ .++++++++
T Consensus 126 l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~--~~~tii~~s 198 (242)
T PRK11124 126 LERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVT 198 (242)
T ss_pred HHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH--cCCEEEEEe
Confidence 99999987666554 46999999999999999999999999999999999999999999998864 256777799
Q ss_pred CCchHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 237 ~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
|+.+++.+++|++++|++|++++.|+++++
T Consensus 199 h~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 199 HEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999987654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=325.95 Aligned_cols=215 Identities=21% Similarity=0.314 Sum_probs=171.8
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~g 763 (1065)
.+.++++++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYY-------------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 45666666544 33569999999999999999999999999999999999642 1 12689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGL 834 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 834 (1065)
.++.. ..+++.++|++|++.+++. ||+||+.+....+... ......+.+.++++.+++.+ ..+.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 178 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGIN--DKKQLEEIVEKSLRKAALWDEVSDRLDK---- 178 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCC--cHHHHHHHHHHHHHHhCCccchhhHhhC----
Confidence 87532 1345679999999988875 9999999865432111 12233456778888888742 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 835 ~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 179 -~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 179 -NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred -ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 2357999999999999999999999999999999999999999999999865 689999999986 5677899999998
Q ss_pred cCcEEEEeCCC
Q 001507 915 RGGELIYAGPL 925 (1065)
Q Consensus 915 ~gg~~~~~g~~ 925 (1065)
+|+++..|+.
T Consensus 256 -~G~i~~~g~~ 265 (286)
T PRK14275 256 -EGVLVEHAPT 265 (286)
T ss_pred -CCEEEEeCCH
Confidence 5899998875
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=328.47 Aligned_cols=219 Identities=26% Similarity=0.357 Sum_probs=176.2
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.+
T Consensus 14 i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 14 LRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred EeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhhe
Confidence 345555443 246999999999999999999999999999999999998765 999999998764322 23569
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++.+||.||+.++..... . ... ... ...+..++++++.+||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~-~~~--------------~~~--------------~~~~~~~~~~l~~~~l 137 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWH-G-ALG--------------RFG--------------AADREKVEEAISLVGL 137 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCccccc-c-ccc--------------CCC--------------HHHHHHHHHHHHHcCC
Confidence 999999888888999999987531100 0 000 000 0012247788999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..++.++ .|||||||||+|||||+.+|+|+||||||+|||+.++..+.+.|+++++. .+++|++++|+.+++
T Consensus 138 ~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-~~~tiii~sH~~~~i 211 (265)
T PRK10575 138 KPLAHRLVD-----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIAVLHDINMA 211 (265)
T ss_pred HHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 876666554 59999999999999999999999999999999999999999999998653 256677799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
.++||++++|++|++++.|+.+++
T Consensus 212 ~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 212 ARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999987665
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=327.55 Aligned_cols=207 Identities=22% Similarity=0.267 Sum_probs=170.4
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEEEEccccc--cCC
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW--QVA 93 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~yv~Q~~~--~~~ 93 (1065)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999875 999999998765321 1346999999974 567
Q ss_pred CCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc-ccccccccC
Q 001507 94 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGD 172 (1065)
Q Consensus 94 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~ 172 (1065)
.+||.|++.+......... .......++++++.+||. +..++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------------------------------PEQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------------------------------HHHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 8899999987543211000 000122377889999994 5555443
Q ss_pred cccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEe
Q 001507 173 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252 (1065)
Q Consensus 173 ~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l 252 (1065)
..|||||||||+||+||+.+|+|++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++..+||++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 469999999999999999999999999999999999999999999998753 3567777999999999999999999
Q ss_pred cCCcEEEEcCcchHH
Q 001507 253 SEGQIVYQGPRVSVL 267 (1065)
Q Consensus 253 ~~G~i~~~G~~~~~~ 267 (1065)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999877653
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.89 Aligned_cols=200 Identities=25% Similarity=0.370 Sum_probs=171.8
Q ss_pred ccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-------CCceEEEEccc
Q 001507 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQ 88 (1065)
Q Consensus 16 ~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-------~~~~~~yv~Q~ 88 (1065)
..+..||++|++.+++||.++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++.... ..+.+|+|+|.
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 45688999999999999999999999999999999999998776 999999999876553 23679999999
Q ss_pred cccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccc
Q 001507 89 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 168 (1065)
Q Consensus 89 ~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t 168 (1065)
..++|++|..||+...+.+++.... +......+.|+.+||.+-.+-
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~H 142 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLTH 142 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccccc
Confidence 9999999999999998877653211 112236778999999876543
Q ss_pred cccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhccc
Q 001507 169 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 248 (1065)
Q Consensus 169 ~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~ 248 (1065)
++.+|||||+|||+||||+...|+|||-||||-.||..+..+|.+++..+.++ .++|.+.++||.. +...|||
T Consensus 143 -----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~~-LA~Rc~R 215 (228)
T COG4181 143 -----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDPQ-LAARCDR 215 (228)
T ss_pred -----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCHH-HHHhhhh
Confidence 35679999999999999999999999999999999999999999999999876 5778888999865 5567899
Q ss_pred EEEecCCcEEE
Q 001507 249 VILLSEGQIVY 259 (1065)
Q Consensus 249 v~~l~~G~i~~ 259 (1065)
.+-|.+|+++.
T Consensus 216 ~~r~~~G~l~~ 226 (228)
T COG4181 216 QLRLRSGRLVE 226 (228)
T ss_pred eeeeecceecc
Confidence 99999999864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=340.56 Aligned_cols=210 Identities=29% Similarity=0.369 Sum_probs=177.4
Q ss_pred cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccC--CCC---CCCceEEEEcccc--
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF--KEF---VPPRTSAYVSQQD-- 89 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~--~~~---~~~~~~~yv~Q~~-- 89 (1065)
....+++||||++++||+++|+|+||||||||.++|+|++.|. +|+|.++|.+. ... ..++.+-+++|+|
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 3467999999999999999999999999999999999999875 99999999872 111 1235678888886
Q ss_pred ccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccccccc
Q 001507 90 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 169 (1065)
Q Consensus 90 ~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 169 (1065)
.+.|.+||+++|......+.... ..+.++++.++++..||+..
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 57899999999987665432211 01123358899999999852
Q ss_pred ccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccE
Q 001507 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 170 vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v 249 (1065)
..++++..|||||||||+|||||+.+|+++++|||||+||+.++.++.++|+++.++. +.+.++|+||...+..+||||
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceE
Confidence 3356778899999999999999999999999999999999999999999999998765 567777999999999999999
Q ss_pred EEecCCcEEEEcCcchHH
Q 001507 250 ILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 250 ~~l~~G~i~~~G~~~~~~ 267 (1065)
++|++|++++.||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999888774
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=309.10 Aligned_cols=179 Identities=25% Similarity=0.316 Sum_probs=150.6
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCC-CC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HS 785 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~-~~ 785 (1065)
++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4569999999999999999999999999999999999876 568999999987631 134567999999973 23
Q ss_pred CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDE 865 (1065)
...|++||+.+..... ........++++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998865322 1223334456788999999987666644 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900 (1065)
Q Consensus 866 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 900 (1065)
||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=303.71 Aligned_cols=158 Identities=29% Similarity=0.445 Sum_probs=142.8
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCCH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 469999999999999999999999999999999999876 468999999987643 2345679999999988888999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.||+. ||||||||++|||||+.+|++|+|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
|+.++..+.+.|++++++|.|||++||+++ .+...+|++++|++ |+
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 999999999999999877899999999986 56678999999985 44
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=318.88 Aligned_cols=207 Identities=25% Similarity=0.330 Sum_probs=165.1
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC--C-eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
.+.+|+|+|++|++||++||+||||||||||+++|+|..++ . +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 45799999999999999999999999999999999998641 1 358999999987532 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|++||+.+....+.. ...+...+.++++++.+++........ ......||||||||++|||||+.+|++|+|
T Consensus 96 ~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred cCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 876 7999999876432211 112223355778888888842110000 112358999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 172 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 230 (251)
T PRK14251 172 DEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM-NGDLIEAGPT 230 (251)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999854 799999999986 5677899999998 5799888874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=324.77 Aligned_cols=221 Identities=21% Similarity=0.271 Sum_probs=174.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|++. |..+.+|+|.++|.++... ..+
T Consensus 8 ~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 8 EQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 45555543 2469999999999999999999999999999999999985 3213589999999886431 234
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++.+||+||+.++....+. .+. .+.+..++++++.
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~---~~~------------------------------~~~~~~~~~~l~~ 131 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR---VNR------------------------------SEADEIVESSLKR 131 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCC---CCH------------------------------HHHHHHHHHHHHH
Confidence 6799999999989989999999875432110 000 0011236778888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+|+.+...... +..+..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ + ++|++++|+.
T Consensus 132 ~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~ 207 (252)
T PRK14256 132 VALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNM 207 (252)
T ss_pred cCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCH
Confidence 88864211111 123457999999999999999999999999999999999999999999999863 3 5777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++.++||++++|++|++++.|+.+++.
T Consensus 208 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 208 QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999987763
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=354.78 Aligned_cols=211 Identities=22% Similarity=0.313 Sum_probs=178.3
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~ 767 (1065)
+..+|+++.+ +++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 12 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 76 (510)
T PRK15439 12 LCARSISKQY-------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCA 76 (510)
T ss_pred EEEEeEEEEe-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 5666666544 34579999999999999999999999999999999999876 56899999998764
Q ss_pred cc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHH
Q 001507 768 QE---T-FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 843 (1065)
Q Consensus 768 ~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 843 (1065)
.. . .++.+||++|++.+++.+||.||+.|.... .....++++++++.+++.+..+..+ ..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 144 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVA 144 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHH
Confidence 21 1 234689999999999999999999875311 1233456788999999987766654 579999
Q ss_pred HHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 844 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 844 qrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|. +|++++.|
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~-~G~i~~~g 222 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMR-DGTIALSG 222 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEec
Confidence 999999999999999999999999999999999999999999878999999999986 5678899999998 47999998
Q ss_pred CCCC
Q 001507 924 PLGS 927 (1065)
Q Consensus 924 ~~~~ 927 (1065)
+..+
T Consensus 223 ~~~~ 226 (510)
T PRK15439 223 KTAD 226 (510)
T ss_pred ChHH
Confidence 7643
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=323.31 Aligned_cols=204 Identities=24% Similarity=0.409 Sum_probs=164.8
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCC--CCCCH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTV 790 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~--~~ltv 790 (1065)
+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++.+. ...++
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 579999999999999999999999999999999999876 56899999998764332334699999997652 23478
Q ss_pred HHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 791 LESLLFSAWLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 791 ~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
+|++.++..... ..........+.++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+|
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~ 172 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFLARAIAQQGQVILLDEPFTG 172 (272)
T ss_pred hhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 888865321000 000111223445778899999987766644 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|+..
T Consensus 173 LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~ 226 (272)
T PRK15056 173 VDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTE 226 (272)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 9999999999999999877999999999986 577889998766 4 7999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=331.16 Aligned_cols=219 Identities=25% Similarity=0.343 Sum_probs=175.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++. .+.+|+|+||+|++||+++|+||||||||||+++|+|.+.|....+|+|.++|.++.... .++.++
T Consensus 9 ~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 9 KHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 4555554321 245999999999999999999999999999999999999775212399999999875432 235799
Q ss_pred EEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 84 YVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 84 yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
|++|++. .++..||+||+.|.....+.. ..+..++++++++.+||
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L 133 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGM 133 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCC
Confidence 9999974 577889999998754321100 00112347788999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ +.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++
T Consensus 134 ~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~ 207 (282)
T PRK13640 134 LDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA 207 (282)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH
Confidence 87666554 579999999999999999999999999999999999999999999998753 356777789999988
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
..||++++|++|++++.|+++++.
T Consensus 208 -~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 208 -NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred -HhCCEEEEEECCEEEEeCCHHHHh
Confidence 479999999999999999987764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=326.07 Aligned_cols=220 Identities=24% Similarity=0.321 Sum_probs=172.4
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.+++ +.+|+|+||++++||+++|+|||||||||||++|+|.+. +..+.+|+|.++|+++... ..
T Consensus 9 ~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 9 ARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence 3455555532 469999999999999999999999999999999999864 1113599999999877431 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ .||+||+.++....+... . ...+..++++++
T Consensus 86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 131 (253)
T PRK14242 86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKD--K-------------------------------AYLAERVERSLR 131 (253)
T ss_pred hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCC--H-------------------------------HHHHHHHHHHHH
Confidence 457999999988787 599999988643221100 0 001123667788
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||.+...+.. ++.++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|++++|+
T Consensus 132 ~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tvii~tH~ 207 (253)
T PRK14242 132 HAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA---RYTIIIVTHN 207 (253)
T ss_pred HcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCeEEEEEec
Confidence 888854221111 234567999999999999999999999999999999999999999999998842 3677779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
.+++.++||++++|++|++++.|+++++
T Consensus 208 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 208 MQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999987765
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=318.08 Aligned_cols=197 Identities=22% Similarity=0.347 Sum_probs=161.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~l 788 (1065)
++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 95 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D 95 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c
Confidence 4579999999999999999999999999999999999876 568999999986532 234567999999988876 4
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
|++||+.+....+.. . ...+.++++++.+++. ...+.. +..||||||||++|||+|+.+|++|+|||||
T Consensus 96 tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 96 TVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred cHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999875433211 1 1124567899999985 344443 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 868 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
+|||+.++..+.+.|+++.++ |.|||++||+++ .+ ..+|++++|.+.+..+.+|
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhh
Confidence 999999999999999998754 899999999986 34 5699999996444444444
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=320.44 Aligned_cols=207 Identities=26% Similarity=0.283 Sum_probs=166.1
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 457999999999999999999999999999999999975321 247999999987642 234567999999998
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++. ||+||+.|....+.. ......++.++++++.+++.+...... ......||||||||++|||+|+.+|++++|
T Consensus 98 ~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllL 173 (253)
T PRK14261 98 PFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILM 173 (253)
T ss_pred cCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 999999987544321 122233456778888888743111111 112357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+ +|+++..|+.
T Consensus 174 DEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 232 (253)
T PRK14261 174 DEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY-LGKLIEFDKT 232 (253)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE-CCEEEEcCCH
Confidence 999999999999999999999875 689999999986 4667899999998 5899988875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=319.31 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=172.3
Q ss_pred cccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEEccccccCCCCCHHH
Q 001507 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 99 (1065)
Q Consensus 21 iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e 99 (1065)
+|+|+|++|++||+++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .++.++|++|++.+++.+|+.|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999998775 999999998775432 2457999999999898999999
Q ss_pred HHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCc
Q 001507 100 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 179 (1065)
Q Consensus 100 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 179 (1065)
|+.++....+. .. ......+.++++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~--~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKV--DK--------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCC--CH--------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 99876432110 00 001123677889999987776655 4699
Q ss_pred hhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEE
Q 001507 180 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 259 (1065)
Q Consensus 180 GGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~ 259 (1065)
||||||++||||++.+|++++|||||+|||+.++.++++.|++++... ++++++++|+.+++.+++|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986532 5677779999999999999999999999999
Q ss_pred EcCcchHH
Q 001507 260 QGPRVSVL 267 (1065)
Q Consensus 260 ~G~~~~~~ 267 (1065)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99877654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=317.45 Aligned_cols=215 Identities=25% Similarity=0.333 Sum_probs=177.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv 85 (1065)
+++++.++. +.+++|+|+++++|++++|+|+||||||||+++|+|.++|. +|+|.++|.++.... .++.++|+
T Consensus 4 ~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 4 ENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred EeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEE
Confidence 344444432 46999999999999999999999999999999999999875 899999998775432 24579999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+++.+|++||+.++....+.. . ...+..++.+++.+||.+.
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~ 123 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLP--K--------------------------------AEIKERVAEALDLVQLEGY 123 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchh
Confidence 99999888899999998764432100 0 0012236788999999877
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ ..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ .+.+|++++|+.+++.++
T Consensus 124 ~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sh~~~~~~~~ 197 (232)
T cd03300 124 ANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE-LGITFVFVTHDQEEALTM 197 (232)
T ss_pred hcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHh
Confidence 76554 469999999999999999999999999999999999999999999998753 256777789999999999
Q ss_pred cccEEEecCCcEEEEcCcchHH
Q 001507 246 FDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
||++++|++|++++.|+..++.
T Consensus 198 ~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 198 SDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred cCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=323.64 Aligned_cols=218 Identities=20% Similarity=0.279 Sum_probs=171.1
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECCc
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGY 764 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~g~ 764 (1065)
+.++|+++.+ +++.+|+|+||++++||+++|+||||||||||+++|+|... + .+.+|+|.++|.
T Consensus 22 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 88 (268)
T PRK14248 22 LEVKDLSIYY-------------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88 (268)
T ss_pred EEEEEEEEEe-------------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence 5667776544 23579999999999999999999999999999999999642 1 146899999998
Q ss_pred cCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCC
Q 001507 765 PKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 839 (1065)
Q Consensus 765 ~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 839 (1065)
++.. ..+++.++|++|++.+++. |++||+.+...... .......++.++++++.+++........ ...+..
T Consensus 89 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 164 (268)
T PRK14248 89 NILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSALS 164 (268)
T ss_pred EcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCccc
Confidence 7642 1345679999999888875 99999987643221 1112223445677888888742110111 112357
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEE
Q 001507 840 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 919 (1065)
Q Consensus 840 lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~ 919 (1065)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +|++
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~-~G~i 241 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL-NGDL 241 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999999864 689999999986 5778899999998 5899
Q ss_pred EEeCCC
Q 001507 920 IYAGPL 925 (1065)
Q Consensus 920 ~~~g~~ 925 (1065)
++.|+.
T Consensus 242 ~~~~~~ 247 (268)
T PRK14248 242 VEYDQT 247 (268)
T ss_pred EEeCCH
Confidence 998874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=318.58 Aligned_cols=202 Identities=21% Similarity=0.350 Sum_probs=169.5
Q ss_pred cCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEEccccccCCCCCHHHHH
Q 001507 23 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETL 101 (1065)
Q Consensus 23 ~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTv~e~l 101 (1065)
.|+||++++|++++|+||||||||||+++|+|.+.|. +|+|.++|.++.... .++.++|++|++.+++.+|+.||+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHH
Confidence 3899999999999999999999999999999998775 999999998765432 235799999999889989999999
Q ss_pred HHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCcccccCchh
Q 001507 102 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 181 (1065)
Q Consensus 102 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 181 (1065)
.++.... .. .. ...+..++++++.+||++..++.+ +.||||
T Consensus 93 ~~~~~~~-~~--~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 133 (232)
T PRK10771 93 GLGLNPG-LK--LN-------------------------------AAQREKLHAIARQMGIEDLLARLP-----GQLSGG 133 (232)
T ss_pred hcccccc-cC--CC-------------------------------HHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHH
Confidence 8753210 00 00 001223788899999987776655 469999
Q ss_pred hhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEecCCcEEEEc
Q 001507 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 182 qkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G 261 (1065)
||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+. .++++++++|+.+++.+++|++++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQE-RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998653 2567777999999999999999999999999999
Q ss_pred CcchHH
Q 001507 262 PRVSVL 267 (1065)
Q Consensus 262 ~~~~~~ 267 (1065)
+.+++.
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 887664
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=352.96 Aligned_cols=210 Identities=22% Similarity=0.370 Sum_probs=173.6
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc----cccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+||||++++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+|||+|++.+++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 34679999999999999999999999999999999999876323589999999876431 12456999999998899
Q ss_pred CCCHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHcCCCccc-cCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q 001507 787 GLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 864 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lD 864 (1065)
.+||.||+.+........ ....+...++++++++.+++.+.. +.. +..|||||||||+|||||+.+|++||||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllLD 166 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLILD 166 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 999999998864322111 112233445678899999997654 232 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|||+|||+.++..+.+.|++++++|+|||++||+++ .+...||++++|.+ |++++.|+...
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 167 EPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 999999999999999999999878999999999986 57778999999985 78998887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=352.54 Aligned_cols=208 Identities=25% Similarity=0.333 Sum_probs=174.4
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..+++.+||++|++.+++
T Consensus 9 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 34679999999999999999999999999999999999876 568999999987642 123467999999998889
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+||+||+.+................++++++++.+++.+..+..+ ..|||||||||+|||||+.+|++||||||
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999987532110100122333456889999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|. +|+++..|+...
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~-~G~i~~~~~~~~ 220 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILR-DGQWIATQPLAG 220 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEeecChhh
Confidence 9999999999999999999878999999999986 5677899999998 589999988654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=328.63 Aligned_cols=218 Identities=20% Similarity=0.275 Sum_probs=176.9
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.+++.....+|+|+|+++++||+++|+|+||||||||+++|+|.++|. +|+|.++|.++.... .++.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcce
Confidence 455666654333346999999999999999999999999999999999999775 999999998875422 24579
Q ss_pred EEEccccc-cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 83 AYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 83 ~yv~Q~~~-~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
+|++|++. .++..||.||+.++....+.. . ......++.+++.+|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~ 129 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVN 129 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCC
Confidence 99999974 577789999998754321100 0 001123678899999
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
|.+..++.+ ..||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++. .+++|++++|+.++
T Consensus 130 l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tiil~sH~~~~ 203 (277)
T PRK13642 130 MLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK-YQLTVLSITHDLDE 203 (277)
T ss_pred CHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 987666544 469999999999999999999999999999999999999999999988753 35677779999999
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+. .+|++++|++|++++.|+++++.
T Consensus 204 ~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 204 AA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 86 59999999999999999987764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=322.07 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=169.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc------ccccceEEEEcCCC--C
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--I 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~~~v~q~~--~ 783 (1065)
++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 3679999999999999999999999999999999999876 568999999987532 12456799999997 3
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
+.+..|+.|++.+..... .........+.++++++.+++. ...+.. ...||||||||++|||+|+.+|++||
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEE
Confidence 567789999987643211 1122334455688999999986 455543 35799999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++++|. +|++++.|+..+
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 238 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NGQIVETQPVGD 238 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CCEEeeeCChhh
Confidence 99999999999999999999998765 899999999986 5667899999998 589999987643
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=318.36 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=167.2
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCHH
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 791 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv~ 791 (1065)
+|+|+||++++||+++|+||||||||||+++|+|..+ . +|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999999999999999999999999874 3 7999999987642 22345689999998888889999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHh-------CCCceeec
Q 001507 792 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 864 (1065)
Q Consensus 792 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~-------~p~il~lD 864 (1065)
||+.+..... .......++++++++.+++.+..+... ..||||||||++|||||+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 122233456789999999977666543 5799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 865 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 865 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||+|||+.++..+.+.|++++++|.|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~-~G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLK-QGKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999877999999999986 5778899999998 5899998875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=325.45 Aligned_cols=220 Identities=25% Similarity=0.353 Sum_probs=177.4
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++ +..+|+|+||++++|++++|+|||||||||||++|+|.++++ +|+|.++|.++.... .++.+
T Consensus 10 i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 10 GEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhhe
Confidence 345555553 246999999999999999999999999999999999998775 999999998765432 23469
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++..||+||+.++..... . .... . .+.....++++++.+||
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~-~-~~~~--------------~--------------~~~~~~~~~~~l~~~~l 133 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQ-P-LFTR--------------W--------------RKEDEEAVTKAMQATGI 133 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCccccc-c-cccC--------------C--------------CHHHHHHHHHHHHHcCC
Confidence 999999988888999999987421000 0 0000 0 00012247788999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ +.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. .+++|++++|+.+++
T Consensus 134 ~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~ 207 (265)
T PRK10253 134 THLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQA 207 (265)
T ss_pred HHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence 87666544 569999999999999999999999999999999999999999999998653 356777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.++||++++|++|++++.|+++++.
T Consensus 208 ~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 208 CRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999887654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=332.14 Aligned_cols=224 Identities=25% Similarity=0.375 Sum_probs=187.9
Q ss_pred ccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEc
Q 001507 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCE 779 (1065)
Q Consensus 704 ~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~ 779 (1065)
++.++.++..++|+||||++++||++||+|.||||||||+|+|+|..+ +++|+|.+||++... .....-|+.|.
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred ecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 334445677899999999999999999999999999999999999877 679999999987642 23445689999
Q ss_pred CCCCCCCCCCHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCC
Q 001507 780 QNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 858 (1065)
Q Consensus 780 q~~~~~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p 858 (1065)
|+..+.|++||.||+.++...+.+ .-.......++..++++.+++....+..+ .+||+||||.|.|||||..++
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999876543321 22445666677889999999863355544 579999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC-CC-chhHHHHHH
Q 001507 859 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL-GS-KSCELIKYF 936 (1065)
Q Consensus 859 ~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~-~~-~~~~~~~~~ 936 (1065)
+||+||||||.|+......+.+.+++++++|.+||++||+++ ++++.|||+.||.+ |+++...+. .+ ..++++...
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRLM 242 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999997 89999999999985 788888883 43 334455443
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=321.66 Aligned_cols=196 Identities=26% Similarity=0.414 Sum_probs=154.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 469999999999999999999999999999999999876 568999999987532 234567999999987764 69
Q ss_pred HHHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 790 VLESLLFSAWLRLPSEIELETQR-----AFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
|.||+.+... ........ ...++.++.+ ++....+. .+..|||||||||+|||||+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999986421 11111100 0112223332 22222222 246899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|++++ +|+|||++||+++ .+ ..+|++++|. +|++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~-~G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVME-KGRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEE-CCEEEEEcCH
Confidence 999999999999999999999986 4899999999986 34 5699999998 5899998875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=318.78 Aligned_cols=209 Identities=24% Similarity=0.323 Sum_probs=166.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccc-eEEEEcCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFAR-ISGYCEQNDIHSPG 787 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~-~~~~v~q~~~~~~~ 787 (1065)
++.+|+|+||++++||++||+||||||||||+++|+|.....+.+|+|.++|.++.. ...++ .++|++|++.+++.
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 356999999999999999999999999999999999973111568999999987643 12222 47899999999999
Q ss_pred CCHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 788 LTVLESLLFSAWLRLP----SEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
+|+.+++.+....... ......+..++++++++.+++. ...+.... ..|||||||||+|||||+.+|+||+
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~lll 174 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAI 174 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999875432110 0111222335677888999886 34444321 2599999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEeCCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|++++.|+++
T Consensus 175 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~G~i~~~~~~~ 237 (252)
T CHL00131 175 LDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-NGKIIKTGDAE 237 (252)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-CCEEEEecChh
Confidence 99999999999999999999999877999999999976 34444 79999997 58999998763
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=276.81 Aligned_cols=207 Identities=26% Similarity=0.360 Sum_probs=176.0
Q ss_pred ccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC------c---ccccceEEEE
Q 001507 708 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------Q---ETFARISGYC 778 (1065)
Q Consensus 708 ~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~------~---~~~~~~~~~v 778 (1065)
..++..++|.||+++.+.||.+.++||||||||||++.|.-+.. +.+|+..|-|...+ . ..+|+.+|+|
T Consensus 10 ~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmv 87 (242)
T COG4161 10 CFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87 (242)
T ss_pred cccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHhhhhh
Confidence 34567789999999999999999999999999999999986655 46899888775321 1 2467789999
Q ss_pred cCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCC
Q 001507 779 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 858 (1065)
Q Consensus 779 ~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p 858 (1065)
+|...++|.+||.||+.-+.. +. ...++++.+.+..++++.+.|.+.+|+.. -.|||||+|||+|||||+.+|
T Consensus 88 fqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 88 FQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred hhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhccccccccCc-----eecccchhhhHHHHHHHhcCC
Confidence 999999999999999975432 21 23455666777889999999999999754 369999999999999999999
Q ss_pred CceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 859 SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 859 ~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
++|++||||+.|||+-..+++++|++++..|.|=+++||..+. ....+.+++.|. .|+++..|+.
T Consensus 161 qvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme-~g~ive~g~a 225 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYME-NGHIVEQGDA 225 (242)
T ss_pred cEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeee-cCeeEeecch
Confidence 9999999999999999999999999999999999999998763 456689999998 5899999974
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=323.40 Aligned_cols=220 Identities=20% Similarity=0.272 Sum_probs=172.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +..+.+|+|.++|.++... ..+
T Consensus 7 ~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 7 RDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 44555443 2469999999999999999999999999999999999732 2112489999999887532 123
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.++....+... . ...+..++++++.
T Consensus 84 ~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~ 129 (250)
T PRK14245 84 KNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKD--N-------------------------------AFIRQRVEETLKG 129 (250)
T ss_pred hheEEEecCCccCc-ccHHHHHHHHHHHcCCCc--H-------------------------------HHHHHHHHHHHHH
Confidence 56999999988776 699999987643221000 0 0011236778888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||.+...+.. +..+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+.
T Consensus 130 ~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiivtH~~ 205 (250)
T PRK14245 130 AALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K--DYTIVIVTHNM 205 (250)
T ss_pred cCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCCH
Confidence 99864321111 23355799999999999999999999999999999999999999999999984 2 36677799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++.++||++++|++|++++.|+++++.
T Consensus 206 ~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 206 QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999988774
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=351.98 Aligned_cols=205 Identities=27% Similarity=0.342 Sum_probs=171.5
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~~~~~ 786 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 15 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK11288 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVP 92 (501)
T ss_pred CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccC
Confidence 34579999999999999999999999999999999999876 568999999987642 124567999999998999
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+||.||+.+.............+..++++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+|||||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 9999999988532111111123344566889999999976655543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCC
Q 001507 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~ 924 (1065)
|+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|.+ |+++..++
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 168 TSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 9999999999999999999877999999999986 56788999999985 78887665
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=322.87 Aligned_cols=222 Identities=23% Similarity=0.340 Sum_probs=173.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++. ..+|+|+||++++||+++|+|||||||||||++|+|.+.|.+ +.+|+|.++|.++... ..
T Consensus 7 i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 7 VKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 3455555432 469999999999999999999999999999999999986421 2599999999876321 22
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++.+||+||+.++....+... . ...++.++++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 130 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRN--K-------------------------------KDLDELVEKSLR 130 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCC--H-------------------------------HHHHHHHHHHHH
Confidence 4579999999988999999999987643221000 0 001223677888
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||........ +..+.+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|++++|+
T Consensus 131 ~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~ 206 (258)
T PRK14241 131 GANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHN 206 (258)
T ss_pred HcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecC
Confidence 888842111111 233457999999999999999999999999999999999999999999998853 3 577779999
Q ss_pred chHHHhhcccEEEec------CCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLS------EGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~------~G~i~~~G~~~~~~ 267 (1065)
.+++.+++|++++|+ +|++++.|+++++.
T Consensus 207 ~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 207 MQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred HHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 999999999999996 79999999887763
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=318.26 Aligned_cols=207 Identities=22% Similarity=0.292 Sum_probs=164.1
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||++++||++||+||||||||||+++|+|..+ + .+.+|+|.++|.++.. ...++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 4579999999999999999999999999999999999753 1 1248999999987632 234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|++||+.+....+... ..+...+.+.+.++.+++........ ...+..||||||||++|||+|+.+|++|+|
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llll 172 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQRVCIARVLAVKPDVILL 172 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 69999998865433211 12222345667777777642111111 112358999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.+|++++|+ +|+++..|++
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 231 (252)
T PRK14255 173 DEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL-TGNLIEFADT 231 (252)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEeCCH
Confidence 999999999999999999999865 589999999986 5778899999998 5899988864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=324.96 Aligned_cols=221 Identities=21% Similarity=0.309 Sum_probs=173.2
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ +..+|+|+|++|++|++++|+|||||||||||++|+|.+.+. .+.+|+|.++|.++... ..+
T Consensus 23 ~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~ 99 (267)
T PRK14235 23 RDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99 (267)
T ss_pred EeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHh
Confidence 44555543 246999999999999999999999999999999999998641 13599999999887531 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++. ||.||+.|+...++..... ......++++++.
T Consensus 100 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~ 146 (267)
T PRK14235 100 ARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSK--------------------------------AELDEIVETSLRK 146 (267)
T ss_pred hceEEEecCCCCCCC-cHHHHHHHHHHhcccccch--------------------------------HHHHHHHHHHHHH
Confidence 579999999887874 9999998865322110000 0011236778888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||.+...... ++.++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.+|++++|+.
T Consensus 147 ~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~---~~tiiivtH~~ 222 (267)
T PRK14235 147 AGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ---NYTIVIVTHSM 222 (267)
T ss_pred cCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc---CCeEEEEEcCH
Confidence 99864211111 223457999999999999999999999999999999999999999999998853 35777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++..+||++++|++|++++.|+.+++.
T Consensus 223 ~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 223 QQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999877663
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=292.19 Aligned_cols=219 Identities=26% Similarity=0.373 Sum_probs=185.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
+++++..+++ +.+|+|+|++|++|.+|+++|||||||||||.+++.+++.+ +|+|.++|.++.... ..+.+
T Consensus 4 i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 4 IENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred ehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHH
Confidence 4566665543 57999999999999999999999999999999999999876 999999999886543 34677
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+..-|+...-..+||+|-+.|+.--... +.+-. +.+..+++.++.|+|
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSq-----------------GRlt~---------------eD~~~I~~aieyl~L 125 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQ-----------------GRLTK---------------EDRRIINEAIEYLHL 125 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccC-----------------CCCch---------------HHHHHHHHHHHHhcc
Confidence 8899998888899999999996321111 11111 123458999999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..|.. ..+||||||||.-||+.++.+.+.++||||.+.||...+..+++.|++++++.++++|+ +.||.+++
T Consensus 126 ~~l~dry-----Ld~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfA 199 (252)
T COG4604 126 EDLSDRY-----LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFA 199 (252)
T ss_pred cchHHHh-----HHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHH
Confidence 9887655 45699999999999999999999999999999999999999999999999988666555 67999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
..++|+|+-|.+|+++.+|+++++.+
T Consensus 200 S~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 200 SCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred HhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999998853
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=323.34 Aligned_cols=218 Identities=25% Similarity=0.363 Sum_probs=175.9
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++ +..+|+|+||++++|++++|+|+||||||||+++|+|++++. +|+|.++|.++.... .++.+
T Consensus 5 ~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 5 TENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhhe
Confidence 345555543 246999999999999999999999999999999999998775 999999998764321 23569
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+|++|++.+++.+||+||+.++..... ..+.. . .......++++++.+||
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~--~~~~~-------------~---------------~~~~~~~~~~~l~~~~l 128 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWL--SLWGR-------------L---------------SAEDNARVNQAMEQTRI 128 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhh--hhccC-------------C---------------CHHHHHHHHHHHHHcCC
Confidence 999999888888999999987521000 00000 0 00012236788999999
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
.+..++.+ ..|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++.+. +++|++++|+.+++
T Consensus 129 ~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~ 201 (255)
T PRK11231 129 NHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDLNQA 201 (255)
T ss_pred HHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHH
Confidence 87766654 469999999999999999999999999999999999999999999988642 56777799999999
Q ss_pred HhhcccEEEecCCcEEEEcCcchH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
.+++|++++|++|+++..|+.+++
T Consensus 202 ~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 202 SRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999999987765
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=324.26 Aligned_cols=221 Identities=19% Similarity=0.313 Sum_probs=172.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCC--CCceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~--~~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++ .+.+|+|+||+|++||+++|+||||||||||+++|+|.+.+ ..+.+|+|.++|.++... ..
T Consensus 15 i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 15 INGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 345555543 24699999999999999999999999999999999999863 212489999999886421 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++. ||+||+.|.....+... + .+....++++++
T Consensus 92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 137 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKN--K-------------------------------KKLQEIVEKSLK 137 (259)
T ss_pred hhceEEEecCCccccc-CHHHHHHhHHHhcCCCC--H-------------------------------HHHHHHHHHHHH
Confidence 4569999999988875 99999987643221000 0 001123667788
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||.+...... +...++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.. +.++++++|+
T Consensus 138 ~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~ 213 (259)
T PRK14274 138 DVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHN 213 (259)
T ss_pred HcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcC
Confidence 888853211111 234457999999999999999999999999999999999999999999998853 3567779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.++||++++|++|+++..|+++++.
T Consensus 214 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 214 MQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999988763
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=363.13 Aligned_cols=209 Identities=26% Similarity=0.411 Sum_probs=173.4
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++... +++++|+|+|++|+|||++||+||||||||||+++|+|.. + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 588888875431 2357999999999999999999999999999999999987 3 489999999876
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccCcccCCC
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 836 (1065)
.. ..+++.++||+|++.++.. |++||+.++. + +.+. +.++++++..++.+. .|+.+|..
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~- 482 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ- 482 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC-
Confidence 43 5678899999999998875 9999998752 1 2222 345667776666442 35556544
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
..+||||||||++|||||+++|+||+||||||+||++++..|++.|+++. +++|+|++||+++ ....+|+|++|+ +
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~-~ 558 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ-D 558 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-C
Confidence 35799999999999999999999999999999999999999999999875 5899999999985 567799999998 5
Q ss_pred cEEEEeCCC
Q 001507 917 GELIYAGPL 925 (1065)
Q Consensus 917 g~~~~~g~~ 925 (1065)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 899999974
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=319.51 Aligned_cols=218 Identities=22% Similarity=0.266 Sum_probs=171.3
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g 763 (1065)
-+.++|+++.+ +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 46667776544 3457999999999999999999999999999999999975421 2589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 838 (1065)
.++.. ..+++.++|++|++.+++. |+.||+.+....+. .. ....+.++++++.+++........ ...+.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 160 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGT 160 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHh-cCCcc
Confidence 87632 2345679999999888764 99999987643321 11 112344567778777642111111 11235
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe----
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK---- 914 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~---- 914 (1065)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.
T Consensus 161 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~ 238 (274)
T PRK14265 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEID 238 (274)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999864 799999999986 5778899999997
Q ss_pred ----cCcEEEEeCCC
Q 001507 915 ----RGGELIYAGPL 925 (1065)
Q Consensus 915 ----~gg~~~~~g~~ 925 (1065)
+.|++++.|+.
T Consensus 239 ~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 239 EYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=324.05 Aligned_cols=220 Identities=20% Similarity=0.276 Sum_probs=172.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ +..+|+|+|++|++||+++|+||||||||||+++|+|.+. |..+.+|+|.++|.++... ..+
T Consensus 17 ~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~ 93 (260)
T PRK10744 17 RNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLR 93 (260)
T ss_pred EEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHh
Confidence 44555443 2469999999999999999999999999999999999986 2223589999999886421 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.+....... .+ . .....+++++++.
T Consensus 94 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~---~~----------------~--------------~~~~~~~~~~l~~ 139 (260)
T PRK10744 94 AKVGMVFQKPTPFP-MSIYDNIAFGVRLFEK---LS----------------R--------------AEMDERVEWALTK 139 (260)
T ss_pred cceEEEecCCccCc-CcHHHHHhhhHhhcCC---CC----------------H--------------HHHHHHHHHHHHH
Confidence 57999999988777 8999999876432100 00 0 0011236778888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||.+...... ++...+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|++++|+.
T Consensus 140 ~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~ 215 (260)
T PRK10744 140 AALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNM 215 (260)
T ss_pred cCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCH
Confidence 88743211111 223457999999999999999999999999999999999999999999998842 35777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++..++|++++|++|+++..|+.+++.
T Consensus 216 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 216 QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999887764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=317.19 Aligned_cols=215 Identities=27% Similarity=0.375 Sum_probs=176.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC-CCceEEEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~-~~~~~~yv 85 (1065)
+++++.++ .+++|+|+|+++.+||+++|+||||||||||+++|+|.+.+. +|+|.++|.++.... .++.++|+
T Consensus 4 ~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 4 ANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred EEEEEEEC---CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEE
Confidence 34555543 246999999999999999999999999999999999998765 999999998875432 24579999
Q ss_pred ccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCccc
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 165 (1065)
+|++.+++..|++||+.+.....+... ......++++++.++|.+.
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~ 123 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGL 123 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhH
Confidence 999988888999999987643221000 0001236788899999766
Q ss_pred ccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhh
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~ 245 (1065)
.++.+ +.||||||||++||||++.+|++++|||||+|||+.++..+.+.|++++.. .+.+|++++|+.+++.++
T Consensus 124 ~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~ 197 (237)
T TIGR00968 124 GDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEV 197 (237)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhh
Confidence 66554 469999999999999999999999999999999999999999999987653 356777789999999999
Q ss_pred cccEEEecCCcEEEEcCcchHH
Q 001507 246 FDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 246 ~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
||++++|++|++++.|+.+++.
