Citrus Sinensis ID: 001509
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | 2.2.26 [Sep-21-2011] | |||||||
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.822 | 0.757 | 0.338 | 1e-143 | |
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.780 | 0.708 | 0.348 | 1e-143 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.780 | 0.708 | 0.347 | 1e-142 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.782 | 0.710 | 0.340 | 1e-140 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.802 | 0.743 | 0.267 | 5e-90 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.792 | 0.812 | 0.241 | 7e-43 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.800 | 0.792 | 0.229 | 4e-32 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.274 | 0.279 | 0.241 | 8e-09 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.274 | 0.279 | 0.241 | 9e-09 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.274 | 0.279 | 0.241 | 9e-09 |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust.
Identities = 329/971 (33%), Positives = 518/971 (53%), Gaps = 95/971 (9%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQA----- 412
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 413 -------------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 454 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 511
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNSISVTTSYNLARL 506
Query: 512 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 572 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 630
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 631 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 690
H ++A +Y +V+ + NL+AANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 750
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 751 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810
L+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVG 800
Query: 811 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 870
+ FD + C LL A+ H A +++++ + E R K
Sbjct: 801 DKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEEK-------------EMRTKQ 845
Query: 871 EEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 930
E++K+ L +K E E+K LR+ EE +++ EQ R+ R S + E +K+
Sbjct: 846 EQEKEVLRQKLLKEQEEKHLREIEEQ-KKLLEQ-RAQYLEKTRNLLSFTGEMETPKEKKQ 903
Query: 931 RRKGGKRRKKD 941
R GG+R KK+
Sbjct: 904 RGGGGRRSKKN 914
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Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 321/920 (34%), Positives = 502/920 (54%), Gaps = 89/920 (9%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSS--FVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQA----- 412
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 413 -------------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 454 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 511
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 512 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 572 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 630
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 631 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 690
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 750
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 751 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVG 800
Query: 811 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAALA 863
+ FD T C LL A+ H A +++++ R Q +E RQ L
Sbjct: 801 DKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLK 858
Query: 864 EE--ARRKAEEQKKYLLEKR 881
E+ R + +E++K LLE+R
Sbjct: 859 EQEEKRLREKEEQKKLLEQR 878
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Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 320/920 (34%), Positives = 501/920 (54%), Gaps = 89/920 (9%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQA----- 412
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 413 -------------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 454 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 511
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 512 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 572 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 630
A S++G+L L +W ++ F R D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 631 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 690
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 750
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 751 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+LS
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVG 800
Query: 811 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAARQAALA 863
+ FD + C LL A+ H A +++++ R Q +E RQ L
Sbjct: 801 DKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLK 858
Query: 864 EE--ARRKAEEQKKYLLEKR 881
E+ R + +E++K LLE+R
Sbjct: 859 EQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 315/926 (34%), Positives = 494/926 (53%), Gaps = 93/926 (10%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQA----- 412
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 413 -------------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 454 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARL 511
L LD R + + H E +N VT +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTTYNLARL 506
Query: 512 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 572 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 630
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 631 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 690
H ++A +Y +V+ + NLYAANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 750
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 751 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810
L+A H+AP++ L F+ + +Q+ + L+ + V + V ELE A R F++LS
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVG 800
Query: 811 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 870
+ FD + C LL A+ H A +++++ + E R K
Sbjct: 801 DKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEEK-------------ELRAKQ 845
Query: 871 EEQKKYLLEKRKLEDEQKRLRQQEEH 896
E++K+ L +K E E+KRL++ EE
Sbjct: 846 EQEKEILRQKLIKEQEEKRLKEIEEQ 871
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 250/935 (26%), Positives = 467/935 (49%), Gaps = 80/935 (8%)
Query: 4 VYIPVQNSEEE--VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++S E+ + + +LP D ++L IL+AE+A L W+ +A EY++Q +V+ F
Sbjct: 14 IAIPLKDSHEDEVIEINCSELP-DGEEVLQILEAEEAKLSYWIEVALEYYRQDRVDLFMM 72
Query: 62 ILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
ILE S EY V+ +++ L+ L Y+ G E + +K + F AT +N A
Sbjct: 73 ILESAGSRAGLEYEG-VKQDQMRALDILAAYWMTQGYREKAKDKKSDFFSKATVLFNTAD 131
Query: 122 RIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+I M+E S + L + + E A F V++ + NV L+G+A + FN+
Sbjct: 132 KIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIAFNKK 191
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA++++P NV A+
Sbjct: 192 DYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYNVSAMCG 251
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L ++ L + ++ + R++ + +AL +LANHFFF + L A
Sbjct: 252 LGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKEIERAWTLAWHAAT 311
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ K+ ++Y + R H++G ++ A YY + + N H +YGLGQ+ +
Sbjct: 312 YNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEH--TLAHYGLGQMYIHRN 369
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EKAQELLRKAAKIDP 407
+ A+ F+ V + P+N +T+K LG +Y VQL +K +++L K ++
Sbjct: 370 EIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVEN 429
Query: 408 RDAQART------------------------LLKKAGEEVPIEVLNNIGVIHFEKGEFES 443
D +A L+ + E+LNN+G ++ ++E
Sbjct: 430 DDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYEK 489
Query: 444 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503
A FK A L+ + T D + +L+ R + +H+ +T
Sbjct: 490 AEHHFKRA------KERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------LT 527
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+ + S + + +
Sbjct: 528 IRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQGV 587
Query: 564 KVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGNWNYFAAL 620
+ + P +++G+L ++W+ A++ F S + K D Y+ ++LGN +F L
Sbjct: 588 QFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGN-VWFEQL 646
Query: 621 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 680
N R + E ++++A ++Y + + N+YAANG G VLA K ++ ++D+F+QV+E
Sbjct: 647 LNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRE 706
Query: 681 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 740
+ S + DVW+N+AHV + + A++MY + ++KF D+ + YLA+ +Y A
Sbjct: 707 STS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRA 761
Query: 741 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAV 800
+ K++L A+ N L+F+ + ++K + L+ + T+++V + + +L+ A
Sbjct: 762 NMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSEQVTAAIDDLKFAD 821
Query: 801 RVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHREAAEREEQQNRQRQEA 856
++F ++S + + T + CK LL AK AA+ ++++ R+ E
Sbjct: 822 KIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEERRLMEK 881
Query: 857 ARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 891
+ +A + + E + K EK+KLED K LR
Sbjct: 882 QEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 241/999 (24%), Positives = 427/999 (42%), Gaps = 155/999 (15%)
Query: 4 VYIPVQNSEEE-VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+ +P+ E++ V + LP DA+++ +IL EQAP + W A EY+ +G EQ I
Sbjct: 14 IEVPLLGQEDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILI 73