T Consensus 198 ~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 198 ADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred cCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999987764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=313.63 Aligned_cols=203 Identities=25% Similarity=0.376 Sum_probs=166.5
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCC-------CCCc
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPR 80 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~-------~~~~ 80 (1065)
++++.+++ +.+ |+||++++ |+++|+||||||||||+++|+|.+.|+ +|+|.++|.++... ..++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhh
Confidence 34555543 234 99999999 999999999999999999999999775 99999999876421 1245
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++.+|++||+.+..... .. . ..+..++++++.+
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~---~----------------------------~~~~~~~~~l~~~ 119 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRK-----RN---R----------------------------EDRISVDELLDLL 119 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhC-----CH---H----------------------------HHHHHHHHHHHHc
Confidence 7999999999898999999998753210 00 0 0012367789999
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||++..++.+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|++++++ .+++|++++|+.+
T Consensus 120 ~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~ 193 (214)
T cd03297 120 GLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN-LNIPVIFVTHDLS 193 (214)
T ss_pred CCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEecCHH
Confidence 9987665544 469999999999999999999999999999999999999999999998753 3567777999999
Q ss_pred HHHhhcccEEEecCCcEEEEc
Q 001507 241 EAYELFDDVILLSEGQIVYQG 261 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G 261 (1065)
++..++|++++|++|++++.|
T Consensus 194 ~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 194 EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.32 Aligned_cols=217 Identities=27% Similarity=0.398 Sum_probs=174.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++ +..+|+|+||++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++
T Consensus 5 ~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 5 SRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred EeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheE
Confidence 34555443 246999999999999999999999999999999999998775 999999998765432 234689
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
|++|++.+++.+||+||+.++..... ..+ . .+ .......+.++++.+||.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-------------~-~~--------------~~~~~~~~~~~l~~~~l~ 128 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHR--SLW-------------A-GD--------------SPHDAAVVDRALARTELS 128 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhh--hhc-------------c-CC--------------CHHHHHHHHHHHHHcCcH
Confidence 99999877788999999987421000 000 0 00 000122477889999998
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
+..++.+ ..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ .+++|++++|+.+++.
T Consensus 129 ~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 129 HLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA--TGVTVVAALHDLNLAA 201 (256)
T ss_pred hhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHH
Confidence 7666654 46999999999999999999999999999999999999999999998864 2567888999999999
Q ss_pred hhcccEEEecCCcEEEEcCcchH
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
++||+|++|++|++++.|+.+++
T Consensus 202 ~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 202 SYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999987765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=321.32 Aligned_cols=218 Identities=22% Similarity=0.257 Sum_probs=170.5
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~g 763 (1065)
-+.++|+++.+ +++.+|+|+||+|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWY-------------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 36677776554 23469999999999999999999999999999999999764 1 13689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCC
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGI 837 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 837 (1065)
.++.. ..+++.++|++|++.+++ .|++||+.+....+.. .......+.+.++++.+++.. +.+.. ...+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~ 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRL--HDNA 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHH--hcCc
Confidence 87632 234567999999988877 4999999886533211 112222344567777765432 11111 1123
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCc
Q 001507 838 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917 (1065)
Q Consensus 838 ~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg 917 (1065)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|+ +|
T Consensus 166 ~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~-~G 242 (271)
T PRK14238 166 YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL-NG 242 (271)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CC
Confidence 68999999999999999999999999999999999999999999999865 799999999986 5677899999998 58
Q ss_pred EEEEeCCC
Q 001507 918 ELIYAGPL 925 (1065)
Q Consensus 918 ~~~~~g~~ 925 (1065)
+++..|+.
T Consensus 243 ~i~~~g~~ 250 (271)
T PRK14238 243 YVNEYDDT 250 (271)
T ss_pred EEEEeCCH
Confidence 99998874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=372.16 Aligned_cols=217 Identities=25% Similarity=0.330 Sum_probs=171.1
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.++.. +.++|+|+|++|++||.++|+|+||||||||+|+|+|++.|. +|+|.+||.++.+.. .++.+
T Consensus 454 ~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 454 VDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred EEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhcc
Confidence 34556665432 356999999999999999999999999999999999999876 999999999987653 35789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+||+|++.+|+ .|++|||.++.. ...+.+.++++. .. +++.++ .+
T Consensus 530 ~~v~Q~~~lf~-gTI~eNi~~~~~-----~~~e~i~~al~~------------------a~---------l~~~i~--~l 574 (686)
T TIGR03797 530 GVVLQNGRLMS-GSIFENIAGGAP-----LTLDEAWEAARM------------------AG---------LAEDIR--AM 574 (686)
T ss_pred EEEccCCccCc-ccHHHHHhcCCC-----CCHHHHHHHHHH------------------cC---------cHHHHH--hc
Confidence 99999999876 599999987421 000111111100 00 111111 35
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++..||.+|+.+ .+||||||||++||||++++|+|++||||||+||+.+..++.+.|+++ + .|+++++|..+.+
T Consensus 575 p~G~dt~ige~G-~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~-~T~IiItHr~~~i 648 (686)
T TIGR03797 575 PMGMHTVISEGG-GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----K-VTRIVIAHRLSTI 648 (686)
T ss_pred cccccccccCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----C-CeEEEEecChHHH
Confidence 667899999865 579999999999999999999999999999999999999999999875 2 3566678877655
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+.+|+|++|++|++++.|+++++.+
T Consensus 649 -~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 649 -RNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred -HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5699999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=311.15 Aligned_cols=187 Identities=28% Similarity=0.353 Sum_probs=157.2
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCH
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
+++.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+......++.++|++|++.+++.+|+
T Consensus 13 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv 90 (207)
T PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTV 90 (207)
T ss_pred CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcH
Confidence 34579999999999999999999999999999999999876 5689999999875322256678999999888889999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+||+.+....+. .. .+.++++++.+++.+..+... +.||||||||++|||+|+.+|++|+|||||+||
T Consensus 91 ~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 91 AENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred HHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999987543321 11 134788999999977655443 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
|+.+...+.+.|++++++|+|||++||+++ ++. . |+++.+.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 999999999999998777999999999976 343 3 8887774
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.70 Aligned_cols=210 Identities=20% Similarity=0.285 Sum_probs=169.7
Q ss_pred EEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCC
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~ 767 (1065)
+.++|+++.++. +...+|+|+||+|++||+++|+||||||||||+++|+|..+ .+|+|.+||.++.
T Consensus 3 i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 456666655421 23469999999999999999999999999999999999875 3799999998764
Q ss_pred c---ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccC------CCCC
Q 001507 768 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGIN 838 (1065)
Q Consensus 768 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~~ 838 (1065)
. ..+++.++||+|++.+++. |++||+.... ... .+.++++++.++|.+..+...+. ....
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 2 3456789999999998875 9999996321 111 23467788888987655543321 1234
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 839 ~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
.||||||||++|||||+.+|+||+|||||++||+.+...+++.|+++. .++|||+++|+++ .+ ..+|++++|+ .|+
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~-~G~ 213 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIE-ENK 213 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEec-CCe
Confidence 699999999999999999999999999999999999999999999874 5899999999985 34 4599999998 589
Q ss_pred EEEeCCCC
Q 001507 919 LIYAGPLG 926 (1065)
Q Consensus 919 ~~~~g~~~ 926 (1065)
+++.|++.
T Consensus 214 i~~~g~~~ 221 (275)
T cd03289 214 VRQYDSIQ 221 (275)
T ss_pred EeecCCHH
Confidence 99999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=323.96 Aligned_cols=220 Identities=23% Similarity=0.302 Sum_probs=174.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ .+++|+|+|+++++||+++|+|||||||||||++|+|.+.|. .+.+|+|.++|.++... ..+
T Consensus 24 ~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 24 KDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred eeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 45555543 356999999999999999999999999999999999998642 13599999999887432 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.++....+... + ...+..+.++++.
T Consensus 101 ~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~ 146 (267)
T PRK14237 101 KHIGMVFQRPNPFA-KSIYENITFALERAGVKD--K-------------------------------KVLDEIVETSLKQ 146 (267)
T ss_pred cceEEEecCCcccc-ccHHHHHHhHHHhcCCCC--H-------------------------------HHHHHHHHHHHHH
Confidence 57999999988777 599999988643211000 0 0012236778888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
++|.+..+... ++.++.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ +.+|++++|+.
T Consensus 147 ~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 222 (267)
T PRK14237 147 AALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNM 222 (267)
T ss_pred cCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCH
Confidence 88854322222 234567999999999999999999999999999999999999999999998842 36777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++.++||++++|++|++++.|+++++.
T Consensus 223 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 223 QQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999987763
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=332.80 Aligned_cols=213 Identities=25% Similarity=0.388 Sum_probs=176.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.+.++ +.++|+|+||++++||.++|+|++|||||||++.|+|-+.|+ +|+|.+||.++.... .+..+
T Consensus 339 ~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 339 LRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHH
Confidence 56788887654 357999999999999999999999999999999999998776 999999999876553 35678
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
++++|...+|. .|+|+||.++...- .++.+-++++..||
T Consensus 415 ~vl~Qr~hlF~-~Tlr~NL~lA~~~A----------------------------------------sDEel~~aL~qvgL 453 (573)
T COG4987 415 SVLTQRVHLFS-GTLRDNLRLANPDA----------------------------------------SDEELWAALQQVGL 453 (573)
T ss_pred hhhccchHHHH-HHHHHHHhhcCCCC----------------------------------------CHHHHHHHHHHcCH
Confidence 99999988776 59999998853210 01123444555554
Q ss_pred c-------ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 163 D-------TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 163 ~-------~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
+ +..||.+|+. .+.||||||||++|||+|++++++++|||||.|||+.|.+++++.+.+.++ ++|++++
T Consensus 454 ~~l~~~~p~gl~t~lge~-G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~v 529 (573)
T COG4987 454 EKLLESAPDGLNTWLGEG-GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMV 529 (573)
T ss_pred HHHHHhChhhhhchhccC-CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEE
Confidence 4 3667889875 457999999999999999999999999999999999999999999987653 5667778
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
||+...+ +.||+|++|++|+++++|.+.++..
T Consensus 530 THrL~~l-e~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 530 THRLRGL-ERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred ecccccH-hhcCEEEEEECCeeeecCCHHhhhc
Confidence 8888766 5679999999999999999998864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=323.38 Aligned_cols=221 Identities=23% Similarity=0.365 Sum_probs=171.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++. +.+++|+||+|++||+++|+||||||||||+++|+|.+.+. .+.+|+|.++|.++... ..
T Consensus 6 ~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 6 VKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred EEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 4556655542 36999999999999999999999999999999999987531 12589999999887531 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ .||+||+.++....+... . ...++.++++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 128 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKD--K-------------------------------KKLDEIVEKSLK 128 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCC--H-------------------------------HHHHHHHHHHHH
Confidence 457999999988777 899999988643221100 0 001123566777
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+++.+...... ++.+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|++++|+
T Consensus 129 ~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~ 204 (250)
T PRK14240 129 GAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHN 204 (250)
T ss_pred HcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeC
Confidence 777643111111 233457999999999999999999999999999999999999999999998842 3577779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++..++|++++|++|+++..|+.+++.
T Consensus 205 ~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 205 MQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999887663
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=318.99 Aligned_cols=203 Identities=27% Similarity=0.304 Sum_probs=164.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc-----CCc---c----cccceEEEEc
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ---E----TFARISGYCE 779 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~-----~~~---~----~~~~~~~~v~ 779 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+ +.. . ..++.++|++
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 3568999999999999999999999999999999999876 568999999976 322 1 1235689999
Q ss_pred CCCC--CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc-cccCcccCCCCCCCCHHHHHHHHHHHHHHh
Q 001507 780 QNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVA 856 (1065)
Q Consensus 780 q~~~--~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~ 856 (1065)
|++. +.+.+|+.||+.+..... .. .......+.++++++.+++.+ ..+.. +..|||||||||+|||||+.
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhc
Confidence 9974 445679999987542211 10 011223456788999999863 44443 35799999999999999999
Q ss_pred CCCceeecCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 857 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 857 ~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ .+...+|++++|. +|++++.|+.
T Consensus 166 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~-~G~i~~~~~~ 233 (253)
T TIGR02323 166 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQ-QGRVVESGLT 233 (253)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEECCH
Confidence 99999999999999999999999999998654 899999999986 5667899999998 5899988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.90 Aligned_cols=221 Identities=23% Similarity=0.332 Sum_probs=172.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|... |..+.+|+|.++|.++... ..
T Consensus 8 ~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 8 VSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 345555543 2469999999999999999999999999999999999853 3222489999999876421 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ .||+||+.++....+... . ...+..++++++
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 130 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKD--K-------------------------------QVLDEAVEKSLK 130 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCc--H-------------------------------HHHHHHHHHHHH
Confidence 457999999998777 899999988643221100 0 001123566777
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+++.....+.. ++.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+
T Consensus 131 ~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~ 206 (252)
T PRK14239 131 GASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRS 206 (252)
T ss_pred HcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECC
Confidence 888743211111 234557999999999999999999999999999999999999999999998853 3 577779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++..+||++++|++|++++.|+.+++.
T Consensus 207 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 207 MQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999987764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=320.54 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=172.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC-ceeEEEEECCccCCCCCC-CceEE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-PRTSA 83 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~-~~~G~i~~~g~~~~~~~~-~~~~~ 83 (1065)
++++++.+ +..+|+|+|+++++||+++|+|+||||||||+++|+|.++|.. +.+|+|.++|.++..... ++.++
T Consensus 7 ~~~l~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 7 LRNIALQA----AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EeCeEEEe----ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 34555544 2369999999999999999999999999999999999987611 149999999988753322 35699
Q ss_pred EEccccc--cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC
Q 001507 84 YVSQQDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 84 yv~Q~~~--~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 161 (1065)
||+|++. +.+..|+.+++.+.+...+.. ..+..++++++.+|
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~ 126 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKP------------------------------------ADDATLTAALEAVG 126 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcC
Confidence 9999974 445679999986643211100 00123678889999
Q ss_pred Ccc---cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 162 LDT---CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 162 L~~---~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
|.+ ..++ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. .+++|++++|+
T Consensus 127 l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~ 200 (254)
T PRK10418 127 LENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHD 200 (254)
T ss_pred CCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecC
Confidence 976 2333 34579999999999999999999999999999999999999999999998654 35677789999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.+++|++++|++|++++.|+.+++.
T Consensus 201 ~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 201 MGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999987764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=316.56 Aligned_cols=203 Identities=26% Similarity=0.334 Sum_probs=165.2
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeE------EEEEECCccCC---cccccceEEEEcCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE------GDIYISGYPKR---QETFARISGYCEQN 781 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~------G~i~i~g~~~~---~~~~~~~~~~v~q~ 781 (1065)
+++.+|+|+||++.+||+++|+||||||||||+++|+|... +.+ |++.++|.+.. ...+++.++|++|+
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~ 98 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQ 98 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcccccCCHHHHhcceEEEccC
Confidence 45679999999999999999999999999999999999865 334 55555555542 12345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCc----cccCcccCCCCCCCCHHHHHHHHHHHHHHhC
Q 001507 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVAN 857 (1065)
Q Consensus 782 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~ 857 (1065)
+.+++.+|++||+.+....... ....+..+.++++++.+++.+ ..+. .+..||+|||||++|||+|+.+
T Consensus 99 ~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~ 171 (257)
T PRK14246 99 PNPFPHLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNS-----PASQLSGGQQQRLTIARALALK 171 (257)
T ss_pred CccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcC-----CcccCCHHHHHHHHHHHHHHcC
Confidence 9999999999999886432211 122334456788999999854 2232 2357999999999999999999
Q ss_pred CCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 858 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 858 p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+...||++++|+ +|+++..|+.
T Consensus 172 P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~-~g~i~~~g~~ 236 (257)
T PRK14246 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLY-NGELVEWGSS 236 (257)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCH
Confidence 999999999999999999999999999864 699999999976 5668899999998 5899988875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=323.06 Aligned_cols=221 Identities=24% Similarity=0.353 Sum_probs=173.6
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++ +..+|+|+||++++||+++|+|||||||||||++|+|.+++.+ +.+|+|.++|.++... ..
T Consensus 6 ~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 345555553 2469999999999999999999999999999999999986421 2589999999876431 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ .||+||+.++....+... + ...+..+++.++
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 128 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKS--K-------------------------------HKLDRIVEESLK 128 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCc--H-------------------------------HHHHHHHHHHHH
Confidence 457999999998777 899999988643211000 0 001123566777
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+|+.+..+.. .++.+.+||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ ++++++++|+
T Consensus 129 ~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tili~sH~ 204 (250)
T PRK14262 129 KAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE---NYTIVIVTHN 204 (250)
T ss_pred HcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc---CcEEEEEeCC
Confidence 88875421111 1334567999999999999999999999999999999999999999999998853 3677779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++..++|++++|++|+++..|+++++.
T Consensus 205 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 205 IGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999987764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=320.82 Aligned_cols=222 Identities=21% Similarity=0.311 Sum_probs=173.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++ .+.+|+|+||++++||+++|+|+||||||||+++|+|... +..+.+|+|.++|.++... ..
T Consensus 8 ~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 8 VKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 345555543 3469999999999999999999999999999999999975 2213599999999876432 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++. ||+||+.+....+...... ...+..++++++
T Consensus 85 ~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~ 131 (251)
T PRK14244 85 RAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLT 131 (251)
T ss_pred hhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHH
Confidence 4579999999988875 9999998763322100000 001123677888
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||.+...+.+ +..+.+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+
T Consensus 132 ~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~--~~tiiiisH~ 207 (251)
T PRK14244 132 SVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K--NFTIIVVTHS 207 (251)
T ss_pred HcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCeEEEEeCC
Confidence 999865322222 23446799999999999999999999999999999999999999999999874 2 4677779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.++||++++|++|++++.|+++++.
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999887653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=319.42 Aligned_cols=206 Identities=21% Similarity=0.236 Sum_probs=164.2
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECCccCC-----cccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+|++|++||++||+||||||||||+++|+|..... +.+|+|.++|.++. ...+++.++|++|++.
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 357999999999999999999999999999999999975311 25899999998753 1234567999999988
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++ .|+.||+.+....+. .. ....+.++++++.+++.+..+... ...+..||||||||++|||||+.+|++|||
T Consensus 102 ~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllL 175 (264)
T PRK14243 102 PFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILM 175 (264)
T ss_pred ccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 877 499999987653321 11 122345667777777743111111 112357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec--------CcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR--------GGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~--------gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++ .|+++..|+.
T Consensus 176 DEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 176 DEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 999999999999999999999865 589999999986 67889999999972 4899999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=370.40 Aligned_cols=212 Identities=24% Similarity=0.370 Sum_probs=170.3
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.+++.+++++|+|+|++++|||.++|+||||||||||+++|+|.+.|. +|+|.+||.++.+.. .++.+
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhc
Confidence 456666665444467999999999999999999999999999999999999876 999999999887653 35689
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh--
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-- 160 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-- 160 (1065)
+||+|++.+|. .|++|||.++... ...+ .+.++++..
T Consensus 558 ~~v~Q~~~lF~-gTIreNI~~g~~~----~~~e------------------------------------~i~~al~~a~l 596 (711)
T TIGR00958 558 ALVGQEPVLFS-GSVRENIAYGLTD----TPDE------------------------------------EIMAAAKAANA 596 (711)
T ss_pred eEEecCccccc-cCHHHHHhcCCCC----CCHH------------------------------------HHHHHHHHcCC
Confidence 99999999776 5999999875210 0000 122222222
Q ss_pred -----CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 161 -----GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 161 -----gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
.+++..||.+|+++ .+||||||||++||||++++|+|++||||||+||+.+...+.+ ... . +++|++++
T Consensus 597 ~~~i~~lp~GldT~ige~G-~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~-~~~TvIiI 670 (711)
T TIGR00958 597 HDFIMEFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---R-ASRTVLLI 670 (711)
T ss_pred HHHHHhCCCccCCcccCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---c-CCCeEEEE
Confidence 25567899999764 5799999999999999999999999999999999999999888 221 1 34567778
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+|..+.+ ..+|+|++|++|++++.|+++++.+
T Consensus 671 tHrl~~i-~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 671 AHRLSTV-ERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred eccHHHH-HhCCEEEEEECCEEEEeeCHHHHHh
Confidence 8887655 5699999999999999999998864
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=332.63 Aligned_cols=212 Identities=24% Similarity=0.382 Sum_probs=178.3
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.++++|+++.++. .+.++|+|+||++++||.+||+|+||||||||++.|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 6788888887742 34579999999999999999999999999999999999776 5699999999886
Q ss_pred C---cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCc-------ccCCC
Q 001507 767 R---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 836 (1065)
Q Consensus 767 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~ 836 (1065)
. +..+++.+++++|...+|.+ |+|+||..+. | +.+ ++.+.++++.+||.+..... +|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 4 33467789999998888765 9999997642 2 222 34578899999998765443 333 3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
.+.||||||||++|||+|+++.++++|||||.|||+.+.+++++.|.+-+ +|+|+|++||+.. -.+.||+|++|+ +
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 56899999999999999999999999999999999999999999999865 5999999999975 357899999998 5
Q ss_pred cEEEEeCCCC
Q 001507 917 GELIYAGPLG 926 (1065)
Q Consensus 917 g~~~~~g~~~ 926 (1065)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 8999999764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=302.88 Aligned_cols=159 Identities=30% Similarity=0.436 Sum_probs=143.0
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHSP 786 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~~~~ 786 (1065)
++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 4579999999999999999999999999999999999876 568999999987542 234577999999998888
Q ss_pred CCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCC
Q 001507 787 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866 (1065)
Q Consensus 787 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEP 866 (1065)
.+|++||+.+. ||||||||++|||+|+.+|++++||||
T Consensus 90 ~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 90 HLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred CCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 89999988531 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 867 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 867 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
|+|||+.++..+.+.|++++++ |+|+|+++|+++ .+.+.+|++++|++
T Consensus 128 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 9999999999999999999876 899999999976 56668999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=322.02 Aligned_cols=221 Identities=23% Similarity=0.316 Sum_probs=172.7
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.+.+.+ +.+|+|.++|.++... ..
T Consensus 9 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 9 TKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 345555443 3469999999999999999999999999999999999875321 2489999999887542 22
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++. ||+||+.|.....+... . ...+..++++++
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 131 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKN--K-------------------------------KTLDTIVEKSLK 131 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCC--H-------------------------------HHHHHHHHHHHH
Confidence 4569999999988874 99999988644321000 0 001123566777
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.++|.+...+.. ++....||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++ + .+|++++|+
T Consensus 132 ~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~ 207 (253)
T PRK14261 132 GAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHN 207 (253)
T ss_pred HhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcC
Confidence 777753211111 234557999999999999999999999999999999999999999999998853 3 577779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.+++|++++|++|+++..|+.+++.
T Consensus 208 ~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 208 MQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999987663
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=315.61 Aligned_cols=195 Identities=27% Similarity=0.414 Sum_probs=159.1
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+.+|+|+||++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 469999999999999999999999999999999999876 468999999987532 234567999999988776 69
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCccc------CCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+.||+.+... ... .+.+.++++.+++.+..+.... ......||||||||++|||+|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 111 1235677888888766554321 112358999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 923 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g 923 (1065)
||||+|||+.++..+.+.|++++++ +|||++||+++ .. +.+|++++|.+ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998754 89999999986 34 78999999985 7887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=322.53 Aligned_cols=220 Identities=22% Similarity=0.315 Sum_probs=171.6
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC----CCC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF----VPP 79 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~----~~~ 79 (1065)
++++++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|.+++. .+.+|+|.++|.++... ..+
T Consensus 6 ~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 6 IENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 456666554 246999999999999999999999999999999999988652 13489999999876421 224
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.++....+... + ...++.+++.++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~--~-------------------------------~~~~~~~~~~~~~ 128 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKD--K-------------------------------KVLDEVVERSLRG 128 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCc--h-------------------------------HHHHHHHHHHHHH
Confidence 56999999998887 899999987643211000 0 0011235566777
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+|+.+...... +.....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|++++|+.
T Consensus 129 ~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~ 204 (249)
T PRK14253 129 AALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSM 204 (249)
T ss_pred cCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCH
Confidence 77653211111 233457999999999999999999999999999999999999999999999853 3 6777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+++.++||++++|++|++++.|+.+++
T Consensus 205 ~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 205 QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999987665
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=366.65 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=175.6
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.++++|+++.++. .++.+|+|+|++|+|||++||+||||||||||+++|+|..+ +.+|+|.+||+++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5888999887731 23579999999999999999999999999999999999987 5689999999886
Q ss_pred C---cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccc-------cCcccCCC
Q 001507 767 R---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 836 (1065)
Q Consensus 767 ~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~~~~~~ 836 (1065)
. ...+++.+|||+|++.++++ |++||+.++. + .+ ++.++++++..++.+.. |+.++..
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 4 35678889999999999865 9999998742 1 12 23467788888776543 4445443
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
..+||||||||++|||||+++|+||+||||||+||+.+.+.+++.|+++ ++|+|++||+++ ..+.+|+|++|+ +
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~-~ 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLD-A 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEE-C
Confidence 3679999999999999999999999999999999999999999999886 589999999975 567799999998 5
Q ss_pred cEEEEeCCC
Q 001507 917 GELIYAGPL 925 (1065)
Q Consensus 917 g~~~~~g~~ 925 (1065)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=307.05 Aligned_cols=185 Identities=25% Similarity=0.298 Sum_probs=155.2
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCC
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence 34679999999999999999999999999999999999876 568999999987532 23456789999998888889
Q ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPts 868 (1065)
|+.||+.+....+. . + .+.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 89 SALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999987643321 1 1 234678899999987666543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEE
Q 001507 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 912 (1065)
Q Consensus 869 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~ 912 (1065)
|||+.++..+.+.|++++++|.|||++||++.. + .+++++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 999999999999999987779999999999752 2 3466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=362.97 Aligned_cols=219 Identities=26% Similarity=0.377 Sum_probs=175.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceE
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 82 (1065)
++++++.+++ +.++|+|+||+++|||.+||+||||||||||++.|.|.+.|. +|+|.+||.++.+.. .++.+
T Consensus 331 f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 331 FENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred EEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhc
Confidence 3455555543 457999999999999999999999999999999999999875 999999999887664 46789
Q ss_pred EEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 162 (1065)
+||+|++.+|. .||+|||.++..- ...+.+.++++.. .+.+.+. .+
T Consensus 406 ~~V~Qd~~LF~-~TI~~NI~~g~~~----at~eei~~a~k~a---------------------------~~~d~I~--~l 451 (567)
T COG1132 406 GIVSQDPLLFS-GTIRENIALGRPD----ATDEEIEEALKLA---------------------------NAHEFIA--NL 451 (567)
T ss_pred cEEcccceeec-ccHHHHHhcCCCC----CCHHHHHHHHHHh---------------------------ChHHHHH--hC
Confidence 99999999888 6999999986321 0111121111110 0222222 35
Q ss_pred cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHH
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~ 242 (1065)
++.+||.||+++ .+||||||||++||||++.+|+|++||||||+||+.+...+.+.++++.+ ++|+++ ++|..+.+
T Consensus 452 p~g~dt~vge~G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti 527 (567)
T COG1132 452 PDGYDTIVGERG-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTI 527 (567)
T ss_pred cccccceecCCC-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHH
Confidence 778899999655 47999999999999999999999999999999999999999999997653 345555 88888777
Q ss_pred HhhcccEEEecCCcEEEEcCcchHHH
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
.+ +|+|++|++|++++.|+++++..
T Consensus 528 ~~-aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 528 KN-ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred Hh-CCEEEEEECCEEEEecCHHHHHH
Confidence 66 99999999999999999999875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=318.91 Aligned_cols=220 Identities=19% Similarity=0.315 Sum_probs=172.4
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...|.+ +.+|+|.++|.++... ..+
T Consensus 8 ~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (251)
T PRK14270 8 KNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELR 84 (251)
T ss_pred EEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHH
Confidence 44554443 2469999999999999999999999999999999999876421 2589999999887532 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .|++||+.|.....+... . ......++++++.
T Consensus 85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~ 130 (251)
T PRK14270 85 KRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKD-K--------------------------------KELDKIVEWALKK 130 (251)
T ss_pred hheEEEecCCCcCC-CcHHHHHHhHHHhcCCCc-H--------------------------------HHHHHHHHHHHHH
Confidence 56999999998887 899999988643221100 0 0011236677888
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+||.+...... +.....||||||||++||||++.+|+|++|||||+|||+.++.++.+.|+++.+ + .+|++++|+.
T Consensus 131 ~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~ 206 (251)
T PRK14270 131 AALWDEVKDDL-KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNM 206 (251)
T ss_pred cCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCH
Confidence 88743111111 234557999999999999999999999999999999999999999999998864 3 5677789999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++.++||++++|++|++++.|+++++.
T Consensus 207 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 207 QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999988764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=314.43 Aligned_cols=207 Identities=25% Similarity=0.311 Sum_probs=166.6
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCC--C-CeeEEEEEECCccCCc-----ccccceEEEEcCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 783 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~~~v~q~~~ 783 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.+||.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 4579999999999999999999999999999999999743 1 1268999999987642 234567999999998
Q ss_pred CCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+++. |+.||+.+...... ....+...+++.++++.+++.+...... ......||+|||||++|||+|+.+|++|+|
T Consensus 95 ~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llll 170 (250)
T PRK14266 95 PFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILM 170 (250)
T ss_pred cCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8875 99999987643221 1122334456788888888754211111 122467999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|++++ +++|||++||+++ ++...+|++++|. +|++++.|+.
T Consensus 171 DEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~~~~~i~~l~-~G~i~~~g~~ 229 (250)
T PRK14266 171 DEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQ-QATRVSKYTSFFL-NGEIIESGLT 229 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEECCHH-HHHhhcCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999986 4899999999986 5778899999997 5899998875
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=320.69 Aligned_cols=216 Identities=25% Similarity=0.328 Sum_probs=173.1
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCcc-----CCCCC----
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG-----FKEFV---- 77 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~-----~~~~~---- 77 (1065)
+++++.+++ +.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +....
T Consensus 10 ~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 10 RGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHH
Confidence 455555432 46999999999999999999999999999999999999775 9999999987 54321
Q ss_pred ---CCceEEEEccccc--cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhH
Q 001507 78 ---PPRTSAYVSQQDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLV 152 (1065)
Q Consensus 78 ---~~~~~~yv~Q~~~--~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (1065)
.++.++|++|++. +++.+|+.||+.+........ .+ ...+..
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--------------------------------~~~~~~ 130 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR-HY--------------------------------GDIRAT 130 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccC-cH--------------------------------HHHHHH
Confidence 1346999999973 567789999997642211000 00 001223
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEE
Q 001507 153 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231 (1065)
Q Consensus 153 v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ 231 (1065)
++++++.+|+.+ ..++. +..||||||||++|||||+.+|+|++|||||+|||+.++..+.+.|+++.+. .+.+
T Consensus 131 ~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~t 204 (258)
T PRK11701 131 AGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLA 204 (258)
T ss_pred HHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcE
Confidence 678899999964 44544 3569999999999999999999999999999999999999999999988653 3577
Q ss_pred EEEecCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 232 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 232 ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
|++++|+.+++..++|++++|++|++++.|+++++.
T Consensus 205 ii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 205 VVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 888999999999999999999999999999887653
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=319.54 Aligned_cols=195 Identities=27% Similarity=0.381 Sum_probs=155.9
Q ss_pred eEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCH
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 714 ~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 69999999999999999999999999999999999876 568999999986532 234567999999988776 699
Q ss_pred HHHHHHHhhccCCCCCCHHHHH-----HHHHHHHHHc--CCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 791 LESLLFSAWLRLPSEIELETQR-----AFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
+||+.+.... ....... ..+++.++.+ ++....+. .+..||+|||||++|||||+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 1111111 1123444444 34433332 2468999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+.+.|+++. ++.|||++||+++ ++ ..||++++|.+ |+++..|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999986 4899999999986 45 45999999985 788888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=321.41 Aligned_cols=220 Identities=23% Similarity=0.290 Sum_probs=174.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCC--CceeEEEEECCccCCCC----CCCc
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF----VPPR 80 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~--~~~~G~i~~~g~~~~~~----~~~~ 80 (1065)
+++++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|++.|. .+.+|+|.++|.++.+. ..++
T Consensus 25 ~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 25 VNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred eeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 45555553 346999999999999999999999999999999999998751 13599999999876532 1245
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.+++ .||+||+.++...... .. . .+....+.++++.+
T Consensus 102 ~i~~v~q~~~l~~-~tv~eni~~~~~~~~~---~~----------------~--------------~~~~~~~~~~l~~~ 147 (276)
T PRK14271 102 RVGMLFQRPNPFP-MSIMDNVLAGVRAHKL---VP----------------R--------------KEFRGVAQARLTEV 147 (276)
T ss_pred heEEeccCCccCC-ccHHHHHHHHHHhccC---CC----------------H--------------HHHHHHHHHHHHHc
Confidence 7999999998787 7999999875432100 00 0 00112356778888
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..++.. ++.+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.+
T Consensus 148 ~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~ 223 (276)
T PRK14271 148 GLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLA 223 (276)
T ss_pred CCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHH
Confidence 8865332222 234567999999999999999999999999999999999999999999998853 3 57777999999
Q ss_pred HHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++.+++|++++|++|++++.|+++++.
T Consensus 224 ~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 224 QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=322.93 Aligned_cols=207 Identities=23% Similarity=0.287 Sum_probs=170.2
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC------CCceEEEEcccc--c
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 90 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~------~~~~~~yv~Q~~--~ 90 (1065)
+.+|+|+||++++|++++|+||||||||||+++|+|.+.+. +|+|.++|.++.... .++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 57999999999999999999999999999999999998765 999999998765432 245799999997 3
Q ss_pred cCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc-cccccc
Q 001507 91 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 169 (1065)
Q Consensus 91 ~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~ 169 (1065)
+++..|+.|++.+...... . .+ .......++++++.+||. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~-~--~~------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLL-S--LD------------------------------KAERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhc-c--CC------------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 5677899999976432100 0 00 000122377889999996 445544
Q ss_pred ccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccE
Q 001507 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 170 vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v 249 (1065)
.+.||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+. .++++++++|+.+++..+||++
T Consensus 149 -----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 149 -----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ-FGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred -----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH-cCcEEEEEECCHHHHHHhCCEE
Confidence 4569999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEecCCcEEEEcCcchHH
Q 001507 250 ILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 250 ~~l~~G~i~~~G~~~~~~ 267 (1065)
++|++|++++.|+++++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999987754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=363.54 Aligned_cols=213 Identities=22% Similarity=0.374 Sum_probs=171.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++. .+.++|+|+|++|++||.++|+|+||||||||+++|+|.+.|+ +|+|.+||.++.+.. .++.++
T Consensus 345 ~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 345 RNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhce
Confidence 345555432 2356999999999999999999999999999999999999876 999999999886653 356799
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC--
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-- 161 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-- 161 (1065)
||+|++.+|+ .|++|||.++.. ..++ +++++++++..|
T Consensus 421 ~v~Q~~~lf~-~Ti~~Ni~~~~~-----~~~~----------------------------------~~~i~~al~~~~l~ 460 (582)
T PRK11176 421 LVSQNVHLFN-DTIANNIAYART-----EQYS----------------------------------REQIEEAARMAYAM 460 (582)
T ss_pred EEccCceeec-chHHHHHhcCCC-----CCCC----------------------------------HHHHHHHHHHhCcH
Confidence 9999999886 599999987421 0000 001222222222
Q ss_pred -----CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 001507 162 -----LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 162 -----L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~ 236 (1065)
|++..||.+|+++ .+||||||||++||||++++|+|++||||||+||+.++..+.+.|+++.. ++|+++++
T Consensus 461 ~~i~~lp~Gldt~ig~~g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~---~~tvI~Vt 536 (582)
T PRK11176 461 DFINKMDNGLDTVIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK---NRTSLVIA 536 (582)
T ss_pred HHHHhcccccCceeCCCC-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC---CCEEEEEe
Confidence 5677899999865 57999999999999999999999999999999999999999999988642 35666678
Q ss_pred CCchHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 237 ~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
|..+ ..+.||+|++|++|++++.|+++++.+
T Consensus 537 Hr~~-~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 537 HRLS-TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred cchH-HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 8875 456799999999999999999988864
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=311.91 Aligned_cols=194 Identities=21% Similarity=0.300 Sum_probs=164.2
Q ss_pred cceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCH
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 711 ~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
..+.+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|. +++++|...+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 45689999999999999999999999999999999999877 56899999985 3567777777778999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
.||+.+...... ...++..+.++++++.+++.+..+... ..||||||||++||++|+.+|++|||||||+||
T Consensus 103 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 999987543321 223344455677888888877665543 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 871 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|+.++..+.+.|+++++.|+|||+++|++. .+.+.+|++++|. +|+++..|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHH
Confidence 999999999999999777999999999976 5677899999998 58999888753
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=319.42 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=170.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|.+.|.. ..+|+|.++|.++... ..+
T Consensus 8 ~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T PRK14272 8 QDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84 (252)
T ss_pred eeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhh
Confidence 45555543 3469999999999999999999999999999999999987532 1489999999876431 224
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++.+|++||+.++....+.. ..+ ...+.++++++.
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~-~~~--------------------------------~~~~~~~~~l~~ 131 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR-DRD--------------------------------HLMEVAERSLRG 131 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCC-CHH--------------------------------HHHHHHHHHHHH
Confidence 56999999999899899999998754321100 000 001124445555
Q ss_pred hCCc----ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 160 LGLD----TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 160 lgL~----~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
+++. +..++ .++.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +++|+++
T Consensus 132 ~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~ 203 (252)
T PRK14272 132 AALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK---VTTIIIV 203 (252)
T ss_pred cCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEE
Confidence 5543 22333 3457999999999999999999999999999999999999999999998853 3677789
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+|+.+++.++||++++|++|++++.|+++++.
T Consensus 204 sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 204 THNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999987764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=315.24 Aligned_cols=208 Identities=24% Similarity=0.291 Sum_probs=162.4
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcc---c-ccceEEEEcCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 787 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~~~v~q~~~~~~~ 787 (1065)
++.+|+|+|++|++|++++|+||||||||||+++|+|..+..+.+|+|.++|.++... . .++.++|++|++.+++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 4579999999999999999999999999999999999842115689999999876321 1 23469999999988888
Q ss_pred CCHHHHHHHHhh-ccC--CCC-CCHHHHHHHHHHHHHHcCCC-ccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 788 LTVLESLLFSAW-LRL--PSE-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 788 ltv~e~l~~~~~-~~~--~~~-~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
+|+.+++.+... ++. ... .......+.++++++.+++. +..+... ...||||||||++|||||+.+|++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~ill 168 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCI 168 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887776653211 110 000 11112345677888888884 3344322 13699999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 99999999999999999999999877899999999976 34444 79999997 5899999875
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=319.13 Aligned_cols=221 Identities=20% Similarity=0.258 Sum_probs=172.5
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.+++ +.+|+|+|++|++|++++|+||||||||||+++|+|.+.|.. +.+|+|.++|.++... ..
T Consensus 7 ~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 7 IRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 3456555532 469999999999999999999999999999999999987641 2369999999876431 22
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++. ||+||+.++....+... . ...+..++++++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~ 129 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTA--Q-------------------------------SRLDEVVEKSLR 129 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCCh--h-------------------------------hHHHHHHHHHHH
Confidence 4679999999988875 99999988643221100 0 000122555667
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+||.+...... ++.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+
T Consensus 130 ~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tilivsh~ 205 (251)
T PRK14249 130 QAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q--NYTIAIVTHN 205 (251)
T ss_pred HhCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCEEEEEeCC
Confidence 777643211111 23456799999999999999999999999999999999999999999999874 2 4677779999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.++||++++|++|++++.|+++++.
T Consensus 206 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 206 MQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999987763
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=313.95 Aligned_cols=219 Identities=25% Similarity=0.272 Sum_probs=171.4
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCC---eeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~---~~~G~i~i~g 763 (1065)
.+.++++++.+ +++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~-------------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYY-------------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEE-------------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 36667776544 3457999999999999999999999999999999999986521 2689999999
Q ss_pred ccCC-------cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCC
Q 001507 764 YPKR-------QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836 (1065)
Q Consensus 764 ~~~~-------~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 836 (1065)
.+.. ...+++.++|++|++.+++. |++||+.+....... ......++.++++++.+++.+....... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~ 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLG-DL 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHh-CC
Confidence 7642 12345679999999988876 999999876432211 1112223456778888877421111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecC
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|. +
T Consensus 159 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~-~ 235 (265)
T PRK14252 159 AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMY-M 235 (265)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 357999999999999999999999999999999999999999999999865 699999999986 5778899999998 5
Q ss_pred cEEEEeCCC
Q 001507 917 GELIYAGPL 925 (1065)
Q Consensus 917 g~~~~~g~~ 925 (1065)
|+++..|+.
T Consensus 236 G~i~~~g~~ 244 (265)
T PRK14252 236 GELIEFGAT 244 (265)
T ss_pred CEEEEeCCH
Confidence 899988874
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=316.45 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=167.1
Q ss_pred cccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC---CceEEEEccccccCCCCCH
Q 001507 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTV 97 (1065)
Q Consensus 21 iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTv 97 (1065)
+|+|+||++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999873 2 8999999987754321 3458999999887888999
Q ss_pred HHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCccccc
Q 001507 98 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177 (1065)
Q Consensus 98 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 177 (1065)
+||+.+..... . + .......++++++.+||.+..++.+ +.
T Consensus 87 ~~nl~~~~~~~-~----~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T----R------------------------------TEAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCccC-C----C------------------------------cHHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 99998752110 0 0 0001224778899999987666554 46
Q ss_pred CchhhhhhHHHHHHHhc-------CCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEE
Q 001507 178 ISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250 (1065)
Q Consensus 178 LSGGqkqRv~ia~al~~-------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~ 250 (1065)
||||||||++|||||+. +|++++|||||+|||+.++..+.+.|+++++ .+++|++++|+.+++..+||+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ--QGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999864 25677789999999999999999
Q ss_pred EecCCcEEEEcCcchH
Q 001507 251 LLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 251 ~l~~G~i~~~G~~~~~ 266 (1065)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999987665
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=362.04 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=171.3
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++. +.++|+|+|+++++||.++|+|+||||||||+++|+|++.|. +|+|.+||.++.+.. .++.++
T Consensus 344 ~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 344 DNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred EEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheE
Confidence 455555532 246999999999999999999999999999999999999886 999999999887543 357899
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhC--
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-- 161 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-- 161 (1065)
||+|++.+|+. |++|||.++.. ... +.++++++..|
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~~-----~~d------------------------------------~~i~~a~~~~gl~ 456 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGRD-----ISE------------------------------------EQVWQALETVQLA 456 (592)
T ss_pred EEccCCccccc-hHHHHHHhCCC-----CCH------------------------------------HHHHHHHHHcCcH
Confidence 99999998886 99999988521 000 01233333333
Q ss_pred -----CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEec
Q 001507 162 -----LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 162 -----L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~ 236 (1065)
|++..||.+|+.+ .+||||||||++||||++.+|+|++||||||+||+.+...+.+.|+++.. + +|+++++
T Consensus 457 ~~i~~lp~Gldt~i~e~g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~-~tvIivt 532 (592)
T PRK10790 457 ELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--H-TTLVVIA 532 (592)
T ss_pred HHHHhccccccccccCCC-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEe
Confidence 5567899999854 57999999999999999999999999999999999999999999998753 3 4555577
Q ss_pred CCchHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 237 ~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
|..+. ...||+|++|++|++++.|+++++.+
T Consensus 533 Hr~~~-l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 533 HRLST-IVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred cchHH-HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 77654 45699999999999999999998864
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=323.10 Aligned_cols=218 Identities=20% Similarity=0.284 Sum_probs=168.8
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ ...+|+|+||+|++||+++|+|||||||||||++|+|.+.+.. +.+|+|.++|.++... ..+
T Consensus 17 ~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 17 QNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 34444443 2469999999999999999999999999999999999976311 3599999999876421 123
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.++....+.. . ..+..++++++.
T Consensus 94 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~---~--------------------------------~~~~~~~~~l~~ 137 (269)
T PRK14259 94 RRIGMVFQQPNPFP-KSIYENIAFGARINGYT---G--------------------------------DMDELVERSLRK 137 (269)
T ss_pred hceEEEccCCccch-hhHHHHHhhhhhhcCCc---H--------------------------------HHHHHHHHHHHH
Confidence 56999999998887 49999998865322100 0 001125566777
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+++....+... ++.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.+|++++|+.
T Consensus 138 ~~l~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~ 213 (269)
T PRK14259 138 AAVWDECKDKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNM 213 (269)
T ss_pred hCCcchhhhhh-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCH
Confidence 77642111111 234457999999999999999999999999999999999999999999998843 36777799999
Q ss_pred hHHHhhcccEEEecC-----------CcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSE-----------GQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~-----------G~i~~~G~~~~~~ 267 (1065)
+++..+||++++|++ |++++.|+++++.
T Consensus 214 ~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 214 QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 999999999999996 6689999988774
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=370.89 Aligned_cols=217 Identities=23% Similarity=0.321 Sum_probs=169.9
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++.. +.++|+|+|++|++||.++|+||||||||||+++|+|.+.|. +|+|.+||.++.+.. .++.++
T Consensus 481 ~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 481 RNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred EEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhhee
Confidence 4555555432 346999999999999999999999999999999999999876 999999999886653 467899
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 163 (1065)
||+|++++|. .|++|||.++.. ....+.+.++++. . .+++.++ .++
T Consensus 557 ~v~Q~~~lf~-gTi~eNi~l~~~----~~~~~~i~~al~~------------------~---------~l~~~i~--~lp 602 (710)
T TIGR03796 557 MVDQDIFLFE-GTVRDNLTLWDP----TIPDADLVRACKD------------------A---------AIHDVIT--SRP 602 (710)
T ss_pred EEecCChhhh-ccHHHHhhCCCC----CCCHHHHHHHHHH------------------h---------CCHHHHH--hCc
Confidence 9999999876 599999986411 0000111111100 0 0111111 356
Q ss_pred ccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHH
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~ 243 (1065)
...||.+|+++ .+||||||||++||||++++|+|++||||||+||+.++..+.+.|++ . ++|+|+++|..+.+
T Consensus 603 ~gl~t~i~e~G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~-~~T~IiitHrl~~i- 675 (710)
T TIGR03796 603 GGYDAELAEGG-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----R-GCTCIIVAHRLSTI- 675 (710)
T ss_pred CcccceeccCC-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----c-CCEEEEEecCHHHH-
Confidence 67899999865 58999999999999999999999999999999999999999999975 2 35566678887665
Q ss_pred hhcccEEEecCCcEEEEcCcchHHH
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 244 ~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
..||+|++|++|++++.|+++++.+
T Consensus 676 ~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 676 RDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HhCCEEEEEeCCEEEEecCHHHHHH
Confidence 4599999999999999999998864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=301.72 Aligned_cols=160 Identities=24% Similarity=0.455 Sum_probs=142.4
Q ss_pred EeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCC---CCCCC
Q 001507 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPG 787 (1065)
Q Consensus 715 il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 787 (1065)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 8999999999999999999999999999999999877 568999999987643 22456799999984 57788
Q ss_pred CCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPt 867 (1065)
+|++||+.+... ||+|||||++|||||+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcE
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 918 (1065)
Q Consensus 868 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~ 918 (1065)
+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999777899999999976 57788999999985 54
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=321.86 Aligned_cols=221 Identities=21% Similarity=0.274 Sum_probs=171.8
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCc--eeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~--~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++ +..+|+|+|+++++||+++|+|+||||||||+++|+|.+++..+ .+|+|.++|.++... ..
T Consensus 10 ~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 10 VKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred EEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 345555543 24699999999999999999999999999999999999875322 489999999876431 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ .||+||+.++........ + ...+..++++++
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~-------------------~--------------~~~~~~~~~~l~ 132 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLP-------------------Q--------------ADLDEIVESALK 132 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCC-------------------H--------------HHHHHHHHHHHH
Confidence 357999999998887 899999987643221000 0 001123566777
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.+|+....... -++.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+
T Consensus 133 ~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~ 208 (259)
T PRK14260 133 GAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHN 208 (259)
T ss_pred HcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCC
Confidence 88774211111 1234557999999999999999999999999999999999999999999998753 3 677779999
Q ss_pred chHHHhhcccEEEec-----CCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLS-----EGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~-----~G~i~~~G~~~~~~ 267 (1065)
.+++.++||++++|+ +|++++.|++.++.
T Consensus 209 ~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 209 MQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred HHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 999999999999997 59999999988763
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=318.74 Aligned_cols=221 Identities=22% Similarity=0.324 Sum_probs=172.0
Q ss_pred HHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCC--CCceeEEEEECCccCCCC-----CC
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VP 78 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~--~~~~~G~i~~~g~~~~~~-----~~ 78 (1065)
++++++.++. +.+|+|+|++|++||+++|+|+||||||||+++|+|.+.+ ..+.+|+|.++|.++... ..
T Consensus 7 ~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4556665532 4699999999999999999999999999999999999862 113599999999876431 12
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++.+++ .||+||+.++....+... .+ ..+..++++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~--------------------~~-------------~~~~~~~~~l~ 129 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKD--------------------KE-------------LIDQRVEESLK 129 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCC--------------------HH-------------HHHHHHHHHHH
Confidence 456999999998776 799999987543211000 00 00123567788
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~ 238 (1065)
.++|........ ++...+||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ +++|++++|+
T Consensus 130 ~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~ 205 (251)
T PRK14251 130 QAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHN 205 (251)
T ss_pred HcCCCcchHHHh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECC
Confidence 888842110001 234467999999999999999999999999999999999999999999998743 3677789999
Q ss_pred chHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
.+++.+++|++++|++|+++..|+.+++.
T Consensus 206 ~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 206 LQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999887663
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=322.13 Aligned_cols=221 Identities=23% Similarity=0.321 Sum_probs=171.7
Q ss_pred eEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCC---CeeEEEEEECC
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 763 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~---~~~~G~i~i~g 763 (1065)
.+.++|+++.+ +++.+|+++||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~-------------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYY-------------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 35666666544 345799999999999999999999999999999999998641 14689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCC---------CC-CHHHHHHHHHHHHHHcCCCccc
Q 001507 764 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS---------EI-ELETQRAFVEEVMELVELTSLS 828 (1065)
Q Consensus 764 ~~~~~-----~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~---------~~-~~~~~~~~~~~~l~~l~l~~~~ 828 (1065)
.++.. ...++.++|++|++.+++ .||+||+.+....+... .. ......+.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988877 49999999864321100 01 1122345678888888874321
Q ss_pred cCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcC
Q 001507 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD 908 (1065)
Q Consensus 829 ~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 908 (1065)
..... ..+..||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12368999999999999999999999999999999999999999999999876 589999999986 5677899
Q ss_pred eEE-EEecCcEEEEeCCC
Q 001507 909 ELL-FMKRGGELIYAGPL 925 (1065)
Q Consensus 909 ~~~-~l~~gg~~~~~g~~ 925 (1065)
+++ +|. +|+++..|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 566 5899999875
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=314.82 Aligned_cols=197 Identities=26% Similarity=0.382 Sum_probs=156.4
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 459999999999999999999999999999999999876 568999999986532 2345679999999887775 9
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcc------cCCCCCCCCHHHHHHHHHHHHHHhCCCceee
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI------GLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~~~lSgGqrqr~~ia~~l~~~p~il~l 863 (1065)
++||+.+... .... ..+++.++.+++.+..+... .......|||||||||+|||+|+.+|++|+|
T Consensus 93 v~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 1111 12344444444433322211 0112468999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||+|||+.++..+++.|+++. +|+|||++||+++ .+ ..+|++++|. +|++++.|+.
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~-~g~~~~~~~~ 221 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLD-DGKIIEEGTH 221 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEe-CCeEEEeCCH
Confidence 99999999999999999999985 5899999999986 34 5699999998 5788887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=319.38 Aligned_cols=218 Identities=24% Similarity=0.348 Sum_probs=164.6
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++..++.+|+|+||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++
T Consensus 4 ~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 4 KNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred EEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEE
Confidence 34555444323356999999999999999999999999999999999998775 999999998764322 234699
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh--C
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--G 161 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--g 161 (1065)
|++|++.+++ .||+||+.+..... ..+ +..... +. ..+.+.++.+ +
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~----~~~---~~~~~~---------------~~---------~~~~~~~~~l~~~ 128 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA----TDE---EVEEAA---------------KK---------ANIHDFIMSLPDG 128 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC----CHH---HHHHHH---------------HH---------cChHHHHHhhccc
Confidence 9999988776 69999998743211 000 000000 00 0022233333 3
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+....+ ..++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++. .+++|++++|+.++
T Consensus 129 ~~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~~~ 200 (238)
T cd03249 129 YDTLVG-----ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLST 200 (238)
T ss_pred cceeec-----cCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHH
Confidence 433332 2346799999999999999999999999999999999999999999999874 25667778899998
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
+. .||++++|++|++++.|+.+++.+
T Consensus 201 ~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 201 IR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred Hh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 86 899999999999999998776654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=357.22 Aligned_cols=211 Identities=27% Similarity=0.441 Sum_probs=175.4
Q ss_pred eeEEEeceeEEEecccccccccccccceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCcc
Q 001507 686 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 765 (1065)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~ 765 (1065)
..++|+|+++.++ +++++|+|+||+++|||++||+||||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~------------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcC------------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 4588999988763 15689999999999999999999999999999999999877 568999999988
Q ss_pred CC---cccccceEEEEcCCCCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCC-------ccccCcccCC
Q 001507 766 KR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------SLSGALIGLP 835 (1065)
Q Consensus 766 ~~---~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~ 835 (1065)
+. ...+++.++||+|++.+|. -|++||+.++. + +.+. +.++++++..++. +-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~-~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR----P-DATD----EEIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC----C-CCCH----HHHHHHHHHhChHHHHHhCcccccceecCC
Confidence 64 3567889999999999987 69999999862 1 1222 2344555444332 2356777633
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEec
Q 001507 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 836 ~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
...||||||||++||||++++|+||+||||||+||+.+...|++.++++. +++|+|+++|+++ ....+|+|++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999876 6789999999986 3456999999984
Q ss_pred CcEEEEeCCC
Q 001507 916 GGELIYAGPL 925 (1065)
Q Consensus 916 gg~~~~~g~~ 925 (1065)
|++++.|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 799999986
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=327.96 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=161.3
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHH
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
+.+|+|+||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 569999999999999999999999999999999999876 5689999999641 1222344567789999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCCH
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgLD~ 872 (1065)
|+.+...... ....+..+.++++++.+++.+..+..+ ..||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987543321 223344456778999999987766543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCCC
Q 001507 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.++..+++.|++++++|+|||++||+++ .+...||++++|. +|++++.|++.
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~-~GkIv~~G~~~ 228 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLH-YGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEE-CCEEEEECCHH
Confidence 9999999999998777999999999986 5778899999998 58999998763
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=305.36 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=154.9
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~lt 789 (1065)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++.+|
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 4579999999999999999999999999999999999877 568999999987642 235567999999988888999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
|+||+.+..... . . ...++++++.+++.+..+... ..||+|||||++|||+|+.+|++|+|||||+|
T Consensus 91 v~~~~~~~~~~~--~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 91 LRENCLYDIHFS--P----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred HHHHHHHHHhcC--c----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 999998864211 1 1 235788999999876655443 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEE
Q 001507 870 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 911 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~ 911 (1065)
||+.++..+.+.|++++++|.|||++||++. ....+|..+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999998777999999999975 345566543
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=317.12 Aligned_cols=216 Identities=26% Similarity=0.379 Sum_probs=164.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.++.. ...+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++
T Consensus 4 ~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 4 EHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred EEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEE
Confidence 3445444321 246999999999999999999999999999999999999775 999999998764321 245699
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh--C
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--G 161 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l--g 161 (1065)
|++|++.+++ .||+||+.+... . ...+...+.. + ....++.++.+ +
T Consensus 80 ~~~q~~~~~~-~tv~~nl~~~~~--~--~~~~~~~~~~------------------~---------~~~~~~~l~~l~~~ 127 (237)
T cd03252 80 VVLQENVLFN-RSIRDNIALADP--G--MSMERVIEAA------------------K---------LAGAHDFISELPEG 127 (237)
T ss_pred EEcCCchhcc-chHHHHhhccCC--C--CCHHHHHHHH------------------H---------HcCcHHHHHhCccc
Confidence 9999998765 699999977421 0 0000000000 0 00123444444 4
Q ss_pred CcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchH
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~ 241 (1065)
+....+. .+.+|||||||||+||||++.+|++++|||||+|||+.++..+.+.|++++ . +.+|++++|+.++
T Consensus 128 ~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~--~~tiii~sH~~~~ 199 (237)
T cd03252 128 YDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A--GRTVIIIAHRLST 199 (237)
T ss_pred ccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C--CCEEEEEeCCHHH
Confidence 4433333 345799999999999999999999999999999999999999999999885 2 4667778999998
Q ss_pred HHhhcccEEEecCCcEEEEcCcchHH
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+. .||++++|++|++++.|+++++.
T Consensus 200 ~~-~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 200 VK-NADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred HH-hCCEEEEEECCEEEEEcCHHHHH
Confidence 85 69999999999999999987764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=273.66 Aligned_cols=214 Identities=28% Similarity=0.336 Sum_probs=175.1
Q ss_pred HHHHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCC--CC------
Q 001507 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EF------ 76 (1065)
Q Consensus 5 ~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~--~~------ 76 (1065)
.++++.++++.. ++|-||+++.++|+.+.++||||+|||||++.|.=+.-| .+|+..+.|...+ +.
T Consensus 4 rv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 4 QLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred EEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccccccccCccHHHH
Confidence 356677777643 589999999999999999999999999999999754444 4999998875432 11
Q ss_pred -CCCceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHH
Q 001507 77 -VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155 (1065)
Q Consensus 77 -~~~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 155 (1065)
..++.+|+|+|+-.++|++||.||+.-+. ++ .+.+.+.+...++.+
T Consensus 78 ~~lr~~vgmvfqqy~lwphltv~enlieap-~k--------------------------------v~gl~~~qa~~~a~e 124 (242)
T COG4161 78 RDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CR--------------------------------VLGLSKDQALARAEK 124 (242)
T ss_pred HHHHHhhhhhhhhhccCchhHHHHHHHhhh-HH--------------------------------HhCCCHHHHHHHHHH
Confidence 13467999999999999999999996532 11 011122233445788
Q ss_pred HHHHhCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEe
Q 001507 156 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 235 (1065)
Q Consensus 156 ~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~ 235 (1065)
+|+.+.|.+.+|.. +-.|||||+|||+|||||+.+|+||++||||++||++-..++++.+++++.. |.|-+++
T Consensus 125 llkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t--gitqviv 197 (242)
T COG4161 125 LLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET--GITQVIV 197 (242)
T ss_pred HHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 99999999988764 3469999999999999999999999999999999999999999999999863 5555668
Q ss_pred cCCchHHHhhcccEEEecCCcEEEEcCcc
Q 001507 236 LQPAPEAYELFDDVILLSEGQIVYQGPRV 264 (1065)
Q Consensus 236 ~~~~~~~~~~~D~v~~l~~G~i~~~G~~~ 264 (1065)
+|..+.+...+.+|+.|.+|+|++.|+.+
T Consensus 198 thev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 198 THEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred EeehhHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999999999999999999864
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=278.15 Aligned_cols=196 Identities=24% Similarity=0.365 Sum_probs=167.4
Q ss_pred cceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCCC---CceEEEEccccccCC
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 93 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~---~~~~~yv~Q~~~~~~ 93 (1065)
....+|+++||.+.+||..+|.||||||||||+|+++.+.+|+ +|++++.|+++....+ +.+++||.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3457999999999999999999999999999999999999876 9999999999877643 568999999999998
Q ss_pred CCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCcccccccccCc
Q 001507 94 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 173 (1065)
Q Consensus 94 ~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 173 (1065)
. ||++|+.|..+.+.... + .......|+.++|++..- ++
T Consensus 91 ~-tVeDNlifP~~~r~rr~--d----------------------------------r~aa~~llar~~l~~~~L----~k 129 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP--D----------------------------------RAAALDLLARFALPDSIL----TK 129 (223)
T ss_pred c-chhhccccchHHhccCC--C----------------------------------hHHHHHHHHHcCCchhhh----cc
Confidence 6 99999999766542111 0 122556788888876321 23
Q ss_pred ccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcccEEEec
Q 001507 174 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 253 (1065)
Q Consensus 174 ~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D~v~~l~ 253 (1065)
.+..||||||||++|+|.|.-.|+||+||||||+||..+.+.|-+.+.++.+. ....++-++|+-++..+.||+++-+.
T Consensus 130 ~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~-q~vAv~WiTHd~dqa~rha~k~itl~ 208 (223)
T COG4619 130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE-QNVAVLWITHDKDQAIRHADKVITLQ 208 (223)
T ss_pred hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhh-hceEEEEEecChHHHhhhhheEEEec
Confidence 45579999999999999999999999999999999999999999999998764 46778889999999999999999999
Q ss_pred CCcE
Q 001507 254 EGQI 257 (1065)
Q Consensus 254 ~G~i 257 (1065)
.|++
T Consensus 209 ~G~~ 212 (223)
T COG4619 209 PGHA 212 (223)
T ss_pred cCcc
Confidence 9876
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=317.57 Aligned_cols=196 Identities=27% Similarity=0.378 Sum_probs=154.7
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 789 (1065)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999876 568999999987532 233457999999988776 69
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccC-------cccCCCCCCCCHHHHHHHHHHHHHHhCCCcee
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~ 862 (1065)
|+||+.+....+ ... ..++.++..++.+..+. .. ...+..|||||||||+|||+|+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLV-GERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceee-ccCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998743211 111 12222333333221111 11 11236899999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|.+ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7999999999986 34 47999999985 789988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=318.36 Aligned_cols=221 Identities=26% Similarity=0.357 Sum_probs=173.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC-----ceeEEEEECCccCCCCC---C
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-----QVSGKITYNGHGFKEFV---P 78 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~-----~~~G~i~~~g~~~~~~~---~ 78 (1065)
+++++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++.... .
T Consensus 5 ~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 5 DHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 44555443 2469999999999999999999999999999999999987630 12899999998765432 2
Q ss_pred CceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHH
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~ 158 (1065)
++.++|++|++..++.+||+||+.++........ .. .. ......++++++
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~--~~-------------~~---------------~~~~~~~~~~l~ 131 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRA--GA-------------LT---------------HRDGEIAWQALA 131 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhccccccccc--cc-------------CC---------------HHHHHHHHHHHH
Confidence 3458999999866667899999987532100000 00 00 001223678899
Q ss_pred HhCCcccccccccCcccccCchhhhhhHHHHHHHh---------cCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCC
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229 (1065)
Q Consensus 159 ~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~---------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~ 229 (1065)
.+||++..++.+ ..|||||||||+|||||+ .+|++++|||||+|||+.++..+.+.|+++.+. .+
T Consensus 132 ~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~ 205 (272)
T PRK13547 132 LAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD-WN 205 (272)
T ss_pred HcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-cC
Confidence 999987665544 469999999999999999 599999999999999999999999999998653 25
Q ss_pred EEEEEecCCchHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 230 ~~ii~~~~~~~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
++|++++|+.+++.++||++++|++|++++.|+.+++
T Consensus 206 ~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 206 LGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 6777799999999999999999999999999987765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=322.76 Aligned_cols=207 Identities=20% Similarity=0.332 Sum_probs=165.9
Q ss_pred eecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CCCceEEEEcccccc
Q 001507 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 91 (1065)
Q Consensus 19 ~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~~~~~~yv~Q~~~~ 91 (1065)
..+|+|+||+|++||+++|+||||||||||+++|+|... |..+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 459999999999999999999999999999999999754 2112499999999876431 124579999999987
Q ss_pred CCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCCc----cccc
Q 001507 92 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCAD 167 (1065)
Q Consensus 92 ~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~ 167 (1065)
++. ||+||+.++....+.... ...+..+.++++.+|+. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhhHhh
Confidence 774 999999886432211000 00112356677777774 2233
Q ss_pred ccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCchHHHhhcc
Q 001507 168 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247 (1065)
Q Consensus 168 t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~D 247 (1065)
+ .+..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.+|++++|+.+++.++||
T Consensus 178 ~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~---~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 178 K-----NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG---SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998853 3677789999999999999
Q ss_pred cEEEecCCcEEEEcCcchHH
Q 001507 248 DVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 248 ~v~~l~~G~i~~~G~~~~~~ 267 (1065)
++++|++|++++.|+++++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999987763
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=357.23 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=172.0
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCCceeEEEEECCccCCCCC---CCceEE
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSA 83 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 83 (1065)
+++++.+++. +.++|+|+|++++|||.++|+||||||||||+++|+|.+.|+ +|+|.+||.++.+.. .++.++
T Consensus 342 ~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 342 NNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhhee
Confidence 4455555322 246999999999999999999999999999999999999876 999999999887653 356799
Q ss_pred EEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHhCC-
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL- 162 (1065)
Q Consensus 84 yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL- 162 (1065)
||+|++.+|+ .|++|||.++.. ... ++.+.++++..|+
T Consensus 418 ~v~Q~~~lf~-~ti~~Ni~~~~~----~~~------------------------------------~~~i~~al~~~~l~ 456 (574)
T PRK11160 418 VVSQRVHLFS-ATLRDNLLLAAP----NAS------------------------------------DEALIEVLQQVGLE 456 (574)
T ss_pred EEcccchhhc-ccHHHHhhcCCC----ccC------------------------------------HHHHHHHHHHcCCH
Confidence 9999999776 599999987521 000 1113344444444
Q ss_pred -----cccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecC
Q 001507 163 -----DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237 (1065)
Q Consensus 163 -----~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~ 237 (1065)
++..||.+|+++ .+||||||||++||||++++|+|++||||||+||+.++..+.+.|++..+ ++|+++++|
T Consensus 457 ~~i~~p~GldT~vge~g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~---~~tviiitH 532 (574)
T PRK11160 457 KLLEDDKGLNAWLGEGG-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ---NKTVLMITH 532 (574)
T ss_pred HHHcCccccCchhcCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC---CCEEEEEec
Confidence 456799999864 57999999999999999999999999999999999999999999998742 455656778
Q ss_pred CchHHHhhcccEEEecCCcEEEEcCcchHHH
Q 001507 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 238 ~~~~~~~~~D~v~~l~~G~i~~~G~~~~~~~ 268 (1065)
..+.+. .||+|++|++|++++.|+++++.+
T Consensus 533 r~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 533 RLTGLE-QFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred ChhHHH-hCCEEEEEeCCeEEEeCCHHHHHh
Confidence 877664 599999999999999999988864
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=317.50 Aligned_cols=217 Identities=21% Similarity=0.265 Sum_probs=172.5
Q ss_pred HhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcCCCC--ceeEEEEECCccCCCC-----CCCc
Q 001507 8 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPR 80 (1065)
Q Consensus 8 ~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~~~~--~~~G~i~~~g~~~~~~-----~~~~ 80 (1065)
.++++++ +..+|+|+||++++||+++|+|+||||||||+++|+|++.|.. +.+|+|.++|.++... ..++
T Consensus 13 ~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 89 (261)
T PRK14263 13 LDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRR 89 (261)
T ss_pred eEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhh
Confidence 3444443 3569999999999999999999999999999999999987521 2489999999886431 2245
Q ss_pred eEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHHh
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l 160 (1065)
.++|++|++.++ .+|++||+.++...... . ......++++++.+
T Consensus 90 ~i~~v~q~~~~~-~~tv~enl~~~~~~~~~----~-------------------------------~~~~~~~~~~l~~~ 133 (261)
T PRK14263 90 YIGMVFQQPNPF-SMSIFDNVAFGLRLNRY----K-------------------------------GDLGDRVKHALQGA 133 (261)
T ss_pred ceEEEecCCccc-cccHHHHHHHHHhhcCc----h-------------------------------HHHHHHHHHHHHHc
Confidence 699999999877 58999999886432210 0 00012367778888
Q ss_pred CCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCch
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~~ 240 (1065)
||.+..+... +...+.||||||||++|||||+.+|++++|||||+|||+.++.++++.|+++.+ ++++++++|+.+
T Consensus 134 ~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~~ 209 (261)
T PRK14263 134 ALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNMQ 209 (261)
T ss_pred CCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHH
Confidence 8864322222 234567999999999999999999999999999999999999999999998842 367777999999
Q ss_pred HHHhhcccEEEec--------CCcEEEEcCcchHH
Q 001507 241 EAYELFDDVILLS--------EGQIVYQGPRVSVL 267 (1065)
Q Consensus 241 ~~~~~~D~v~~l~--------~G~i~~~G~~~~~~ 267 (1065)
++.++||++++|+ +|++++.|+.+++.
T Consensus 210 ~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 210 QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999999995 89999999987764
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=309.52 Aligned_cols=191 Identities=25% Similarity=0.297 Sum_probs=157.0
Q ss_pred eeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEEC--Cc--cCCc---cc----ccceEEEEcCC
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS--GY--PKRQ---ET----FARISGYCEQN 781 (1065)
Q Consensus 713 ~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~--g~--~~~~---~~----~~~~~~~v~q~ 781 (1065)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |. ++.. .. .++.+||++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 579999999999999999999999999999999999876 468999998 42 3221 11 23568999999
Q ss_pred CCCCCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCc
Q 001507 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSI 860 (1065)
Q Consensus 782 ~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~i 860 (1065)
+.+++.+||+|++.+..... ........+.+.++++.+++.+. .+.. +..||||||||++|||||+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998764322 12223334567888999998653 3332 357999999999999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcCeEEEEe
Q 001507 861 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 914 (1065)
Q Consensus 861 l~lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~~~l~ 914 (1065)
|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+...+|+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999777999999999965 4556899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=300.82 Aligned_cols=190 Identities=25% Similarity=0.408 Sum_probs=167.6
Q ss_pred eeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 718 ~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
+++|..+.-.++||-|+||||||||+|+|+|+.. +.+|.|.+||.-..+ ...+|++|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 5677777657999999999999999999999987 579999999975321 2357889999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 870 (1065)
Q Consensus 791 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsgL 870 (1065)
+-||.|+...- .....+++.+.||+.++.++.. ..|||||||||+|+|||++.|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999975321 2334688999999999998865 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 871 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 871 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
|...+.+++-.|++++++ ...|+.+||.+. |+.+++|++++|. +|++...|+.
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le-~GkV~A~g~~ 213 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLE-NGKVKASGPL 213 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEec-CCeEEecCcH
Confidence 999999999999999876 889999999986 8999999999998 5899999986
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=318.58 Aligned_cols=220 Identities=21% Similarity=0.286 Sum_probs=169.7
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++ +..+|+|+||++++||+++|+|+||||||||+++|+|.+. +..+.+|+|.++|.++... ..+
T Consensus 25 ~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 25 KDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 44555443 2469999999999999999999999999999999999764 2113599999999887432 124
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++. ||+||+.++...... ... ...+..+++.++.
T Consensus 102 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~-------------------------------~~~~~~~~~~l~~ 147 (268)
T PRK14248 102 REIGMVFQKPNPFPK-SIYNNITHALKYAGE--RRK-------------------------------SVLDEIVEESLTK 147 (268)
T ss_pred ccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcH-------------------------------HHHHHHHHHHHHH
Confidence 579999999988875 999999875432110 000 0001225666777
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+++.+...... ++.+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|++++|+.
T Consensus 148 ~~l~~~~~~~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~ 223 (268)
T PRK14248 148 AALWDEVKDRL-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE---EYSIIIVTHNM 223 (268)
T ss_pred cCCCcchHHHH-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc---CCEEEEEEeCH
Confidence 77742110111 233457999999999999999999999999999999999999999999999853 35777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchHH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~~ 267 (1065)
+++.++||++++|++|++++.|+.+++.
T Consensus 224 ~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 224 QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999887663
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=317.16 Aligned_cols=219 Identities=19% Similarity=0.272 Sum_probs=168.5
Q ss_pred HHhhhhcCCccceecccCceEEEeCceEEEEecCCCCChHHHHHHHhcCcC--CCCceeEEEEECCccCCCC-----CCC
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPP 79 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~l~G~~GsGKSTLl~~l~G~~~--~~~~~~G~i~~~g~~~~~~-----~~~ 79 (1065)
+++++.++. +.+|+|+||++++||+++|+|+||||||||+++|+|... |..+.+|+|.++|.++... ..+
T Consensus 9 ~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 85 (252)
T PRK14255 9 SDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLR 85 (252)
T ss_pred EeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhc
Confidence 455555532 469999999999999999999999999999999999864 3212489999999876421 224
Q ss_pred ceEEEEccccccCCCCCHHHHHHHHhhccCCCCcchhhHHHHHHHHhhCCCCCchhHHHHhhhhccCCcchhHHHHHHHH
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~~~yv~Q~~~~~~~lTv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 159 (1065)
+.++|++|++.+++ .||+||+.+.....+... .+ ..+..+.+.++.
T Consensus 86 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~ 131 (252)
T PRK14255 86 KQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKD-KA--------------------------------VLDEAVETSLKQ 131 (252)
T ss_pred CeEEEEECCCccCC-CcHHHHHHHHHHHcCCCC-HH--------------------------------HHHHHHHHHHHH
Confidence 57999999998887 699999988643221100 00 001124455666
Q ss_pred hCCcccccccccCcccccCchhhhhhHHHHHHHhcCCeEEEEeCCCCCCChHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~~t~vg~~~~~~LSGGqkqRv~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~~~~~~~ii~~~~~~ 239 (1065)
+++........ +..+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+.
T Consensus 132 ~~l~~~i~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~ 207 (252)
T PRK14255 132 AAIWDEVKDHL-HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSM 207 (252)
T ss_pred cCCccchhhHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCH
Confidence 66532111111 233457999999999999999999999999999999999999999999999854 3 5777799999
Q ss_pred hHHHhhcccEEEecCCcEEEEcCcchH
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSV 266 (1065)
Q Consensus 240 ~~~~~~~D~v~~l~~G~i~~~G~~~~~ 266 (1065)
+++.+.+|+|++|++|+++..|++.++
T Consensus 208 ~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 208 HQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999988765
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=312.92 Aligned_cols=186 Identities=25% Similarity=0.370 Sum_probs=157.7
Q ss_pred ceeEeeeeeeEEeCCeEEEEEcCCCCcHHHHHHHHHCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCC--CC
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG--LT 789 (1065)
Q Consensus 712 ~~~il~~vs~~i~~g~~~~i~G~nGaGKsTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~--lt 789 (1065)
++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|. ..++|++|++.+++. .|
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK--------LRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--------cCEEEeccccccccccChh
Confidence 4579999999999999999999999999999999999876 56899999872 358999999877665 47
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCccccCcccCCCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 869 (1065)
Q Consensus 790 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGqrqr~~ia~~l~~~p~il~lDEPtsg 869 (1065)
+.+++.+. + ... .+.+.++++.+++.+..+... ..||||||||++|||+|+.+|++|+|||||+|
T Consensus 86 ~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 150 (251)
T PRK09544 86 VNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQG 150 (251)
T ss_pred HHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 78876532 1 111 234678899999987766543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcCeEEEEecCcEEEEeCCC
Q 001507 870 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 870 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..|+.