Query: 63 LEEGSSPEIDEYYADVRYERIAILNA-LGVYYTYLGKIETKQRE---KEEHFILATQYYN 118
L+ G D E + ILNA + Y + + +++ ++E Y
Sbjct: 74 LKSGLETLKDS-------ESLCILNANIAAIYLSMAREAMLKKDTDLRDEQLRNVRTYLE 126
Query: 119 KASRIDMHEPSTWVGKG--QLLLA---KGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173
A+ ID + G ++LL K +E A+ F VL+ N+ LG+A + +
Sbjct: 127 AANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSGGNILGFLGKARILY 186
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN--V 231
+G Y +L+ Y+RAL +P R+GIGLC + L A A+ R QLDP+N V
Sbjct: 187 AKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLDPKNTVV 246
Query: 232 EALVALAVMDL---QANEAAGIR---KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
+ + L DL N + ++ K ++ +QRAF+ +A + L + + +
Sbjct: 247 DTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYE 306
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+L E + + + YY + R+YH G+ EKA Y + K + H +
Sbjct: 307 GCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKA-KAADDRH--LLSS 363
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAA 403
G+GQ+Q+ D SA FE++ E E L LG ++ + + KA+ LL +A
Sbjct: 364 VGIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAF 423
Query: 404 KI------------DPRDAQART------------------LLKKAGEEVPIEVLNNIGV 433
+ D QAR L+ A V E+LNNI V
Sbjct: 424 NLVGSSKLPRVVDSDLYITQARLWEKEDTKKSLGFLTRALDFLESAHMSVGPELLNNIAV 483
Query: 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 493
+ + G AH G+ I K K+ + DA+ + D
Sbjct: 484 LQYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLLLD------------ 517
Query: 494 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 553
+NLAR E++ +T AS Y IL K+ ++DA +R + + N +
Sbjct: 518 ------------YNLARCEEELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNEE 565
Query: 554 LSIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 607
E+ ++ L+V + LS +++ + +T R D D Y+
Sbjct: 566 TFKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTLRHWHD-----DIYS 620
Query: 608 TLSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 663
+ LGN A + N++ K + ++ KA + Y + I N +AA G ++LA
Sbjct: 621 LVQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDPKNAHAAQGIAIILA 679
Query: 664 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 723
+ QF + + ++V+EA + + IN+ + F+ A+++++
Sbjct: 680 QNRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSRAIEVFETVYSSTGE 733
Query: 724 NTDAQILLYLARTHYE---AEQWQDCKKSLLRAIHLA----PSNYTLRFDAGVAMQKFSA 776
+ +L L R + + D K +R LA P N +L F+ VA +F
Sbjct: 734 SDTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPSLLFN--VAFVQFQL 791
Query: 777 STLQKTR----RTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 832
L + + RT +++ + +L+ ++ F+ L + H Y
Sbjct: 792 CELIRQKPENSRTVEDLNFAMQQLDASIETFTKLVSVE--------------HPPYSPTS 837
Query: 833 LDA-AKIHREAAEREEQQNRQRQEAARQ--AALAEEAR--RKAEEQKKYLLEKRKLEDEQ 887
++ AK+ + +R+ ++ Q Q + AA E+AR R+ E+ ++ E+ L+++Q
Sbjct: 838 IEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEKQ 897
Query: 888 KRLRQQEEHFQRVKE---QWRSSTPASKRRERSENDDDE 923
+R RQ +E Q+++E +WR S + + S +DD+E
Sbjct: 898 ERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 246/1071 (22%), Positives = 446/1071 (41%), Gaps = 218/1071 (20%)
Query: 6 IPVQNSEEEVRVALDQ-LPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILE 64
IP++ SEE V + L+ LP D +D+ +L E + + WL IA Y GK + +++E
Sbjct: 21 IPLKASEELVGIDLETDLPDDPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIE 80
Query: 65 EGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124
+D + ER ++ L + L K ++ E +EH + + N I
Sbjct: 81 MA----LDVFQNS---ERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAEL-NLKDAIG 132
Query: 125 MHEPSTWVGKG----QLLLAKGEVEQA---SSAFKIVLEAD--------RDNVPALLGQA 169
+P TW+G +L +G ++A S F + A+ + N LL +A
Sbjct: 133 F-DP-TWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRA 190
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ + + Y SL+ ++ L ++P R+GIGLC ++L A +++QRALQL+P+
Sbjct: 191 KLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPK 250
Query: 230 NVEALVALAVMDLQ------ANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
N A + + + + + N+ K + + F + + L L +++F
Sbjct: 251 NTSASILVLLGEFRESFTNSTNDKTFKEAFTKALSDLNNIFSENQHNPVLLTLLQTYYYF 310
Query: 281 TGQHFLVEQLTETALAVTNHGPTK----------SHSYYNLARSYHSKGDYEKAGLYYMA 330
G + +T L + +H K S S + R++++ GDY K+ + +
Sbjct: 311 KGDY-------QTVLDIYHHRILKMSPMIAKIVLSESSFWCGRAHYALGDYRKSFIMFQE 363
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI----- 385
S+K K + + GLGQ Q+K ++ FE +Y N E+L+ L +I
Sbjct: 364 SLK---KNEDNLLAKLGLGQTQIKNNLLEESIITFEN---LYKTN-ESLQELNYILGMLY 416
Query: 386 -------------------------------YVQLGQIEKAQELLRKA----AKIDPRDA 410
Y++L K Q ++ +A +++
Sbjct: 417 AGKAFDAKTAKNTSAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQN 476
Query: 411 QART---LLKKAGEE-------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 460
Q +T L KA EE +P+EVLNN+ HF G+F A FK A
Sbjct: 477 QYKTSLDYLSKALEEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA--------- 527
Query: 461 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 520
K V D S+ +T+ +N+AR E+ +D
Sbjct: 528 -----KAKVSDKDESV------------------------NITLEYNIARTNEK-NDCEK 557
Query: 521 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLG 577
+ +Y + + Y+ A +R + A++ ++ +S E+ N+ L +N S G
Sbjct: 558 SESIYSQVTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG 616
Query: 578 DLELKNDDWVKAKETFRAASDAT----DGKDSYATLSLGNWNYFAA-----LRNEKRAPK 628
LKN K E + T + D+YA +SL N A RN K K
Sbjct: 617 -WYLKNSKERKNNEKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEK 675
Query: 629 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 688
+ ++L KA +LY +V+ N++AA G ++ AE + + ++ +V+++
Sbjct: 676 SKHSYL-KAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE--- 731
Query: 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY-------EA 740
DV +NLAH Y + A++ Y+ L+KF T IL L R Y
Sbjct: 732 ---DVQLNLAHCYLEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWYARAIKERSV 788
Query: 741 EQWQDCKKSLLRAIHL-----APSNYTLRFDAGVAMQKFS-ASTLQKTR---RTADEVRS 791
+Q ++ A+ L + S + +A+ F A TL+++ RT +++
Sbjct: 789 NFYQKALENAKTALDLFVKESSKSKFIHSVKFNIALLHFQIAETLRRSNPKFRTVQQIKD 848
Query: 792 TVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREE---Q 848
++ L+ + +F L+ ++ ++++ ++ + + +A + R E+EE +
Sbjct: 849 SLEGLKEGLELFRELNDLKEFNM--IPKEELEQRIQLGETTMKSA-LERSLNEQEEFEKE 905
Query: 849 QNRQRQEAAR---QAALAEEARRKAEEQKKYL-LEK-----RKLEDEQKRLRQQEEHF-- 897
Q+ + EA + + L E+ K EE+ + L LEK RKL+DE ++L Q+ E
Sbjct: 906 QSAKIDEARKILEENELKEQGWMKQEEEARRLKLEKQAEEYRKLQDEAQKLIQEREAMAI 965
Query: 898 -----------QRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
++ P KR+ ++ + E +RRK K+
Sbjct: 966 SEHNVKDDSDLSDKDNEYDEEKPRQKRKRSTKTKNS----GESKRRKAAKK 1012
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 135/319 (42%), Gaps = 27/319 (8%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G LL A G +E+A + + +E + A CV +G ++ +++A+ + P+
Sbjct: 164 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 223
Query: 195 CPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253
A I LG L ++ +A A+ RAL L P + LA + E I
Sbjct: 224 FLDAYINLGNVLKEARI--FDRAVAAYLRALSLSPNHAVVHGNLACVYY---EQGLIDLA 278
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
++ +RA E+ P+ A LAN G E TAL + PT + S NLA
Sbjct: 279 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLAN 335
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+G+ E+A Y +++ EF + L V + G + AL ++++ + I P
Sbjct: 336 IKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433
+ +G+ ++ ++ A + +A +I+P A A + N+
Sbjct: 393 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS---------------NLAS 437
Query: 434 IHFEKGEFESAHQSFKDAL 452
IH + G A S++ AL
Sbjct: 438 IHKDSGNIPEAIASYRTAL 456
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 135/319 (42%), Gaps = 27/319 (8%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G LL A G +E+A + + +E + A CV +G ++ +++A+ + P+
Sbjct: 164 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 223
Query: 195 CPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253
A I LG L ++ +A A+ RAL L P + LA + E I
Sbjct: 224 FLDAYINLGNVLKEARI--FDRAVAAYLRALSLSPNHAVVHGNLACVYY---EQGLIDLA 278
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
++ +RA E+ P+ A LAN G E TAL + PT + S NLA
Sbjct: 279 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLAN 335
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+G+ E+A Y +++ EF + L V + G + AL ++++ + I P
Sbjct: 336 IKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433
+ +G+ ++ ++ A + +A +I+P A A + N+
Sbjct: 393 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS---------------NLAS 437
Query: 434 IHFEKGEFESAHQSFKDAL 452
IH + G A S++ AL
Sbjct: 438 IHKDSGNIPEAIASYRTAL 456
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 135/319 (42%), Gaps = 27/319 (8%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G LL A G +E+A + + +E + A CV +G ++ +++A+ + P+
Sbjct: 164 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 223
Query: 195 CPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253
A I LG L ++ +A A+ RAL L P + LA + E I
Sbjct: 224 FLDAYINLGNVLKEARI--FDRAVAAYLRALSLSPNHAVVHGNLACVYY---EQGLIDLA 278
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
++ +RA E+ P+ A LAN G E TAL + PT + S NLA
Sbjct: 279 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLAN 335
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+G+ E+A Y +++ EF + L V + G + AL ++++ + I P
Sbjct: 336 IKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433
+ +G+ ++ ++ A + +A +I+P A A + N+