T Consensus 151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~~ 204 (251)
T PRK09544 151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGTP 204 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCCH
Confidence 9999999999999998765 899999999986 5778899999995 4 68888875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1065 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-14 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 7e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 8e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 3e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 9e-07 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 7e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 8e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 3e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1065 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-26 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-24 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 7e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-15 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-23 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 8e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 9e-15 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 9e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-09 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-08 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-17 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-16 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-10 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 4e-04 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-15 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-10 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-06 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 6e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 9e-12 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-08 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-11 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 8e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-04 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 4e-07 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-10 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-07 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-04 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-05 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 7e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-09 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 5e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 6e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-07 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-07 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-04 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-06 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-04 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-05 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-05 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 5e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 8e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 34/218 (15%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
L + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 773 RISGYCEQNDIHSPGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSL 827
+ G+ Q +VL+ +L P + + ++ + LT L
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTHL 121
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 886
+ LS QR+ + IA + + ++ +DEPTS LD IV+ + ++
Sbjct: 122 AKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ T+V T HQP+ + ++ L + + G
Sbjct: 177 SQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 55/269 (20%)
Query: 1 MTEAL-LRQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 58
M +AL + L Y+ + L+ + + +LG GK+TLL L G
Sbjct: 1 MNKALSVENLGFYYQAEN---FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 59 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 118
GKI ++ +V Q +V + V M
Sbjct: 58 I---QGKIEVY----------QSIGFVPQFFSSPFAYSVLDI---------VL----M-- 89
Query: 119 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 178
G + +FA V + L L A +
Sbjct: 90 ---------GRST------HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----L 129
Query: 179 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238
SGGQ++ + + +++ +DE ++ LD + ++ L ++ + T V + QP
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
Query: 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267
+ + + +LL++ + G ++L
Sbjct: 190 N-QVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCE 779
G + L+G +GAGKTT + +++ + + G + + G +E ++ Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 780 QNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
+ + +E L F A S E+E VE E+ L +
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFYASSSS-EIEEM---VERATEIAGLGEKIKDRVS----- 145
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
S ++L IA L+ NP + +DEPTSGLD A V + ++ G TI+ + H
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 56/254 (22%), Positives = 85/254 (33%), Gaps = 62/254 (24%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-- 75
K IL +S I + L+GP +GKTT L ++ + SG +T G E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83
Query: 76 --------FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 127
++P AY M E L F S E+
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEM---- 126
Query: 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 187
VE +I GL V S G ++L
Sbjct: 127 -------------------------VERATEIAGLGEKIKDRV-----STYSKGMVRKLL 156
Query: 188 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 247
L+ R+ +DE ++GLD ++ K LK +++ +G T++ E L D
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCD 214
Query: 248 DVILLSEGQIVYQG 261
+ L+ G IV G
Sbjct: 215 RIALIHNGTIVETG 228
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 32/223 (14%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIE-GDIYISGYPKRQETF 771
L ++G R G + LVG +GAGK+TL+ +AG G I+ + + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--L 71
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
A Y Q V L + +T+ + +V + L G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLNDVAGALALDDKLGRS 123
Query: 832 IGLPGINGLSTEQRKRLTIA-------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 885 IVNTGRTIVCTIHQPSIDI---FESFDELLFMKRGGELIYAGP 924
+ G IV + H D+ +K GG+++ +G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 52/291 (17%), Positives = 86/291 (29%), Gaps = 94/291 (32%)
Query: 1 MTEAL-LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 59
M+ + L+ + T L LSG +R + L+GP +GK+TLL +AG
Sbjct: 1 MSIVMQLQDV----AES---TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG- 52
Query: 60 LQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 116
G I + G + + AY+SQQ V L
Sbjct: 53 ---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL--------------- 94
Query: 117 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176
L + ++ + + L LD
Sbjct: 95 --TLHQH-------DKTRTEL---------------LNDVAGALALDDKLGRSTNQ---- 126
Query: 177 GISGGQKKRL--------TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 228
+SGG+ +R+ T + ++L +DE N LD + +
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLDEPMNSLD----------VAQQSALDK 174
Query: 229 --------GTTVISLL----QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
G ++ A LL G+++ G R VL
Sbjct: 175 ILSALSQQGLAIVMSSHDLNHTLRHA----HRAWLLKGGKMLASGRREEVL 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 50/240 (20%), Positives = 111/240 (46%), Gaps = 25/240 (10%)
Query: 698 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 757
+ ++L Q G ++ +L ++ G L G++GAGKTTL+++L + G
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSG 76
Query: 758 DIYISGYPKRQETF------ARISGYCEQNDIH---SPGLTVLESLL--FSAWLRLPSEI 806
+ + G + + I G+ + G V++ ++ + + +I
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 807 ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866
+ + R ++++LV +++ + IG LST +++R+ IA L+ P ++ +DEP
Sbjct: 135 D-DEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 867 TSGLDARAAAIVMRTVRNIVNTGR--TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+GLD A ++ + ++ ++ ++ H +I +F ++L +K G+ I G
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 57/278 (20%), Positives = 100/278 (35%), Gaps = 54/278 (19%)
Query: 1 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 58
+ L+ Q+ + + TIL +S I +L G +GKTTLL L
Sbjct: 17 GSHMLIQLDQIGRMKQGK---TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--- 70
Query: 59 HLQVSGKITYNGHGFKEFVPPRTSA-----YVSQ---QDWQVAEMTVRETLDFAGQCQGV 110
SG + G + + +VS + +Q E V + V
Sbjct: 71 EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGE-RVIDV---------V 120
Query: 111 GS-KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 169
S + I + DE + ++K++G+ A
Sbjct: 121 ISGAFKSI-------GVYQDIDDEIRNE---------------AHQLLKLVGMSAKAQQY 158
Query: 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229
+G +S G+K+R+ L+G +VL +DE + GLD ++ L + +
Sbjct: 159 IGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213
Query: 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 267
+I + E F ++LL +GQ + QG +L
Sbjct: 214 LAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 8e-22
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 781
G + G +G GKTTL+ ++ + +G+I +G P + +I + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGKI-FFLPEE 86
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841
I ++V + L A L ++ + + + +E VE+ L + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK------LGELS 135
Query: 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 900
+R+ +A L+ N I +D+P +D + V++++ I+ G I+ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 901 IDIFESFDELLFMKRG 916
D + +
Sbjct: 193 --ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 9e-15
Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 64/248 (25%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE---- 75
+L+ ++ I + GP GKTTLL ++ L + G+I YNG +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGK 79
Query: 76 --FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
F+P +++V + L + G+K ++
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVA-------------------SLYGVKVNK 112
Query: 134 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 193
+ + ++ + + L +S G +R+ L+
Sbjct: 113 NE-----------------IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLL 149
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 253
A + +D+ +D + ++++K + + G +IS + E D L
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIIS----SREELSYCDVNENLH 204
Query: 254 EGQIVYQG 261
+
Sbjct: 205 KYSTKIDK 212
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 49/215 (22%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARISGYCEQN-D 782
G ++G +G+GKTTL+ ++G G+I+I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 783 IHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS---------LSGALI 832
+ G+TV + + L+ L ++ E+++ ++L LS
Sbjct: 83 AYEIGVTVNDIVYLYEELKGLDRDL--------FLEMLKALKLGEEILRRKLYKLSA--- 131
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 892
G Q + ++ L + P IV +DEP +DA ++ R ++ G+
Sbjct: 132 ------G----QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEG 178
Query: 893 VCTIHQPSIDIFESF---DELLFMKRGGELIYAGP 924
+ H ++ + + G L
Sbjct: 179 ILVTH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 63/255 (24%)
Query: 11 IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 70
G + L++++ + ++LGP SGKTTLL A++G L SG I NG
Sbjct: 10 TLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL----LPYSGNIFING 64
Query: 71 HGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
++ Y + + +TV + + + +G+ R+
Sbjct: 65 MEVRKI--RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDL---- 107
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 185
++K L L +E+L+ +S GQ
Sbjct: 108 -----------------------FLEMLKALKLG--------EEILRRKLYKLSAGQSVL 136
Query: 186 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245
+ T L ++ +DE +D++ + I +Y+K G I +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-----GKEGILVTHELDMLNLY 191
Query: 246 FDDVILLSEGQIVYQ 260
+ G +
Sbjct: 192 KEYKAYFLVGNRLQG 206
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 9e-18
Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 772
+L G F + ++G +G GKTTL+ +LAG + G + +S K Q+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKPQKIAP 424
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 825
+ G TV + LF ++ + F +V++ + +
Sbjct: 425 KFPG------------TVRQ--LFFK--KIRGQFL---NPQFQTDVVKPLRIDDIIDQEV 465
Query: 826 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 884
LSG G + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 466 QHLSG---------G----ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 885 IV-NTGRTIV 893
+ + +T
Sbjct: 513 FILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG---DIYISGYPKRQETFARISGYC 778
RPG + LVG +G GK+T + +LAG + G + I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 779 EQND--------IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
E + + + + + L ++ +E V+ +++++L ++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
I LS + +R I + V + DEP+S LD + + +R+++ +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 891 TIV 893
++
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 76/291 (26%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L+ G S + +++G +GKTTL+ LAG L G+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQDIPKL---------- 413
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
+ Q+ TVR+ +KI G +
Sbjct: 414 NVSMKPQKIAPKFPGTVRQLFF---------------------KKIRGQFLNPQ------ 446
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
++K L +D D V +SGG+ +R+ L PA +
Sbjct: 447 -----------FQTDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYL 490
Query: 201 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILLSE 254
+DE S LDS K ++ T + A L D VI+
Sbjct: 491 IDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIM------ATYLADKVIVFEG 543
Query: 255 GQIV--YQGPRVSVLD----FFASMGFSC-PKRKNVADFLQEVTSKKDQEQ 298
+ S+L F ++ + + + ++ S+ D+EQ
Sbjct: 544 IPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQMDKEQ 594
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 54/273 (19%), Positives = 81/273 (29%), Gaps = 83/273 (30%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
Y N KL L RP ++ L+G GK+T L LAG+ +L G+
Sbjct: 87 YSANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPE 139
Query: 72 GF----------------KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 115
K + Q + ++ + G+ +
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL----- 193
Query: 116 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 175
R EK V+ +KIL L+ V +
Sbjct: 194 ------RMEKSP-----------------------EDVKRYIKILQLEN-----VLKRDI 219
Query: 176 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 232
+ +SGG+ +R G V A V DE S+ LD I+ L V
Sbjct: 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-----PTKYV 274
Query: 233 I------SLLQPAPEAYELFDDVILLSEGQIVY 259
I S+L L D V ++ VY
Sbjct: 275 ICVEHDLSVLD------YLSDFVCIIYGVPSVY 301
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 48/228 (21%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 772
L NV+ G + G +G+GK+TL+ ++AG +I GD+ G K+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYEIR 77
Query: 773 RISGYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELT- 825
R G Q P V + + F+ + V++ ME V L
Sbjct: 78 RNIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDPV---PL--VKKAMEFVGLDF 128
Query: 826 ---------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
LSG G +++R+ IA +V P I+ +DEP GLD
Sbjct: 129 DSFKDRVPFFLSG---------G----EKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 877 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
++R V G+T++ H + D ++ +++ G+ ++ G
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 62/260 (23%)
Query: 13 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 72
RG + L+++S +I L+ G SGK+TLL +AG + SG + Y+G
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGE- 69
Query: 73 FKEFVPP--RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
++ R Q + Q V + + FA + +
Sbjct: 70 -RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPL------ 116
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 185
V+ M+ +GLD D +SGG+K+R
Sbjct: 117 -----------------------VKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRR 146
Query: 186 LT-TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEA 242
+ ++ P +L +DE GLD +++ ++ + G TVI +
Sbjct: 147 VAIASVIVHEP-DILILDEPLVGLDREGKTDLLRIVEKWKT----LGKTVILISHDIETV 201
Query: 243 YELFDDVILLSEGQIVYQGP 262
D V++L +G+ V+ G
Sbjct: 202 INHVDRVVVLEKGKKVFDGT 221
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
LV G + G + ++G +G GKTT +L G T EG + +I
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SL 827
Y Q + TV + +L S+ L T F EEV + + L L
Sbjct: 333 SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL 386
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
SG G + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 387 SG---------G----ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 888 TGRTIVCTI 896
+ + I
Sbjct: 434 ERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 18/181 (9%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGR---------KTGGIIEGDIYISGYPKRQETFARI 774
+ + ++G +G GKTT++ +LAG G E G + F +
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK-EIYNYFKEL 81
Query: 775 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 834
E +H S + + +R +EV EL+ +T+L
Sbjct: 82 -YSNELKIVHKIQYVEYASKFLKGTVN--EILTKIDERGKKDEVKELLNMTNLWN----- 133
Query: 835 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 894
N LS +RL +A L+ + D+P+S LD R + + +R ++ IV
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 895 T 895
Sbjct: 194 D 194
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-12
Identities = 58/324 (17%), Positives = 101/324 (31%), Gaps = 90/324 (27%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
L +G + + +LGP GKTT L G + G +T +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------Q 330
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
+Y Q+ + + TV++ L+ +
Sbjct: 331 ILSYKPQRIFPNYDGTVQQYLE---------------------------------NASKD 357
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
+ + E + K L L ++ V D +SGG+ ++L L A +
Sbjct: 358 ALSTSSWF----FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYV 408
Query: 201 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS--LLQPAPEAYELFDDVILLSEGQI 257
+D+ S+ LD Y + K +K TR T +I L + D +I+ +G+
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL----SIHDYIADRIIVF-KGEP 463
Query: 258 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV------------------TSKKDQEQY 299
G S + M +FL+E+ S D+ Q
Sbjct: 464 EKAGLATSPVTLKTGM----------NEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQK 513
Query: 300 WSNPYLPYRYISPGKFAEAFHSYH 323
Y + G H +H
Sbjct: 514 ERGDYYSMVLSTQGSIEGRHHHHH 537
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-09
Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 35/206 (16%)
Query: 28 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 87
+ + + +LG GKTT+L LAG + + K F Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF-- 78
Query: 88 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 147
++ E+ + + Q + ++ + + ++
Sbjct: 79 KELYSNELKIVH------KIQ----YVEYASKFLKGTVNEILTKIDERGK---------- 118
Query: 148 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 207
+ + ++L + + +SGG +RL L+ A V D+ S+
Sbjct: 119 -----KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 208 LDSSTTYQIIKYLKHSTRALDGTTVI 233
LD + K ++ L VI
Sbjct: 169 LDVRERMNMAKAIR---ELLKNKYVI 191
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-16
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 45/189 (23%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L G R G + +VG +G GKTT + +LAG T G +E D+ ++ K Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----Y 425
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 825
I TV E L +L S + E+++ + +
Sbjct: 426 IK--------AEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRNVE 470
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 471 DLSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
Query: 886 V-NTGRTIV 893
+ +T +
Sbjct: 518 MEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 31/223 (13%)
Query: 682 PFQPLSMAFGNINYFVDVPVELKQE-----GVLEDRLQLLVNVTGAFRPGVLTALVGVSG 736
PF +S+ V++P +L ++ GV L + G++ +VG +G
Sbjct: 80 PFNAISI--------VNLPEQLDEDCVHRYGVNAFVL----YRLPIVKDGMVVGIVGPNG 127
Query: 737 AGKTTLMDVLAGR----KTGGIIEGDIYISGYP--KRQETFARISGYCEQNDIHSPGLTV 790
GKTT + +LAG+ D I + + Q F R+ E + P
Sbjct: 128 TGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVD 186
Query: 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 850
L +R ++ + EEV++ +EL ++ + LS + +R+ I
Sbjct: 187 LLPKAVKGKVR--ELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAI 239
Query: 851 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 893
A L+ F DEP+S LD R V R +R + N G+ ++
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 71/275 (25%)
Query: 7 RQLRIYRGNRSK---LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS 63
R+ + K L+ G IR + ++GP GKTT + LAG
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTE 410
Query: 64 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 123
GK+ ++ + P E TV E +++++
Sbjct: 411 GKVEWDLT--VAYKPQYIK--------AEYEGTVYE----------------LLSKIDSS 444
Query: 124 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 183
+ + ++K LG+ D V D +SGG+
Sbjct: 445 KLNSNFY----------------------KTELLKPLGIIDLYDRNVED-----LSGGEL 477
Query: 184 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQP 238
+R+ L+ A + +DE S LD + + ++H + T V+ ++
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI-- 535
Query: 239 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 273
+ D +I+ EG+ G + + M
Sbjct: 536 ----DYVSDRLIVF-EGEPGRHGRALPPMGMREGM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 8e-10
Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 44/218 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
+ I++ + ++GP +GKTT + LAG+L +L + +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIR---- 157
Query: 80 RTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
+ Q ++ + + Q V D++ + + + +K +++
Sbjct: 158 ----AFRGNELQNYFERLKNGEIRPVVKPQYV----DLLPKAVKGKVRELLKKVDEVGK- 208
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
E ++K L L+ D + +SGG+ +R+ L+ A
Sbjct: 209 --------------FEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHF 249
Query: 199 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 233
F DE S+ LD ++ I+ L + +G V+
Sbjct: 250 YFFDEPSSYLDIRQRLKVARVIRRLAN-----EGKAVL 282
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 6e-16
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 768
V+ + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 769 -ETFARISGYCEQNDIHS-PGLTVLE-----------SLLFSAWLRLPSEIELETQRAFV 815
TF Q +TVLE S L S + + E E
Sbjct: 85 VRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-VEKA 134
Query: 816 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
+++E ++L+ L G LS Q K + I L+ NP ++ MDEP +G+ A
Sbjct: 135 FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 876 AIVMRTVRNIVNTGRTIV 893
+ V + G T +
Sbjct: 190 HDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 57/230 (24%)
Query: 19 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 78
LD +S + +TL++GP SGK+TL+ + G L G++ + P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEP 76
Query: 79 P--------RTSAYVSQQDWQVA----EMTVRETLDFAGQCQGVGSKYDMITELARREKI 126
RT +Q EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRT--------FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 128
Query: 127 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 186
++ K+F + ++ L L D G+ +SGGQ K +
Sbjct: 129 EMVE---------KAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLV 162
Query: 187 TTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 233
G L+ +++ MDE G+ + I + LK G T +
Sbjct: 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-----KGITFL 207
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-15
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 45/189 (23%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L G + G + +VG +G GKTT + +LAG T G IE D+ ++ P+ +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA--- 358
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 825
TV E L S + + E+++ + +
Sbjct: 359 -----------DYEGTVYE--LLSK-----IDASKLNSNFYKTELLKPLGIIDLYDREVN 400
Query: 826 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 401 ELSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 886 V-NTGRTIV 893
+ +T +
Sbjct: 448 MEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKR--QETFARISG- 776
+ G++ +VG +G GK+T + +LAG+ G D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 777 ---------YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
Y + G V+E L + + +EEV++ +EL ++
Sbjct: 105 EIRPVVKPQYVDLIPKAVKG-KVIELL------------KKADETGKLEEVVKALELENV 151
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
I LS + +R+ IA L+ N + F DEP+S LD R R +R +
Sbjct: 152 LEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 888 TGRTIV 893
G++++
Sbjct: 207 EGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 88/297 (29%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
L+ G I+ + ++GP GKTT + LAG GKI ++ + P
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT--VAYKPQY 355
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
A E TV E +++++ + + E
Sbjct: 356 IKA--------DYEGTVYE----------------LLSKIDASKLNSNFYKTE------- 384
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
++K LG+ D V + +SGG+ +R+ L+ A +
Sbjct: 385 ---------------LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYL 424
Query: 201 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQPAPEAYELFDDVILLSEG 255
+DE S LD + + ++H + T V+ ++ + D +++ EG
Sbjct: 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EG 477
Query: 256 QIVYQGPRVSVLD-------FFASMGFSCPK-------RKNVADFLQEVTSKKDQEQ 298
+ G + + F AS+G + + R N S KD+EQ
Sbjct: 478 EPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEG------SVKDREQ 528
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 44/218 (20%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
+ +++ + ++GP +GK+T + LAG+L +L + + V
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-------CGDNDSWDGV-- 85
Query: 80 RTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
+ Q ++ + + Q V D+I + + + I +K ++
Sbjct: 86 --IRAFRGNELQNYFEKLKNGEIRPVVKPQYV----DLIPKAVKGKVIELLKKADETGK- 138
Query: 139 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 198
+E ++K L L+ + + +SGG+ +R+ L+ A
Sbjct: 139 --------------LEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATF 179
Query: 199 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 233
F DE S+ LD I+ L +G +V+
Sbjct: 180 YFFDEPSSYLDIRQRLNAARAIRRLSE-----EGKSVL 212
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYP--KRQET 770
L + + G +TA++G +G GK+TL GI+ G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN-----GILKPSSGRILFDNKPIDYSRKG 78
Query: 771 FARIS---GYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMEL 821
++ G Q+ P +V + + F A ++LP + E+ +R V+ ++
Sbjct: 79 IMKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED-EIR-KR--VDNALKR 130
Query: 822 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
+ L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 131 TGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 882 VRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ + G TI+ H + D + MK G +I G
Sbjct: 186 LVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 58/280 (20%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
L ++ I+ +T +LG GK+TL G L SG+I ++ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDY--SRKG 78
Query: 82 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
+ + D Q+ +V + + F + E+ +R
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-----EIRKR---------- 123
Query: 134 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELL 192
V+ +K G++ D +S GQKKR+ G L+
Sbjct: 124 -------------------VDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 193 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 252
+ P +VL +DE + GLD +I+K L + G T+I D+V ++
Sbjct: 160 MEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVM 217
Query: 253 SEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQE 289
EG+++ QG V + + P+ ++ + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-13
Identities = 89/553 (16%), Positives = 157/553 (28%), Gaps = 156/553 (28%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTL----LLALAGRLGHHLQVSGKITYNGHGF--- 73
+ D I+ + ++ + TL L V + N + F
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMS 96
Query: 74 ---KEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKY-----DMITELARR 123
E P T Y+ Q R+ L Q V +KY +L R
Sbjct: 97 PIKTEQRQPSMMTRMYIEQ----------RDRLYNDNQ---VFAKYNVSRLQPYLKL--R 141
Query: 124 EKIAGIKPDEDLDIF-MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI---S 179
+ + ++P +++ I + G KT + LD C V +M I +
Sbjct: 142 QALLELRPAKNVLIDGVLGS--G--KTWVA---------LDVCLSYKVQCKMDFKIFWLN 188
Query: 180 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239
+ E ++ + L N S IK HS + + +P
Sbjct: 189 LKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPY 243
Query: 240 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCP-----KRKNVADFLQEVTSKK 294
+ +V Q + + F SC + K V DFL T+
Sbjct: 244 ENCLLVLLNV----------QNAK--AWNAF---NLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 295 DQEQYWSNPYLPYRYISPGKFAEAFHSY--HTGKNLSEELAVPFDRRFNHPAALSTSKYG 352
+ S +P + Y ++L E+ +P LS
Sbjct: 289 ISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPREVLT------TNPRRLSI--IA 334
Query: 353 EKRSELLKTSFNW-QLLLMKRNSFIYVF-----------KFIQLLIV---ALITMTVF-- 395
E + L T NW + K + I F +L + A I +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 396 ------------FRTTMHHKTI-----DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLP 438
+H ++ + + + ++Y E+ + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEY 443
Query: 439 VLYKHRDL--HFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY-------DPNVVR 489
L HR + H+ + S L P ++ Y IG+ +
Sbjct: 444 AL--HRSIVDHYNIPKTF--DSDDLIPPY---LDQYF----YSHIGHHLKNIEHPERMTL 492
Query: 490 FSRQLLLYFFLHQ 502
F L + FL Q
Sbjct: 493 FRMVFLDFRFLEQ 505
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-10
Identities = 71/443 (16%), Positives = 134/443 (30%), Gaps = 117/443 (26%)
Query: 635 QAVVSKKE----LQERDR-----------RRKGENVVIELREYLQRSSSLNGKYFKQKGM 679
++++SK+E + +D K E +V +++++ +N K+
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIK 99
Query: 680 VLPFQPLSMAFGNINYFVD----VPVELKQEGVLEDRLQLLVNVTGAF---RPGVLTALV 732
QP SM D + V RLQ + + A RP +
Sbjct: 100 TEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 733 GVSGAGKTTL-MDVLAGRKTGGIIEGDIY-ISGYPKRQETFARISGYCEQNDIHSPG--L 788
GV G+GKT + +DV K ++ I+ ++ C +SP L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------------LKNC-----NSPETVL 199
Query: 789 TVLESLLF---SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQR 845
+L+ LL+ W R + + EL L L ++
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQA--ELRRL------------LKSKPY 243
Query: 846 KR-LTIAVEL--VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 902
+ L + L V N + + ++ T R T T S+D
Sbjct: 244 ENCLLV---LLNVQNAKAW------NAFNLSCKILL--TTRFKQVTDFLSAATTTHISLD 292
Query: 903 IFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPV 962
+ + + L + +L + E + P ++
Sbjct: 293 ----HHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNP------------RRLSIIA 334
Query: 963 EESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACLRK- 1021
E R G+ + ++ N + + SL+ P+ + F L+
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----------DRLSVFPPS 384
Query: 1022 -----QNLS-YWRNPQYTAVRFF 1038
LS W + + V
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVV 407
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 8e-09
Identities = 88/700 (12%), Positives = 171/700 (24%), Gaps = 205/700 (29%)
Query: 201 MDEISNGLDSSTTYQ-IIK-YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 258
MD + Y+ I+ + D V + + E D I+
Sbjct: 7 MDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDH--------II 55
Query: 259 YQGPRVSVLDFFASMGFSCPKRKN---VADFLQEVTSKKDQEQY-WSNPYLPYRYISPGK 314
VS F K V F++EV + Y + + P
Sbjct: 56 MSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSM 107
Query: 315 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNS 374
+ DR +N + KY R + LL ++
Sbjct: 108 MTRMYIEQR-------------DRLYNDNQVFA--KYNVSRLQPYLKLRQA-LLELRPAK 151
Query: 375 FIYVF------KFIQLLIVA-------LITMT--VFFRTTMHHKTIDDGGLYLGALYFSM 419
+ + K + + M +F+ + + + L L + +
Sbjct: 152 NVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 420 VIILFNGFTEVSMLVAKLPVLY---KHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 476
+T S + + + + S Y L+
Sbjct: 210 D----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLL-------- 248
Query: 477 TYYVIG--YDPNVVR-F---SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN----TFGS 526
V+ + F + LL + + + I + T
Sbjct: 249 ---VLLNVQNAKAWNAFNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 527 FAMLVVMA--LGGFIISRDSIP----KWWIWGFWVSPLMYAQNAASVNEFLGHSWD--KK 578
+ ++ L +P +P + A S+ + L WD K
Sbjct: 301 DEVKSLLLKYLD---CRPQDLPREVLT-------TNPRRLSIIAESIRDGLAT-WDNWKH 349
Query: 579 AGNSNFS---------LGEAILRQR----SLFPESYW--------YWIG---------VG 608
+ L A R+ S+FP S W V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 609 AMLGYTLLF--NALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIE----LREY 662
+ Y+L+ T + + + K E R +++ + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSI------YLELKVKLENEYALHRS----IVDHYNIPKTF 459
Query: 663 LQRSSSLNG--KYF--------KQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 712
+YF K M F + F++ +++ + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQ--KIRHDSTAWNA 516
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 772
++N TL + + I + D F
Sbjct: 517 SGSILN----------------------TLQQLKFYKPY--ICDNDPKYERLVNAILDFL 552
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 812
E+N I S +L L + + E + QR
Sbjct: 553 P---KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-08
Identities = 84/590 (14%), Positives = 162/590 (27%), Gaps = 178/590 (30%)
Query: 553 FWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAI---LRQRSLFPESYWYWIGVGA 609
FW + ++ V +F+ N F L I RQ S+ Y
Sbjct: 68 FW---TLLSKQEEMVQKFVEEVLRI---NYKF-LMSPIKTEQRQPSMMTRMY-------- 112
Query: 610 MLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSL 669
+ + L V +K + R + ++LR+ L
Sbjct: 113 ---------------IEQRDRLYNDNQVFAKYNVS---RLQP----YLKLRQALLELRP- 149
Query: 670 NGKYFKQKGM------VL------PFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLV 717
K G+ + ++ I +++++ E VLE +LL
Sbjct: 150 -AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLY 207
Query: 718 NVTGAF--RPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETF-- 771
+ + R + + + + L +L + + ++ ++ K F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNL 264
Query: 772 --------------ARISGYCEQN---DIHSPGLTVLESL-LFSAWL-----RLPSEIEL 808
+S + D HS LT E L +L LP E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--- 321
Query: 809 ETQRAFVEEVMELVELTSLSGALI--GLPGINGLSTEQRKRLTIAVEL---VANPSI--- 860
V S+ I GL + +LT +E V P+
Sbjct: 322 ------VLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 861 ------VFMDE---PTSGLDARAAAIVMRTVRNIVNT----------GRTIVCTIHQPSI 901
VF PT L ++ V +VN + +I +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 902 DIFESFDELLFMKRGGELI--YAGPLGSKSCELIK-----YF--------------EAVE 940
++ + + R ++ Y P S +LI YF E +
Sbjct: 434 ELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 941 GVPKIRPGYNPAAWM---LEVTSPVEESRLGV-----DFAEIYRR-----SNLFQRNREL 987
+ + ++ + S + + + Y+ ++R L
Sbjct: 492 LFRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYER---L 544
Query: 988 VESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQY-TAVR 1036
V ++ L+F K ++ L + L + A +
Sbjct: 545 VNAI---------LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-08
Identities = 84/548 (15%), Positives = 161/548 (29%), Gaps = 181/548 (33%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 75
R L L RP++ L+ G SGKT + L + ++ KI F
Sbjct: 141 RQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI------F-- 185
Query: 76 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR-EKIAGIKPDED 134
W + + C + +M+ +L + + + D
Sbjct: 186 --------------W----LNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 135 LDIFMKSFALGGQKTSLVVE--YIMKILGLD-------------TC-----------ADT 168
+I ++ ++ + L+ Y +L L +C D
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 169 LVGDEMLKGISGGQKKRLTTGELL--------------------VGPARV-LFMDEISNG 207
L LT E+ P R+ + + I +G
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 208 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG-QIVYQGPRVSV 266
L + ++ + K T ++ + +++L+PA E ++FD + + I P +
Sbjct: 341 LATWDNWKHVNCDKL-TTIIESS--LNVLEPA-EYRKMFDRLSVFPPSAHI----PT-IL 391
Query: 267 LDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGK 326
L S+ + + +V + ++ E+ S
Sbjct: 392 L----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----ESTI-----------SIP--- 429
Query: 327 NLSEELAVPFDRRFN-HPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLL 385
++ EL V + + H + + Y + KT + L+ + Y + I
Sbjct: 430 SIYLELKVKLENEYALHRSIV--DHY-----NIPKTFDSDDLIPPYLDQ--YFYSHI--- 477
Query: 386 IVALITMTVFFRTTMHH-KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHR 444
HH K I+ F MV + F F E K+ +H
Sbjct: 478 --------------GHHLKNIEHPERMTL---FRMVFLDFR-FLE-----QKI----RHD 510
Query: 445 DLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTY--YVIGYDPNVVRFSRQLLLYF-FLH 501
+W L+ L Y Y+ DP ++ R + FL
Sbjct: 511 S----TAW--NASGSILNTLQQLK--------FYKPYICDNDP---KYERLVNAILDFLP 553
Query: 502 QMSIGLFR 509
++ L
Sbjct: 554 KIEENLIC 561
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 6e-12
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQ 768
++L ++ + + G +++G SG+GK+TL+ +L T G +EG + +++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKE 75
Query: 769 ETFAR---ISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
+ R + G+ Q I P LT LE+++ +P + ++ E L+
Sbjct: 76 LSLLRNRKL-GFVFQFHYLI--PELTALENVI------VPMLKMGKPKKEAKERGEYLLS 126
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
L L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 ELGLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 884 NIVNTGRTIVCTIHQPSI 901
I G +IV H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 7e-12
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
LL + + G +G GK+TLM +A + G P ++E R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CR 496
Query: 774 ISGYCEQNDIHSPG-LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
Y E + + +VL+ + S + + + F +E++ + +++LSG
Sbjct: 497 T-VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAM-PISALSG--- 551
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
G + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 552 G----------WKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 45/267 (16%), Positives = 80/267 (29%), Gaps = 63/267 (23%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---------GHHLQVSGKITYNGH 71
+ D++ S ++GP +GK+TL+ L G L + +++ H
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA---YIKQH 744
Query: 72 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM------------ITE 119
F W+ RET+D A + M I
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 120 LARREKIAGIKPDEDLDI---------------------------FMKSFA--------- 143
+ R K E + ++S +
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMK 864
Query: 144 ---LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
GQ L + I + + +V ++G+SGGQK +L ++
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV 924
Query: 201 MDEISNGLDSSTTYQIIKYLKHSTRAL 227
+DE +N LD + + K LK +
Sbjct: 925 LDEPTNYLDRDSLGALSKALKEFEGGV 951
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 6e-06
Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 66/211 (31%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L+ ++ +R + GP GK+TL+ A+A QV G F
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG-----QVDG-----------FPTQE 493
Query: 81 --TSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI-KPDEDLD 136
+ YV D ++ +V + + + + T+ A ++K+ DE +
Sbjct: 494 ECRTVYVEHDIDGTHSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIA 543
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
+ + + SGG K +L ++ A
Sbjct: 544 MPISAL------------------------------------SGGWKMKLALARAVLRNA 567
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 227
+L +DE +N LD+ ++ YL
Sbjct: 568 DILLLDEPTNHLDTVNVAWLVNYLNTCGITS 598
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-12
Identities = 65/301 (21%), Positives = 105/301 (34%), Gaps = 94/301 (31%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 74
RS L+ ++ I L ++G GK++LL AL + +V G + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---- 66
Query: 75 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP--- 131
+ AYV QQ W + ++RE + F G + + + I+
Sbjct: 67 ------SVAYVPQQAW-IQNDSLRENILF-------GCQLEE----PYYRSV--IQACAL 106
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTG 189
DL+I G + T +G+ KG+ SGGQK+R
Sbjct: 107 LPDLEILP-----SGDR-------------------TEIGE---KGVNLSGGQKQR---- 135
Query: 190 ELLVGPAR--------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL----LQ 237
V AR LF D +S +D+ I + + L T I L +
Sbjct: 136 ---VSLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMS 190
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 297
P+ D +I++S G+I G +L + A+FL+ S
Sbjct: 191 YLPQV----DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHH 236
Query: 298 Q 298
Sbjct: 237 H 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L +T + G L A+VG G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 774 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 828
++ Y Q I + ++ E++LF + + + V++ L+ L L
Sbjct: 68 VA-YVPQQAWIQN--DSLRENILFG----------CQLEEPYYRSVIQACALLPDLEILP 114
Query: 829 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
IG G+N LS Q++R+++A + +N I D+P S +DA + V I
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--I 171
Query: 886 VNTG----RTIVCTIHQPSIDIFESFDELLFMKRG 916
G +T + H + D ++ M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 762
D +L N+ + + G + +VG SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 763 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 819
G+ R G Q +++L + + I L VE+V+
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-----------DNVLLNRSII--DNISLANPGMSVEKVI 116
Query: 820 ELVELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 866
+L +GA ++G G LS QR+R+ IA LV NP I+ DE
Sbjct: 117 YAAKL---AGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEA 172
Query: 867 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 897
TS LD + ++MR + I GRT++ H
Sbjct: 173 TSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 5e-11
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYP 765
E+ + L NV + G +++G SG+GK+T+++++ + T G I+ I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLD 73
Query: 766 KRQETFAR---ISGYCEQ--NDIHSPGLTVLES----LLFSAWLRLPSEIELETQRAFVE 816
+ T R I G+ Q N I P LT LE+ L+F + E +R +
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE-----ERR--K 123
Query: 817 EVMELVELTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
+E +++ L P N LS Q++R+ IA L NP I+ D+PT LD++
Sbjct: 124 RALECLKMAELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 876 AIVMRTVRNI-VNTGRTIVCTIHQPSI 901
+M+ ++ + G+T+V H ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 48/229 (20%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 762
D + L +V+ PG ALVG SGAGK+T++ D+ +G I I
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRID 114
Query: 763 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 819
G Q T A G Q +++LF+ + I A +EV
Sbjct: 115 GQDISQVTQASLRSHIGVVPQ-----------DTVLFNDTIA--DNIRYGRVTAGNDEVE 161
Query: 820 ELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTS 868
+ + A++ P G T+ +++R+ IA ++ P I+ +DE TS
Sbjct: 162 AAAQAAGIHDAIMAFP--EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATS 219
Query: 869 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917
LD + ++ + RT + H+ S + + D++L +K G
Sbjct: 220 ALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
T VG+ LK +SGG+K+R+ ++ ++ +DE ++ LD+S I L
Sbjct: 181 RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA- 238
Query: 227 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 261
+ TT++ S + A D ++++ +G IV +G
Sbjct: 239 -NRTTIVVAHRLSTVVNA-------DQILVIKDGCIVERG 270
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 47/202 (23%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQETFAR 773
L N++ + PG L+G +G+GK+TL+ ++ G+I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLNTEGEIQIDGV--------- 82
Query: 774 ISGYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMEL 821
S L + +FS R P+ + + + +V +
Sbjct: 83 --------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 822 VEL----TSLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
V L G L + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 876 AIVMRTVRNIVNTGRTIVCTIH 897
I+ RT++ V
Sbjct: 192 QIIRRTLKQ--AFADCTVILCE 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 88/259 (33%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 137
++ SQ W + T++E + F G YD R + IK +ED+
Sbjct: 70 RISFCSQFSW-IMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 195
F ++G+ GI SGGQ+ R +
Sbjct: 116 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 141
Query: 196 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 242
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 142 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 196
Query: 243 YELFDDVILLSEGQIVYQG 261
D +++L EG + G
Sbjct: 197 ----DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 39/211 (18%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 774 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 828
IS +C Q I T+ E+++F + V++ L E ++ +
Sbjct: 71 IS-FCSQFSWIMP--GTIKENIIFG----------VSYDEYRYRSVIKACQLEEDISKFA 117
Query: 829 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ +T + + ++ + D++L + G
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 89/260 (34%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 137
++ SQ W + T++E + +G YD R + IK +ED+
Sbjct: 100 RISFCSQNSW-IMPGTIKENI--------IGVSYDE----YRYRSV--IKACQLEEDISK 144
Query: 138 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 195
F ++G+ GI SGGQ+ R +
Sbjct: 145 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 170
Query: 196 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 242
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 171 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 225
Query: 243 YELFDDVILLSEGQIVYQGP 262
D +++L EG + G
Sbjct: 226 ----DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 773
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 774 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 828
IS +C QN I T+ E+++ ++ V++ L E ++ +
Sbjct: 101 IS-FCSQNSWIMP--GTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISKFA 146
Query: 829 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
+ +T + + ++ + D++L + G
Sbjct: 206 LMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 715 LLVNVT---GAFRPGV-------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 764
L V G FR V L+G +GAGK+ ++++AG G++ ++G
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGA 60
Query: 765 P-KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 823
R G+ Q+ P L+V ++ + LR +E + + V E+ E +
Sbjct: 61 DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRR---VREMAEKLG 115
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
+ L LS +R+R+ +A LV P ++ +DEP S +D +
Sbjct: 116 IAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 43/197 (21%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
+ L ++ G ALVG +G+GK+T+ D EGDI I G
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNV 83
Query: 767 RQETFARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 825
+ +N I S G+ +++LF+ ++ I A EEV++ +
Sbjct: 84 NKYN---------RNSIRSIIGIVPQDTILFNETIK--YNILYGKLDATDEEVIKATKSA 132
Query: 826 SLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARA 874
L + LP T +R+R+ IA L+ +P IV DE TS LD++
Sbjct: 133 QLYDFIEALP--KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 875 AAIVMRTVRNIVNTGRT 891
+ + V ++ RT
Sbjct: 191 EYLFQKAVEDLRK-NRT 206
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 167 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 226
DT+VG++ +K +SGG+++R+ L+ +++ DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK- 203
Query: 227 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 261
+ T +I S + A + +ILL++G+IV +G
Sbjct: 204 -NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 1e-09
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 48/192 (25%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 762
+D Q+L +++ +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 763 GYPKRQETFA----RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL-ETQRAFVEE 817
G P + +I G+ Q +S + + +R + E+
Sbjct: 63 GQPIDNISLENWRSQI-GFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTDED 108
Query: 818 VMELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEP 866
+ ++++L + +P + L+TE QR+RL IA + NP I+ +DE
Sbjct: 109 LWQVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 867 TSGLDARAAAIV 878
T+ LD+ + ++V
Sbjct: 167 TASLDSESESMV 178
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 55/191 (28%)
Query: 716 LVNVTGAFRPGVLTA---------------LVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 760
+ NV+ F+ G + A ++G SGAGKTT M ++AG G++Y
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELY 63
Query: 761 ISGY-----------PKRQET---FARISGYCEQNDIHSPGLTVLESLLFSAWLRL---- 802
P+ ++ F Q P LT E++ F L
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMS 113
Query: 803 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862
EI +R VEEV +++++ + L P LS Q++R+ +A LV +PS++
Sbjct: 114 KEEIR---KR--VEEVAKILDIHHV---LNHFPR--ELSGAQQQRVALARALVKDPSLLL 163
Query: 863 MDEPTSGLDAR 873
+DEP S LDAR
Sbjct: 164 LDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 89/305 (29%)
Query: 1 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 59
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG----- 53
Query: 60 LQV--SGKITYNG----HGFKEFVPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQ 108
L V +G++ ++ K VPP R V Q W A +T E + F
Sbjct: 54 LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ-TW--ALYPNLTAFENIAFP---- 106
Query: 109 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 168
L + +E I + VE + KIL +
Sbjct: 107 -----------L----TNMKMSKEE---IRKR------------VEEVAKILDIH---HV 133
Query: 169 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRA- 226
L + + +SG Q++R+ LV +L +DE SN LD+ ++ S RA
Sbjct: 134 L--NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN-LDAR--------MRDSARAL 182
Query: 227 -------LDGTTVISLLQPAPEAYELFDDVILLSEGQI--------VYQGPR-VSVLDFF 270
L G T++ + + + + D V +L +G++ +Y P + V
Sbjct: 183 VKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
Query: 271 ASMGF 275
+
Sbjct: 242 GEINE 246
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 46/208 (22%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 766
Q+L + + G ALVG SG GK+T + +++ G + I G
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV---------QLMQRLYDPLDGMVSIDGQDI 454
Query: 767 RQETF----ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMEL 821
R I G Q E +LF+ + E I + ++E+ +
Sbjct: 455 RTINVRYLREII-GVVSQ-----------EPVLFATTIA---ENIRYGREDVTMDEIEKA 499
Query: 822 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
V+ + ++ LP G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPS 900
+ A+V + GRT + H+ S
Sbjct: 560 ESEAVVQAALDKAR-EGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 766
+L ++ + G ALVG SG GK+T++ D +AG +++ G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 767 RQETFARISGYCEQNDIHS--PGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 821
+Q + Q I S P L ++ E++ + R+ S EE++
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRA 1144
Query: 822 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
+ ++ + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 873 RAAAIVMRTVRNIVNTGRTIVCTIH 897
+ +V + GRT + H
Sbjct: 1205 ESEKVVQEALDK-AREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 59/263 (22%), Positives = 102/263 (38%), Gaps = 73/263 (27%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 75
R ++ IL L+ ++ + L+G GK+T + L RL + + G ++ +G +
Sbjct: 400 RKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRL--YDPLDGMVSIDGQDIRT 456
Query: 76 FVPP--RTS-AYVSQQDWQVAE-----MTVRETLDFAGQCQGVGSKYDMITELARREKIA 127
R VSQ E T+ E + + + D I + +
Sbjct: 457 INVRYLREIIGVVSQ------EPVLFATTIAENIRYGRE----DVTMDEIEKAVK----- 501
Query: 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGI--SGGQKK 184
++ A ++IMK+ D TLVG+ +G SGGQK+
Sbjct: 502 ------------EANAY---------DFIMKLPHQFD----TLVGE---RGAQLSGGQKQ 533
Query: 185 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQP 238
R+ LV ++L +DE ++ LD+ + + L +A +G T I S ++
Sbjct: 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALD---KAREGRTTIVIAHRLSTVRN 590
Query: 239 APEAYELFDDVILLSEGQIVYQG 261
A D + G IV QG
Sbjct: 591 A-------DVIAGFDGGVIVEQG 606
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARISGYCEQND 782
R G + L+G SG+GKTT++ ++AG + +GD++I G R G QN
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNY 96
Query: 783 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 842
+TV +++ F + + E++ + V E++ + L S + + LS
Sbjct: 97 ALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP-----HELSG 148
Query: 843 EQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
Q++R+ +A L P ++ DEP + +D +
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 785
L+G SG+GK+TL+ +AG G IY + ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEK--------------DVTELPPKDRNV 77
Query: 786 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 831
P +TV +++ F L L EI+ ++ V EV +++ + L L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFP--LELRKAPREEID---KK--VREVAKMLHIDKL---L 127
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 881
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 128 NRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQ 780
PG + ++G SG GKTTL+ LAG + G I I R GY Q
Sbjct: 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87
Query: 781 NDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 838
P LTV ++ + + +R +E ++EL ++ L+G +
Sbjct: 88 E--GVLFPHLTVYRNIAYGLGNGKGRTAQ---ERQRIEAMLELTGISELAGRYP-----H 137
Query: 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
LS Q++R +A L +P ++ +DEP S LD +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 1 MTEAL-LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 59
MT AL + L N +L+D+S + P + ++G GKTTLL LA G
Sbjct: 1 MTAALHIGHLSKSFQNT---PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA---GFE 54
Query: 60 LQVSGKITYNGH---GFKEFVPP 79
SG+I+ +G +P
Sbjct: 55 QPDSGEISLSGKTIFSKNTNLPV 77
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 52/172 (30%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 785
L+G SG GKTT + ++AG + EG IY + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--------------RDVTYLPPKDRNI 85
Query: 786 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 831
P +TV E++ F L++ EI+ +R V EL+++ L L
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEID---KR--VRWAAELLQIEEL---L 135
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 881
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 136 NRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE----------Q 780
L+G SG GKTT + ++AG + G IYI + + Q
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 781 NDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 836
+ P +TV +++ F L+L EI+ QR V EV EL+ LT L L P
Sbjct: 89 SYALYPHMTVYDNIAFP--LKLRKVPRQEID---QR--VREVAELLGLTEL---LNRKPR 138
Query: 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 881
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 139 --ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-07
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 48/204 (23%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 762
++ +L ++ + G A VG+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 763 GYPKRQETFA----RISGYCEQNDIHSPGLTVL-ESLLFSAWLRLPSEIELETQRAFVEE 817
G+ + +I V +++LFS ++ I L A EE
Sbjct: 402 GHNIKDFLTGSLRNQIG-------------LVQQDNILFSDTVK--ENILLGRPTATDEE 446
Query: 818 VMELVELTSLSGALIGLP----------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867
V+E ++ + ++ LP G+ LS Q++RL+IA + NP I+ +DE T
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 868 SGLDARAAAIVMRTVRNIVNTGRT 891
S LD + +I+ + + RT
Sbjct: 506 SALDLESESIIQEALDVLSK-DRT 528
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 785
L+G SG GKTT + +LAG G+IY NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDV--------------LVNDIPPKYREV 77
Query: 786 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 831
P +TV E++ F LR E+E +R V E+ + + +L L
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVE---KR--VVEIARKLLIDNL---L 127
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 881
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 128 DRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 60/168 (35%)
Query: 730 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQETFARISGYCEQND 782
++G +GAGKT ++++AG G I + G K D
Sbjct: 30 VILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKH--------------D 73
Query: 783 IHS--------PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTS------- 826
I P + V ++L F +R+ + +R V + +++
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDP---KR--VLDTARDLKIEHLLDRNPL 126
Query: 827 -LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
LSG G +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 127 TLSG---------G----EQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 767
+ + + G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 768 QETFARISGYCEQNDIHSP-------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 820
I+ P LTV E+L+ A+ R + ++ +E
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNR--------KDKEGIKRDLE 120
Query: 821 LV-EL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 871
+ L L G L G G EQ + L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSG--G------EQ-QMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 872 ARAAAIVMRTVRNIVNTGRTI 892
+ V ++ I G TI
Sbjct: 172 PILVSEVFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 2e-04
Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 81/282 (28%)
Query: 1 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 58
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 59 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE-------MTVRETLDFAGQC---- 107
GKI +NG ++ V E +TV E L
Sbjct: 59 Q---KGKIIFNG---QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112
Query: 108 QGVGSKYDMITEL-----ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162
+G+ + I L R +++ G
Sbjct: 113 EGIKRDLEWIFSLFPRLKERLKQLGG---------------------------------- 138
Query: 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 222
TL SGG+++ L G L+ ++L MDE S GL ++ + ++
Sbjct: 139 -----TL---------SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 223 STRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVYQGP 262
+ +GTT+ LL Q A A ++ +L GQIV +G
Sbjct: 185 INQ--EGTTI--LLVEQNALGALKVAHYGYVLETGQIVLEGK 222
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 54/213 (25%)
Query: 684 QPLSMAFGNINYFVDVPV--ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 741
G ++ DV + K++ L V+ + G ALVG SG+GK+T
Sbjct: 333 YEAERVNGEVD-VKDVTFTYQGKEKPALSH-----VSFS--IPQGKTVALVGRSGSGKST 384
Query: 742 LMDVLA----GRKTGGIIEGDIYISGYPKRQETFA---RISGYCEQNDIHSPGLTVLESL 794
+ ++ + G I + G+ R R Q
Sbjct: 385 IANLFTRFYD------VDSGSICLDGHDVRDYKLTNLRRHFALVSQ-----------NVH 427
Query: 795 LFS-------AWLRLPS----EIELETQRAFVEE-VMELVELTSLSG--ALIGLPGINGL 840
LF+ A+ +IE ++A E + + + G +IG G + L
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----GLDTVIGENGTS-L 481
Query: 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 873
S QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 53/210 (25%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 766
Q+L +T PG +TALVG +G+GK+T+ +++ G + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLYQPTGGKVLLDGEPL 83
Query: 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLR------LPSEIELETQRAFVEE 817
Q Q E LLF R L +EE
Sbjct: 84 VQYDHHYLHTQVAAVGQ-----------EPLLFGRSFRENIAYGLTRT-------PTMEE 125
Query: 818 VMELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTS 868
+ + + + G P G G LS QR+ + +A L+ P ++ +D TS
Sbjct: 126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 869 GLDARAAAIVMRTV-RNIVNTGRTIVCTIH 897
LDA V R + + RT++
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 59/261 (22%), Positives = 100/261 (38%), Gaps = 66/261 (25%)
Query: 16 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 75
+ +L L+ + P ++T L+GP SGK+T+ AL L + GK+ +G +
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNL--YQPTGGKVLLDGEPLVQ 85
Query: 76 FVPP--RTS-AYVSQQDWQVAE-----MTVRETLDFAGQCQGVGSKYDMITELARREKIA 127
+ T A V Q E + RE + + G + + IT +A +
Sbjct: 86 YDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY-GLTRTP--TMEEITAVA---MES 133
Query: 128 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKR 185
G F+ F G Y DT VG+ G SGGQ++
Sbjct: 134 GA------HDFISGFPQG---------Y-----------DTEVGE---TGNQLSGGQRQA 164
Query: 186 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAP 240
+ L+ R+L +D ++ LD+ ++ + L S T ++ SL + A
Sbjct: 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA- 223
Query: 241 EAYELFDDVILLSEGQIVYQG 261
++ L EG + QG
Sbjct: 224 ------HHILFLKEGSVCEQG 238
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA----GRKTGGIIEGDIYISGYPKRQETF 771
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD------IDEGHILMDGHDLREYTL 412
Query: 772 A----RISGYCEQNDIHSPGLTVL-ESLLFS---------AWLRLPSEIELET--QRAFV 815
A +++ V LF+ A S ++E + A+
Sbjct: 413 ASLRNQVA-------------LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 816 EE-VMELVELTSLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872
+ + ++ G +IG G+ LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 460 MDFINKMDN-----GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 873 R 873
Sbjct: 514 E 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 837 INGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
+ LS +R L +A L S++ +DEPT LD ++ + +
Sbjct: 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 305
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGG 917
++ H ++ ++ D ++ +
Sbjct: 306 QVILVSHDE--ELKDAADHVIRISLEN 330
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 179 SGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 231
SGGQK+R V AR VL D+ ++ LD +TT I++ LK R L T
Sbjct: 165 SGGQKQR-------VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 232 VI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 286
++ +++ + D V ++S G+++ Q V + F+ PK F
Sbjct: 218 LLITHEMDVVK------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKF 263
Query: 287 LQEVTSKKDQEQYWSN 302
+Q E Y
Sbjct: 264 IQSTLHLDIPEDYQER 279
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 35/199 (17%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 772
L NV+ G + ++G SGAGK+TL+ + R T G ++ ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 773 RIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 825
R G Q N + S TV ++ L L + + V E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-DNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 826 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 881
+LSG Q++R+ IA L +NP ++ D+ TS LD ++
Sbjct: 159 SYPSNLSGG-------------QKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 882 VRNIVN--TGRTIVCTIHQ 898
+++I N G TI+ H+
Sbjct: 206 LKDI-NRRLGLTILLITHE 223
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 41/222 (18%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 772
L++L + R G + ++G SG+GK+T + L + EG+I I G + +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK--- 91
Query: 773 RISGYCEQNDIHS---------------PGLTVLESLLFS-AWLRLPSEIELETQRAFVE 816
+++ P +TVL ++ + +R + E
Sbjct: 92 -------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE------A 138
Query: 817 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
+ MEL++ L P LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 139 KAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 877 IVMRTVRNIVNTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 916
V+ ++ + N G T+V H+ F E D +LFM G
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMG---FAREVGDRVLFMDGG 235
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 56/172 (32%), Positives = 76/172 (44%), Gaps = 52/172 (30%)
Query: 731 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 785
VG SG GK+TL+ ++AG +T I GD++I R+ ND
Sbjct: 34 FVGPSGCGKSTLLRMIAGLET--ITSGDLFIGE--------KRM------NDTPPAERGV 77
Query: 786 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 831
P L+V E++ F L+L I QR V +V E+++L L L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVIN---QR--VNQVAEVLQLAHL---L 127
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 881
P LS QR+R+ I LVA PS+ +DEP S LDA R MR
Sbjct: 128 DRKPK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 39/227 (17%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETF 771
++L V+ R G + +++G SG+GK+T + + + EG I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 772 ARISGYCEQNDIHS---------------PGLTVLESLLFSAWLRLPSEIELETQRAFVE 816
++N + +TVLE+++ + P ++ ++ E
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARE 131
Query: 817 EVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 875
++ + + A P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 876 AIVMRTVRNIVNTGRTIVCTIHQPSIDIFE-SF-----DELLFMKRG 916
V+R ++ + G+T+V H E F ++F+ +G
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH-------EMGFARHVSSHVIFLHQG 229
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 724 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------------- 763
G + AL+G +GAGK+TL +LAG + G+I + G
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86
Query: 764 -YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 822
YP + PG+T+ L + +L E+ + V++ +EL+
Sbjct: 87 QYP-----------------VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 823 ELTS--LSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 879
+ LS L N G S ++KR I LV P+ +DE SGLD A +
Sbjct: 130 DWDESYLSRYL------NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA----L 179
Query: 880 RTVRNIVNTGRT 891
+ V VN R
Sbjct: 180 KVVARGVNAMRG 191
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 8e-04
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 46/198 (23%)
Query: 715 LLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPKR 767
+L ++T +PG ALVG +G+GKTT++ DV G+ I + G R
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ---------ILVDGIDIR 420
Query: 768 QETFARISGYCEQNDIHSPGLTVL-ESLLFSAWLRLPSE-IELETQRAFVEEVMELVELT 825
+ ++ + S VL +++LFS ++ E ++ A EE+ E +LT
Sbjct: 421 KIK---------RSSLRSSIGIVLQDTILFSTTVK---ENLKYGNPGATDEEIKEAAKLT 468
Query: 826 SLSGALIGLPG-----IN----GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876
+ LP + LS QR+ L I +ANP I+ +DE TS +D +
Sbjct: 469 HSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEK 528
Query: 877 IV---MRTVRNIVNTGRT 891
+ M + G+T
Sbjct: 529 SIQAAMWKLM----EGKT 542
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1065 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-20 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-17 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-17 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-18 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-15 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.003 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 6e-05 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 8e-05 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 2e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 7e-04 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.001 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 0.002 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.002 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.004 | |
| d1pzna2 | 254 | c.37.1.11 (A:96-349) DNA repair protein Rad51, cat | 0.004 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (275), Expect = 2e-27
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 13/221 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
+ L V+ + G +T ++G +G+GK+TL++V+ G + G + + + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------LETQRAFVEEVMELVE 823
+ Q +TVLE+LL S + + + VE+ +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 824 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 883
LS G LS Q K + I L+ NP ++ MDEP +G+ A + V
Sbjct: 137 FLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 884 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ G T + H+ + D L M G++I G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.4 bits (224), Expect = 1e-20
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
+ LD +S + +TL++GP SGK+TL+ + G L G++ +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 78 PP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 133
P Q + EMTV E L C G + + ++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 134 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 193
I++ L L D G+ +SGGQ K + G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 194 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 253
+++ MDE G+ + I ++ G T + + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 254 EGQIVYQGP 262
GQI+ +G
Sbjct: 225 NGQIIAEGR 233
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 3e-27
Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIY 760
K + E+ + L NV + G +++G SG+GK+T+++++ + T G + +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 761 ISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
+ + T R G+ Q P LT LE++ + + E +R E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
+++ EL P N LS Q++R+ IA L NP I+ D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 879 MRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
M+ ++ + G+T+V H I++ + ++++K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 81.0 bits (200), Expect = 1e-17
Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 49/261 (18%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 69
+ Y+ + L +++ I+ ++GP SGK+T+L + G++ +
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYID 65
Query: 70 GH-----GFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 122
E R +V QQ + +T E ++ + G+ ++ R
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEER 121
Query: 123 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGG 181
R++ +K+ L + A+ +SGG
Sbjct: 122 RKR---------------------------ALECLKMAELEERFANHKPNQ-----LSGG 149
Query: 182 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241
Q++R+ L ++ D+ + LDS T +I++ LK G TV+ ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVV-VVTHDIN 207
Query: 242 AYELFDDVILLSEGQIVYQGP 262
+ +I L +G++ +
Sbjct: 208 VARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 107 bits (268), Expect = 1e-26
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 12/214 (5%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 770
+ + + G + L+G +GAGKTT + +AG R G I +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
+ P LTV E+L+ A+ R E +R L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQ 135
Query: 831 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 890
L G LS +++ L I L++ P ++ MDEP+ GL + V ++ I G
Sbjct: 136 LGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
TI+ + ++ G+++ G
Sbjct: 191 TILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.3 bits (203), Expect = 5e-18
Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 47/271 (17%)
Query: 1 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-G 57
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 58 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 117
++ + + A V + E+TV E L +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----- 113
Query: 118 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 177
+ + L L G
Sbjct: 114 ---GIKRDLE--------------------------WIFSLFPRLKERLKQLGGT----- 139
Query: 178 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 237
+SGG+++ L G L+ ++L MDE S GL ++ + ++ + +GTT++ + Q
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQ 197
Query: 238 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268
A A ++ +L GQIV +G +LD
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (267), Expect = 2e-26
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETF 771
+ + + G L+G SG GKTT + ++AG + EG IY
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
R Q+ P +TV E++ F ++ + + V EL+++ L
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGR 890
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 134 PA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
T + H + D + M R G+L+ G
Sbjct: 189 TTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 97.5 bits (243), Expect = 3e-23
Identities = 63/288 (21%), Positives = 103/288 (35%), Gaps = 55/288 (19%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M E L L GN T ++ L+ I+ +LLGP GKTT L +AG
Sbjct: 4 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT- 59
Query: 61 QVSGKITYNGHGFKEFVPP-RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 119
G+I + P R + V Q MTV E + F + + E
Sbjct: 60 --EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD-----E 112
Query: 120 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 179
+ +R V + ++L ++ + +S
Sbjct: 113 IDKR-----------------------------VRWAAELLQIEELLNRYPAQ-----LS 138
Query: 180 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239
GGQ++R+ +V VL MDE + LD+ + +K + L TT+
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
Query: 240 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
EA + D + +++ GQ++ G V + P VA F+
Sbjct: 199 -EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (260), Expect = 3e-25
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 775
L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 776 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 835
+C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 836 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 895
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 896 IHQPSIDIFESFDELLFMKRG 916
+ D++L + +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.4 bits (206), Expect = 5e-18
Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 52/242 (21%)
Query: 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 80
+L +++ I + + G SGKT+LL+ + G L G I ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 140
++ SQ W + T++E + F K ++ D
Sbjct: 99 -VSFCSQFSW-IMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQQD-------- 140
Query: 141 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 200
I +T++G+ +SGGQ+ R++ + A +
Sbjct: 141 ------------------ITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYL 181
Query: 201 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 260
+D LD T Q+ + + + T I L+ E D +++L +G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 261 GP 262
G
Sbjct: 239 GT 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (252), Expect = 2e-24
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 768
+ ++L ++ G + L+G +GAGKTT + +++ + + GI+ +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 72
Query: 769 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 828
++ Y + + +E L F A S E+ VE E+ L
Sbjct: 73 --VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKI 127
Query: 829 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
+ S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 889 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
G TI+ + H ++ D + + G ++ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 84.3 bits (208), Expect = 1e-18
Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 57/288 (19%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
++ LR G + IL +S I + L+GP +GKTT L ++ + SG
Sbjct: 5 VKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGI 58
Query: 66 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 123
+T G E + +Y+ ++ M E L F S
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-------EIE 111
Query: 124 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 183
E VE +I GL V S G
Sbjct: 112 EM---------------------------VERATEIAGLGEKIKDRVS-----TYSKGMV 139
Query: 184 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243
++L L+ R+ +DE ++GLD ++ K LK +++ +G T++ E
Sbjct: 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVE 197
Query: 244 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 291
L D + L+ G IV G + K +N+ + +EV
Sbjct: 198 FLCDRIALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (252), Expect = 3e-24
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 22/226 (9%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQE 769
++L V+ R G + +++G SG+GK+T + + + + G II I+ +
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 770 TFARIS-----------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 818
Q+ +TVLE+++ + R +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 819 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 878
+ V + A P LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDER--AQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 879 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+R ++ + G+T+V H+ ++F+ G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 78.3 bits (193), Expect = 2e-16
Identities = 52/299 (17%), Positives = 94/299 (31%), Gaps = 69/299 (23%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L G +L +S R + ++G SGK+T L + G
Sbjct: 5 VIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGA 58
Query: 66 ITYNGHGFKEFVPP----------------RTSAYVSQQDWQVAEMTVRETLDFAGQCQG 109
I NG V Q + MTV E + A
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA----- 113
Query: 110 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 169
++ G+ + + + +G+D A
Sbjct: 114 -------------PIQVLGLSKHDARER---------------ALKYLAKVGIDERAQGK 145
Query: 170 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 229
+ SGGQ++R++ L VL DE ++ LD ++++ ++ +G
Sbjct: 146 YPVHL----SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EG 199
Query: 230 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 288
T++ + A + VI L +G+I +G V F P+ + FL+
Sbjct: 200 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (250), Expect = 4e-24
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 15/208 (7%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 770
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ +
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLAS 86
Query: 771 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 830
QN +IE + A + M+ + +
Sbjct: 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE---EAARMAYAMDFIN--KMDNG 141
Query: 831 LIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 888
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200
Query: 889 GRTIVCTIHQPSIDIFESFDELLFMKRG 916
RT + H+ S E DE++ ++ G
Sbjct: 201 NRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 79.9 bits (197), Expect = 5e-17
Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 42/253 (16%)
Query: 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 76
++ L +++ I + L+G SGK+T+ + G I +GH +E+
Sbjct: 26 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREY 82
Query: 77 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 134
R + Q+ + TV + +A ++ ++ ++A
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYAR------TEEYSREQIEEAARMAYAMDF-- 134
Query: 135 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 194
I +D DT++G E +SGGQ++R+ L+
Sbjct: 135 ------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLR 169
Query: 195 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 254
+ +L +DE ++ LD+ + I L T + ++ E D+++++ +
Sbjct: 170 DSPILILDEATSALDTESERAIQAALD---ELQKNRTSL-VIAHRLSTIEQADEIVVVED 225
Query: 255 GQIVYQGPRVSVL 267
G IV +G +L
Sbjct: 226 GIIVERGTHSELL 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 19/228 (8%)
Query: 704 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 763
K +Q L NV+ G + ++G SGAGK+TL+ + + EG + + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 764 Y------PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 817
R G Q+ TV ++ L + E+ + V E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV---KRRVTE 123
Query: 818 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 877
++ LV L + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 878 VMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
++ +++I G TI+ H+ + + D + + GELI
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 89.9 bits (223), Expect = 1e-20
Identities = 51/283 (18%), Positives = 101/283 (35%), Gaps = 57/283 (20%)
Query: 10 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 69
+++ + L+++S + ++ ++G +GK+TL+ + G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL---LERPTEGSVLVD 65
Query: 70 GH-----GFKEFVPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARR 123
G E R + Q + ++ TV + + +
Sbjct: 66 GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVK 118
Query: 124 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 183
+ V ++ ++GL D+ + +SGGQK
Sbjct: 119 RR---------------------------VTELLSLVGLGDKHDSYPSN-----LSGGQK 146
Query: 184 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243
+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVK 205
Query: 244 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 286
+ D V ++S G+++ Q V FS PK F
Sbjct: 206 RICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 96.9 bits (241), Expect = 2e-23
Identities = 38/189 (20%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 773
+L +T G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 833
+ + I ++V + L A L ++ + + + +E VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 834 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTI 892
+ LS +R+ +A L+ N I +D+P +D + V++++ I+ G I
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 893 VCTIHQPSI 901
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 70.7 bits (173), Expect = 2e-14
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 79
+L+ ++ I + GP GKTTLL ++ L G+I YNG +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 139
++ ++ +++V + L GV + I + ++ +K
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK--------- 120
Query: 140 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 199
+ L +S G +R+ L+ A +
Sbjct: 121 ---------------------------------KKLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 200 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234
+D+ +D + ++++K + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIIS 181
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 97.9 bits (244), Expect = 3e-23
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 11/217 (5%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 769
++ +L ++ + G A VG+SG GK+TL++++ + G I I G+ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDF 85
Query: 770 TFARISGYCE--QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
+ Q D TV E++L E+ + A + + L
Sbjct: 86 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLPQG 143
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887
+G G+ LS Q++RL+IA + NP I+ +DE TS LD + +I+ + + +
Sbjct: 144 YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-S 201
Query: 888 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
RT + H+ S D+++ ++ G ++ G
Sbjct: 202 KDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 84.5 bits (209), Expect = 1e-18
Identities = 56/267 (20%), Positives = 98/267 (36%), Gaps = 48/267 (17%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
Y N + IL D++ I +G GK+TL+ + SG+I +GH
Sbjct: 26 YNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGH 80
Query: 72 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
K+F+ R + QQD + TV+E + G E+ K+A
Sbjct: 81 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANA 133
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
I+ L DT VG E +SGGQK+RL+
Sbjct: 134 HDF--------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIA 166
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
+ + +L +DE ++ LD + I + L ++ T + ++ D +
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTL-IVAHRLSTITHADKI 222
Query: 250 ILLSEGQIVYQGPRVSVLD---FFASM 273
+++ G IV G ++ + +
Sbjct: 223 VVIENGHIVETGTHRELIAKQGAYEHL 249
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (239), Expect = 9e-23
Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQETFA 772
L ++G R G + LVG +GAGK+TL+ +AG +G +G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
Y Q V L + T+ + +V + L G
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 833 GLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMDEPTSGLDARAAAIVMRTVRNI 885
LS + +R+ +A ++ ++ +DEP + LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 886 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
G IV + H + +K GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 74.2 bits (182), Expect = 2e-15
Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 60/264 (22%)
Query: 15 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 74
+ ++ T L LSG +R + L+GP +GK+TLL +AG G I + G +
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLE 63
Query: 75 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 131
+ + + AY+SQQ V L R ++
Sbjct: 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-------------HDKTRTEL----- 105
Query: 132 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 191
+ + L LD +SGG+ +R+ +
Sbjct: 106 ---------------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAV 139
Query: 192 LVGPA-------RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244
++ ++L +DE N LD + + K L + G ++
Sbjct: 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLR 197
Query: 245 LFDDVILLSEGQIVYQGPRVSVLD 268
LL G+++ G R VL
Sbjct: 198 HAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---K 766
D +L N+ + + G + +VG SG+GK+TL ++ G + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALA 70
Query: 767 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
R G Q D ++++++ + ++ + A + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA---GAHDFISELR 126
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
I GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + I
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI- 185
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 916
GRT++ H+ S ++ D ++ M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 73.0 bits (179), Expect = 8e-15
Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 45/259 (17%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
Y+ + ILD+++ I+ + ++G SGK+TL + +G++ +GH
Sbjct: 11 YKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGH 65
Query: 72 GFKEFVPPRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
P V QD + ++ + + A V K +LA
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISE 124
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
+ I + A G+SGGQ++R+
Sbjct: 125 LREGYNTIVGEQGA---------------------------------GLSGGQRQRIAIA 151
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
LV ++L DE ++ LD + + I++ + + G TVI + + D +
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMH---KICKGRTVIIIAH-RLSTVKNADRI 207
Query: 250 ILLSEGQIVYQGPRVSVLD 268
I++ +G+IV QG +L
Sbjct: 208 IVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.7 bits (230), Expect = 2e-21
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 12/213 (5%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 772
L +T RPG +TALVG +G+GK+T+ +L G + + G P Q
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 773 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
R Q ++ E++ + + P+ E+ + L +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEV 145
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 891
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 892 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
++ S + E D +LF++ GG + G
Sbjct: 205 VLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (210), Expect = 8e-19
Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 45/266 (16%)
Query: 14 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 73
NR + +L L+ +RP +T L+GP SGK+T+ L G++ +G
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL 78
Query: 74 KEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 130
++ R A V Q + QV +++E + + +T+ E+I
Sbjct: 79 PQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYG------------LTQKPTMEEITAAA 125
Query: 131 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 190
F+ G DT V E +SGGQ++ +
Sbjct: 126 VKSGAHSFISGLPQGY--------------------DTEVD-EAGSQLSGGQRQAVALAR 164
Query: 191 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250
L+ VL +D+ ++ LD+++ Q+ + L S + ++ E D ++
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHIL 222
Query: 251 LLSEGQIVYQGPRVSVLD---FFASM 273
L G I G +++ + +M
Sbjct: 223 FLEGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 772
+ + ++ G VG SG GK+TL+ ++AG +T I GD++I A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70
Query: 773 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
G Q+ P L+V E++ F L + E V +V E+++L L
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLDRK 127
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 890
LS QR+R+ I LVA PS+ +DEP S LDA + + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
T++ H D+++ + G + G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 3e-17
Identities = 51/271 (18%), Positives = 94/271 (34%), Gaps = 52/271 (19%)
Query: 18 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 77
++ + D++ I + +GP GK+TLL +AG SG + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 78 PPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 136
P V Q ++V E + F + G + ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQR----------- 110
Query: 137 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 196
V + ++L L D +SGGQ++R+ G LV
Sbjct: 111 ----------------VNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 197 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256
V +DE + LD++ ++ G T+I + EA L D +++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 257 IVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+ G + + + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 88.4 bits (219), Expect = 4e-20
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 768
+D Q+L +++ +P + A G SG GK+T+ +L G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNI 69
Query: 769 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 826
E + G+ Q+ G ++ AF +E +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-- 127
Query: 827 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 886
+G G+ +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + ++
Sbjct: 128 QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL- 185
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
GRT + H+ S D++ F+++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 77.2 bits (190), Expect = 3e-16
Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 45/253 (17%)
Query: 12 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 71
Y + IL D+S +P+ + GP GK+T+ L +G+IT +G
Sbjct: 11 YDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQ 64
Query: 72 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 129
R+ QD + T+RE L + + + +LA
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 130 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 189
PD+ +T VG E ISGGQ++RL
Sbjct: 125 MPDQL--------------------------------NTEVG-ERGVKISGGQRQRLAIA 151
Query: 190 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249
+ ++L +DE + LDS + + K L + G T + + D +
Sbjct: 152 RAFLRNPKILMLDEATASLDSESESMVQKALD---SLMKGRTTLVIAH-RLSTIVDADKI 207
Query: 250 ILLSEGQIVYQGP 262
+ +GQI G
Sbjct: 208 YFIEKGQITGSGK 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.5 bits (211), Expect = 5e-19
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 768
++ L NV G ++G SGAGKTT M ++AG TG + D ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 769 -ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 827
R G Q P LT E++ F S+ E R VEEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK---EEIRKRVEEVAKILDIHHV 133
Query: 828 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 886
LS Q++R+ +A LV +PS++ +DEP S LDAR V+ +
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 887 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
G T++ H P+ DIF D + + G+L+ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 73.2 bits (179), Expect = 8e-15
Identities = 54/294 (18%), Positives = 110/294 (37%), Gaps = 60/294 (20%)
Query: 1 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 59
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 60 LQVSGKITYNGHGF----KEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 113
+G++ ++ K VPP R V Q +T E + F
Sbjct: 59 ---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLT 108
Query: 114 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 173
+++ R++ VE + KIL + +
Sbjct: 109 NMKMSKEEIRKR---------------------------VEEVAKILDIHHVLNH----- 136
Query: 174 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233
+ +SG Q++R+ LV +L +DE + LD+ + L ++ G T++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA-RMRDSARALVKEVQSRLGVTLL 195
Query: 234 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+ + + + D V +L +G++V G + + P VA +
Sbjct: 196 VVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 85.0 bits (210), Expect = 6e-19
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFARI 774
++ + G L+G SG GKTT + ++AG + G I GD ++ K +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 775 SG--YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 832
Q+ P +TV +++ F LR E+ V EV EL+ LT L
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI---DQRVREVAELLGLTELLNRKP 137
Query: 833 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRT 891
LS QR+R+ + +V P + MDEP S LDA+ + ++ + G T
Sbjct: 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 892 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
+ H + D + M R G L G
Sbjct: 193 TIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.7 bits (191), Expect = 2e-16
Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 47/287 (16%)
Query: 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 60
M L + G +T + ++S ++ +LLGP GKTT L +AG
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS- 56
Query: 61 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 120
G+I V+ + + + Q + + +
Sbjct: 57 --RGQIYIGDK------------LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102
Query: 121 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 180
A K+ + E V + ++LGL + + +SG
Sbjct: 103 AFPLKLRKVPRQEIDQR---------------VREVAELLGLTELLNRKPRE-----LSG 142
Query: 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240
GQ++R+ G +V +V MDE + LD + ++ + G T I +
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 241 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
EA + D + +++ G + G V + P VA F+
Sbjct: 202 EAMTMGDRIAVMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.9 bits (186), Expect = 7e-16
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG----RKTGGIIEGDIYISGYPKRQETF 771
L N++ G ++G +GAGKT ++++AG +++G P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 772 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 831
+ QN P + V ++L F ++ + + V++ + L
Sbjct: 72 -HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---------RVLDTARDLKIEHLL 121
Query: 832 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 890
P LS +++R+ +A LV NP I+ +DEP S LD R + +
Sbjct: 122 DRNP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 891 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 924
T++ H + + D + + G+LI G
Sbjct: 180 TVLHITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.6 bits (175), Expect = 2e-14
Identities = 54/283 (19%), Positives = 102/283 (36%), Gaps = 59/283 (20%)
Query: 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
+ L N LD+LS + ++LGP +GKT L +AG SG+
Sbjct: 4 IESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGR 56
Query: 66 ITYNGHGFKEFVPPR-TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 124
I +G + P + A+V Q M V++ L+F + + + +
Sbjct: 57 ILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPK 106
Query: 125 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 184
+ V + L ++ D +SGG+++
Sbjct: 107 R---------------------------VLDTARDLKIEHLLD-----RNPLTLSGGEQQ 134
Query: 185 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244
R+ LV ++L +DE + LD T + + + + TV+ + EA
Sbjct: 135 RVALARALVTNPKILLLDEPLSALDP-RTQENAREMLSVLHKKNKLTVLHITHDQTEARI 193
Query: 245 LFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 287
+ D + ++ +G+++ G + F P VA F+
Sbjct: 194 MADRIAVVMDGKLIQVGKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 1e-14
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 725 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQN 781
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 782 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841
P L+V ++ + E + V E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLS 128
Query: 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 900
+R+R+ +A LV P ++ +DEP S +D + ++M +R + I+ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 901 IDIFESFDELLFMKRGGELIYAGP 924
+ DE+ M G ++ G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.4 bits (146), Expect = 2e-10
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 55/252 (21%)
Query: 37 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS-AYVSQQDWQVAEM 95
LLGP +GK+ L +AG + G++ NG P R +V Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 96 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 155
+V + + + + + E+A + IA +
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------------------- 120
Query: 156 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 215
D +SGG+++R+ LV R+L +DE + +D T
Sbjct: 121 ----------------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 216 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGF 275
+++ + ++ + EA L D+V ++ G+IV +G +
Sbjct: 165 LME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 276 SCPKRKNVADFL 287
K VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.8 bits (115), Expect = 4e-07
Identities = 17/187 (9%), Positives = 38/187 (20%), Gaps = 35/187 (18%)
Query: 730 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 789
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 849
+ + S + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 850 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 909
++ +DE + + + + +V TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 910 LLFMKRG 916
+ +
Sbjct: 149 IRRLPGA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 37.7 bits (86), Expect = 0.003
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 36 LLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVA 93
++ G P GKTTL+ + RLG + E + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 94 EMTVRE 99
Sbjct: 61 SKFFTS 66
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 6e-05
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 3/124 (2%)
Query: 22 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLL--ALAGRLGHHLQVSGKITYNGHGFKEFVP 78
LD L G I +T + G +GKT + A+ +L F P
Sbjct: 12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 71
Query: 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 138
R A + +++ A + + + A + D ++
Sbjct: 72 ERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 131
Query: 139 MKSF 142
+
Sbjct: 132 RTDY 135
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 43.5 bits (101), Expect = 8e-05
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 81
++D + R + ++ GK+T + A + G + + E
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL-AMLEESVEETAEDL 83
Query: 82 SAYVSQQDWQVAEMTVRETLDFA 104
++ + ++ RE ++
Sbjct: 84 IGLHNRVRLRQSDSLKREIIENG 106
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 22 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
LD L G + +T L G +GK+ L LA L + G
Sbjct: 23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 7e-04
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56
LD + + + L+ P +GK+ L L LA ++
Sbjct: 19 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 39.7 bits (91), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 22 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 53
LD L G + +T G SGKT ++
Sbjct: 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.9 bits (89), Expect = 0.001
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 32 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQ 88
+L ++ GP GK+T LA +L + + G I G + A +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 89 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 125
+ + D + + + + + +
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKV 98
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.001
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 850
+E +A L + E E L + G + L+ L
Sbjct: 294 VELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLF 347
Query: 851 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 910
A+ +DE + LD + +R N + + +FE D L
Sbjct: 348 AINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDAL 405
Query: 911 L---FMKRGG 917
+ ++
Sbjct: 406 VGVYRQQQEN 415
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 22 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 53
DD G + R TL+ G +GKT +
Sbjct: 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 39.1 bits (90), Expect = 0.002
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 22 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 59
LD+ G + L G +GKT L+ +
Sbjct: 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 53
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 37.3 bits (85), Expect = 0.004
Identities = 9/63 (14%), Positives = 18/63 (28%)
Query: 32 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQ 91
+R+ +L G S+GK+ ++ L L G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 92 VAE 94
Sbjct: 63 SIG 65
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 37.8 bits (86), Expect = 0.004
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 22 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 65
LD L G I +T + G SGKT L LA + + G
Sbjct: 25 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL 69
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.2 bits (85), Expect = 0.004
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 59
DL G + LL G P SGK+T+ ALA G
Sbjct: 1 DLGG-----NILLLSGHPGSGKSTIAEALANLPGVP 31
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1065 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.33 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.85 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.84 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.82 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.73 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.5 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.44 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.87 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.78 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.76 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.56 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.4 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.11 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.05 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.05 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.93 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.91 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.87 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.8 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.78 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.71 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.66 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.66 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.61 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.59 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.43 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.4 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.4 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.39 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.26 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.21 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.17 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.17 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.16 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.13 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.12 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.1 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.06 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.01 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.01 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.98 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.9 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.88 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.88 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.86 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.83 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.82 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.79 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.78 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.74 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.73 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.73 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.72 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.65 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.64 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.63 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.57 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.56 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.55 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.52 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.51 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.51 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.51 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.5 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.47 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.47 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.47 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.46 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.43 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.43 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.4 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.38 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.37 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.36 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.36 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.35 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.33 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.32 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.29 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.28 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.28 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.27 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.27 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.26 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.2 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.2 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.19 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.17 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.16 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.16 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.14 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.14 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.12 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.11 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.08 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.04 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.02 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.01 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.0 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.99 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.93 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.92 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.89 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.89 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.88 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.88 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.87 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.87 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.84 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.8 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.75 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.74 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.71 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.71 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.61 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.58 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.56 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.56 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.54 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.51 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.49 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.47 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.47 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.45 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.39 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.39 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.38 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.38 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.37 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.37 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.31 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.3 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.28 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.25 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.22 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.21 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.2 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.19 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.17 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.13 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.13 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.11 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.09 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.05 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.05 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.02 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.0 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.0 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.99 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.95 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.94 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.94 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.92 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.9 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.87 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.85 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.83 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.83 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.81 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.79 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.79 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.78 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.75 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.74 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.73 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.65 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.63 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.62 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.58 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.56 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.52 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.48 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.47 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.44 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.39 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.37 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.36 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.35 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.3 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.26 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.25 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.24 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.22 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.19 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.14 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.12 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.11 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.1 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.08 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.07 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.06 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.04 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.03 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.02 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.02 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.94 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.93 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.91 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.89 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.87 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.82 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.8 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.78 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.75 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.73 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.69 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.68 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.65 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.64 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.64 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.61 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.6 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.6 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.56 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.56 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.52 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.39 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.38 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.38 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.36 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.35 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.32 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.25 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.22 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.21 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.18 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.09 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.08 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.06 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.04 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.03 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.0 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.98 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.97 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.88 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.86 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.85 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.83 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.83 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.82 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.8 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.74 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.73 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.7 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.7 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.64 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.62 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.58 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.52 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.52 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.47 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.45 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.45 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 91.42 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.41 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.41 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.4 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.4 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.38 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.36 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.35 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.34 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.34 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.29 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.25 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.24 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.23 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.23 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.22 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.19 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.18 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.11 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.07 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.01 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.95 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.95 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.93 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.92 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.89 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.74 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.69 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.68 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.59 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.56 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.51 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.5 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.47 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.43 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.39 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.39 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.38 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.38 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.29 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.27 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.26 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.22 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.2 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.19 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.19 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.13 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.02 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.97 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.89 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.89 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.88 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 89.86 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.84 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.82 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.73 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.72 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.72 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.67 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.66 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.65 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.65 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.61 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.61 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.58 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.57 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.53 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.36 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.33 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.31 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.29 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.28 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.24 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.2 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.17 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.14 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.06 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.98 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.93 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.9 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.83 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.8 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.59 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.5 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.43 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.41 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.25 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 88.14 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.08 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.06 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 87.92 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.76 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.71 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.68 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.52 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.5 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.39 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.28 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.18 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.11 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.89 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.69 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.68 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.53 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.51 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.37 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.31 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.26 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 86.24 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.96 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.62 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.54 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.16 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.89 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.78 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.45 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.16 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.88 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.79 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.62 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 83.5 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.08 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.96 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 82.5 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.45 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.66 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.77 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.51 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.37 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.22 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=330.94 Aligned_cols=204 Identities=26% Similarity=0.354 Sum_probs=181.8
Q ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-------CCCCEEEEECCCCC
Q ss_conf 55268631146874886999995999728999999978999971689999979318900-------12353889737998
Q 001507 711 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDI 783 (1065)
Q Consensus 711 ~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~~~v~q~~~ 783 (1065)
++..+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.++... ..++.+|||+|++.
T Consensus 14 g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (240)
T d1g2912 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHH
T ss_conf 99999856066886998999999999809999999964878--8989899999980356644424532255120022122
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99999899999998660399998799999999999999089763367324898887799999999999999729981223
Q 001507 784 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 784 ~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~l 863 (1065)
+++.+||+|++.|...++. .+.++.+++++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|
T Consensus 92 L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iLll 163 (240)
T d1g2912 92 LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLM 163 (240)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred HCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 2310116676330687729---998999999999998759966762993-----34999999999999998269988982
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 1899999999999999999999848-96899992588588997439199993496999917999
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 864 DEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||||+|||+.++..+++.++++.++ |.|||+++|+++ ++...+|++++|. +|+++..|++.
T Consensus 164 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~iv~~G~~~ 225 (240)
T d1g2912 164 DEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVLQQVGSPD 225 (240)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 58876569899989999999998636988999959999-9999699999998-99999985999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=334.70 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=179.6
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCC
Q ss_conf 45526863114687488699999599972899999997899997168999997931890-01235388973799899999
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++..+|++||+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+
T Consensus 16 yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 93 (239)
T d1v43a3 16 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93 (239)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CC
T ss_pred ECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCC
T ss_conf 999999813067887998999999999829999999975899--987879991641354770001589980033534222
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 89999999866039999879999999999999908976336732489888779999999999999972998122318999
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEpts 868 (1065)
||+|++.|.+.++ ..+.++.+++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts 165 (239)
T d1v43a3 94 TVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 165 (239)
T ss_dssp CHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 0999999999873---9999999999999998759855660995-----4699999889999766404998243068866
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 99999999999999999848-96899992588588997439199993496999917999
Q 001507 869 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 869 glD~~~~~~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||+.++..+++.++++.++ |.|||+++|++. ++...+|++++|. .|+++..|++.
T Consensus 166 ~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~~ 222 (239)
T d1v43a3 166 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGSPT 222 (239)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 689899989999999998731980799948999-9998699999998-99999985999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=335.14 Aligned_cols=205 Identities=27% Similarity=0.381 Sum_probs=175.5
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCC
Q ss_conf 45526863114687488699999599972899999997899997168999997931890-01235388973799899999
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 788 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~l 788 (1065)
+++..+|+|+|+.+++||++||+||||||||||+++++|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+
T Consensus 10 yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~ 87 (232)
T d2awna2 10 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87 (232)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC----
T ss_pred ECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCH
T ss_conf 899999811177886998999998999829999999965878--888889999997788864443222343342026433
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 89999999866039999879999999999999908976336732489888779999999999999972998122318999
Q 001507 789 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 868 (1065)
Q Consensus 789 tv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEpts 868 (1065)
||+|++.|...++. .+.++.+++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+
T Consensus 88 tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~illlDEPts 159 (232)
T d2awna2 88 SVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 159 (232)
T ss_dssp --------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTT
T ss_pred HHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 37889789998759---988999999999997578865664896-----5699999999999999703998899758887
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999999984-896899992588588997439199993496999917999
Q 001507 869 GLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 869 glD~~~~~~i~~~l~~~~~-~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
|||+.++..+++.++++.+ .|.|||+++|++. ++...+|++++|. +|+++..|++.
T Consensus 160 ~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~~ 216 (232)
T d2awna2 160 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKPL 216 (232)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECHH
T ss_conf 889889989999999998742987999948999-9999699999997-99999980899
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=340.11 Aligned_cols=222 Identities=25% Similarity=0.326 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-CC
Q ss_conf 93789888415047753210133733788386699994699999689998994696999714589998893588888-98
Q 001507 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PP 79 (1065)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~-~~ 79 (1065)
|.++.++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.... .+
T Consensus 4 M~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~ 77 (239)
T d1v43a3 4 MVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 77 (239)
T ss_dssp CCCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred CCEEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCC
T ss_conf 07499987999999---999981306788799899999999982999999997589998---787999164135477000
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 41788754345688899899999985414988861243798899886189999125789865311688502689999999
Q 001507 80 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 159 (1065)
Q Consensus 80 ~~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~ 159 (1065)
+.++||+|++-+++++||+||+.|+..+++... .+.+..++++++.
T Consensus 78 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~ 123 (239)
T d1v43a3 78 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK----------------------------------DEIDKRVRWAAEL 123 (239)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCH----------------------------------HHHHHHHHHHHHH
T ss_pred CEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHH
T ss_conf 158998003353422209999999998739999----------------------------------9999999999987
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 19854344433686554476001346799999846980878737987879598999999999987607988999953796
Q 001507 160 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 239 (1065)
Q Consensus 160 lgL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~ 239 (1065)
++|++.+|..+ ..||||||||++||||++.+|+|++|||||+|||+.++..+++.++++.+..+.| ++.++|..
T Consensus 124 ~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-ii~vTHd~ 197 (239)
T d1v43a3 124 LQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQ 197 (239)
T ss_dssp TTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCH
T ss_pred CCCHHHHCCCH-----HHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCH
T ss_conf 59855660995-----4699999889999766404998243068866689899989999999998731980-79994899
Q ss_pred HHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 47994114089952890778858000899
Q 001507 240 PEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 240 ~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
.++..++|+|++|++|++++.|++.++..
T Consensus 198 ~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 198 VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998699999998999999859999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=329.16 Aligned_cols=216 Identities=28% Similarity=0.403 Sum_probs=186.0
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 89931167774041001246334552686311468748869999959997289999999789999716899999793189
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~ 767 (1065)
+..+|+++..+ .++..+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 4 IIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVA 70 (242)
T ss_dssp EEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEEE
T ss_conf 99975799988-----------999899804078987998999998999809999999975868--88745999999951
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0123538897379989999989999999866039999879999999999999908976336732489888779
Q 001507 768 Q------ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 841 (1065)
Q Consensus 768 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS 841 (1065)
. ..+++.+|||+|+..+++.+||+|++.|....+ ..+.++.+++++++++.+++.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LS 142 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELS 142 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred CCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHCC
T ss_conf 3731115312045147730433466665777766556761---3799999999999986659176664895-----4599
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 99999999999997299812231899999999999999999999848-96899992588588997439199993496999
Q 001507 842 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920 (1065)
Q Consensus 842 ~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 920 (1065)
||||||++|||||+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++...+|++++|. .|+++
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~-~G~iv 220 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKLV 220 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEE
T ss_conf 999858998757760466145447866799899889989999998635987999979999-9999699999998-99999
Q ss_pred EECCCC
Q ss_conf 917999
Q 001507 921 YAGPLG 926 (1065)
Q Consensus 921 ~~g~~~ 926 (1065)
..|++.