Sbjct: 393 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS---------------NLAS 437
Query: 434 IHFEKGEFESAHQSFKDAL 452
IH + G A S++ AL
Sbjct: 438 IHKDSGNIPEAIASYRTAL 456
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.997 | 0.973 | 0.798 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.991 | 0.970 | 0.787 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.983 | 0.964 | 0.793 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.981 | 0.972 | 0.791 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.966 | 0.974 | 0.814 | 0.0 | |
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.972 | 0.972 | 0.784 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.958 | 0.972 | 0.773 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.981 | 0.957 | 0.737 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.955 | 0.962 | 0.716 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.959 | 0.916 | 0.689 | 0.0 |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1743 bits (4515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 873/1093 (79%), Positives = 968/1093 (88%), Gaps = 31/1093 (2%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHE STWVGKGQLLLAKG+VEQA +AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV+P CP A+R+GIGLC YKLGQ KAR+AFQR LQLDPENVEALVAL +M
Sbjct: 181 SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL N+A+GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE NKPH+F+ PYYGLGQVQLKLGDFRS
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------- 412
+L+NFEKVLE+YP+NCE LKALGHIYVQLGQ EKAQE LRKA KIDPRDAQA
Sbjct: 361 SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420
Query: 413 ---------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
R LLKK GEEVPIE+LNNIGV++FE+GEFE A Q+FK+A+GDGIW
Sbjct: 421 ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
L+ +D K +Y DA SM FKDMQLFH+ E DG+ VELPWNKVTVLFNLARLLEQ+++
Sbjct: 481 LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
T AS+LYRLILFK+ DY+DAYLRLAAIAKARNN+QLSIELV +ALKVN K PN+L MLG
Sbjct: 541 TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
DLELKNDDWVKAKETFR+ASDATDGKDSYATLSLGNWNYFAA+R+EKRAPKLEATHLEKA
Sbjct: 601 DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYTRV+VQH +NLYAANGAGVVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 661 KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNFALA+KMYQNCLRKFYYNTD+Q+LLYLARTHYEAEQWQDCKK+LLRAIHLA
Sbjct: 721 AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAEL+NAVR+FS LSAASNLH HGF
Sbjct: 781 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGF 840
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKI THV YCKHLL+AAK+H EAAEREE QNR R E ARQ LAEEARRKAEEQ+K+
Sbjct: 841 DEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQ 900
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
LE+RK EDE KR+ QQE+HF+RVKEQW+S+ SKR+ERS+ DDDE G SE+RRRKGGKR
Sbjct: 901 LERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDDEGGQSERRRRKGGKR 960
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 997
RKKDK S Y++E A AD MD ++E EDED +MN+RE QMN+QDDD E++A D LAA
Sbjct: 961 RKKDK---SRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQDDDGEDDAQDLLAA 1017
Query: 998 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ-----LRDNTDELQDSDGELREN 1052
AGLEDSD +D+MA + RR+RA SESD+DEP +++ +R+N+ E+Q+SDGE++++
Sbjct: 1018 AGLEDSDAEDDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVRENSAEVQESDGEIKDD 1077
Query: 1053 DHKSNGGAALDDD 1065
+ K NG AA DD+
Sbjct: 1078 NDKPNGDAAEDDE 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1730 bits (4481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/1094 (78%), Positives = 962/1094 (87%), Gaps = 38/1094 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++Q+R
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ D DNVPALLGQACVEFNRGR+SD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKR LQV+P+CP A+RLGIGLCRYKLGQ KA+QAF+R LQLDPENVE+L+ALA+M
Sbjct: 181 SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ--------- 411
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQ
Sbjct: 361 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420
Query: 412 --------------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
A TL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 421 ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
L+ ++ + K+ IDA+ S LQFKDMQLFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 481 LSFINEENKS-SIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYD 539
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
+ AS+ YRLILFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 540 SGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 599
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
+LELKNDDWVKAKET R ASDATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 600 ELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKA 659
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KEL TRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 660 KELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 719
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 720 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 779
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 780 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 839
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKI+THV YC HLL AAK+H EAAE EEQQ RQRQE ARQ ALAEEARRKAEEQ+K+
Sbjct: 840 DEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQ 899
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
+E+RK EDE KR+++QEEHF+RVKEQW+SS+ SKRRERS DD+E G EK+R+KGGKR
Sbjct: 900 MERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGTGEKKRKKGGKR 956
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENANDRLA 996
RKKDK S+ Y+ E E D+MD + EDE+A +NYR EP QMN DD EENA LA
Sbjct: 957 RKKDKHSKLRYDAEEPEDDLMD-EQGMEDEEADINYREEPQTQMN---DDAEENAQGLLA 1012
Query: 997 AAGLEDSDVDDEM-APSITAARRRRALSESDDDEP-FERQ---LRDNTDELQDSDGELRE 1051
AAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ +R N+ ++Q SDGE+R+
Sbjct: 1013 AAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRD 1072
Query: 1052 NDHKSNGGAALDDD 1065
D K+NG D++
Sbjct: 1073 GD-KTNGDDGNDEE 1085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1716 bits (4443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/1087 (79%), Positives = 962/1087 (88%), Gaps = 40/1087 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWL+IAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEID+YYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRAL V+P CP A+RLGIGLCRYKLGQ KA+QAF+R LDPENVEALVALA+M
Sbjct: 181 SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------- 412
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQA
Sbjct: 358 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417
Query: 413 ---------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
RTL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 418 ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
L+ ++ + K+ IDA+ S LQFKDM+LFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 478 LSFINEEKKS-SIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLND 536
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
+ AS+LYRL+LFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 537 SGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 596
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
+LELKNDDWVKAKET RAASDAT+GKDSYA+LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 597 ELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKA 656
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYTRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 657 KELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 716
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 717 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 776
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYTLRFDAGVAMQKFSASTLQK +RTADEVR+TVAEL+NAVRVFS LSAASNLH+HGF
Sbjct: 777 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRATVAELQNAVRVFSQLSAASNLHIHGF 836
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKI+THV YC HLL AAK+H EAAEREEQQ RQRQE ARQ A AEEARRKAEEQ+K+
Sbjct: 837 DEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQ 896
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
+E+RK EDE KR++QQEEHF+RVKEQW+SS+ SKRRERS +D++ G EK+R+KGGKR
Sbjct: 897 MERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS-DDEEGGGTGEKKRKKGGKR 954
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENANDRLA 996
RKKDK S+S Y+TE E + M +E EDE+A +NYR EP QMN DD EENA LA
Sbjct: 955 RKKDKHSKSRYDTEEPE-NDMMDEQEMEDEEADINYREEPQTQMN---DDAEENAQGLLA 1010
Query: 997 AAGLEDSDVDDEM-APSITAARRRRALSESDDDEPF-ERQ---LRDNTDELQDSDGELRE 1051
AAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ R+N+ ++Q SDGE+R+
Sbjct: 1011 AAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRD 1070
Query: 1052 NDHKSNG 1058
D K+NG
Sbjct: 1071 GD-KTNG 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1714 bits (4439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1079 (79%), Positives = 943/1079 (87%), Gaps = 34/1079 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A+RLGIGLCRY+L Q GKA+QAF+R LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 238 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 298 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------- 412
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQA
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417