T Consensus 221 ~~g~~~ 226 (242)
T d1oxxk2 221 QVGKPE 226 (242)
T ss_dssp EEECHH
T ss_pred EECCHH
T ss_conf 986999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=323.53 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=177.6
Q ss_pred CEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC---C----CCCEEEEECCCCCC
Q ss_conf 5268631146874886999995999728999999978999971689999979318900---1----23538897379989
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIH 784 (1065)
Q Consensus 712 ~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~~~v~q~~~~ 784 (1065)
...+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.++... . +++.+|||+|++.+
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l 94 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred EEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHH
T ss_conf 0898713377884997999988999982165575068877--77662699999857688555123125557788041241
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999989999999866039999879999999999999908976-3367324898887799999999999999729981223
Q 001507 785 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 863 (1065)
Q Consensus 785 ~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~l 863 (1065)
++.+||+|++.+....+.....+..+..+++.++++.+++.+ ..+..+ ..||||||||++|||||+.+|++|+|
T Consensus 95 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLll 169 (230)
T d1l2ta_ 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILA 169 (230)
T ss_dssp CTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7686688877578887224789999999999998876242345534880-----23899999999987565227888994
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 1899999999999999999999848-9689999258858899743919999349699991799
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 864 DEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||++||+.++..+++.|+++.++ |.|||+++|+++ ..+.+|++++|. .|+++..|.+
T Consensus 170 DEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~-~G~Iv~~g~~ 229 (230)
T d1l2ta_ 170 DQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLK-DGEVEREEKL 229 (230)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEE-TTEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCC
T ss_conf 68765469899999999999999843999999878889--998699899998-9999995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=327.82 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=179.3
Q ss_pred CEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---C---CCCCEEEEECCCCCCC
Q ss_conf 526863114687488699999599972899999997899997168999997931890---0---1235388973799899
Q 001507 712 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E---TFARISGYCEQNDIHS 785 (1065)
Q Consensus 712 ~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~~~v~q~~~~~ 785 (1065)
...+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. . .+++.+|||+|+..++
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~ 94 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCC
T ss_pred EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 4898615057886997999989998988899998758863--66773288676852087555115541664302252227
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 99989999999866039999879999999999999908976336732489888779999999999999972998122318
Q 001507 786 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 786 ~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDE 865 (1065)
+.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||
T Consensus 95 ~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDE 166 (240)
T d3dhwc1 95 SSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDE 166 (240)
T ss_dssp TTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99649999999999849---998999999999999769903554894-----3499999989998640105898687446
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCC
Q ss_conf 99999999999999999999848-968999925885889974391999934969999179998
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 927 (1065)
Q Consensus 866 ptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~ 927 (1065)
||+|||+.++..+++.|+++.++ |.|||+++|++. ++...+|++++|. +|++++.|++.+
T Consensus 167 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~iv~~G~~~e 227 (240)
T d3dhwc1 167 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELIEQDTVSE 227 (240)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEEEECCHHH
T ss_conf 556589888567999999998646978999838999-9998699999997-999999879999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=337.04 Aligned_cols=217 Identities=23% Similarity=0.342 Sum_probs=187.5
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-CCCEEEE
Q ss_conf 888415047753210133733788386699994699999689998994696999714589998893588888-9841788
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAY 84 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~-~~~~i~y 84 (1065)
++|+++.++ .+++|+|+|+.+++||+++|+||||||||||+++|+|...|+ +|+|.++|.++.+.. .+|.++|
T Consensus 3 v~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~ 76 (232)
T d2awna2 3 LQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGM 76 (232)
T ss_dssp EEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEE
T ss_pred EEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEE
T ss_conf 999999989---999981117788699899999899982999999996587888---88899999977888644432223
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 75434568889989999998541498886124379889988618999912578986531168850268999999919854
Q 001507 85 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 164 (1065)
Q Consensus 85 v~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~ 164 (1065)
|+|++.+++.+||+||+.|+..+++.. ..+..+.++++++.++|++
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~l~~ 122 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAH 122 (232)
T ss_dssp ECSSCCC-------------------------------------------------------CHHHHHHHHHHHHC----
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCC----------------------------------HHHHHHHHHHHHHHCCCHH
T ss_conf 433420264333788978999875998----------------------------------8999999999997578865
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
Q ss_conf 34443368655447600134679999984698087873798787959899999999998760798899995379647994
Q 001507 165 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 244 (1065)
Q Consensus 165 ~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~ 244 (1065)
..|..+. .||||||||++||||++.+|++++|||||+|||+.++.++++.++++.+..+.| ++.++|...++..
T Consensus 123 ~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~t-ii~vTHd~~~a~~ 196 (232)
T d2awna2 123 LLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT-MIYVTHDQVEAMT 196 (232)
T ss_dssp ----------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE-EEEEESCHHHHHH
T ss_pred HHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHH
T ss_conf 6648965-----699999999999999703998899758887889889989999999998742987-9999489999999
Q ss_pred HCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 114089952890778858000899
Q 001507 245 LFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 245 lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
++|+|++|++|++++.|++.++..
T Consensus 197 ~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 197 LADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCEEEEEECCEEEEEECHHHHHH
T ss_conf 699999997999999808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=336.76 Aligned_cols=222 Identities=26% Similarity=0.330 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---
Q ss_conf 93789888415047753210133733788386699994699999689998994696999714589998893588888---
Q 001507 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--- 77 (1065)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~--- 77 (1065)
|+.+.++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++....
T Consensus 1 M~~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~ 74 (240)
T d1g2912 1 MAGVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (240)
T ss_dssp CEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred CCCEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHH
T ss_conf 98189986999989---999985606688699899999999980999999996487889---898999999803566444
Q ss_pred ----CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHH
Q ss_conf ----9841788754345688899899999985414988861243798899886189999125789865311688502689
Q 001507 78 ----PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 153 (1065)
Q Consensus 78 ----~~~~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~v 153 (1065)
.++.++||+|++-+++++||+||+.|+...++... .+.+..+
T Consensus 75 ~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~----------------------------------~e~~~~v 120 (240)
T d1g2912 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRV 120 (240)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHH
T ss_pred HCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCH----------------------------------HHHHHHH
T ss_conf 245322551200221222310116676330687729998----------------------------------9999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99999919854344433686554476001346799999846980878737987879598999999999987607988999
Q 001507 154 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 233 (1065)
Q Consensus 154 e~il~~lgL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii 233 (1065)
+++++.++|++.+|..+ ..||||||||++|||||+.+|+|++|||||+|||+.++..+++.++++.+..+ ++|+
T Consensus 121 ~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi 194 (240)
T d1g2912 121 REVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTI 194 (240)
T ss_dssp HHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEE
T ss_pred HHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEE
T ss_conf 99998759966762993-----34999999999999998269988982588765698999899999999986369-8899
Q ss_pred EECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 95379647994114089952890778858000899
Q 001507 234 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 234 ~i~q~~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
.++|..+++..++|+|++|++|++++.|++.++..
T Consensus 195 ~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99599999999699999998999999859999982
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=336.41 Aligned_cols=224 Identities=21% Similarity=0.270 Sum_probs=190.7
Q ss_pred CHHHHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---
Q ss_conf 93789888415047753210133733788386699994699999689998994696999714589998893588888---
Q 001507 1 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--- 77 (1065)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~--- 77 (1065)
|..+.++|++..+++ .++.+|+|+|+.+++||+++|+||||||||||+++|+|...|+ +|+|.++|.++....
T Consensus 1 M~~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLI 76 (242)
T ss_dssp CCCEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEES
T ss_pred CCEEEEEEEEEEECC-CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHH
T ss_conf 988999757999889-9989980407898799899999899980999999997586888---745999999951373111
Q ss_pred ---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHH
Q ss_conf ---98417887543456888998999999854149888612437988998861899991257898653116885026899
Q 001507 78 ---PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 154 (1065)
Q Consensus 78 ---~~~~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve 154 (1065)
.++.++||+|++.+++++||+|||.|+....+.. + .+.++.++
T Consensus 77 ~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~--------------------~--------------~~~~~~v~ 122 (242)
T d1oxxk2 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS--------------------K--------------EEIRKRVE 122 (242)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC--------------------H--------------HHHHHHHH
T ss_pred CCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC--------------------H--------------HHHHHHHH
T ss_conf 5312045147730433466665777766556761379--------------------9--------------99999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999198543444336865544760013467999998469808787379878795989999999999876079889999
Q 001507 155 YIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 234 (1065)
Q Consensus 155 ~il~~lgL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~ 234 (1065)
++++.+||++..|..++ .||||||||++||||++.+|+++++||||+|||+.++..+++.++++.+..+.| ++.
T Consensus 123 ~~l~~~gL~~~~~~~p~-----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~t-vi~ 196 (242)
T d1oxxk2 123 EVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLV 196 (242)
T ss_dssp HHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE-EEE
T ss_pred HHHHHCCHHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEE
T ss_conf 99866591766648954-----599999858998757760466145447866799899889989999998635987-999
Q ss_pred ECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 5379647994114089952890778858000899
Q 001507 235 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 235 i~q~~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
++|...++..++|+|++|++|++++.|++.++..
T Consensus 197 vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 197 VSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9799999999699999998999999869999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=329.32 Aligned_cols=198 Identities=23% Similarity=0.290 Sum_probs=166.8
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 6863114687488699999599972899999997899997168999997931890-012353889737998999998999
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 714 ~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+|||+|+..+++.+||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 78843378987998999998999829999999964768--8878899956734652165740561512111174665778
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH
Q ss_conf 99998660399998799999999999999089763367324898887799999999999999729981223189999999
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 793 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~ 872 (1065)
++.|...++.... .++++++++.+++.+..+..+ ..||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 92 nl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 92 NLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp HHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred HHHHHHHHCCCCH------HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 8888776405538------999999999825655575895-----54799984014030434436771443478767998
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 999999999999984-896899992588588997439199993496999917999
Q 001507 873 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~-~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.++..+++.++++.+ .|.|||+++|++. ++...+|++++|. .|+++..|++.
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~-~G~iv~~g~~~ 213 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKPE 213 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 99999999999998647968999749999-9999699999997-99999986999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=321.52 Aligned_cols=205 Identities=22% Similarity=0.308 Sum_probs=183.0
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC--CCCCCEEEEECCCCCCCCC
Q ss_conf 45526863114687488699999599972899999997899997168999997931890--0123538897379989999
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 787 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~~~ 787 (1065)
++++++|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||+||+..+++.
T Consensus 12 yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 12 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred ECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCC
T ss_conf 999999806256884897999999999999999999966988--788879998672446839887218675001546878
Q ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 98999999986603999987999999999999990897633673248988877999999999999997299812231899
Q 001507 788 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 867 (1065)
Q Consensus 788 ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEpt 867 (1065)
+|+.|++.|.+.++. ....+..+.++++++.+++.+..+..+ +.||||||||++||++|+.+|++++|||||
T Consensus 90 ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~iA~al~~~p~illLDEPt 161 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPT 161 (238)
T ss_dssp SBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 667788898998617---998999999999998679788885045-----337998989999999986599988733798
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 99999999999999999984896899992588588997439199993496999917999
Q 001507 868 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 868 sglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+|||+.++..+++++++++++|.||++++|+++ ++...+|++++|. +|++++.|++.
T Consensus 162 ~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~~ 218 (238)
T d1vpla_ 162 SGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTVE 218 (238)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 897989999999999999965998999959899-9999699999998-99999992899
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=324.67 Aligned_cols=211 Identities=23% Similarity=0.316 Sum_probs=183.4
Q ss_pred HHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-CCCEEEEE
Q ss_conf 88415047753210133733788386699994699999689998994696999714589998893588888-98417887
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYV 85 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~-~~~~i~yv 85 (1065)
+|++..++. .+|+|+||.+++||+++|+||||||||||+++|+|...|+ +|+|.++|.++.+.. .++.++||
T Consensus 5 ~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 5 ESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEE
T ss_conf 989999499----7884337898799899999899982999999996476888---788999567346521657405615
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 54345688899899999985414988861243798899886189999125789865311688502689999999198543
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~~ 165 (1065)
+|++.+++++||+||+.|+...+... ..+.++++++.++|.+.
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~ 120 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIK-------------------------------------DPKRVLDTARDLKIEHL 120 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCC-------------------------------------CHHHHHHHHHHTTCTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHHHCCHHH
T ss_conf 12111174665778888877640553-------------------------------------89999999998256555
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
Q ss_conf 44433686554476001346799999846980878737987879598999999999987607988999953796479941
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~l 245 (1065)
.|..++ .||||||||++||||++.+|++++|||||+|||+.++..+++.++++.+.. +.+|+.++|...++..+
T Consensus 121 ~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vtHd~~~~~~~ 194 (229)
T d3d31a2 121 LDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIM 194 (229)
T ss_dssp TTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHH
T ss_pred HHCCHH-----HCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHH
T ss_conf 758955-----479998401403043443677144347876799899999999999998647-96899974999999996
Q ss_pred CCCEEEECCCCEEEECCCCHHH
Q ss_conf 1408995289077885800089
Q 001507 246 FDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 246 fD~I~iL~~G~iv~~G~~~~l~ 267 (1065)
+|+|++|.+|++++.|+++++.
T Consensus 195 ~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 195 ADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp CSEEEEESSSCEEEEECHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHH
T ss_conf 9999999799999986999998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=327.30 Aligned_cols=219 Identities=21% Similarity=0.298 Sum_probs=186.7
Q ss_pred HHHHHHHCCC-CCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------
Q ss_conf 8884150477-532101337337883866999946999996899989946969997145899988935888889------
Q 001507 6 LRQLRIYRGN-RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------ 78 (1065)
Q Consensus 6 ~~~~~~~~~~-~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~------ 78 (1065)
++|+++.++. +..+.+|+|+|+.+++||+++|+||||||||||+++|+|...|+ +|+|.++|.++.....
T Consensus 4 v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHH
T ss_conf 9827999699981489861505788699799998999898889999875886366---7732886768520875551155
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 84178875434568889989999998541498886124379889988618999912578986531168850268999999
Q 001507 79 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 158 (1065)
Q Consensus 79 ~~~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~ 158 (1065)
++.++||+|++-+++.+||+||+.|+..+.+.. + .+....++++++
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~--------------------~--------------~~~~~~v~~~L~ 126 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP--------------------K--------------DEVKRRVTELLS 126 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCC--------------------T--------------THHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--------------------H--------------HHHHHHHHHHHH
T ss_conf 416643022522279964999999999984999--------------------8--------------999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 91985434443368655447600134679999984698087873798787959899999999998760798899995379
Q 001507 159 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 238 (1065)
Q Consensus 159 ~lgL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~ 238 (1065)
.+||++.+|..++ .||||||||++||||++.+|+++++||||+|||+.++..+++.|+++.+..+.| ++.++|.
T Consensus 127 ~vgL~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~t-vi~vTHd 200 (240)
T d3dhwc1 127 LVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT-ILLITHE 200 (240)
T ss_dssp HHSTTTTTSSCBS-----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCE-EEEEBSC
T ss_pred HCCCCHHHHCCHH-----HCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEECCC
T ss_conf 7699035548943-----499999989998640105898687446556589888567999999998646978-9998389
Q ss_pred CHHHHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 64799411408995289077885800089
Q 001507 239 APEAYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 239 ~~~~~~lfD~I~iL~~G~iv~~G~~~~l~ 267 (1065)
..++..++|+|++|++|++++.|+++++.
T Consensus 201 l~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 201 MDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999869999999799999987999997
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=317.93 Aligned_cols=206 Identities=22% Similarity=0.285 Sum_probs=178.0
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC----------------CCCC
Q ss_conf 455268631146874886999995999728999999978999971689999979318900----------------1235
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----------------TFAR 773 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~----------------~~~~ 773 (1065)
+++..+|++||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++
T Consensus 12 yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~ 89 (258)
T d1b0ua_ 12 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89 (258)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHH
T ss_pred ECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHC
T ss_conf 899998815066886997999998999829999999974766--789977999999336775200002351767999745
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 388973799899999899999998660399998799999999999999089763-3673248988877999999999999
Q 001507 774 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAV 852 (1065)
Q Consensus 774 ~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~lS~Gqr~r~~ia~ 852 (1065)
.+|||+|+..+++.+||.|++.+..... ...+..+.++++.++++.+++.+. .+..+ ..|||||+||++|||
T Consensus 90 ~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAr 162 (258)
T d1b0ua_ 90 RLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIAR 162 (258)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHH
T ss_pred CEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHH
T ss_conf 4489983323141101021365657876--299989999999999998299524430682-----205677888989999
Q ss_pred HHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 99729981223189999999999999999999984896899992588588997439199993496999917999
Q 001507 853 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 853 ~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
+|+.+|++|+|||||+|||+.++..+++.+++++++|.|||+++|++. ++...+|++++|. .|++++.|++.
T Consensus 163 aL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~-~G~iv~~g~~~ 234 (258)
T d1b0ua_ 163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH-QGKIEEEGDPE 234 (258)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 984399878852455568878888998765541036883389948999-9998699999997-99999984999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=331.89 Aligned_cols=223 Identities=23% Similarity=0.342 Sum_probs=118.0
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEE
Q ss_conf 888415047753210133733788386699994699999689998994696999714589998893588888---98417
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~~i 82 (1065)
++|+++.++.++++.+|+|+|+.+++||+++|+||||||||||+++|+|.+.|. +|+|.+||.++.+.. .++.+
T Consensus 14 ~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 14 FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp EEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHH
T ss_conf 999899889999997674438998499899999999984999999986143787---68998899853110137888776
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 88754345688899899999985414988861243798899886189999125789865311688502689999999198
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL 162 (1065)
+||+|++++++ .||+||+.|+...+ .......+.+.. ....-..-+|
T Consensus 91 ~~v~Q~~~lf~-~tv~eni~~g~~~~---~~~~~~~~~~~~-----------------------------~~~~~~i~~l 137 (251)
T d1jj7a_ 91 AAVGQEPQVFG-RSLQENIAYGLTQK---PTMEEITAAAVK-----------------------------SGAHSFISGL 137 (251)
T ss_dssp EEECSSCCCCS-SBHHHHHHCSCSSC---CCHHHHHHHHHH-----------------------------HTCHHHHHTS
T ss_pred HHCCCCCCCCC-CCHHHHHHHHHCCC---CHHHHHHHHHHH-----------------------------HHHHHHHHHC
T ss_conf 54045650027-63465545421013---027889999999-----------------------------9899999856
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 54344433686554476001346799999846980878737987879598999999999987607988999953796479
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~ 242 (1065)
++..+|.+++.+. .||||||||++||||++.+|+|++||||||+||+.++..+++.|+++.+..+.|+|+ ++|... .
T Consensus 138 ~~g~~~~i~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l~-~ 214 (251)
T d1jj7a_ 138 PQGYDTEVDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHLS-L 214 (251)
T ss_dssp TTGGGCBCCSSCS-SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCHH-H
T ss_pred CCCCHHHHHCCCC-CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHH-H
T ss_conf 1211136751676-689547048998604456870787167576568536899999999976506989999-959799-9
Q ss_pred HHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 9411408995289077885800089
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 243 ~~lfD~I~iL~~G~iv~~G~~~~l~ 267 (1065)
...+|+|++|++|+++++|++.+++
T Consensus 215 ~~~aDrI~vl~~G~iv~~Gt~~eLl 239 (251)
T d1jj7a_ 215 VEQADHILFLEGGAIREGGTHQQLM 239 (251)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9859999999899999988999998
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=319.61 Aligned_cols=208 Identities=24% Similarity=0.285 Sum_probs=175.1
Q ss_pred CCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC----CCCCEEEEECCCCCCC
Q ss_conf 455268631146874886999995999728999999978999971689999979318900----1235388973799899
Q 001507 710 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHS 785 (1065)
Q Consensus 710 ~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~~~v~q~~~~~ 785 (1065)
+++.++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+..++
T Consensus 14 yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~ 91 (254)
T d1g6ha_ 14 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91 (254)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred ECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 799688712179988997999999999849999999977976--887379999996640569999983387257764247
Q ss_pred CCCCHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999899999998660399----------9987999999999999990897633673248988877999999999999997
Q 001507 786 PGLTVLESLLFSAWLRLP----------SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 855 (1065)
Q Consensus 786 ~~ltv~e~l~f~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~ 855 (1065)
+.+||.|++.+....+.. .....+...+++.++++.+++.+..+..+ ..||||||||++|||+|+
T Consensus 92 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~Qrv~iAraL~ 166 (254)
T d1g6ha_ 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRALM 166 (254)
T ss_dssp GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH-----HHCCCHHHHHHHHHHHHH
T ss_conf 887423214301333034504566542135328999999999987619630205953-----569918888999999997
Q ss_pred HCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 29981223189999999999999999999984896899992588588997439199993496999917999
Q 001507 856 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 856 ~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.+|++|+|||||+|||+.++..+++.+++++++|.||++++|+++ ++...+|++++|. .|+++..|+++
T Consensus 167 ~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~-~G~iv~~g~~~ 235 (254)
T d1g6ha_ 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF-NGQIIAEGRGE 235 (254)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE-TTEEEEEEESH
T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECHH
T ss_conf 592723243976569999999999999999978998999947699-9998699999996-99899996689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=317.84 Aligned_cols=216 Identities=21% Similarity=0.318 Sum_probs=179.1
Q ss_pred EEEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 05899311677740410012463345526863114687488699999599972899999997899997168999997931
Q 001507 686 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 765 (1065)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~ 765 (1065)
.-+..+|++.. +++..+|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~-------------yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVY-------------YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEE-------------ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEE-------------ECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999618999-------------899888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 8900---1-2353889737998999998999999986603999987999999999999990-897633673248988877
Q 001507 766 KRQE---T-FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGL 840 (1065)
Q Consensus 766 ~~~~---~-~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l 840 (1065)
+... . .+..++|+||+..+++.+||+|++.+.+..+... ...++.++++++.+ ++.+..+..+ ..|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHCHHHHHHCCH-----HHC
T ss_conf 4466088888742355676554577636999999888732788----8999999999987417688875854-----338
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 99999999999999729981223189999999999999999999984896899992588588997439199993496999
Q 001507 841 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 920 (1065)
Q Consensus 841 S~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~ 920 (1065)
|||||||++|||+|+.+|++|+|||||+|||+.++..+++.+++++++|.||++++|++. ++...+|++++|. .|+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~-~G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-9999699999998-99999
Q ss_pred EECCCCC
Q ss_conf 9179998
Q 001507 921 YAGPLGS 927 (1065)
Q Consensus 921 ~~g~~~~ 927 (1065)
+.|++.+
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EECCHHH
T ss_conf 9848999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=324.35 Aligned_cols=221 Identities=22% Similarity=0.331 Sum_probs=148.5
Q ss_pred HHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCE
Q ss_conf 9888415047753210133733788386699994699999689998994696999714589998893588888---9841
Q 001507 5 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRT 81 (1065)
Q Consensus 5 ~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~~ 81 (1065)
.++|++|.++. ...++|+|+|+.+++|+.++|+||||||||||+++|+|.+.|. +|+|.+||.++.... .++.
T Consensus 3 ~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~ 78 (241)
T d2pmka1 3 TFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQ 78 (241)
T ss_dssp EEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHH
T ss_pred EEEEEEEEECC-CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCE
T ss_conf 99999999089-9960374248998499999999999998999999997357888---8899999999440024655352
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 78875434568889989999998541498886124379889988618999912578986531168850268999999919
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lg 161 (1065)
++||+|+++++ +.||+|||.|+... ...+.+.++++... ..-..-.
T Consensus 79 i~~v~Q~~~lf-~~Ti~eNi~~~~~~----~~~~~~~~~~~~~~-----------------------------~~~~i~~ 124 (241)
T d2pmka1 79 VGVVLQDNVLL-NRSIIDNISLANPG----MSVEKVIYAAKLAG-----------------------------AHDFISE 124 (241)
T ss_dssp EEEECSSCCCT-TSBHHHHHCTTSTT----CCHHHHHHHHHHHT-----------------------------CHHHHTT
T ss_pred EEEEECCCCCC-CCCCCCCCCCCCCC----CCHHHHHHHHHHHH-----------------------------HHHHHHH
T ss_conf 88982446557-84000352235755----43888999999975-----------------------------5788876
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 85434443368655447600134679999984698087873798787959899999999998760798899995379647
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~ 241 (1065)
++...+|.+|+.+. +|||||||||+||||++.+|+|++||||||+||+.++..+++.++++.+ +.|+|+ ++|....
T Consensus 125 ~~~~~~t~i~~~g~-~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~ 200 (241)
T d2pmka1 125 LREGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVII-IAHRLST 200 (241)
T ss_dssp STTGGGSBCSTTTT-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECSSGGG
T ss_pred HHCCHHHHCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHHH
T ss_conf 32013443278788-6698898987544344416513556477655598999999999999858--998999-9788999
Q ss_pred HHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 994114089952890778858000899
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 242 ~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
...+|+|++|++|+++++|++.++..
T Consensus 201 -~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 201 -VKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp -GTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -98499999998999999889999982
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.6e-45 Score=315.93 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=177.3
Q ss_pred HHHHHHHCCC-CCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------
Q ss_conf 8884150477-532101337337883866999946999996899989946969997145899988935888889------
Q 001507 6 LRQLRIYRGN-RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------ 78 (1065)
Q Consensus 6 ~~~~~~~~~~-~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~------ 78 (1065)
++|+++.++. ...+.+|+|+||.+++||+++|+|||||||||||++|+|...|+ +|+|.++|.++.....
T Consensus 4 i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHH
T ss_conf 9907999489982089871337788499799998899998216557506887777---6626999998576885551231
Q ss_pred -CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf -8417887543456888998999999854149888612437988998861899991257898653116885026899999
Q 001507 79 -PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 157 (1065)
Q Consensus 79 -~~~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il 157 (1065)
++.++||+|++.+++.+||+||+.|+...+....... .+....+.+.+
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l 129 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECL 129 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCH-------------------------------HHHHHHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCH-------------------------------HHHHHHHHHHH
T ss_conf 25557788041241768668887757888722478999-------------------------------99999999988
Q ss_pred HHHCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 9919854-344433686554476001346799999846980878737987879598999999999987607988999953
Q 001507 158 KILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 236 (1065)
Q Consensus 158 ~~lgL~~-~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~ 236 (1065)
+.++|++ .++..+ ..||||||||++||||++.+|+++++||||||||+.++..+++.++++.+..+.|+|+ ++
T Consensus 130 ~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~-vT 203 (230)
T d1l2ta_ 130 KMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV-VT 203 (230)
T ss_dssp HHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-EC
T ss_pred HHHCHHHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-EC
T ss_conf 76242345534880-----2389999999998756522788899468765469899999999999999843999999-87
Q ss_pred CCCHHHHHHCCCEEEECCCCEEEECCC
Q ss_conf 796479941140899528907788580
Q 001507 237 QPAPEAYELFDDVILLSEGQIVYQGPR 263 (1065)
Q Consensus 237 q~~~~~~~lfD~I~iL~~G~iv~~G~~ 263 (1065)
|....+ .++|+|++|.+|++++.|+.
T Consensus 204 Hd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 204 HDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp SCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred CCHHHH-HHCCEEEEEECCEEEEECCC
T ss_conf 888999-86998999989999995257
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=328.72 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=167.5
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEE
Q ss_conf 888415047753210133733788386699994699999689998994696999714589998893588888---98417
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTS 82 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~~i 82 (1065)
++|++|.++.. +++|+|+|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+||.++.+.. .++.+
T Consensus 4 ~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 4 ARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp EEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTC
T ss_pred EEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHE
T ss_conf 99889987999--84142258998599999999999997999999999960989---87798899884424678887436
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 88754345688899899999985414988861243798899886189999125789865311688502689999999198
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 162 (1065)
Q Consensus 83 ~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL 162 (1065)
+||+|++++++. ||+||+.++..... ..+.+.+.+..... .-....+
T Consensus 79 ~~v~Q~~~lf~~-ti~eNi~~~~~~~~---~~~~~~~~~~~~~~-----------------------------~~~~~~~ 125 (242)
T d1mv5a_ 79 GFVSQDSAIMAG-TIRENLTYGLEGDY---TDEDLWQVLDLAFA-----------------------------RSFVENM 125 (242)
T ss_dssp CEECCSSCCCCE-EHHHHTTSCTTSCS---CHHHHHHHHHHHTC-----------------------------TTTTTSS
T ss_pred EEECCCCCCCCC-CHHHHEECCCCCCC---CHHHHHHHHHHHHH-----------------------------HHHHCCC
T ss_conf 797566545785-34543012445554---23567789999975-----------------------------5542037
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 54344433686554476001346799999846980878737987879598999999999987607988999953796479
Q 001507 163 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 163 ~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~ 242 (1065)
++..+|.+|+++. +|||||||||+||||++.+|+|++||||||+||+.++..+++.++++.+ +.|+|+ ++|....+
T Consensus 126 ~~~~~~~i~~~g~-~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~ 201 (242)
T d1mv5a_ 126 PDQLNTEVGERGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLV-IAHRLSTI 201 (242)
T ss_dssp TTGGGCEESTTSB-CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEE-ECCSHHHH
T ss_pred CCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHH
T ss_conf 4210152368789-8799999999999998529989996588655698899999887888717--998999-97879999
Q ss_pred HHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 94114089952890778858000899
Q 001507 243 YELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 243 ~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
..+|+|++|++|+++++|++.+++.
T Consensus 202 -~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 202 -VDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp -HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred -HHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -8499999998999999999999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.4e-45 Score=320.92 Aligned_cols=212 Identities=24% Similarity=0.393 Sum_probs=114.0
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 58993116777404100124633455268631146874886999995999728999999978999971689999979318
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++..+ ...+.+|+|||+.+++|+++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 16 ~I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSC-----------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC-----------CCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEC
T ss_conf 799998899959-----------999760644389983998999988999809999999971278--6300015399875
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 90---01235388973799899999899999998660399998799999999999999089763-------367324898
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ 836 (1065)
.. ..+++.++||+|++.++. .|++||+.|.. + .... +.++++++..++.+. .++.++..
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGER- 151 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred CCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCHHCCC-
T ss_conf 30788886341456510156899-87999985158----6-7999----999999999697999973624201033388-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88779999999999999972998122318999999999999999999998489689999258858899743919999349
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
...||||||||++|||+|+.+|+|++||||||+||+.++..+++.++++. .++|+|+++|+++ ....+|++++|. +
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~-~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE-N 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 89849999999999999855998999837654479779999999999875-3888999968999--998599999998-9
Q ss_pred CEEEEECCCC
Q ss_conf 6999917999
Q 001507 917 GELIYAGPLG 926 (1065)
Q Consensus 917 g~~~~~g~~~ 926 (1065)
|+++..|++.
T Consensus 228 G~iv~~G~~~ 237 (255)
T d2hyda1 228 GHIVETGTHR 237 (255)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
T ss_conf 9999988999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=320.71 Aligned_cols=197 Identities=26% Similarity=0.345 Sum_probs=106.8
Q ss_pred EEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCC
Q ss_conf 26863114687488699999599972899999997899997168999997931890---012353889737998999998
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 789 (1065)
Q Consensus 713 ~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lt 789 (1065)
.++|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.+||.++.. ..+++.++||+|++.++. .|
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~t 104 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DT 104 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SB
T ss_pred CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCCCHHHHHHHHHEEEEEEECCCCCC-CC
T ss_conf 763533289985999999999999859999999862168--884689878801211106654206879950254478-62
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99999998660399998799999999999999089763-------36732489888779999999999999972998122
Q 001507 790 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 862 (1065)
Q Consensus 790 v~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~ 862 (1065)
+++++.+... .....+ .++++++..++.+. .++.++.. ...||||||||++|||||+.+|++|+
T Consensus 105 i~~n~~~~~~----~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ili 175 (253)
T d3b60a1 105 VANNIAYART----EEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILI 175 (253)
T ss_dssp HHHHHHTTTT----SCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHCCC----CCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 0243320572----208999----99999999817999973554410143488-89849999999999999954998899
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 318999999999999999999998489689999258858899743919999349699991799
Q 001507 863 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 863 lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|+|++|. .|+++..|++
T Consensus 176 lDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~-~G~Iv~~G~~ 234 (253)
T d3b60a1 176 LDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVE-DGIIVERGTH 234 (253)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEE-TTEEEEEECH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CCEEEEECCH
T ss_conf 516444589889999999998752-2788999988799--998599999998-9999998899
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7e-45 Score=315.27 Aligned_cols=218 Identities=26% Similarity=0.305 Sum_probs=185.9
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--CCCEEE
Q ss_conf 888415047753210133733788386699994699999689998994696999714589998893588888--984178
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSA 83 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~--~~~~i~ 83 (1065)
++|++..++ .+++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++.++
T Consensus 5 v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 5 VKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp EEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEE
T ss_pred EEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEE
T ss_conf 995899999---999980625688489799999999999999999996698878---88799986724468398872186
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 87543456888998999999854149888612437988998861899991257898653116885026899999991985
Q 001507 84 YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 163 (1065)
Q Consensus 84 yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~ 163 (1065)
||||++.+++++|+.||+.|...+..... .+....++.+++.++|.
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~ 124 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLG 124 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCG
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCH
T ss_conf 75001546878667788898998617998----------------------------------99999999999867978
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH
Q ss_conf 43444336865544760013467999998469808787379878795989999999999876079889999537964799
Q 001507 164 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 243 (1065)
Q Consensus 164 ~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~ 243 (1065)
+..+..++ .||||||||++||||++.+|+|++|||||+|||+.++..+++.+++++. . +++|+.++|..+++.
T Consensus 125 ~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~ 197 (238)
T d1vpla_ 125 EKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVE 197 (238)
T ss_dssp GGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHT
T ss_pred HHHHHHHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHH
T ss_conf 88850453-----3799898999999998659998873379889798999999999999996-5-998999959899999
Q ss_pred HHCCCEEEECCCCEEEECCCCHHHHHH
Q ss_conf 411408995289077885800089998
Q 001507 244 ELFDDVILLSEGQIVYQGPRVSVLDFF 270 (1065)
Q Consensus 244 ~lfD~I~iL~~G~iv~~G~~~~l~~~f 270 (1065)
.++|+|++|++|++++.|+++++...+
T Consensus 198 ~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 198 FLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp TTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 969999999899999992899998652
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=317.76 Aligned_cols=213 Identities=26% Similarity=0.383 Sum_probs=178.2
Q ss_pred HHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEE
Q ss_conf 884150477532101337337883866999946999996899989946969997145899988935888889----8417
Q 001507 7 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTS 82 (1065)
Q Consensus 7 ~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~----~~~i 82 (1065)
+|+++.++ .+.+|+|+||.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++..... +..+
T Consensus 10 ~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 10 QSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 61899989---988883025788899799999999985999999996788888---038984244344660888887423
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH-C
Q ss_conf 887543456888998999999854149888612437988998861899991257898653116885026899999991-9
Q 001507 83 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-G 161 (1065)
Q Consensus 83 ~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~l-g 161 (1065)
+|++|+.-+++++||+||+.+++....... .....++.++..+ +
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~ 128 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKE-----------------------------------GIKRDLEWIFSLFPR 128 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSS-----------------------------------HHHHHHHHHHHHCHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCHH-----------------------------------HHHHHHHHHHHHHHC
T ss_conf 556765545776369999998887327888-----------------------------------999999999987417
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 85434443368655447600134679999984698087873798787959899999999998760798899995379647
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~ 241 (1065)
|.+..+..++ .||||||||++||||++.+|++++|||||+|||+.++..+++.+++++. . +++|+.++|...+
T Consensus 129 l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~ 201 (240)
T d1ji0a_ 129 LKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALG 201 (240)
T ss_dssp HHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHH
T ss_pred HHHHHHCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHH
T ss_conf 6888758543-----3899999999999999829987400398867999999999999999996-8-9989999588999
Q ss_pred HHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 99411408995289077885800089
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~lfD~I~iL~~G~iv~~G~~~~l~ 267 (1065)
+..++|+|++|.+|++++.|++.++.
T Consensus 202 ~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 202 ALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99969999999899999984899984
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.2e-44 Score=309.95 Aligned_cols=194 Identities=24% Similarity=0.365 Sum_probs=166.1
Q ss_pred EEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 114687488699999599972899999997899997168999997931890-0123538897379989999989999999
Q 001507 718 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 796 (1065)
Q Consensus 718 ~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~f 796 (1065)
|+|+.+. +|.++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.+++.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHH
Q ss_conf 86603999987999999999999990897633673248988877999999999999997299812231899999999999
Q 001507 797 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 876 (1065)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~ 876 (1065)
.. + .....+.+++++++++.+++.+..+..+ ..||||||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 999999999848-96899992588588997439199993496999917999
Q 001507 877 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 877 ~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
.+++.++++.++ |.|||+++|++. ++...+|++++|. .|+++..|++.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~~ 212 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECHH
T ss_conf 9999999998743976999818999-9999699999998-99999990699
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.2e-45 Score=316.90 Aligned_cols=228 Identities=23% Similarity=0.321 Sum_probs=185.3
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCE
Q ss_conf 8884150477532101337337883866999946999996899989946969997145899988935888889----841
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRT 81 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~----~~~ 81 (1065)
++|++..++ .+++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++..... ++.
T Consensus 7 v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 7 TENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHC
T ss_conf 977899979---968871217998899799999999984999999997797688---73799999966405699999833
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 78875434568889989999998541498886124379889988618999912578986531168850268999999919
Q 001507 82 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 161 (1065)
Q Consensus 82 i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lg 161 (1065)
++|++|++-+++++||.||+.++...+..... ...... ...++. .+....++.+++.++
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~-------~~~~~~-~~~~~~-------------~~~~~~~~~~l~~~~ 139 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPL-------NSLFYK-KWIPKE-------------EEMVEKAFKILEFLK 139 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHH-------HHHHHC-SSCCCC-------------HHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCH-------HHHHHH-CCCCCH-------------HHHHHHHHHHHHHCC
T ss_conf 87257764247887423214301333034504-------566542-135328-------------999999999987619
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 85434443368655447600134679999984698087873798787959899999999998760798899995379647
Q 001507 162 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 241 (1065)
Q Consensus 162 L~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~ 241 (1065)
+.+..|..++ .||||||||++||||++.+|++++|||||+|||+.++..+++.+++++. .+++|+.++|..++
T Consensus 140 l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~ 212 (254)
T d1g6ha_ 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDI 212 (254)
T ss_dssp CGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCST
T ss_pred CCHHCCCCHH-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHH
T ss_conf 6302059535-----6991888899999999759272324397656999999999999999997--89989999476999
Q ss_pred HHHHCCCEEEECCCCEEEECCCCHHH
Q ss_conf 99411408995289077885800089
Q 001507 242 AYELFDDVILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 242 ~~~lfD~I~iL~~G~iv~~G~~~~l~ 267 (1065)
+..++|+|++|++|++++.|+++++.
T Consensus 213 ~~~~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 213 VLNYIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp TGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred HHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 99869999999699899996689986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-44 Score=312.27 Aligned_cols=199 Identities=23% Similarity=0.358 Sum_probs=172.2
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 733788386699994699999689998994696999714589998893588888-9841788754345688899899999
Q 001507 24 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLD 102 (1065)
Q Consensus 24 ~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~-~~~~i~yv~Q~d~l~~~lTVrE~i~ 102 (1065)
|+|+.+. +++++|+||||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++.++||+|++.+++++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 98541498886124379889988618999912578986531168850268999999919854344433686554476001
Q 001507 103 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 182 (1065)
Q Consensus 103 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~~~dT~VG~~~~~~LSGGQ 182 (1065)
|+.+. . + +. +.++.++++++.+||.+..+..+ ..|||||
T Consensus 93 ~~l~~--~----~------~~------------------------~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~ 131 (240)
T d2onka1 93 YGLRN--V----E------RV------------------------ERDRRVREMAEKLGIAHLLDRKP-----ARLSGGE 131 (240)
T ss_dssp TTCTT--S----C------HH------------------------HHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHH
T ss_pred HHHCC--C----C------HH------------------------HHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHH
T ss_conf 53233--6----7------78------------------------89999999998638375665794-----4489999
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEECCCCEEEECC
Q ss_conf 34679999984698087873798787959899999999998760798899995379647994114089952890778858
Q 001507 183 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 262 (1065)
Q Consensus 183 KrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I~iL~~G~iv~~G~ 262 (1065)
||||+||||++.+|++++|||||||||+.++..+++.++++.+..+.+ ++.++|...++..++|+|++|++|+++++|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976-9998189999999699999998999999906
Q ss_pred CCHHHH
Q ss_conf 000899
Q 001507 263 RVSVLD 268 (1065)
Q Consensus 263 ~~~l~~ 268 (1065)
+.++.+
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999832
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.8e-45 Score=314.12 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=170.1
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 58993116777404100124633455268631146874886999995999728999999978999971689999979318
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
++.++|+++..+ ...+.+|+|||+.+++|+++||+||||||||||+++|.|... +.+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEEC-----------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 929999999908-----------999603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCC
Q ss_conf 90---012353889737998999998999999986603999987999999999999990897-------63367324898
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------SLSGALIGLPG 836 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~ 836 (1065)
.. ..+++.++||+|++.++. .|++||+.|.. .....+ .+++..+..++. .-.++.++..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVE----KVIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHH----HHHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred CCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCC-----CCCCHH----HHHHHHHHHHHHHHHHHHHCCHHHHCCCC-
T ss_conf 40024655352889824465578-40003522357-----554388----89999999755788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88779999999999999972998122318999999999999999999998489689999258858899743919999349
Q 001507 837 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 916 (1065)
Q Consensus 837 ~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~g 916 (1065)
...||||||||++|||+|+.+|+|++||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|++++|. +
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 88669889898754434441651355647765559899999999999985-8998999978899--998499999998-9
Q ss_pred CEEEEECCCC
Q ss_conf 6999917999
Q 001507 917 GELIYAGPLG 926 (1065)
Q Consensus 917 g~~~~~g~~~ 926 (1065)
|+++..|++.