Query: 413 ---------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 418 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 478 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 538 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
+LELKNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 598 ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 718 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 837
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 838 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 897
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRRKGGKR
Sbjct: 898 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 956
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 997
RKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N D LA
Sbjct: 957 RKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAE 1015
Query: 998 AGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELR 1050
AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 1016 AGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1702 bits (4407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1057 (81%), Positives = 940/1057 (88%), Gaps = 28/1057 (2%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS EIDEYYADVRYERIAILNALG YY+YLGK+ETKQREKEE+FI AT++YNKA
Sbjct: 61 QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AF+IVLE DRDNV ALLGQACVE++RG Y +
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL +KRALQV+P CPGA+RLGIG C YKLG +GKA AFQR LDPENVEALV+LA++
Sbjct: 181 SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NEAA IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYE A YY ASVKEINKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------- 412
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKAAKIDPRDAQA
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417
Query: 413 ---------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
R+LLKK GEEVPIEVLNNI VIHFE+ E E A Q+FK+ALGDGIW
Sbjct: 418 ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
LT L+ K TY +DA++S+LQ+KDMQ+F R E +G+ VEL WNKVT LFNLARLLEQ+H+
Sbjct: 478 LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
T AS LYRLILFKY DYVDAYLRLAAIAKARNNL LSIELVNEAL VN K PNALSMLG
Sbjct: 538 TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
DLELKNDDWVKAKETFRAAS+ATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 598 DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLFTQVQEAASGS+FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNFALA+KMYQNCL+KF+YNTD+QILLYLARTHYEAEQWQDCK++LLRAIHL
Sbjct: 718 AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYTLRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSAASNL+ +GF
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGF 837
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKINTHVEYCKHLL+AA +HREAAEREEQQNRQR + ARQ ALAEEARRKAEEQ+K+
Sbjct: 838 DEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQ 897
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
LE+RK EDE KR+RQQEEHF+RVKEQW+SST ASKRR+R++ DD E GH EKRRRKGGKR
Sbjct: 898 LERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKR 957
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 997
RKK+KSSRS YE E EADMMD +EPED+DA++N+REP QMNDQDD+ EENA D LAA
Sbjct: 958 RKKEKSSRSRYEME--EADMMDDHDEPEDDDANVNFREPGYQMNDQDDNAEENAQDVLAA 1015
Query: 998 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ 1034
AGLEDSD DD+ A +A RR+RA SESD+DE ER+
Sbjct: 1016 AGLEDSDADDDAAAPSSAGRRKRAWSESDEDEISERK 1052
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1674 bits (4336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1093 (78%), Positives = 940/1093 (86%), Gaps = 57/1093 (5%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+Y+RIAILNALG YY+YLGKIETKQREKEE+FI AT+YYNKA
Sbjct: 61 QILEEGSSNDIDEYYADVKYDRIAILNALGAYYSYLGKIETKQREKEEYFIQATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE+EQA +AFKIVLE DRDNV ALLGQACVE+NR Y++
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIEQAYNAFKIVLEGDRDNVSALLGQACVEYNRSHYNE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQVHP CPG+ LDPENVEALV+LA++
Sbjct: 181 SLKSYKRALQVHPECPGS---------------------------LDPENVEALVSLAIL 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NE GIR+GME MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 214 DLQTNEVNGIRRGMESMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYE A YY ASVKE NKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYETASRYYWASVKETNKPSEFVFPYYGLGQVQLKLGEIKN 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ--------- 411
AL+NFEKVLE+YPDNCETLK LGHIY QLGQ EKAQE LRKA KIDPRDAQ
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYAQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 393
Query: 412 --------------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
AR+LLKK G EVP+EVLNNIGVI+FE+ E E A ++FK+A+GDGIW
Sbjct: 394 ISSDTGAALDALKTARSLLKKGGHEVPVEVLNNIGVIYFEREELELALETFKEAVGDGIW 453
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
L LD K KTY IDA+AS+L +KDMQ FH+ E DG+ VEL W+KVT LFNLARLLEQ+H+
Sbjct: 454 LAFLDGKAKTYTIDAAASILHYKDMQFFHQLEQDGHRVELTWDKVTALFNLARLLEQMHN 513
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
A+VLY LILFKY DYVDAYLRLAAI+KARNNLQLSIELVNEALKVN K PNALSMLG
Sbjct: 514 IETANVLYVLILFKYPDYVDAYLRLAAISKARNNLQLSIELVNEALKVNDKCPNALSMLG 573
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
DLELKNDDWVKAKETFRAAS+ATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 574 DLELKNDDWVKAKETFRAASEATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKA 633
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLF +VQEAASGS+FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFMEVQEAASGSIFVQMPDVWINL 693
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNFALA+KMYQNCLRKFYY+TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFALAVKMYQNCLRKFYYSTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA 753
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNY LRFDAGVAMQKFSASTLQKT+RT DEVRSTV ELENAVR+FS LSA+SNLH HGF
Sbjct: 754 PSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRSTVDELENAVRLFSQLSASSNLHFHGF 813
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKINTHVEYCKHLL+AAK+HREAAEREEQQNRQRQE ARQ ALAEEARRKAEEQKK+L
Sbjct: 814 DEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMALAEEARRKAEEQKKFL 873
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
LEKRK EDE KR+RQQEEHF+RVKEQW++STP SKRR+RSE D++E GHSEKRRRKGGKR
Sbjct: 874 LEKRKQEDELKRVRQQEEHFERVKEQWKTSTPGSKRRDRSEVDEEEGGHSEKRRRKGGKR 933
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 997
RKK+KSS+S YE E EADMMD REE EDEDA++NY E ++++QD+D EENA D LAA
Sbjct: 934 RKKEKSSKSRYEIEEGEADMMDDREELEDEDANVNYGEHKNRLDNQDEDAEENAQDLLAA 993
Query: 998 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELREN 1052
AGLEDSD +D APS T ARRRRALSESDDDE + +L R N+ ELQ+SDGE+RE
Sbjct: 994 AGLEDSDAED-AAPSST-ARRRRALSESDDDEVLDSKLQSSPVRGNSAELQESDGEIREG 1051
Query: 1053 DHKSNGGAALDDD 1065
K G AA DD+
Sbjct: 1052 ADKQYGDAAFDDE 1064
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1664 bits (4309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1079 (77%), Positives = 920/1079 (85%), Gaps = 58/1079 (5%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAA---------------------------LDPENVEALVGLAII 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 214 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-------- 412
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQA
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 393
Query: 413 ---------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 394 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 453
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 454 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 513
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 514 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 573
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
+LE KNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 574 ELEXKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 633
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 693
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 753
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEVRSTVAELENAVRVFS LSAASNLH HGF
Sbjct: 754 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGF 813
Query: 818 DEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
DEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+EQ+K+
Sbjct: 814 DEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQ 873
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKR 937
LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRRKGGKR
Sbjct: 874 LERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKR 932
Query: 938 RKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 997
RKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N D LA
Sbjct: 933 RKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQDALAE 991
Query: 998 AGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDGELR 1050
AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSDGE+R
Sbjct: 992 AGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1050
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1590 bits (4118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 795/1078 (73%), Positives = 913/1078 (84%), Gaps = 33/1078 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA------- 412
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQA
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 413 ----------------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 456
RTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 457 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 516
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 517 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 636
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 637 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 696
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 697 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 756
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 757 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 816
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 838
Query: 817 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 876
FD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 839 FDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKY 898
Query: 877 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGG 935
LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGG
Sbjct: 899 QLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGG 958
Query: 936 KRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 993
KRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 959 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHD 1018
Query: 994 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1048
LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1019 LLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1537 bits (3980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/1078 (71%), Positives = 887/1078 (82%), Gaps = 60/1078 (5%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FILAT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKHREKEEQFILATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL YKRALQV P CP A LDP+NVEALVAL +M
Sbjct: 181 SLNLYKRALQVFPGCPAA---------------------------LDPDNVEALVALGIM 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 214 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGDYEKAG+YYMA++KE NKP EF+FPY+GLGQVQLKLG+ +
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELK 333
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ-------- 411
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ +KA E +RKA K+DPRDAQ
Sbjct: 334 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNDKALEYMRKATKLDPRDAQAFVGLGEL 393
Query: 412 ---------------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 456
ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA +FK+ALGDGI
Sbjct: 394 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALDNFKEALGDGI 453
Query: 457 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 516
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQ+H
Sbjct: 454 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQLH 511
Query: 517 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576
T AA+ LY+LILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 512 KTEAATFLYQLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 571
Query: 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 636
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 572 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 631
Query: 637 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 696
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 632 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 691
Query: 697 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 756
LAHVYFAQGNFALA+KMYQNCLRKF+ NTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 692 LAHVYFAQGNFALAVKMYQNCLRKFFNNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 751
Query: 757 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHG 816
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HG
Sbjct: 752 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHG 811
Query: 817 FDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKY 876
FD KKI THV+YC HLL+AAK+HREAAEREE QNRQR E ARQAALAEEARRKAEEQ+KY
Sbjct: 812 FDSKKIQTHVQYCSHLLEAAKVHREAAEREELQNRQRLEVARQAALAEEARRKAEEQRKY 871
Query: 877 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGG 935
LEKRK E+E +RL+Q+EE QR+KEQW+SSTP S KR++R E+DD E SE+RR+KGG
Sbjct: 872 QLEKRKQEEELRRLKQEEEKIQRIKEQWKSSTPGSHKRKDRVEDDDGEGKPSERRRKKGG 931
Query: 936 KRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENAND 993
KRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D
Sbjct: 932 KRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTNQEAEEPVDDDAHD 991
Query: 994 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDN---TDELQDSDGE 1048
LAAAGLED DV D+ P+ + RRRRALS SD++ + + N T E ++S+GE
Sbjct: 992 LLAAAGLEDPDVYDDEVPA-SGVRRRRALSSSDEEGELMEESQPNQSPTREKEESNGE 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1506 bits (3898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1125 (68%), Positives = 893/1125 (79%), Gaps = 103/1125 (9%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSP---------------EIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 61 QILEEGSSSGKQLYDDAASICSRIDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 120
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 121 KEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 180
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA-- 223
LGQA VEFNRGR+S+SL+ YKLGQL KARQAF R
Sbjct: 181 LGQASVEFNRGRFSESLQL-----------------------YKLGQLDKARQAFDRVLQ 217
Query: 224 ------------------------------LQLDPENVEALVALAVMDLQANEAAGIRKG 253
LQLDP+NVEALVAL +MDLQAN++ G+RKG
Sbjct: 218 ASGTGMFISSSYDIADCMRQQIVLITIILFLQLDPDNVEALVALGIMDLQANDSIGMRKG 277
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
M++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT HGPTKSHS+YNLAR
Sbjct: 278 MDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTHGPTKSHSFYNLAR 337
Query: 314 SYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
SYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+Y
Sbjct: 338 SYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVY 397
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ--------------------- 411
PDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQ
Sbjct: 398 PDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAF 457
Query: 412 --ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 469
ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K +
Sbjct: 458 KMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--L 515
Query: 470 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 529
S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLIL
Sbjct: 516 EQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLIL 575
Query: 530 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 589
FKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKA
Sbjct: 576 FKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKA 635
Query: 590 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 649
KETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH
Sbjct: 636 KETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHN 695
Query: 650 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709
SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL
Sbjct: 696 SNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFAL 755
Query: 710 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 769
+KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G
Sbjct: 756 TVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGA 815
Query: 770 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 829
MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HGFD KKI THV+YC
Sbjct: 816 VMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHGFDSKKIQTHVQYC 875
Query: 830 KHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKR 889
HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E+E +R
Sbjct: 876 SHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQEEELRR 935
Query: 890 LRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS-H 947
L+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKSSR+ H
Sbjct: 936 LKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKSSRARH 995
Query: 948 YETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1006
YE + EA MD E EDEDA+ NY RE + ++ V+++A+D LAAAGLED DVD
Sbjct: 996 YEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLEDPDVD 1055
Query: 1007 DEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1048
D+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1056 DDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1099
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1065 | ||||||
| TAIR|locus:2051592 | 1091 | ELF8 "EARLY FLOWERING 8" [Arab | 0.976 | 0.953 | 0.65 | 0.0 | |
| UNIPROTKB|G3V897 | 1173 | Ctr9 "SH2 domain binding prote | 0.971 | 0.882 | 0.307 | 1.2e-140 | |
| UNIPROTKB|E1C9K0 | 1167 | CTR9 "Uncharacterized protein" | 0.969 | 0.884 | 0.315 | 2.1e-139 | |
| UNIPROTKB|Q6PD62 | 1173 | CTR9 "RNA polymerase-associate | 0.943 | 0.856 | 0.313 | 4.4e-139 | |
| MGI|MGI:109345 | 1173 | Ctr9 "Ctr9, Paf1/RNA polymeras | 0.971 | 0.882 | 0.305 | 4.4e-139 | |
| UNIPROTKB|F1S6V3 | 1173 | CTR9 "Uncharacterized protein" | 0.967 | 0.878 | 0.309 | 1.7e-137 | |
| ZFIN|ZDB-GENE-030131-3782 | 1160 | ctr9 "Ctr9, Paf1/RNA polymeras | 0.967 | 0.887 | 0.310 | 5.2e-136 | |
| UNIPROTKB|Q4QR29 | 1157 | ctr9 "RNA polymerase-associate | 0.971 | 0.894 | 0.298 | 1.1e-133 | |
| UNIPROTKB|Q6DEU9 | 1172 | ctr9 "RNA polymerase-associate | 0.763 | 0.693 | 0.340 | 9.2e-133 | |
| UNIPROTKB|F1N4V2 | 1175 | CTR9 "Uncharacterized protein" | 0.970 | 0.88 | 0.289 | 8.1e-125 |
| TAIR|locus:2051592 ELF8 "EARLY FLOWERING 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3502 (1237.8 bits), Expect = 0., P = 0.