T Consensus 213 G~Iv~~G~~~ 222 (241)
T d2pmka1 213 GKIVEQGKHK 222 (241)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
T ss_conf 9999988999
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-43 Score=307.35 Aligned_cols=217 Identities=21% Similarity=0.210 Sum_probs=179.4
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC--------
Q ss_conf 888415047753210133733788386699994699999689998994696999714589998893588888--------
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------- 77 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~-------- 77 (1065)
++|+++.++ ..++|+|+||.+++||+++|+||||||||||+++|+|.+.|+ +|+|.++|.++....
T Consensus 5 v~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 5 VIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp EEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCC
T ss_conf 997899989---999881506688699799999899982999999997476678---99779999993367752000023
Q ss_pred --------CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf --------984178875434568889989999998541498886124379889988618999912578986531168850
Q 001507 78 --------PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 149 (1065)
Q Consensus 78 --------~~~~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~ 149 (1065)
.++.++||+|++-+++.+||.||+.|+........ . .+.
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~-------------------~--------------~~~ 125 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS-------------------K--------------HDA 125 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCC-------------------H--------------HHH
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCC-------------------H--------------HHH
T ss_conf 5176799974544899833231411010213656578762999-------------------8--------------999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 2689999999198543-444336865544760013467999998469808787379878795989999999999876079
Q 001507 150 SLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 228 (1065)
Q Consensus 150 ~~~ve~il~~lgL~~~-~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~ 228 (1065)
.+.+.++++.++|.+. .+... ..||||||||++||||++.+|+++++||||+|||+.++..+++.++++.+ .+
T Consensus 126 ~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g 199 (258)
T d1b0ua_ 126 RERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG 199 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CC
T ss_conf 9999999998299524430682-----20567788898999998439987885245556887888899876554103-68
Q ss_pred CEEEEEECCCCHHHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 8899995379647994114089952890778858000899
Q 001507 229 GTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 229 ~t~Ii~i~q~~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
++|+.++|...++..++|+|++|++|++++.|++.++..
T Consensus 200 -~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 200 -KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp -CCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred -CCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -833899489999998699999997999999849999983
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.3e-44 Score=308.31 Aligned_cols=217 Identities=22% Similarity=0.320 Sum_probs=170.0
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 58993116777404100124633455268631146874886999995999728999999978999971689999979318
Q 001507 687 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 766 (1065)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~ 766 (1065)
.+.++|+++..+- ..+..+|+|+|+.+++||++||+||||||||||+++|.|... +.+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCC----------CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 6999998998899----------999976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 90---01235388973799899999899999998660399998799999-----99999999908976336732489888
Q 001507 767 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR-----AFVEEVMELVELTSLSGALIGLPGIN 838 (1065)
Q Consensus 767 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~ 838 (1065)
.. ..+++.++||+|++.+++ .|++|++.|.... ........ ....+.++ .+.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-6346554542101----302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 77999999999999997299812231899999999999999999999848-96899992588588997439199993496
Q 001507 839 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGG 917 (1065)
Q Consensus 839 ~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~-~~tvi~~~H~~~~~~~~~~d~~~~l~~gg 917 (1065)
.||||||||++|||+|+.+|+|++||||||+||+.+...+++.|+++.++ ++|+|+++|+++ ..+.+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--998599999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999917999
Q 001507 918 ELIYAGPLG 926 (1065)
Q Consensus 918 ~~~~~g~~~ 926 (1065)
+++..|++.
T Consensus 228 ~iv~~Gt~~ 236 (251)
T d1jj7a_ 228 AIREGGTHQ 236 (251)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
T ss_conf 999988999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.6e-44 Score=309.11 Aligned_cols=211 Identities=26% Similarity=0.419 Sum_probs=168.9
Q ss_pred EEEECEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 89931167774041001246334552686311468748869999959997289999999789999716899999793189
Q 001507 688 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 767 (1065)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~ 767 (1065)
++++|+++..+ +.+.+|+|||+.+++|+++||+||||||||||+++|+|... +.+|+|.+||.++.
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 79998899879------------99841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCC
Q ss_conf 0---0123538897379989999989999999866039999879999999999999908976-------33673248988
Q 001507 768 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPGI 837 (1065)
Q Consensus 768 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~ 837 (1065)
. ..+++.++||+|++.+++. |++|++.+... ...... .+++.++..++.. ..++.++.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 24678887436797566545785-34543012445----554235----67789999975554203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 87799999999999999729981223189999999999999999999984896899992588588997439199993496
Q 001507 838 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 917 (1065)
Q Consensus 838 ~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg 917 (1065)
..||||||||++|||||+.+|+|++||||||+||+.++..+++.++++. +++|||+++|+++ ....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--998499999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999917999
Q 001507 918 ELIYAGPLG 926 (1065)
Q Consensus 918 ~~~~~g~~~ 926 (1065)
+++..|++.
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-44 Score=311.70 Aligned_cols=187 Identities=22% Similarity=0.351 Sum_probs=95.2
Q ss_pred EEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 26863114687488699999599972899999997899997168999997931890012353889737998999998999
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 713 ~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
+++|+|+|+.+++||++||+||||||||||+++|+|... +.+|.|.++|. ++|++|+..+++. |++|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCSE-EHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCCC-EEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------9998164302676-0321
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 9999866039999879999999999999908-------976336732489888779999999999999972998122318
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVE-------LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 865 (1065)
Q Consensus 793 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDE 865 (1065)
++.|... ..... .+.+++..+ +.+..++.++.. ...||||||||++|||+|+.+|+||+|||
T Consensus 116 ni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCCC------CCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 4203334------56057----9999999776999984612332355554-23779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999999999984896899992588588997439199993496999917999
Q 001507 866 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 866 ptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|. .|++++.|++.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 5544898999999999998862899999992528--9998599999998-99999987899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-42 Score=299.08 Aligned_cols=223 Identities=23% Similarity=0.357 Sum_probs=175.6
Q ss_pred HHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCC
Q ss_conf 89888415047753210133733788386699994699999689998994696999714589998893588888---984
Q 001507 4 ALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPR 80 (1065)
Q Consensus 4 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~ 80 (1065)
+.++|++|.++. .+.++|+|+|+.+++||.++|+||||||||||+++|+|.+.|. +|+|.++|.++.+.. .++
T Consensus 14 I~~~nvsf~Y~~-~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 14 LEFRNVTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp EEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEECC-CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHH
T ss_conf 999988999299-9976353328998599999999999985999999986216888---468987880121110665420
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 17887543456888998999999854149888612437988998861899991257898653116885026899999991
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~l 160 (1065)
.++||+|+++++. .|+++|+.|+.... ...+.+.++++... .... .-
T Consensus 90 ~i~~v~Q~~~l~~-~ti~~n~~~~~~~~---~~~~~i~~a~~~~~---------------------------l~~~--i~ 136 (253)
T d3b60a1 90 QVALVSQNVHLFN-DTVANNIAYARTEE---YSREQIEEAARMAY---------------------------AMDF--IN 136 (253)
T ss_dssp TEEEECSSCCCCS-SBHHHHHHTTTTSC---CCHHHHHHHHHTTT---------------------------CHHH--HH
T ss_pred EEEEEEECCCCCC-CCHHHHHHHCCCCC---CCHHHHHHHHHHHH---------------------------HHHH--HH
T ss_conf 6879950254478-62024332057220---89999999999981---------------------------7999--97
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 98543444336865544760013467999998469808787379878795989999999999876079889999537964
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~ 240 (1065)
.|+++.+|.+|+.+. +|||||||||+||||++.+|+|++||||||+||+.++..+++.|+++.+ ++|+|+ ++|...
T Consensus 137 ~l~~gl~t~~~~~~~-~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~ 212 (253)
T d3b60a1 137 KMDNGLDTIIGENGV-LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLV-IAHRLS 212 (253)
T ss_dssp HSTTGGGSBCCTTSC-SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGG
T ss_pred HCCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHH
T ss_conf 355441014348889-8499999999999999549988995164445898899999999987522--788999-988799
Q ss_pred HHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 7994114089952890778858000899
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 241 ~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
. ...+|+|++|++|+++++|++.+++.
T Consensus 213 ~-~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 213 T-IEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred H-HHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9-98599999998999999889999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.7e-43 Score=303.61 Aligned_cols=222 Identities=23% Similarity=0.363 Sum_probs=176.4
Q ss_pred HHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCC
Q ss_conf 89888415047753210133733788386699994699999689998994696999714589998893588888---984
Q 001507 4 ALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPR 80 (1065)
Q Consensus 4 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~---~~~ 80 (1065)
+.++|++|.++. ...++|+|+|+.+++|+.++|+|+||||||||+++|+|.+.|+ +|+|.++|.++.+.. .++
T Consensus 17 I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 17 IDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp EEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEEEEEECC-CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHH
T ss_conf 999988999599-9976064438998399899998899980999999997127863---000153998753078888634
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 17887543456888998999999854149888612437988998861899991257898653116885026899999991
Q 001507 81 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 160 (1065)
Q Consensus 81 ~i~yv~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~l 160 (1065)
.++||+|+++++ +.||+|||.|+... ...+.+.++++... ..+ ...
T Consensus 93 ~i~~v~Q~~~lf-~~Ti~eNi~~g~~~----~~~~~~~~al~~~~--------------------------l~~---~i~ 138 (255)
T d2hyda1 93 QIGLVQQDNILF-SDTVKENILLGRPT----ATDEEVVEAAKMAN--------------------------AHD---FIM 138 (255)
T ss_dssp TEEEECSSCCCC-SSBHHHHHGGGCSS----CCHHHHHHHHHHTT--------------------------CHH---HHH
T ss_pred EEEEEECCCCCC-CCCHHHHHHCCCCC----CCHHHHHHHHHHHC--------------------------CHH---HHH
T ss_conf 145651015689-98799998515867----99999999999969--------------------------799---997
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 98543444336865544760013467999998469808787379878795989999999999876079889999537964
Q 001507 161 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 161 gL~~~~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~ 240 (1065)
.|+++.||.+|+.+. +||||||||++||||++.+|+|++||||||+||+.++..+++.++.+.+ ++|+|+ ++|...
T Consensus 139 ~lp~gl~t~i~~~g~-~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~-itH~~~ 214 (255)
T d2hyda1 139 NLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLS 214 (255)
T ss_dssp TSTTGGGCBCCGGGT-TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGG
T ss_pred HCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHH
T ss_conf 362420103338889-8499999999999998559989998376544797799999999998753--888999-968999
Q ss_pred HHHHHCCCEEEECCCCEEEECCCCHHHH
Q ss_conf 7994114089952890778858000899
Q 001507 241 EAYELFDDVILLSEGQIVYQGPRVSVLD 268 (1065)
Q Consensus 241 ~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 268 (1065)
....+|+|++|++|+++..|++.+++.
T Consensus 215 -~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 215 -TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp -GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred -HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf -998599999998999999889999986
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.9e-41 Score=287.93 Aligned_cols=200 Identities=21% Similarity=0.337 Sum_probs=158.9
Q ss_pred CCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 32101337337883866999946999996899989946969997145899988935888889841788754345688899
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~~~~i~yv~Q~d~l~~~lT 96 (1065)
...++|+|+|+.+++||+++|+||||||||||+++|+|.+.|+ +|.|.++| .++||+|.+++++. |
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-t 112 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMPG-T 112 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCSE-E
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCCC-E
T ss_conf 9976773759998599999999899982999999995797478---82899999----------99998164302676-0
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89999998541498886124379889988618999912578986531168850268999999919854344433686554
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 VrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~~~dT~VG~~~~~ 176 (1065)
|+|||.|+.... ..++..+.+.+ +.......+.+..++.+|+.+.
T Consensus 113 v~eni~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~i~~l~~~~~~~~~~~~~- 157 (281)
T d1r0wa_ 113 IKENIIFGVSYD--EYRYKSVVKAC--------------------------------QLQQDITKFAEQDNTVLGEGGV- 157 (281)
T ss_dssp HHHHHTTTSCCC--HHHHHHHHHHT--------------------------------TCHHHHTTSTTGGGCEECTTCT-
T ss_pred EECCCCCCCCCC--CHHHHHHHHHH--------------------------------HHHHHHHHCHHHHHHHHHHHCC-
T ss_conf 321420333456--05799999997--------------------------------7699998461233235555423-
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEECCCC
Q ss_conf 47600134679999984698087873798787959899999999998760798899995379647994114089952890
Q 001507 177 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 256 (1065)
Q Consensus 177 ~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I~iL~~G~ 256 (1065)
+|||||||||+||||++.+|+|++||||||+||+.++..+++.+..... .++|+|+ ++|.. +....+|+|++|++|+
T Consensus 158 ~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~-itH~~-~~l~~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRIL-VTSKM-EHLRKADKILILHQGS 234 (281)
T ss_dssp TSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEE-ECSCH-HHHHTCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECHH-HHHHHCCEEEEEECCE
T ss_conf 7799999999999999869635133385544898999999999998862-8999999-92528-9998599999998999
Q ss_pred EEEECCCCHHHH
Q ss_conf 778858000899
Q 001507 257 IVYQGPRVSVLD 268 (1065)
Q Consensus 257 iv~~G~~~~l~~ 268 (1065)
++++|++.++..
T Consensus 235 i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 235 SYFYGTFSELQS 246 (281)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHC
T ss_conf 999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.2e-39 Score=277.15 Aligned_cols=195 Identities=24% Similarity=0.374 Sum_probs=163.8
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 6863114687488699999599972899999997899997168999997931890---0123538897379989999989
Q 001507 714 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 790 (1065)
Q Consensus 714 ~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~ltv 790 (1065)
..|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...+...+|++|+.......++
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 15558888994898999998999809999999948879---955999999999869989998640245121357744209
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCCEEE
Q ss_conf 999999866039999879999999999999908976336732489888779999999999999972-------9981223
Q 001507 791 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFM 863 (1065)
Q Consensus 791 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~-------~p~il~l 863 (1065)
.+.+.+...- ..+.+.++++++.+++.+..+..+ ..||||||||++||++|+. +|++++|
T Consensus 90 ~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llll 156 (231)
T d1l7vc_ 90 WHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 156 (231)
T ss_dssp HHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHCCCH--------HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 8876410014--------668999999998659876767684-----456998899999999998517133899889997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 189999999999999999999984896899992588588997439199993496999917999
Q 001507 864 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 926 (1065)
Q Consensus 864 DEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~ 926 (1065)
||||+|||+.++..+.+.+++++++|.|||+++|+++ ++...+|++++|. +|++++.|++.
T Consensus 157 DEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 157 DEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp SSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 1877778989999999999999867999999967799-9999799999997-99899988999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-38 Score=270.10 Aligned_cols=198 Identities=25% Similarity=0.357 Sum_probs=166.0
Q ss_pred ECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCC
Q ss_conf 01337337883866999946999996899989946969997145899988935888889---841788754345688899
Q 001507 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 96 (1065)
Q Consensus 20 ~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~---~~~i~yv~Q~d~l~~~lT 96 (1065)
..|+++|+.+++||+++|+||||||||||+++|+|.. +. +|+|.++|.++..... ....+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 1555888899489899999899980999999994887-99---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 89999998541498886124379889988618999912578986531168850268999999919854344433686554
Q 001507 97 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 176 (1065)
Q Consensus 97 VrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~~~dT~VG~~~~~ 176 (1065)
+.+++.++..-+ ...+.++++++.++|.+..+..+ .
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~-----~ 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRST-----N 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBG-----G
T ss_pred HHHHHHHCCCHH---------------------------------------HHHHHHHHHHHHCCCHHHHCCCH-----H
T ss_conf 988764100146---------------------------------------68999999998659876767684-----4
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCE
Q ss_conf 476001346799999846-------9808787379878795989999999999876079889999537964799411408
Q 001507 177 GISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 249 (1065)
Q Consensus 177 ~LSGGQKrRlsIA~al~~-------~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I 249 (1065)
.||||||||++||++++. +|+|++|||||+|||..++..+++.++++.. . +++|+.++|...++...+|++
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986-7-999999967799999979999
Q ss_pred EEECCCCEEEECCCCHHH
Q ss_conf 995289077885800089
Q 001507 250 ILLSEGQIVYQGPRVSVL 267 (1065)
Q Consensus 250 ~iL~~G~iv~~G~~~~l~ 267 (1065)
++|++|++++.|++.++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.5e-37 Score=262.69 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=148.3
Q ss_pred EEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 26863114687488699999599972899999997899997168999997931890012353889737998999998999
Q 001507 713 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 792 (1065)
Q Consensus 713 ~~~l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e 792 (1065)
+++|+|+|+.+++|+++||+||||||||||+++|+|..+ |.+|+|.+||.+... .+..++|+||+..++..+|+.|
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHH
T ss_conf 928842088985998999999999719999999966205--677889999896267--3670899950135788828999
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH
Q ss_conf 99998660399998799999999999999089763367324898887799999999999999729981223189999999
Q 001507 793 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 872 (1065)
Q Consensus 793 ~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~ 872 (1065)
++.+.+.++.... .. ..+.+.++.+++.+.... + ..||||||||++||++++.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~-~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~ 158 (200)
T d1sgwa_ 90 YLKAVASLYGVKV-NK----NEIMDALESVEVLDLKKK-L-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 158 (200)
T ss_dssp HHHHHHHHTTCCC-CH----HHHHHHHHHTTCCCTTSB-G-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred HHHHHHHHCCCCC-CH----HHHHHHHHHCCCCCCCCC-C-----CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCH
T ss_conf 9999997548863-79----999999987488563012-6-----86897188889999988649989998686201699
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 9999999999999848968999925885889974391999934
Q 001507 873 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 915 (1065)
Q Consensus 873 ~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~ 915 (1065)
.++..+++.++++.+++.++|+++|+. . ..||.+.+|.+
T Consensus 159 ~~~~~i~~~l~~~~~~~~~~ii~~~~~-l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 159 DSKHKVLKSILEILKEKGIVIISSREE-L---SYCDVNENLHK 197 (200)
T ss_dssp TTHHHHHHHHHHHHHHHSEEEEEESSC-C---TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECH-H---HHCCHHHHEEE
T ss_conf 999999999999986799999999162-5---44161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.5e-36 Score=257.70 Aligned_cols=193 Identities=18% Similarity=0.243 Sum_probs=155.3
Q ss_pred HHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 88841504775321013373378838669999469999968999899469699971458999889358888898417887
Q 001507 6 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYV 85 (1065)
Q Consensus 6 ~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~~~~i~yv 85 (1065)
++|+++.++ +++|+|+|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+||.++.. .+..++|+
T Consensus 5 v~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~ 75 (200)
T d1sgwa_ 5 IRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFL 75 (200)
T ss_dssp EEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEE
T ss_pred EEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHH--HCCCEEEE
T ss_conf 998999939----92884208898599899999999971999999996620567---7889999896267--36708999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 54345688899899999985414988861243798899886189999125789865311688502689999999198543
Q 001507 86 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 165 (1065)
Q Consensus 86 ~Q~d~l~~~lTVrE~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~ve~il~~lgL~~~ 165 (1065)
+|+..+...+|++|++.+.+.+.+.... ...+...++.+++.+.
T Consensus 76 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~ 119 (200)
T d1sgwa_ 76 PEEIIVPRKISVEDYLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDL 119 (200)
T ss_dssp CSSCCCCTTSBHHHHHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCT
T ss_pred EECCCCCCCCCHHHHHHHHHHHCCCCCC------------------------------------HHHHHHHHHHCCCCCC
T ss_conf 5013578882899999999975488637------------------------------------9999999987488563
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
Q ss_conf 44433686554476001346799999846980878737987879598999999999987607988999953796479941
Q 001507 166 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 166 ~dT~VG~~~~~~LSGGQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~l 245 (1065)
. ..+ ..||||||||++||+|++.+|++++|||||+|||..++..+++.+++..+. ++++|++.||.. .+
T Consensus 120 ~-~~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~ 188 (200)
T d1sgwa_ 120 K-KKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SY 188 (200)
T ss_dssp T-SBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TT
T ss_pred C-CCC-----CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HH
T ss_conf 0-126-----868971888899999886499899986862016999999999999999867-999999991625----44
Q ss_pred CCCEEEECC
Q ss_conf 140899528
Q 001507 246 FDDVILLSE 254 (1065)
Q Consensus 246 fD~I~iL~~ 254 (1065)
+|.+.+|.+
T Consensus 189 ~D~~~~l~~ 197 (200)
T d1sgwa_ 189 CDVNENLHK 197 (200)
T ss_dssp SSEEEEGGG
T ss_pred CCHHHHEEE
T ss_conf 161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=9.2e-14 Score=106.03 Aligned_cols=27 Identities=19% Similarity=0.059 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 760013467999998469808787379
Q 001507 178 ISGGQKKRLTTGELLVGPARVLFMDEI 204 (1065)
Q Consensus 178 LSGGQKrRlsIA~al~~~~~IllLDEP 204 (1065)
+++|+++|.++++++..+|+++++|||
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~ 108 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEI 108 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 532013789999997409974230277
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=1.1e-13 Score=105.53 Aligned_cols=161 Identities=15% Similarity=0.081 Sum_probs=94.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999599972899999997899997168999997931890012353889737998999998999999986603999987
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 807 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~f~~~~~~~~~~~ 807 (1065)
+++|+||||||||||+++++|... +..|.+.+.+.+......+ .++..+......... +..........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIF------SSKFFTSKKLV- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC------C--CEEEEEETTCCEEEE------EETTCCCSSEE-
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC--CCCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHH------HHHHHHHHHHH-
T ss_conf 899998999389999999981488--8864699877132888876--531123366777887------54113455443-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999089763367324898887799999999999999729981223189999999999999999999984
Q 001507 808 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 887 (1065)
Q Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lS~Gqr~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~ 887 (1065)
+..........+++|++++.++++++..+|+++++|||+... .........+.++.+
T Consensus 71 ---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 71 ---------------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMH 127 (178)
T ss_dssp ---------------------TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHT
T ss_pred ---------------------HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--HHHHHHHHHHHHHHC
T ss_conf ---------------------023037625665320137899999974099742302777310--045799999998750
Q ss_pred -CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf -89689999258858899743919999349699991799
Q 001507 888 -TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 925 (1065)
Q Consensus 888 -~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~ 925 (1065)
.+.++++++|+... ...+|++..+. +|+++.-++.
T Consensus 128 ~~~~~il~~~h~~~~--~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRDV--HPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSCC--SHHHHHHHTCT-TCEEEECCTT
T ss_pred CCCCEEEEEECCHHH--HHHHCEEEEEE-CCEEEEECCC
T ss_conf 579789999744778--98636599871-9999998996
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=8.1e-09 Score=72.80 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 87799999999999999----72998122318999999999999999999998489689999258858899743919999
Q 001507 838 NGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 838 ~~lS~Gqr~r~~ia~~l----~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
..+|.|||+...++..+ ..+|.+++.|||-++|+|.....+.+.|+.... +.-||+|+|.|.+ +..+|++..+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~--~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIV--MEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTG--GGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHHCCCEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-8879999898899--9732428999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=5.7e-08 Score=67.12 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 54476001346799999----84698087873798787959899999999998760798899995379647994114089
Q 001507 175 LKGISGGQKKRLTTGEL----LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250 (1065)
Q Consensus 175 ~~~LSGGQKrRlsIA~a----l~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I~ 250 (1065)
...+|+|||..+.++.. ...+++++++|||-++|++.....+.+.|+..+. +.-+|+ ++|++++++.+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvii--tTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIV--ITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEE--ECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEE--EECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--887999--989889997324289
Q ss_pred E--ECCC
Q ss_conf 9--5289
Q 001507 251 L--LSEG 255 (1065)
Q Consensus 251 i--L~~G 255 (1065)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=1.2e-08 Score=71.67 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 87799999999999999----72998122318999999999999999999998489689999258858899743919999
Q 001507 838 NGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 913 (1065)
Q Consensus 838 ~~lS~Gqr~r~~ia~~l----~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l 913 (1065)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+.-+|+|||+|. ++..+|..+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 3322304799999999999547999779996887778999999999999997289988999958789--99736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=6.2e-07 Score=60.13 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHH--HH--HCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 5447600134679999--98--4698087873798787959899999999998760798899995379647994114089
Q 001507 175 LKGISGGQKKRLTTGE--LL--VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 250 (1065)
Q Consensus 175 ~~~LSGGQKrRlsIA~--al--~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~lfD~I~ 250 (1065)
...+|||||.++++|- |+ +.++++++||||+++||...+..+.+.|++.+. .+.-.|+ ++|.+++.+.+|+++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~--iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIV--ISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEE--ECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEE--EECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728-9988999--958789997366179
Q ss_pred EE
Q ss_conf 95
Q 001507 251 LL 252 (1065)
Q Consensus 251 iL 252 (1065)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.87 E-value=0.00031 Score=41.98 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 9999999999729981223189999999999999-99999998489689999258858
Q 001507 845 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV-MRTVRNIVNTGRTIVCTIHQPSI 901 (1065)
Q Consensus 845 r~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i-~~~l~~~~~~~~tvi~~~H~~~~ 901 (1065)
-+++.-....+.+..++++||...|-++.....+ ..+++.+.+.+..+++++|...+
T Consensus 102 l~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL 159 (224)
T d1ewqa2 102 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 159 (224)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 7889877502897727855454568623320025888888886237613786520233
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.81 E-value=0.00013 Score=44.53 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
Q ss_conf 01346799999846980878737987879598999999999987607988999953796479941
Q 001507 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 245 (1065)
Q Consensus 181 GQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~~~l 245 (1065)
.|-+|++-.....+...++++||..+|=++..+..+...+-+.-...+..++++. |+ .++..+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tT-H~-~eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFAT-HY-FELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEC-CC-HHHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEE-EC-HHHHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865-20-233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=0.0002 Score=43.21 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCCHH
Q ss_conf 999999999972998122318999999999999999-99999848-96899992588588
Q 001507 845 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR-TVRNIVNT-GRTIVCTIHQPSID 902 (1065)
Q Consensus 845 r~r~~ia~~l~~~p~il~lDEptsglD~~~~~~i~~-~l~~~~~~-~~tvi~~~H~~~~~ 902 (1065)
-+++.-......+.+++++||+-.|-++.....+.. .++.+... +..+++++|.....
T Consensus 108 ~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 108 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 999999997454660885322235877456667898764543204544289852468776
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.00042 Score=41.12 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEEEC
Q ss_conf 013467999998469808787379878795989999999-99987607988999953
Q 001507 181 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLL 236 (1065)
Q Consensus 181 GQKrRlsIA~al~~~~~IllLDEPTSgLDs~s~~~i~~~-L~~~~~~~~~t~Ii~i~ 236 (1065)
.|-+|++-......+..++++||+.+|=++..+..+... +..+....+..++++.|
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH 162 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATH 162 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 999999999974546608853222358774566678987645432045442898524
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.56 E-value=0.0014 Score=37.62 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=22.6
Q ss_pred EEEEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 631146874886999995999728999999978
Q 001507 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 716 l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
|+.+.+-+.||+++.|.|++|+||||++.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 888746978980899994799979999999997
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.40 E-value=6.7e-05 Score=46.46 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=32.5
Q ss_pred CCEECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 321013373378838669999469999968999899469
Q 001507 17 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 17 ~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
+..+-|+++.+-+++|++++|.|++|+|||||+.-++-.
T Consensus 20 TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 20 SGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp CSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 883668887469789808999947999799999999972
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.00025 Score=42.68 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=26.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 886999995999728999999978999971689999
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 760 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~ 760 (1065)
+|+..+++|+||+|||||+|.|.+... .-.|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHCCCCC
T ss_conf 698089978898778888773053555--0106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0065 Score=33.12 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=23.4
Q ss_pred HHCCCCEEECCCCC-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 72998122318999-----99999999999999999848-9689999258
Q 001507 855 VANPSIVFMDEPTS-----GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQ 898 (1065)
Q Consensus 855 ~~~p~il~lDEpts-----glD~~~~~~i~~~l~~~~~~-~~tvi~~~H~ 898 (1065)
..+|+++++|--+. --|......++..++.++.. +++|+++.|.
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf 26765896281354226652322568999988777764479754013100
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.0002 Score=43.23 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=27.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 8669999469999968999899469699971458999
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 67 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~ 67 (1065)
+|+.++++|+||.|||||+|.|.+...- ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH---HCCCCC
T ss_conf 6980899788987788887730535550---106842
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.93 E-value=0.0066 Score=33.09 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999728999999978
Q 001507 729 TALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g 748 (1065)
+-+.||.|+|||++.++++.
T Consensus 43 vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99889699988999999862
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.91 E-value=0.00039 Score=41.33 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=12.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 869999959997289999999789
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
|+++.|.||+||||||+.+.|+.+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 859999889999889999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.87 E-value=0.0045 Score=34.21 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=14.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 687488699999599972899999997
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~ 747 (1065)
|-+++|..+.|.|++|+|||+|..-++
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 898698499999189999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.80 E-value=0.00031 Score=42.03 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66999946999996899989946969
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
|++.+|+|||||||||+++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.012 Score=31.37 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=31.3
Q ss_pred HHHCCCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 98469808787379878-----795989999999999876079889999537964
Q 001507 191 LLVGPARVLFMDEISNG-----LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 240 (1065)
Q Consensus 191 al~~~~~IllLDEPTSg-----LDs~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~ 240 (1065)
....+++++++|--+.- -|......++..|+.++...+.++++ +||...
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~-v~H~~K 181 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASK 181 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEH-HHHCCC
T ss_conf 752676589628135422665232256899998877776447975401-310055
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00045 Score=40.93 Aligned_cols=24 Identities=38% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.00061 Score=40.04 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 86999995999728999999978999
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
|.++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.66 E-value=0.00014 Score=44.31 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 886999995999728999999978999971689999
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 760 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~ 760 (1065)
.|..+.++|+||+|||||+|.|.+... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.00046 Score=40.85 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=14.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+.+.+|+|++||||||+.+.|+.++
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87189998999989899999999986
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.00023 Score=42.87 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=27.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 8669999469999968999899469699971458999
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 67 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~ 67 (1065)
+|+.++++|+||.|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~---~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH---HHHCCCC
T ss_conf 356499987787348789875151767---6403555
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00078 Score=39.32 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=18.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.|.+.+|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.43 E-value=0.0047 Score=34.09 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=25.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 68748869999959997289999999789999
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG 752 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~~ 752 (1065)
..++.+.-+.|.|++||||||++++|.+..+.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99983788899940356625789998653014
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.40 E-value=0.0007 Score=39.62 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=23.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 69999469999968999899469699971458999889
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 70 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG 70 (1065)
++..|+|++|||||||++.|..++......-|.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.40 E-value=0.0014 Score=37.51 Aligned_cols=28 Identities=43% Similarity=0.523 Sum_probs=25.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3866999946999996899989946969
Q 001507 30 RPSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 30 ~~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..|++++|.|++||||||+.+.|+.+++
T Consensus 2 ~~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 2 LGGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9985999988999988999999999959
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0012 Score=38.17 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++|+|++|||||||++.|...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0014 Score=37.50 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88699999599972899999997899
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.|.++.|+||||+||+||.+.|....
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.26 E-value=0.0015 Score=37.36 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=12.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
+|.++.|+|++||||||+.+.|+-++
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97699988999999999999999998
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=9.3e-05 Score=45.52 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=21.1
Q ss_pred CCCCEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 337337883866999946999996899989946
Q 001507 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 22 L~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G 54 (1065)
.++.++.+.+| +|+|+|+|||||||+|.+|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.0015 Score=37.30 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++|+|++|+|||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=6.2e-05 Score=46.71 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=26.1
Q ss_pred EEEEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 631146874886999995999728999999978
Q 001507 716 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 716 l~~vs~~~~~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.++.++.+.+| ++.|+|+|||||||++++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.17 E-value=0.0016 Score=37.15 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++|+||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.16 E-value=0.0014 Score=37.70 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=18.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 386699994699999689998994696
Q 001507 30 RPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 30 ~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
++|-..+|.||+||||||+.+.|+-++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.13 E-value=0.0014 Score=37.52 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=13.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699994699999689998994696
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+.+|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0022 Score=36.27 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=12.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 87488699999599972899999997
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 722 ~~~~g~~~ai~G~sGaGKsTll~~l~ 747 (1065)
-+++|+++.|.||+|+|||||..-++
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la 44 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLA 44 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 98599799999589999999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.10 E-value=0.0015 Score=37.37 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=14.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6699994699999689998994696
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++++|.|++||||||+.+.|+.++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.06 E-value=0.0022 Score=36.23 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999946999996899989946
Q 001507 33 RLTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.01 E-value=0.0013 Score=37.75 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=10.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
.++|.||+|+|||||.+.|+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989999989999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0026 Score=35.84 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488699999599972899999997899
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+.+.++.|+||+||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.98 E-value=0.0019 Score=36.78 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++|+|++|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.90 E-value=0.0027 Score=35.63 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECC
Q ss_conf 6999995999728999999978999-971689999979
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISG 763 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~~-~~~~~G~i~i~g 763 (1065)
.+++|+|++|||||||++.|..... .|..-|.|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.88 E-value=0.0031 Score=35.27 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488699999599972899999997899
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+.|.++.|+|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.88 E-value=0.037 Score=28.05 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=18.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHH
Q ss_conf 468748869999959997289999999
Q 001507 720 TGAFRPGVLTALVGVSGAGKTTLMDVL 746 (1065)
Q Consensus 720 s~~~~~g~~~ai~G~sGaGKsTll~~l 746 (1065)
.|-+++|+++-|.|++|+|||+|..-+
T Consensus 20 ~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 20 HGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 689969839999947999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.86 E-value=0.0019 Score=36.69 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=20.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 386699994699999689998994696
Q 001507 30 RPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 30 ~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
++|-..+++||+||||||..+.|+-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.83 E-value=0.0031 Score=35.23 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66999946999996899989946969
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-+..+|.|++|||||||.+.|+..++
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 32899989999989999999999849
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0024 Score=36.04 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66999946999996899989946969
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-.+.+|+||+||||||+.+.|+..++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 72899989999998999999999859
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.82 E-value=0.0028 Score=35.54 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..+++.||+|||||||.++|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.79 E-value=0.0016 Score=37.27 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=21.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8386699994699999689998994696
Q 001507 29 IRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 29 i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
++.+.+..|+||+||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.78 E-value=0.0018 Score=36.90 Aligned_cols=23 Identities=52% Similarity=0.668 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+|+|++||||||+.+.|+-+++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.77 E-value=0.041 Score=27.75 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=28.2
Q ss_pred CEECCCCC-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 21013373-3788386699994699999689998994
Q 001507 18 KLTILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 18 ~~~iL~~v-s~~i~~Gelt~IlG~sGSGKSTLL~~L~ 53 (1065)
..+-|+++ .+-+++|+++.|.|++|+|||+|+.-++
T Consensus 11 Gi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 11 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9377988556899698399999479999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.74 E-value=0.0032 Score=35.15 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699994699999689998994696
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+++|+||+||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.73 E-value=0.0034 Score=35.05 Aligned_cols=21 Identities=38% Similarity=0.320 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999946999996899989946
Q 001507 34 LTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G 54 (1065)
+++|-|++|||||||.+.|.-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789887899999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.73 E-value=0.0039 Score=34.64 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488699999599972899999997899
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
++|-.+.|.||+||||||+.+.|+...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0035 Score=34.93 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699994699999689998994696
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
++++|+||||+||+||++.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.65 E-value=0.0033 Score=35.08 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
+++|.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.64 E-value=0.004 Score=34.52 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999469999968999899469699
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.63 E-value=0.0039 Score=34.58 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-++|+|.+|+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.62 E-value=0.0038 Score=34.65 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++.|.|.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0019 Score=36.78 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999469999968999899469699
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
.+.|.||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999889997199999999999997
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.002 Score=36.52 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8869999959997289999999789
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.|-++.|+|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.56 E-value=0.0057 Score=33.50 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+|++|.+|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.55 E-value=0.0046 Score=34.10 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++|+|++|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0048 Score=34.01 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=13.2
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 87488699999599972899999997
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 722 ~~~~g~~~ai~G~sGaGKsTll~~l~ 747 (1065)
-+++|+++-|.||+|+|||||..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699699998389998899999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.51 E-value=0.0023 Score=36.16 Aligned_cols=20 Identities=40% Similarity=0.722 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999728999999978
Q 001507 729 TALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g 748 (1065)
+||+|++++|||||+|.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.0042 Score=34.41 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
-++||-|++|||||||.+.|...
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0055 Score=33.59 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
=++||.|++||||||+.+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0057 Score=33.50 Aligned_cols=22 Identities=50% Similarity=0.825 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++++|++++|||||++.|+|.
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899999899999999688
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0046 Score=34.10 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
++|+|||||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.0055 Score=33.61 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|++|+|||||++.|+|
T Consensus 3 V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999989999999967
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0044 Score=34.27 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995999728999999978999
Q 001507 729 TALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
+.|+|||||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0034 Score=35.03 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..+++||+||||||+.+.|+-+++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.43 E-value=0.0049 Score=33.97 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
-++++|++|+|||||+++|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0056 Score=33.56 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999728999999978999
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
..+.|+||||+||+||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.40 E-value=0.0048 Score=34.02 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
.++|+|++++|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.38 E-value=0.0055 Score=33.63 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=11.1
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 699999599972899999997
Q 001507 727 VLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~ 747 (1065)
+++-++|++||||||+.+-++
T Consensus 15 ~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999998999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.37 E-value=0.0049 Score=33.94 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+|+||||||||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.36 E-value=0.0051 Score=33.85 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=13.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 687488699999599972899999997
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~ 747 (1065)
|-+++|+++-|.|++|+|||++..-++
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 986288599999179999899999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.36 E-value=0.0072 Score=32.81 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=17.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 687488699999599972899999997
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~ 747 (1065)
|-+++|+++-|.||+|+|||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.36 E-value=0.0065 Score=33.10 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999728999999978
Q 001507 727 VLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g 748 (1065)
+++.|.|++||||||+.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0036 Score=34.84 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++|+||+||||||..+.|+-.++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999979999998999999999869
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.33 E-value=0.0039 Score=34.57 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEECCCCHHHHHHCCEEE
Q ss_conf 99999729981223189999999999999999999984896-899992588588997439199
Q 001507 850 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR-TIVCTIHQPSIDIFESFDELL 911 (1065)
Q Consensus 850 ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~-tvi~~~H~~~~~~~~~~d~~~ 911 (1065)
+-.+|=.+|..+++.|--.. ++. ...+.+ ..|. -++.|.|-.+. ...++++.
T Consensus 228 l~~~lR~~pd~iivgEiR~~---ea~-~~l~a~----~tGh~g~~tT~Ha~s~--~~a~~Rl~ 280 (323)
T d1g6oa_ 228 LKSCLRMRPDRIILGELRSS---EAY-DFYNVL----CSGHKGTLTTLHAGSS--EEAFIRLA 280 (323)
T ss_dssp HHHHTTSCCSEEEESCCCST---HHH-HHHHHH----HTTCSCEEEEECCSSH--HHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCH---HHH-HHHHHH----HHCCCCEEEEECCCCH--HHHHHHHH
T ss_conf 99974349985457866746---599-999999----8169857998787999--99999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.0042 Score=34.41 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 86999995999728999999978
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.-.+||.||.|||||||++.|..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 32897438999989999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0061 Score=33.29 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++|.|++||||||+.+.|+..++
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.29 E-value=0.0069 Score=32.94 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 86999995999728999999978999
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.007 Score=32.88 Aligned_cols=20 Identities=45% Similarity=0.733 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999728999999978
Q 001507 729 TALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g 748 (1065)
++++|.+|+|||||+|.|+|
T Consensus 8 I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99997999989999999958
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.28 E-value=0.005 Score=33.91 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-++|+|++|+|||||+|.|+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.27 E-value=0.0065 Score=33.13 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++++|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.27 E-value=0.0071 Score=32.85 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.++|+|.+|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.0053 Score=33.73 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++|+|++|||||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.20 E-value=0.0071 Score=32.86 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++|+|++|+|||||++.|+|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.0064 Score=33.15 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959997289999999789
Q 001507 729 TALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+.|+|||||||+||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.19 E-value=0.0053 Score=33.69 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.17 E-value=0.0059 Score=33.39 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++|+|.+|+|||||+|.|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.16 E-value=0.0077 Score=32.63 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+.+++|.+||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.16 E-value=0.0043 Score=34.35 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|++++|||||++.|+|
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999989999999968
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.0052 Score=33.77 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
++||-|++||||||+.+.|+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.14 E-value=0.0064 Score=33.14 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+||+|.+|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.12 E-value=0.0083 Score=32.38 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.11 E-value=0.0042 Score=34.37 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..+++|++||||||+.+.|+-.++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.0067 Score=33.03 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+|+||+||||||+.+.|+-.++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.0084 Score=32.35 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
.++++|.+++|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.02 E-value=0.0047 Score=34.05 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+|+|++||||||+.+.|+..++
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.01 E-value=0.0077 Score=32.63 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+.|+||+||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0067 Score=33.01 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=27.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3788386699994699999689998994696
Q 001507 26 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 26 s~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+-+++|+++.|.||+|||||||+.-++...