Identities = 702/1080 (65%), Positives = 814/1080 (75%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART----L 415
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQA L
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 416 LKKAGEEVPIEVLNNIGVIHFEKGEFE----------SAH---QSFKDALGD-----GIW 457
L + ++ + +KG E + H + F+ AL + G
Sbjct: 421 LISSDTGAALDAFKMARTL-MKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDG 479
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
+ + K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 480 IWISFLDEKENLEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHK 539
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+LG
Sbjct: 540 TEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLG 599
Query: 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 637
+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 600 ELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKA 659
Query: 638 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 697
KELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+NL
Sbjct: 660 KELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNL 719
Query: 698 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
AHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 720 AHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLT 779
Query: 758 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGF 817
PSNYT RFD G MQK S+STLQK +RTADEVRSTVAE ENAVRVF+ LSAAS+LH+HGF
Sbjct: 780 PSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRSTVAEAENAVRVFTQLSAASDLHVHGF 839
Query: 818 DEKKINTHVEYCKHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYL 877
D KKI THV+YC HLL+AAK+H +KY
Sbjct: 840 DSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQ 899
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEXXXXXXXXX 937
LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S +R+ DDD G S+
Sbjct: 900 LEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDD--GESKPSERRRKKG 957
Query: 938 XXXXXXXXXHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAA 997
Y E+ E+E A+M+ ++ D+D + N D +
Sbjct: 958 GKRRKKDKSSRARHY---------EDDEEEAATMDDHN---EVEDEDANTNYNREDEMTT 1005
Query: 998 AGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSN 1057
E+ VDD+ A + AA DD+ P R D +GEL E H ++
Sbjct: 1006 QEAEEP-VDDD-AHDLLAAAGLEDPDVDDDEVPTSGVRRRRALSSSDEEGELMEESHPNS 1063
|
|
| UNIPROTKB|G3V897 Ctr9 "SH2 domain binding protein 1 (Tetratricopeptide repeat containing), isoform CRA_a" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
Identities = 331/1078 (30%), Positives = 548/1078 (50%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ G + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ-----GAL----SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + A LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
D+Y+ L+LGN W L R + E H ++A +Y +V+ NLYA
Sbjct: 592 LKQPATQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYA 649
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
ANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+Y Q + A++MY
Sbjct: 650 ANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMY 704
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q+
Sbjct: 705 ENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRL 764
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLD 834
+ S L+ + EV + V ELE A R FS+LS + FD + C LL
Sbjct: 765 ATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLALAASEARQCSDLLS 822
Query: 835 AAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQE 894
A+ H +K L EK E+++K L Q+
Sbjct: 823 QAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK---EEQKKLLEQRA 879
Query: 895 EHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXXXXXXXXXXXXHYET 950
++ ++ K + T A+K ++R + G E +
Sbjct: 880 QYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVNDDTDDDLPISKKKKKR 938
Query: 951 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND---RLAAAGLEDSDVDD 1007
+ + ++ EE + R P G+ DD+ E R A + + +
Sbjct: 939 KGSGSEQEGEEEEGGERKKKRRRRPPKGEEGSDDDETENGPKPKKRRPPRAEKKKAPKPE 998
Query: 1008 EMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSNGGAALDDD 1065
+ PS+ + +A+ S DD E +L+ + + ++D + N A+ + D
Sbjct: 999 RLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSNSDSDDDERPNRRASSESD 1056
|
|
| UNIPROTKB|E1C9K0 CTR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 2.1e-139, Sum P(2) = 2.1e-139
Identities = 342/1084 (31%), Positives = 549/1084 (50%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ G + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ-----GAL----SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + A LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
+ D+Y+ L+LGN W L R + E H ++A +Y +V+ NLYA
Sbjct: 592 LKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDPKNLYA 649
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
ANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+Y Q + A++MY
Sbjct: 650 ANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMY 704
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
+NCLRKFY + + ++LLYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q+
Sbjct: 705 ENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRL 764
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLD 834
+ S L+ + EV + V ELE A R FS+LS + FD T C LL
Sbjct: 765 ATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLALAATEARQCSDLLS 822
Query: 835 AAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQE 894
A+ H +K L EK E+++K L Q+
Sbjct: 823 QAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK---EEQKKLLEQRA 879
Query: 895 EHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXXXXXXXXXXXXHYET 950
++ ++ K + SK ++R + G E +
Sbjct: 880 QYVEKTKNILMFTGEVEGSKEKKRGGGGGRRSKKGAGEFDEFVNDDSDEDLPMSRKKKKR 939
Query: 951 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND------RLAAAGLEDSD 1004
+ + ++ D EE E E R P Q D+ D EEN N R A + +
Sbjct: 940 KGSGSEQ-DGEEE-EGERKKKKRRRP--QKADEGSDDEENENGPRPKKRRPPKAEKKKAP 995
Query: 1005 VDDEMAPSITAARRRRALSESDDDEPFERQLR---DNTDELQDSDGELRENDHKSNGGAA 1061
+ + PS+ + +A+ S DD E +L+ D +SD + E H +
Sbjct: 996 KPERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADDGHARNSNSDSDDGEQQHSKRIVSD 1055
Query: 1062 LDDD 1065
D D
Sbjct: 1056 SDSD 1059
|
|
| UNIPROTKB|Q6PD62 CTR9 "RNA polymerase-associated protein CTR9 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1309 (465.8 bits), Expect = 4.4e-139, Sum P(2) = 4.4e-139
Identities = 329/1050 (31%), Positives = 538/1050 (51%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ G + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ-----GAL----SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + A LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
+ D+Y+ L+LGN W L R + E H ++A +Y +V+ NLYA
Sbjct: 592 LKQPSTQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYA 649
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
ANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+Y Q + A++MY
Sbjct: 650 ANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMY 704
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q+
Sbjct: 705 ENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRL 764
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLD 834
+ S L+ + EV + V ELE A R FS+LS + FD T C LL
Sbjct: 765 ATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLALAATEARQCSDLLS 822
Query: 835 AAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQE 894
A+ H +K L EK E+++K L Q+
Sbjct: 823 QAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK---EEQKKLLEQRA 879
Query: 895 EHFQRVKE--QWRSSTPASKRRERSEND---DDEVGHSEXXXXXXXXXXXXXXXXXXHYE 949
++ ++ K + T A+K ++R + G + +
Sbjct: 880 QYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKRRK 939
Query: 950 TEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND---RLAAAGLEDSDVD 1006
+E + D EE + R P G+ DD+ E R A + +
Sbjct: 940 GSGSEQEGED--EEGGERKKKKRRRHPKGEEGSDDDETENGPKPKKRRPPKAEKKKAPKP 997
Query: 1007 DEMAPSITAARRRRALSESDDDEPFERQLR 1036
+ + PS+ + +A+ S DD E +L+
Sbjct: 998 ERLPPSMKGKIKSKAIISSSDDSSDEDKLK 1027
|
|
| MGI|MGI:109345 Ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1303 (463.7 bits), Expect = 4.4e-139, Sum P(2) = 4.4e-139
Identities = 329/1078 (30%), Positives = 548/1078 (50%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ G + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ-----GAL----SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + A LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
D+Y+ L+LGN W L R + E H ++A +Y +V+ NLYA
Sbjct: 592 LKQPATQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYA 649
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
ANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+Y Q + A++MY
Sbjct: 650 ANGIGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMY 704
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q+
Sbjct: 705 ENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRL 764
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLD 834
+ S L+ + EV + V ELE A R FS+LS + FD + C LL
Sbjct: 765 ATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLALAASEARQCSDLLS 822
Query: 835 AAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQE 894
A+ H +K L EK E+++K L Q+
Sbjct: 823 QAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK---EEQKKLLEQRA 879
Query: 895 EHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXXXXXXXXXXXXHYET 950
++ ++ K + T A+K ++R + G E
Sbjct: 880 QYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVNDDTDDDLPVSKKKKRR 938
Query: 951 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND---RLAAAGLEDSDVDD 1007
+ + ++ EE + R P G+ ++++ E R A + + +
Sbjct: 939 KGSGSEQEGEEEEGGERKKKRRRRPPKGEEGSEEEETENGPKPKKRRPPRAEKKKAPKPE 998
Query: 1008 EMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSNGGAALDDD 1065
+ PS+ + +A+ S DD E +L+ + + ++D + N A+ + D
Sbjct: 999 RLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSNSDSDDDERPNRRASSESD 1056
|
|
| UNIPROTKB|F1S6V3 CTR9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 1.7e-137, Sum P(2) = 1.7e-137
Identities = 334/1078 (30%), Positives = 546/1078 (50%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ G + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ-----GAL----SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + A LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
+ D+Y+ L+LGN W L R + E H ++A +Y +V+ NLYA
Sbjct: 592 LKQPSTQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYA 649
Query: 655 ANGA--GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 712
ANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+Y Q + A++
Sbjct: 650 ANGIALGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQ 704
Query: 713 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772
MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q
Sbjct: 705 MYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQ 764
Query: 773 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 832
+ + S L+ + EV + V ELE A R FS+LS + FD T C L
Sbjct: 765 RLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLALAATEARQCSDL 822
Query: 833 LDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQ 892
L A+ H +K L EK E+++K L Q
Sbjct: 823 LSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK---EEQKKLLEQ 879
Query: 893 QEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXXXXXXXXXXXXHY 948
+ ++ ++ K + T A+K ++R + G E
Sbjct: 880 RAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVNDDTDDDLPISKKKK 938
Query: 949 ETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND---RLAAAGLEDSDV 1005
+ + ++ EE + R P G DD+ E R A + +
Sbjct: 939 RRKGSGSEPEGEEEEGGERKKKKRRRPPKGDEGSDDDETENGPKAKKRRPPRAEKKKAPK 998
Query: 1006 DDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDG--ELRENDHKSNGGAA 1061
+ + PS+ + +A+ S DD E +L+ DE G + E D + G ++
Sbjct: 999 PERLPPSMKGKIKSKAIISSSDDSSDEDKLKI-ADEGHARHGHSDSDEGDRRRKGASS 1055
|
|
| ZFIN|ZDB-GENE-030131-3782 ctr9 "Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1282 (456.3 bits), Expect = 5.2e-136, Sum P(2) = 5.2e-136
Identities = 336/1082 (31%), Positives = 549/1082 (50%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ +T Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKDLINQSTLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F+ VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFQFVLNQSTNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFGRALELNSKCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + D +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASST--FVLPFFGLGQMYVYRRDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+E L+K D +A L +
Sbjct: 361 AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKEHLKKVTVQYSDDVEAWIELAQ 420
Query: 419 AGEEVPIE-VLNNIGV---IHFEKGEFESAHQSFKDALGDGIWLTLLD-SKTKTYVIDAS 473
E+ I+ L+ G I EK + + + + LG + L + + K Y +
Sbjct: 421 ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNN-LG-ALHFRLGNLGEAKKYFL--- 475
Query: 474 ASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFK 531
AS+ R + +G H E +N VT +NLARL E + + A LY+ IL +
Sbjct: 476 ASL---------ERAKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILRE 526
Query: 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 591
+ +YVD YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++
Sbjct: 527 HPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQK 586
Query: 592 TF-RAASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 649
F R + D+Y+ L+LGN W L R + E H ++A +Y +V+ +
Sbjct: 587 KFERILKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDS 644
Query: 650 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709
NLYAANG G VLA KG F ++D+F QV+EA + ++ DVW+NLAH+Y Q +
Sbjct: 645 KNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----EISDVWLNLAHIYVEQKQYIS 699
Query: 710 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 769
A++MY+NCL+KFY + ++LLYLAR ++ + Q+CK++LLRA H+AP++ L F+ +
Sbjct: 700 AVQMYENCLKKFYKYQNTEVLLYLARALFKCGKLQECKQTLLRARHVAPNDTVLMFNVAL 759
Query: 770 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYC 829
+Q+ + L+ + V S V ELE A R FS+LS + + FD + C
Sbjct: 760 VLQRLATLVLKDEKSNLKAVLSAVKELELAHRYFSYLSKSGDKMR--FDLALAASEARQC 817
Query: 830 KHLLDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKR 889
LL A+ H ++ + R+ E+++K
Sbjct: 818 SDLLSQAQYHVARARKQDEEEKEHRAKQEQERDLLRQQIMKEQEER---KSREAEEQKKL 874
Query: 890 LRQQEEHFQRVKE--QWRSSTPASKRRERSENDDDEVGHSEXXXXXXXXXXXXXXXXXXH 947
L Q+ ++ +R + + ASK +++ + G
Sbjct: 875 LEQRAQYVERTRNLLNFEGMKEASKDKKKGGGGRRKKGGDFDEFVNDDSDEDLPIKKKKK 934
Query: 948 YETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD- 1006
TE + +++ D EE E + + R P + +D DD E + + E ++
Sbjct: 935 RRTE-SGSEVEDGGEEGEKKPRNKKRRRPNKREDDGSDDEEGGSRPKKQRKPRERKKIEK 993
Query: 1007 ---DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSNGGAALD 1063
+ M PS+ + +A+ S D E L+ D G +++ D
Sbjct: 994 PKPERMPPSLKGKIKSKAIISSSDSSSDEDGLKIAEDRNARDSGSGSDDEEAPRKRIVSD 1053
Query: 1064 DD 1065
D
Sbjct: 1054 SD 1055
|
|
| UNIPROTKB|Q4QR29 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1258 (447.9 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 322/1077 (29%), Positives = 537/1077 (49%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ N + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ--NALSA-------YGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWNKVTVL--FNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N ++V +NLARL E + + + LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNSISVTTSYNLARLYEGLCEFHESEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
+ D+Y+ L+LGN W L R + E H ++A +Y +V+ + NL+A
Sbjct: 592 LKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLFA 649
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
ANG G VLA KG ++D+F QV+EA + + DVW+NLAH+Y Q + A++MY
Sbjct: 650 ANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMY 704
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
+NCLRKFY + + ++LLYLAR ++ + Q+CK+ LL+A H+AP++ L F+ + +Q+
Sbjct: 705 ENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRL 764
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLD 834
+ L+ + V + V ELE A R F++LS + FD + C LL
Sbjct: 765 ATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVGDKMR--FDLALATSEARQCSDLLS 822
Query: 835 AAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQQE 894
A+ H +K+L R++E+++K L Q+
Sbjct: 823 QAQYHVARARKQDEEEKEMRTKQEQEKEVLRQKLLKEQEEKHL---REIEEQKKLLEQRA 879
Query: 895 EHFQRVKE----QWRSSTPASKRRERSENDDDEVGHSEXXXXXXXXXXXXXXXXXXHYET 950
++ ++ + TP K++ + +
Sbjct: 880 QYLEKTRNLLSFTGEMETPKEKKQRGGGGRRSKKNGEFEEFVNDDSDEELAPRKKKRKKG 939
Query: 951 EYAEADMMDYREEPEDEDASMNYREPIGQMN-DQDDDVEENANDRLAAAGLEDSDVDDEM 1009
+ + + +E E + R Q DDD E+ + ++ E
Sbjct: 940 GSSSGEQGEGGDEGEGGEKKKKKRRKRPQKAAGSDDDEEQTPQSKKRQPKKKEKPAKLER 999
Query: 1010 AP-SITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELRENDHKSNGGAALDDD 1065
P S+ + +A+ S +D+ E +L+ DE D + + KS D D
Sbjct: 1000 TPPSMKGKIKSKAIISSSEDDSDEDKLKI-ADEGHARDSDSDDGPRKSQKRVISDSD 1055
|
|
| UNIPROTKB|Q6DEU9 ctr9 "RNA polymerase-associated protein CTR9 homolog" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 288/845 (34%), Positives = 465/845 (55%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K+E AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV++
Sbjct: 183 LAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVLE 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 LNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFAAA--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ N + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ--NALSA-------YGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + + LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTTYNLARLYEGLCEFHESEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
+ D+Y+ L+LGN W L R + E H ++A +Y +V+ + NLYA
Sbjct: 592 LKQPSTQNDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYA 649
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
ANG G VLA KG ++D+F QV+EA + + DVW+NLAH+Y Q + A++MY
Sbjct: 650 ANGIGAVLAHKGYVREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQMY 704
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
+NCLRKFY + + ++LLYLAR ++ + Q+CK+ LL+A H+AP++ L F+ + +Q+
Sbjct: 705 ENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQILLKARHVAPNDTVLMFNVALVLQRL 764
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLD 834
+ L+ + V + V ELE A R F++LS + FD + C LL
Sbjct: 765 ATLVLKDEKSNLKAVLNAVKELELAHRYFNYLSKVGDKMR--FDLALAASEARQCSDLLS 822
Query: 835 AAKIH 839
A+ H
Sbjct: 823 QAQYH 827
|
|
| UNIPROTKB|F1N4V2 CTR9 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1171 (417.3 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 313/1082 (28%), Positives = 527/1082 (48%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGS-SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122
E +D Y D +++ L+ L YY + E + K++ AT Y A +
Sbjct: 65 EAARIDGNLD--YRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADK 122
Query: 123 IDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y +
Sbjct: 123 IIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGA 182
Query: 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
L +YK+AL+ +P CP R+ + L + R F + L+ V +V +