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 5898599799999589999999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.008 Score=32.53 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+.|.||+|+|||||++.++...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899971999999999999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.99 E-value=0.0045 Score=34.20 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0061 Score=33.28 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 866999946999996899989946969
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.|.++.+.|++||||||+.+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.92 E-value=0.0056 Score=33.56 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+.+|.||+||||||..+.|+-.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.89 E-value=0.011 Score=31.66 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 869999959997289999999789
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
..++.|+||.||||||+.+.|+..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 948999899999889999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.89 E-value=0.0056 Score=33.54 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999469999968999899469699
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
++.+|.|++||||||+.+.|+.+++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.0081 Score=32.49 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=16.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 687488699999599972899999997
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~ 747 (1065)
|-+++|+++.|.|++|+|||++...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 997689799998899887889999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.88 E-value=0.0053 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..+|+||+||||||+.+.|+-.++
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.88 E-value=0.01 Score=31.80 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+++|.|+.||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.87 E-value=0.0064 Score=33.18 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
..+|+||+||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.87 E-value=0.0072 Score=32.81 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++++|++|+|||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999678
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.011 Score=31.66 Aligned_cols=25 Identities=40% Similarity=0.769 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8699999599972899999997899
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
|=.++++|+.++|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.80 E-value=0.0056 Score=33.54 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
++++|++||||||+.+.|+.+++
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.75 E-value=0.0091 Score=32.13 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
+++|+|++.||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0067 Score=33.01 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+.+|.||+||||+|+.+.|+.+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.011 Score=31.65 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1337337883866999946999996899989946969
Q 001507 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 21 iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+|+.+.-.-...-.++|.|++|||||||++.|...+.
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9998653169832897438999989999999999997
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.71 E-value=0.011 Score=31.70 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf 8699999599972899999997899-997168999997
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYIS 762 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~-~~~~~~G~i~i~ 762 (1065)
.-.+||.||-|||||||++.|.... ..+..-|-|.+|
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 15986117998889999999999876368751344346
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.69 E-value=0.0068 Score=32.99 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599972899999997899
Q 001507 729 TALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+||+|++++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.61 E-value=0.011 Score=31.66 Aligned_cols=23 Identities=57% Similarity=0.927 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+|+||+||||||+.+.|+-.++
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.012 Score=31.31 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=32.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 69999469999968999899469699971458999889358888898417887543456888
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 94 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~~~~i~yv~Q~d~l~~~ 94 (1065)
=+++|.|++||||||+.+.|...+... .....+..+++++.+.++
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 899996899998768999999997304-----------------689965999521568984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.56 E-value=0.011 Score=31.71 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|++.||||||++.|++
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.011 Score=31.69 Aligned_cols=21 Identities=48% Similarity=0.607 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
.+++|++++|||||++.|.+.
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.54 E-value=0.012 Score=31.35 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+||+|+..||||||++.|++..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.0075 Score=32.70 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
..+++||+||||||+.+.|+-++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.0098 Score=31.91 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+-+.||+|+||||+.++++...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.49 E-value=0.0082 Score=32.43 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-+++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.011 Score=31.68 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+++||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.0091 Score=32.12 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 866999946999996899989946969
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+++.+|-|+.||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.0059 Score=33.39 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.39 E-value=0.014 Score=30.93 Aligned_cols=23 Identities=43% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+.|+||+||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.39 E-value=0.016 Score=30.44 Aligned_cols=26 Identities=42% Similarity=0.502 Sum_probs=22.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48869999959997289999999789
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++|-.+.|+||.||||||..+.|+..
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.38 E-value=0.017 Score=30.38 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=20.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48869999959997289999999789
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+.|.++-+.|.+||||||+.+.|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.38 E-value=0.011 Score=31.53 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.011 Score=31.50 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.37 E-value=0.012 Score=31.24 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
++.++|++|+|||||++.+.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.018 Score=30.21 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8699999599972899999997899
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-.++.|+||.||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.30 E-value=0.013 Score=31.18 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.-.+++||+|+|||.|.++|+..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.28 E-value=0.013 Score=31.03 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.25 E-value=0.013 Score=31.15 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=18.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699994699999689998994696
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
-+.+|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.22 E-value=0.018 Score=30.14 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+++|++.+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.02 Score=29.90 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=29.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECCC
Q ss_conf 6874886999995999728999999978999-9716899999793
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 764 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g~~~-~~~~~G~i~i~g~ 764 (1065)
|-+++|.++-+.||+|+|||||.-.++.... .+ .-.+++|..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g--~~~vyidtE 91 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAE 91 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESS
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEECCC
T ss_conf 9966735899805777478999999999987089--879998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.20 E-value=0.017 Score=30.25 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+||.||+||||||.-+.|+..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997899987989999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.19 E-value=0.096 Score=25.27 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=12.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 886999995999728999999978
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.|.-+.+.|+||+|||||...|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999981899998999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.17 E-value=0.096 Score=25.27 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=11.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 886999995999728999999978
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.|.-+.++|+||+||||+...|..
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 999999980899998999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.13 E-value=0.018 Score=30.22 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++.|.+.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999999998999999998089
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.13 E-value=0.017 Score=30.38 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|+.|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.11 E-value=0.017 Score=30.28 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599972899999997899
Q 001507 729 TALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+.|+|++||||||+.+.|+...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.09 E-value=0.013 Score=31.16 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCC----------CHHHHHHHHHHHHHH---H-HCCCEEEEEECCCCHHHHHHCCE
Q ss_conf 999999999997299812231899999----------999999999999999---8-48968999925885889974391
Q 001507 844 QRKRLTIAVELVANPSIVFMDEPTSGL----------DARAAAIVMRTVRNI---V-NTGRTIVCTIHQPSIDIFESFDE 909 (1065)
Q Consensus 844 qr~r~~ia~~l~~~p~il~lDEptsgl----------D~~~~~~i~~~l~~~---~-~~~~tvi~~~H~~~~~~~~~~d~ 909 (1065)
++-+-.+..+-...|.++++||--.-. .....+.+...+..+ . +.+.-||.|+++|.. .|.
T Consensus 87 ~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld~ 161 (265)
T d1r7ra3 87 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----IDP 161 (265)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TSC
T ss_pred HHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CCH
T ss_conf 999999999986398435687546324557876788737999999999999628677799899991799222-----799
Q ss_pred EEEEEC--CCEEEEECCCCC
Q ss_conf 999934--969999179998
Q 001507 910 LLFMKR--GGELIYAGPLGS 927 (1065)
Q Consensus 910 ~~~l~~--gg~~~~~g~~~~ 927 (1065)
-+ +.. =.+.++.++|..
T Consensus 162 al-~r~gRf~~~i~~~~p~~ 180 (265)
T d1r7ra3 162 AI-LRPGRLDQLIYIPLPDE 180 (265)
T ss_dssp GG-GSSTTSEEEEECCCCCC
T ss_pred HH-HCCCCCCEEEEECCHHH
T ss_conf 78-07877647999566078
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.05 E-value=0.015 Score=30.67 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|++|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.05 E-value=0.02 Score=29.85 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.++.++|++|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.02 E-value=0.017 Score=30.28 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959997289999999789
Q 001507 729 TALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+-+.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.013 Score=31.02 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 869999959997289999999789
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
..-+-+.||+|+|||++.++++..
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 886786689988822899999998
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.00 E-value=0.024 Score=29.30 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=33.3
Q ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 999997299812231899999999999999999999848968999925885
Q 001507 850 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900 (1065)
Q Consensus 850 ia~~l~~~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~ 900 (1065)
+..+|=.+|.+++..|.. |..++....++ +..|+.|+.|.|-.+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCSS
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHHHH----HHCCCEEEEEECCCC
T ss_conf 999984138889845768---75999999999----724985899833676
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.016 Score=30.54 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.95 E-value=0.016 Score=30.42 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++|+|+.|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.94 E-value=0.022 Score=29.61 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=15.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 86999995999728999999978
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
+..++++||+|+||||.+-=|+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 77999989999988999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.94 E-value=0.018 Score=30.19 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=9.6
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9995999728999999978
Q 001507 730 ALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 730 ai~G~sGaGKsTll~~l~g 748 (1065)
-+.||.|+||||+.++++.
T Consensus 39 L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 39 LLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9879999738899999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.92 E-value=0.025 Score=29.18 Aligned_cols=27 Identities=33% Similarity=0.414 Sum_probs=23.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 386699994699999689998994696
Q 001507 30 RPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 30 ~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
+.|.+..+.|.|||||||+.+.|.-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 998699998999999899999999887
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.90 E-value=0.024 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488699999599972899999997899
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++-++-+.||+||||||++..+....
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 410548987678777447799986662
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.87 E-value=0.016 Score=30.55 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.|+||.||||||+.+.|+..
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.012 Score=31.21 Aligned_cols=23 Identities=57% Similarity=0.860 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++.||+|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.0097 Score=31.96 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699994699999689998994696
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
--++++|++++|||||+|.|.+.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.83 E-value=0.019 Score=29.93 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=14.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+..++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.83 E-value=0.0091 Score=32.14 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++|.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989997809999999999971
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.81 E-value=0.015 Score=30.72 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-+-+.||.|+|||+|.++++...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.021 Score=29.72 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.|.+.+|-|+.||||||+.+.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 80599998998889999999999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.79 E-value=0.021 Score=29.63 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+.++|++||||||+-+.|+...
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.78 E-value=0.024 Score=29.29 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 33733788386699994699999689998994696
Q 001507 22 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 22 L~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
++.+...-...-.+.|.|++|+|||||+..|...+
T Consensus 41 ~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 41 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99863306981598611799888999999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.76 E-value=0.023 Score=29.41 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++++|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.024 Score=29.25 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.|+||.||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.74 E-value=0.023 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3866999946999996899989946
Q 001507 30 RPSRLTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 30 ~~Gelt~IlG~sGSGKSTLL~~L~G 54 (1065)
+.-++++++|++||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.73 E-value=0.021 Score=29.75 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994699999689998994
Q 001507 34 LTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~ 53 (1065)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.65 E-value=0.021 Score=29.65 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 86999995999728999999978999
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
.-+++++|..|+|||||++.|.+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 57999999999898999999966888
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.63 E-value=0.022 Score=29.58 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995999728999999978999
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
..+.+.||.|+|||||.++|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.025 Score=29.24 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=16.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 886999995999728999999978
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
+..+++++||+|+||||.+-=|+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999988999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.58 E-value=0.024 Score=29.34 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++||.|+.||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.025 Score=29.17 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.|.+.++-|+.||||||+.+.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.56 E-value=0.019 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48869999959997289999999789
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+.+.++.|+||.||||||+.+.|+..
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.52 E-value=0.029 Score=28.72 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-++++|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.48 E-value=0.029 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+..|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.47 E-value=0.024 Score=29.36 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++++|.-+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.086 Score=25.58 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.44 E-value=0.024 Score=29.27 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8699999599972899999997899
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+.-+.++||+|+|||.|.++|+...
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8669998999988889999986213
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.39 E-value=0.027 Score=28.99 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=30.3
Q ss_pred EECCCC-CEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 101337-33788386699994699999689998994696
Q 001507 19 LTILDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 19 ~~iL~~-vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+-|+. +.+-+++|+++.|.|++|+||||+..-++-..
T Consensus 20 ~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 20 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 878997207986288599999179999899999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.37 E-value=0.025 Score=29.24 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.36 E-value=0.006 Score=33.34 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++++|||||++.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.35 E-value=0.048 Score=27.27 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.9
Q ss_pred ECCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 013373378838669999469999968999899469
Q 001507 20 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 20 ~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
..++.....+ .|.=+++.|+||+||||+...|..+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 3178999999-9999999818999989999999985
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.30 E-value=0.028 Score=28.83 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599972899999997899
Q 001507 729 TALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.031 Score=28.54 Aligned_cols=22 Identities=45% Similarity=0.662 Sum_probs=14.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999728999999978
Q 001507 727 VLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.+++++||+|+||||.+-=|+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999998999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.021 Score=29.65 Aligned_cols=36 Identities=33% Similarity=0.407 Sum_probs=28.5
Q ss_pred ECCCCC-EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 013373-378838669999469999968999899469
Q 001507 20 TILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 20 ~iL~~v-s~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
+-|+.+ .|-+++|+++.|.|++|||||||..-++-.
T Consensus 21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 21 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7899631799869969999838999889999999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.24 E-value=0.031 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 866999946999996899989946969
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+.+.+++||+|+||||.+-=|+.++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.22 E-value=0.015 Score=30.70 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.033 Score=28.39 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48869999959997289999999789
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+.|.+++|-|+-||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.14 E-value=0.025 Score=29.14 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8699999599972899999997899
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.-+++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.12 E-value=0.024 Score=29.26 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-+-+.||.|+|||++.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.11 E-value=0.035 Score=28.19 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.|+||.||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.035 Score=28.17 Aligned_cols=24 Identities=50% Similarity=0.791 Sum_probs=15.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-+++|+||.++|||||||.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.037 Score=28.05 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=17.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 866999946999996899989946969
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.|.+.++=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.07 E-value=0.035 Score=28.18 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=19.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83866999946999996899989946969
Q 001507 29 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 29 i~~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.+||.++++-|+-|||||||.+.++..++
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.06 E-value=0.028 Score=28.89 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.++++|.-.||||||+|+|+|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.04 E-value=0.043 Score=27.63 Aligned_cols=22 Identities=50% Similarity=0.493 Sum_probs=13.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999728999999978
Q 001507 727 VLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.++.++||+|+||||.+--|+.
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6899989999988999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.04 E-value=0.034 Score=28.26 Aligned_cols=23 Identities=43% Similarity=0.498 Sum_probs=15.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 86999995999728999999978
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
..+++++||+|+||||.+-=|+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989999998999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.03 E-value=0.034 Score=28.31 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994699999689998994
Q 001507 34 LTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~ 53 (1065)
+.+|.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.038 Score=27.99 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++|.||.||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.02 E-value=0.032 Score=28.45 Aligned_cols=35 Identities=40% Similarity=0.452 Sum_probs=27.0
Q ss_pred EECCCC-CEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 101337-33788386699994699999689998994
Q 001507 19 LTILDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 19 ~~iL~~-vs~~i~~Gelt~IlG~sGSGKSTLL~~L~ 53 (1065)
.+-|+. +.|-+++|+++.|.|++|||||||..-++
T Consensus 22 i~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 22 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 988997426995588799998589898899999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.96 E-value=0.057 Score=26.79 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++|+|-+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.94 E-value=0.031 Score=28.54 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999898999999971
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.93 E-value=0.021 Score=29.75 Aligned_cols=28 Identities=25% Similarity=0.109 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4886999995999728999999978999
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
+.+..+.+.||.|+|||++.++|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.91 E-value=0.033 Score=28.39 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
.+++||++||||||++.|...
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.89 E-value=0.043 Score=27.61 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++|+|.-+||||||+++|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.87 E-value=0.033 Score=28.33 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959997289999999789
Q 001507 729 TALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+-+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.82 E-value=0.033 Score=28.37 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.82 E-value=0.033 Score=28.36 Aligned_cols=20 Identities=60% Similarity=0.738 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+.+
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.81 E-value=0.026 Score=29.02 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9999469999968999899469699971458999889358888898417887543
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQ 88 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~~~~i~yv~Q~ 88 (1065)
=.+++||+|+|||-|.+.|++.+.- --+..++..++ ..|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.034 Score=28.30 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=28.2
Q ss_pred ECCCC-CEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 01337-337883866999946999996899989946
Q 001507 20 TILDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 20 ~iL~~-vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G 54 (1065)
+-|+. +.+-+++|+++.|.|++|||||++..-++.
T Consensus 24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 899973169976897999988998878899999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.78 E-value=0.031 Score=28.52 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|+.|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.77 E-value=0.042 Score=27.67 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.|+||.||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.016 Score=30.45 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999728999999978
Q 001507 729 TALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g 748 (1065)
+-+-||+|+||||+.++++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99988999870546999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.73 E-value=0.036 Score=28.16 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999698999999970
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.69 E-value=0.045 Score=27.49 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
+++|-|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9983799878899999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.68 E-value=0.043 Score=27.57 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++|+|.-+||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.65 E-value=0.044 Score=27.53 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=16.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
..+.|.||.|.||||+++.++...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 816888989998999999999997
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.64 E-value=0.042 Score=27.65 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88699999599972899999997899
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.64 E-value=0.033 Score=28.36 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.61 E-value=0.045 Score=27.47 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++|+|.+-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.60 E-value=0.08 Score=25.80 Aligned_cols=30 Identities=23% Similarity=0.156 Sum_probs=24.5
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 378838669999469999968999899469
Q 001507 26 SGIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 26 s~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++..-.|.-+++.|+||+||||+...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.60 E-value=0.034 Score=28.31 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.56 E-value=0.044 Score=27.56 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++||.|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.56 E-value=0.038 Score=27.94 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCCC-CEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1337-3378838669999469999968999899469
Q 001507 21 ILDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 21 iL~~-vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-|+. +.+-+++|+++.|.|++|||||+|+.-++-.
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798845689869849999918999999999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.038 Score=28.00 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|+.|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.39 E-value=0.055 Score=26.86 Aligned_cols=27 Identities=37% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 866999946999996899989946969
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
...+.+++||+|+||||.+--|+-++.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 986899989999988999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.047 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.++||.||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.048 Score=27.30 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994699999689998994
Q 001507 34 LTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~ 53 (1065)
+.+|.|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.36 E-value=0.036 Score=28.15 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=22.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 386699994699999689998994696
Q 001507 30 RPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 30 ~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+-.+.+++||+|+||||.+--|+-++
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.03 Score=28.63 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 86999995999728999999978999
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
+...+|-|+-||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.042 Score=27.68 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.039 Score=27.91 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.052 Score=27.05 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.048 Score=27.25 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|+.|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.056 Score=26.85 Aligned_cols=25 Identities=48% Similarity=0.731 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
...++.||+|+||||+.++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.21 E-value=0.0088 Score=32.24 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.++++|++++|||||+|.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.21 E-value=0.056 Score=26.84 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.|+||.||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.053 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999728999999978
Q 001507 727 VLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g 748 (1065)
=++||-|+.|||||||...|..
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.06 Score=26.63 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899798999999970
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.056 Score=26.81 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.9
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 874886999995999728999999978
Q 001507 722 AFRPGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 722 ~~~~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
-+-.|+..+|+|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.08 E-value=0.06 Score=26.61 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 99994699999689998994696999714589998893588888984178875
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 86 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~~~~~~~G~I~inG~~~~~~~~~~~i~yv~ 86 (1065)
-+.|+|-+-+|||||+++|++-- +.+..+|..+..+.-.+..||
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~---------~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG---------IEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---------CCCCCCCCCCCCCCEEEEECC
T ss_conf 48888999998899999997799---------741369988877845899643
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.06 E-value=0.044 Score=27.52 Aligned_cols=21 Identities=48% Similarity=0.439 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999946999996899989946
Q 001507 34 LTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G 54 (1065)
-++|+||.|||||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.063 Score=26.48 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999898993999999998188
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.04 E-value=0.06 Score=26.62 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
-.+.|+||.||||||+-+.|+..
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 16999889999879999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.03 E-value=0.047 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994699999689998994
Q 001507 34 LTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~ 53 (1065)
-++|+||.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.00 E-value=0.05 Score=27.19 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.99 E-value=0.053 Score=26.97 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=29.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCC
Q ss_conf 687488699999599972899999997899-997168999997931
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYISGYP 765 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g~~-~~~~~~G~i~i~g~~ 765 (1065)
+-++.|.++-+.||+|+|||||...++... ..+ .--|+||...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g--~~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 9866633699964887488999999999875489--8899998976
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.98 E-value=0.093 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=13.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 88386699994699999689998994
Q 001507 28 IIRPSRLTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 28 ~i~~Gelt~IlG~sGSGKSTLL~~L~ 53 (1065)
..-.|.=+++.|+||+||||+.-.|.
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999999998089999999999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.045 Score=27.47 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.93 E-value=0.063 Score=26.48 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++||.|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.92 E-value=0.057 Score=26.78 Aligned_cols=24 Identities=54% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..++.||+|+||||+.++++..+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.058 Score=26.73 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+++.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.86 E-value=0.024 Score=29.25 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999469999968999899469699
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
.-+++.|++|+|||||++.+++.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 70899889985299999999873798
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.043 Score=27.63 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.83 E-value=0.047 Score=27.31 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.83 E-value=0.065 Score=26.39 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8869999959997289999999789
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.|..+++-|+-||||||+.+.|...
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.82 E-value=0.06 Score=26.62 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99994699999689998994696
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
+.+|-|..||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.064 Score=26.43 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 886999995999728999999978999
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
.|..+++-|+-||||||+.+.|+....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.74 E-value=0.05 Score=27.14 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.055 Score=26.90 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99995999728999999978
Q 001507 729 TALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g 748 (1065)
+-+.||.|+||||+.++++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988998775589999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.05 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|++|+|||||++.+.+
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.08 Score=25.81 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=14.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6699994699999689998994696
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
....+++||+|+|||.|.+.|+..+
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 6589997787500699999998633
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.05 Score=27.14 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.065 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.061 Score=26.58 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.64 E-value=0.07 Score=26.16 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68748869999959997289999999789
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
|-++.|.++-+-||+|+|||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.057 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.58 E-value=0.11 Score=24.94 Aligned_cols=30 Identities=30% Similarity=0.170 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 468748869999959997289999999789
Q 001507 720 TGAFRPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 720 s~~~~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++..-.|.-+.+.|+||+||||+...|..+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999999999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.52 E-value=0.065 Score=26.38 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 866999946999996899989946969
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.-.+.+++||+|+||||.+-=|+-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.052 Score=27.05 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.08 Score=25.80 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998992999999999728
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.45 E-value=0.069 Score=26.24 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.45 E-value=0.055 Score=26.86 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=29.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 999995999728999999978999971689999979318900123538897379
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN 781 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~ 781 (1065)
-+-++||+|+|||-|.+.|++...- | -+..++...+ . .|||-.+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-P---Fv~~daT~fT-----e-aGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-P---FIKVEATKFT-----E-VGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-C---EEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-C---EEEEECCEEE-----E-CCEEECC
T ss_conf 4799899998899999999987389-8---8986255114-----1-1111044
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=91.42 E-value=0.047 Score=27.34 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 68748869999959997289999999789
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
...+.| .+-+.||.|+|||.|.+.|++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 436886-3888779985088999999998
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.41 E-value=0.063 Score=26.49 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=25.6
Q ss_pred CCCCCEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 133733788386699994699999689998994696
Q 001507 21 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 21 iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
+|+.++. |=.++.|+||-++|||||||.|.|..
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9970799---87999988999997999999980998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.41 E-value=0.042 Score=27.64 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.+.||.|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.40 E-value=0.07 Score=26.18 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|++|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.40 E-value=0.054 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=91.38 E-value=0.057 Score=26.78 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
.+++||..+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999958898099999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.051 Score=27.10 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=38.8
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99812231899999999999999999999848968999925885889974391999934969999179998615799999
Q 001507 857 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYF 936 (1065)
Q Consensus 857 ~p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~~~~~~~d~~~~l~~gg~~~~~g~~~~~~~~~~~~~ 936 (1065)
+.+++++||.-. |.......+.+.+... .....+|++++++....-..-+|. ..+.+.|+. .+++..+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~~i~~~l~sR~-------~~i~~~~~~--~~~~~~~l 199 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPIIAPIKSQC-------LLIRCPAPS--DSEISTIL 199 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSSCHHHHTTS-------EEEECCCCC--HHHHHHHH
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCCCHHHHHHCCH-------HEEEECCCC--HHHHHHHH
T ss_conf 724999424333-4543111221002213-566430001021110025442100-------024303533--04689999
Q ss_pred HH
Q ss_conf 86
Q 001507 937 EA 938 (1065)
Q Consensus 937 ~~ 938 (1065)
..
T Consensus 200 ~~ 201 (252)
T d1sxje2 200 SD 201 (252)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.36 E-value=0.094 Score=25.32 Aligned_cols=36 Identities=42% Similarity=0.520 Sum_probs=29.3
Q ss_pred CCCC-CE-EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1337-33-788386699994699999689998994696
Q 001507 21 ILDD-LS-GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 21 iL~~-vs-~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.|+. +. +-+++|.+|.+.||+|||||||+--++...
T Consensus 41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997567996673589980577747899999999998
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.35 E-value=0.063 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
.+||+|...+|||||+|+|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.055 Score=26.88 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
+++|.|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.069 Score=26.20 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66999946999996899989946969
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-.+.+++||+|+||||.+-=|+-++.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999989999998999999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.062 Score=26.55 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.066 Score=26.36 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++++|..|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.072 Score=26.10 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999984
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.25 E-value=0.082 Score=25.71 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
.+.|+||.||||||+.+.|+..
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.054 Score=26.95 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.24 E-value=0.042 Score=27.66 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994699999689998994
Q 001507 35 TLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~ 53 (1065)
++++|++|+|||||++.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEETTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999998899998873
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.23 E-value=0.095 Score=25.29 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 74886999995999728999999978
Q 001507 723 FRPGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 723 ~~~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
.+||.++.+-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.054 Score=26.93 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
-+++|+|..|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.055 Score=26.86 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999799999999973
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.19 E-value=0.089 Score=25.46 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48869999959997289999999789
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+|...+.++||+|+|||.|.+.|+..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.084 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|..|+|||||++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.081 Score=25.74 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
++.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.088 Score=25.52 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|++|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.066 Score=26.37 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.071 Score=26.14 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899088999999971
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.95 E-value=0.048 Score=27.28 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 869999959997289999999789
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+-.+||+|...+|||||+++|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.066 Score=26.35 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.07 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.92 E-value=0.092 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899499999999973
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.099 Score=25.16 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=23.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83866999946999996899989946969
Q 001507 29 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 29 i~~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++..-+++.||+|+|||++.++|+..++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.086 Score=25.58 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.076 Score=25.94 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.74 E-value=0.096 Score=25.26 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.69 E-value=0.088 Score=25.53 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
..+.||+|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.68 E-value=0.047 Score=27.32 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999728999999978
Q 001507 727 VLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g 748 (1065)
-+++++|++|+|||||++.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999999999988999988733
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.59 E-value=0.095 Score=25.27 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-+|++|.-.+|||||++.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.56 E-value=0.079 Score=25.83 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++|+|.+|+|||||++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.069 Score=26.24 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.51 E-value=0.048 Score=27.30 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.50 E-value=0.093 Score=25.34 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999469999968999899469699
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
-..+.||+|+||||+.++|+..++.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.47 E-value=0.11 Score=24.91 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 66999946999996899989946969
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-.-+++.||+|+|||++.++|+...+
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 80799889699988999999862010
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.43 E-value=0.081 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994699999689998994
Q 001507 35 TLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~ 53 (1065)
.+++||.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.39 E-value=0.081 Score=25.74 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=0.08 Score=25.77 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.072 Score=26.09 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.|+|.+|+|||||++.+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.38 E-value=0.087 Score=25.55 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599972899999997
Q 001507 728 LTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~ 747 (1065)
++||.|+-||||||..+.|.
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.29 E-value=0.11 Score=24.84 Aligned_cols=23 Identities=52% Similarity=0.764 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+++|-|.-||||||+++.|....
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.087 Score=25.55 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.1 Score=25.04 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.075 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.22 E-value=0.11 Score=24.96 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994699999689998994
Q 001507 34 LTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~ 53 (1065)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.20 E-value=0.073 Score=26.04 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+++||+.+|||||++.|....
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=0.096 Score=25.25 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=25.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 788386699994699999689998994696
Q 001507 27 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 27 ~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
+.+-.|+-.+|.|++|+|||||+..++...
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 564578755686799988789999999977
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.11 Score=24.90 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999469999968999899469699
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
++.+|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.13 E-value=0.11 Score=24.86 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799698999999973
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.04 E-value=0.059 Score=26.66 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999469999968999899469
Q 001507 34 LTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
-++++|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998789999998448
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.02 E-value=0.13 Score=24.43 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 669999469999968999899469699
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
...++|.||+|+||||+++.++..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 881688898999899999999999754
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.06 Score=26.61 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.12 Score=24.65 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.13 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.88 E-value=0.1 Score=25.08 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.096 Score=25.27 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.096 Score=25.25 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.11 Score=24.97 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.74 E-value=0.13 Score=24.35 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999946999996899989946
Q 001507 34 LTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G 54 (1065)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.73 E-value=0.09 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++-+...
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.72 E-value=0.088 Score=25.52 Aligned_cols=29 Identities=41% Similarity=0.647 Sum_probs=24.0
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83866999946999996899989946969
Q 001507 29 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 29 i~~Gelt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+++..-+.+.||+|+|||+|.+++++.++
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.13 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.67 E-value=0.1 Score=25.05 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.66 E-value=0.13 Score=24.48 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999469999968999899
Q 001507 35 TLLLGPPSSGKTTLLLAL 52 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L 52 (1065)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.65 E-value=0.076 Score=25.94 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.65 E-value=0.11 Score=24.76 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599972899999997
Q 001507 728 LTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~ 747 (1065)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.61 E-value=0.07 Score=26.18 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.14 Score=24.25 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++-+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999498999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.58 E-value=0.11 Score=24.77 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999959997289999999789
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
-.+||+|-..+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.57 E-value=0.14 Score=24.18 Aligned_cols=21 Identities=52% Similarity=0.662 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
-+||+|..|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.53 E-value=0.11 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995999728999999978
Q 001507 727 VLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g 748 (1065)
-++.++|.+|+|||||++-+..
T Consensus 7 ~KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 7799998999988999998950
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.12 Score=24.64 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 8 i~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899789999999971
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.33 E-value=0.11 Score=24.88 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999599972899999997899
Q 001507 729 TALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+-+.||.|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.31 E-value=0.12 Score=24.55 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.12 Score=24.60 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 869999959997289999999789
Q 001507 726 GVLTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
-=+++++|..|+|||||++-+.+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 379999998997899999999719
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.28 E-value=0.12 Score=24.57 Aligned_cols=47 Identities=6% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHCCCCEEECCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 729981223189999-99999999999999998489689999258858
Q 001507 855 VANPSIVFMDEPTSG-LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 901 (1065)
Q Consensus 855 ~~~p~il~lDEptsg-lD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~~ 901 (1065)
+....++++|+--.= -+...+..+..++......|+.+|+++..+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
T ss_conf 762130101126550586577889999999876316638995487510
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.24 E-value=0.11 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.20 E-value=0.067 Score=26.31 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|.+|+|||||++.+...
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.17 E-value=0.16 Score=23.82 Aligned_cols=24 Identities=46% Similarity=0.692 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
=+.+.||+|+|||++.++++...+
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 468766998883089999998748
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.14 E-value=0.11 Score=24.75 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++.++|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.14 Score=24.05 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.98 E-value=0.13 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999599972899999997
Q 001507 728 LTALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~ 747 (1065)
++.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.93 E-value=0.12 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.90 E-value=0.12 Score=24.57 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
+++++|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.83 E-value=0.13 Score=24.39 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=17.8
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 699994699999689998994
Q 001507 33 RLTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~ 53 (1065)
.-++|+|++|||||++++.+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHH
T ss_conf 658999079996899999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.13 Score=24.36 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.59 E-value=0.15 Score=23.96 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=4.9
Q ss_pred HHHCCCEEEEEE
Q ss_conf 984698087873
Q 001507 191 LLVGPARVLFMD 202 (1065)
Q Consensus 191 al~~~~~IllLD 202 (1065)
++..+..++++|
T Consensus 74 ~~~~g~~~iiiD 85 (433)
T d1e9ra_ 74 GLLRGDRMVIVD 85 (433)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCCEEEEE
T ss_conf 984799889996
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.50 E-value=0.17 Score=23.65 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||+|++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.45 E-value=0.22 Score=22.81 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4886999995999728999999978999
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
+|.=-+|++|.-.+|||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.43 E-value=0.18 Score=23.45 Aligned_cols=25 Identities=48% Similarity=0.711 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.-+++.||+|+|||++.++|+..++
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.41 E-value=0.17 Score=23.66 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..+.||+|+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.19 Score=23.25 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|.+|+|||||++.+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.25 E-value=0.23 Score=22.66 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6874886999995999728999999978
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
..+-.||+.+|.|++|+|||+|+..++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.14 E-value=0.099 Score=25.17 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999469999968999899
Q 001507 35 TLLLGPPSSGKTTLLLAL 52 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L 52 (1065)
++++||+++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.08 E-value=0.2 Score=23.06 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 886999995999728999999978
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
|.=-+|++|.-++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.06 E-value=0.13 Score=24.27 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+++++|..|+|||||++.+...
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.15 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999959997289999999789
Q 001507 728 LTALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~ 749 (1065)
++.++|..|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.92 E-value=0.12 Score=24.61 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9994699999689998994
Q 001507 35 TLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~ 53 (1065)
++|+||.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.76 E-value=0.16 Score=23.71 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.71 E-value=0.24 Score=22.53 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999469999968999899469
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
.+.+|.|+.||||||..+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.68 E-value=0.17 Score=23.53 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99994699999689998994
Q 001507 34 LTLLLGPPSSGKTTLLLALA 53 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~ 53 (1065)
=.+++||+++|||||...|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.52 E-value=0.28 Score=22.10 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999469999968999899469699
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
.++|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.50 E-value=0.23 Score=22.76 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=25.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78838669999469999968999899469
Q 001507 27 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 27 ~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
+-++.|.+|.+.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.39 E-value=0.2 Score=23.06 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99946999996899989946969
Q 001507 35 TLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
..+.||+|+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.28 E-value=0.17 Score=23.60 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.++.||+|+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.18 E-value=0.21 Score=22.93 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHCCCEEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
Q ss_conf 84698087873798787-9598999999999987607988999953796479
Q 001507 192 LVGPARVLFMDEISNGL-DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 242 (1065)
Q Consensus 192 l~~~~~IllLDEPTSgL-Ds~s~~~i~~~L~~~~~~~~~t~Ii~i~q~~~~~ 242 (1065)
.+...+++++||.-.=. +......++..+.... ..++.+|++...+..+.
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHC
T ss_conf 8762130101126550586577889999999876-31663899548751001
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.11 E-value=0.23 Score=22.70 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.6
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 86999995999728999999
Q 001507 726 GVLTALVGVSGAGKTTLMDV 745 (1065)
Q Consensus 726 g~~~ai~G~sGaGKsTll~~ 745 (1065)
+..+.|.||-|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.89 E-value=0.16 Score=23.79 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=14.5
Q ss_pred CCEEEEEECCCCCCHHHHHH
Q ss_conf 86699994699999689998
Q 001507 31 PSRLTLLLGPPSSGKTTLLL 50 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~ 50 (1065)
.|- .+|.|++||||||.|-
T Consensus 14 ~~~-~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 14 TGP-CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp SSE-EEECCCTTSCHHHHHH
T ss_pred CCC-EEEEEECCCCHHHHHH
T ss_conf 999-8999628843899999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.69 E-value=0.3 Score=21.91 Aligned_cols=30 Identities=47% Similarity=0.653 Sum_probs=27.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 788386699994699999689998994696
Q 001507 27 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 27 ~~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
+-++.|.+|-+.|++|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 986675478980587652279999999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.68 E-value=0.14 Score=24.10 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCCEECCCCCEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 3789888415047753210133733788386699994699999689998
Q 001507 2 TEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLL 50 (1065)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gelt~IlG~sGSGKSTLL~ 50 (1065)
+|.++.++. .....++++. .|. +.|.|++||||||.|-
T Consensus 5 ~~~~~~~L~-----~eQ~~~v~~~-----~g~-~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 5 SEQLLAHLN-----KEQQEAVRTT-----EGP-LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp HHHHHTTSC-----HHHHHHHHCC-----SSC-EEEEECTTSCHHHHHH
T ss_pred HHHHHHHCC-----HHHHHHHHCC-----CCC-EEEEECCCCCHHHHHH
T ss_conf 899998678-----9999998299-----999-8999529866899999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.29 Score=22.06 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999599972899999997899
Q 001507 727 VLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 727 ~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
...+|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.51 E-value=0.14 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999946999996899989946969
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
+..+.||+|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.37 E-value=0.21 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
-.++|=|+-||||||+++.|+..+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2999989867789999999999817
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.31 E-value=0.27 Score=22.20 Aligned_cols=26 Identities=46% Similarity=0.621 Sum_probs=15.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
|....+++||+|+|||.+.+.|+..+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76699997888624899999999983
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.26 E-value=0.25 Score=22.45 Aligned_cols=23 Identities=48% Similarity=0.527 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-+.|+|+.|.|||+++.-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=86.24 E-value=0.41 Score=20.99 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 886999995999728999999978999
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
.+-.++++|...+|||||+|.|.|+..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.96 E-value=0.33 Score=21.69 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488699999599972899999997899
Q 001507 724 RPGVLTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 724 ~~g~~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
+|...+.++||+|+|||.+.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.62 E-value=0.3 Score=21.91 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999959997289999999789
Q 001507 729 TALVGVSGAGKTTLMDVLAGR 749 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~g~ 749 (1065)
+-++||+|+|||-|.+.|+..
T Consensus 71 iLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 244189986378999999864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.54 E-value=0.31 Score=21.81 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99946999996899989946
Q 001507 35 TLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G 54 (1065)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.16 E-value=0.39 Score=21.15 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78838669999469999968999899469
Q 001507 27 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 27 ~~i~~Gelt~IlG~sGSGKSTLL~~L~G~ 55 (1065)
..+-.|+-..|.|++|+|||||+..++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.89 E-value=0.32 Score=21.72 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999469999968999899469
Q 001507 35 TLLLGPPSSGKTTLLLALAGR 55 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~ 55 (1065)
++++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.78 E-value=0.27 Score=22.24 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995999728999999978999
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRKT 751 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~~ 751 (1065)
++.|-|.=|||||||++-+.....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899864888999999999985678
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.45 E-value=0.3 Score=21.90 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++.++|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.16 E-value=0.29 Score=22.00 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999469999968999899469699
Q 001507 34 LTLLLGPPSSGKTTLLLALAGRLGH 58 (1065)
Q Consensus 34 lt~IlG~sGSGKSTLL~~L~G~l~~ 58 (1065)
.++|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.88 E-value=0.38 Score=21.27 Aligned_cols=28 Identities=43% Similarity=0.600 Sum_probs=21.8
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88386699994699999689998994696
Q 001507 28 IIRPSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 28 ~i~~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
..+++. ...+||+|+|||-|.+.|+..+
T Consensus 65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 678753-2441899863789999998644
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.79 E-value=0.37 Score=21.33 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 886999995999728999999978
Q 001507 725 PGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 725 ~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
|.=-+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.62 E-value=0.37 Score=21.34 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
++.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=83.50 E-value=0.49 Score=20.49 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=15.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 66999946999996899989946
Q 001507 32 SRLTLLLGPPSSGKTTLLLALAG 54 (1065)
Q Consensus 32 Gelt~IlG~sGSGKSTLL~~L~G 54 (1065)
|.+.+++||-.|||||-|--...
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~ 24 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLH 24 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 37999991506789999999999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.08 E-value=0.55 Score=20.17 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+-.++|+|.+-+|||||+|.|.|+-
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 75278998667544355542542661
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.96 E-value=0.42 Score=20.93 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=20.8
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9812231899999999999999999999848968999925885
Q 001507 858 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 900 (1065)
Q Consensus 858 p~il~lDEptsglD~~~~~~i~~~l~~~~~~~~tvi~~~H~~~ 900 (1065)
.+++++||.-. |...++..+.+.+.+. ..+..+|+++++++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCC-CCCEEEEEECCCCC
T ss_conf 87999978110-8999999999998568-98869999738856
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.50 E-value=0.49 Score=20.50 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=18.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86699994699999689998994696
Q 001507 31 PSRLTLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 31 ~Gelt~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.|++.+|+||-.|||||-|--.+.++
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~ 26 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRF 26 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 94799999141678999999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=0.48 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995999728999999978
Q 001507 728 LTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g 748 (1065)
.+-+.||.|+||||+.+.++.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 798889998759999999998
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.66 E-value=0.53 Score=20.27 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999599972899999997899
Q 001507 728 LTALVGVSGAGKTTLMDVLAGRK 750 (1065)
Q Consensus 728 ~~ai~G~sGaGKsTll~~l~g~~ 750 (1065)
-..++|+.|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73998358754479999999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.77 E-value=0.62 Score=19.82 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999946999996899989946969
Q 001507 33 RLTLLLGPPSSGKTTLLLALAGRLG 57 (1065)
Q Consensus 33 elt~IlG~sGSGKSTLL~~L~G~l~ 57 (1065)
.=.+++|++|.|||++...|+.++.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8967988898867799999999998
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.51 E-value=0.5 Score=20.46 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9994699999689998994696
Q 001507 35 TLLLGPPSSGKTTLLLALAGRL 56 (1065)
Q Consensus 35 t~IlG~sGSGKSTLL~~L~G~l 56 (1065)
.+++|++|.|||++...|+.++
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 7687999988999999999999
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.37 E-value=0.43 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=23.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6874886999995999728999999978
Q 001507 721 GAFRPGVLTALVGVSGAGKTTLMDVLAG 748 (1065)
Q Consensus 721 ~~~~~g~~~ai~G~sGaGKsTll~~l~g 748 (1065)
+.+-.|++.+|+|++|+|||+|+.-++.
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6766787787656888885899999997
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.22 E-value=0.47 Score=20.63 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999599972899999997
Q 001507 729 TALVGVSGAGKTTLMDVLA 747 (1065)
Q Consensus 729 ~ai~G~sGaGKsTll~~l~ 747 (1065)
+||+|.-|+|||||++.|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|