Sbjct: 183 LAYYKKALRTNPGCPDVQRVFLKHAFQHLLKSESDRVQFCADIILNTYCVTYIVLYILCM 242
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
+ A I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 243 INHKSADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVE 302
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +A
Sbjct: 303 AMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKENA 360
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQARTLLKK 418
FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A L +
Sbjct: 361 SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ 420
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
E+ I+ G + + +A + ++ + + +L++ + + +
Sbjct: 421 ILEQTDIQ-----GAL----SAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAK 471
Query: 479 FKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 536
+ R + + H E +N VT +NLARL E + + A LY+ IL ++ +YV
Sbjct: 472 KYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYV 531
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RA 595
D YLRL A+A+ + N + + EAL++N +P+A S++G+L L +W ++ F R
Sbjct: 532 DCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERI 591
Query: 596 ASDATDGKDSYATLSLGN-WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
D+Y+ L+LGN W L R + E H ++A +Y +V+ NLYA
Sbjct: 592 LKQPATQSDTYSMLALGNVW--LQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYA 649
Query: 655 ANGA--GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 712
ANG G VLA KG F ++D+F QV+EA + + DVW+NLAH+Y Q + A++
Sbjct: 650 ANGIALGAVLAHKGYFREARDVFAQVREATA-----DISDVWLNLAHIYVEQKQYISAVQ 704
Query: 713 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772
MY+NCLRKFY + + +++LYLAR ++ + Q+CK++LL+A H+APS+ L F+ + +Q
Sbjct: 705 MYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQ 764
Query: 773 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 832
+ + S L+ + EV + V ELE A R FS+LS + FD T C L
Sbjct: 765 RLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMR--FDLALAATEARQCSDL 822
Query: 833 LDAAKIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKYLLEKRKLEDEQKRLRQ 892
L A+ H +K L EK E+++K L Q
Sbjct: 823 LSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREK---EEQKKLLEQ 879
Query: 893 QEEHFQRVKE--QWRSSTPASKRRERSENDD--DEVGHSEXXXXXXXXXXXXXXXXXXHY 948
+ ++ ++ K + T A+K ++R + G E
Sbjct: 880 RAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKG-GEFDEFVNDDTDEDLPVSKKKK 938
Query: 949 ETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND---RLAAAGLEDSDV 1005
+ + ++ EE + R P G DD+ E R A + +
Sbjct: 939 RRKGSGSEQEGEEEEGGERKKKKRRRPPKGDEGSDDDETENGPKPKKRRPPRAEKKKAPK 998
Query: 1006 DDEMAPSITAARRRRALSESDDDEPFERQLR---DNTDELQDSDGELRENDHKSNGGAAL 1062
+ + PS+ + +A+ S DD E +L+ + S+ + E + + G ++
Sbjct: 999 PERLPPSMKGKIKSKAIISSSDDSSDEDKLKIADEGHPRNSHSNSDSDEGERRKKGASSE 1058
Query: 1063 DD 1064
D
Sbjct: 1059 SD 1060
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1065 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-20 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-19 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 7e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-13 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-11 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-08 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 4e-08 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 7e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-05 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 5e-05 | |
| PRK02603 | 172 | PRK02603, PRK02603, photosystem I assembly protein | 5e-05 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 8e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 3e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 4e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 7e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.001 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| pfam13371 | 73 | pfam13371, TPR_9, Tetratricopeptide repeat | 0.001 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.002 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.002 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.002 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.002 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.003 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.003 | |
| COG2956 | 389 | COG2956, COG2956, Predicted N-acetylglucosaminyl t | 0.003 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.003 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.004 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-23
Identities = 146/704 (20%), Positives = 242/704 (34%), Gaps = 118/704 (16%)
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
L G++E A +++ L D ++ A LG A + R+ ++ L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ L L LG + A A+++A+ L P N+ L+ALA + ++A E K + +
Sbjct: 196 LLLKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 259 RAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315
+ P Y +++ ++ E ET P + S
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNY---------EDARETLQDALKSAPEYLPALLLAGASE 305
Query: 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+ G+ E+A Y +K P+ L +QL+LG A+ L + PD+
Sbjct: 306 YQLGNLEQAYQYLNQILKYA--PN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIH 435
L LG Y+ LG EKA E L KA ++DP +A ART L G+
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL---------------GISK 407
Query: 436 FEKGEFESAHQSFKDAL---------GDGIWLTLLDSKTKTYVIDASASML-QFKDMQLF 485
+G+ A + A + L+ L S + A+ + + D
Sbjct: 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467
Query: 486 HRF-------ENDGNHVELPWNK--------VTVLFNLARLLEQIHDTVAASVLYRLILF 530
H + D + K NLAR+ Q + A + +L
Sbjct: 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527
Query: 531 KYQDYVDAYLRLAAIAKARNN----------------------------------LQLSI 556
+ A L LA + N L+ ++
Sbjct: 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKAL 587
Query: 557 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGKDSYATLSLGNW- 614
++NEA P A MLG +L D KA +F+ + D + L+
Sbjct: 588 AILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647
Query: 615 --NYFAALRNEKRAPK----------------LEATHLEKAKELYTRVIVQHTSNLYAAN 656
NY A+ + KRA + L A E AK++ + QH
Sbjct: 648 MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707
Query: 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 716
G + + + + + + + A S I L A GN A A+K +
Sbjct: 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA------IKLHRALLASGNTAEAVKTLEA 761
Query: 717 CLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760
L+ + DA + LA + + + K + AP N
Sbjct: 762 WLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-20
Identities = 131/649 (20%), Positives = 221/649 (34%), Gaps = 66/649 (10%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL-EFYKRALQVHP 193
G++ LA G+ A + L L A +G++ L E + L
Sbjct: 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDE 122
Query: 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG 253
+ L GL LGQL A++++++AL +DP ++ A + LA + L N +
Sbjct: 123 GAAELLAL-RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENR---FDEA 178
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
+ P AL + G L A+A+ P LA
Sbjct: 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR---PNNIAVLLALAT 235
Query: 314 SYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
G++E+A + A +K+ N P +Y V + ++ A + L+
Sbjct: 236 ILIEAGEFEEAEKHADALLKKAPNSP----LAHYLKALVDFQKKNYEDARETLQDALKSA 291
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL-------KKAGE---- 421
P+ L G QLG +E+A + L + K P QAR LL + E
Sbjct: 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351
Query: 422 --------EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 473
L+ +G + G+FE A + A T LD + A
Sbjct: 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA-------TELDPEN----AAAR 400
Query: 474 ASMLQFKDMQLFHR--FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 531
+ K Q + +L L + A + + K
Sbjct: 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460
Query: 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 591
D + L AI + +L + E +AL + + A + L ++++ + A +
Sbjct: 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520
Query: 592 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 651
F D K+ A L+L A L E+A + +
Sbjct: 521 RFEKVL-TIDPKNLRAILAL------AGLYLRTGNE-------EEAVAWLEKAAELNPQE 566
Query: 652 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 711
+ A KGQ + + + +AA S P+ W+ L A G+ A+
Sbjct: 567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDS-----PEAWLMLGRAQLAAGDLNKAV 621
Query: 712 KMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760
++ L + A LL LA + + + SL RA+ L P N
Sbjct: 622 SSFKKLLALQPDS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-19
Identities = 111/541 (20%), Positives = 199/541 (36%), Gaps = 63/541 (11%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143
A L+ LG YL + ++ A +Y KA+ +D + G L++G+
Sbjct: 364 AALSLLG--EAYLALGDFEK---------AAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
+A + + + D + A L G++ +L K+ + P L +
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-L 471
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G G L KAR+AF++AL ++P+ A LA +D+Q + + ++ I
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ---RFEKVLTI 528
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P A+ LA + TG E A + P + LA+ Y KG +K
Sbjct: 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKK 585
Query: 324 AGLYYMASVKEINKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A +A + E + LG+ QL GD A+++F+K+L + PD+ L L
Sbjct: 586 A----LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDP--RDAQARTLLKKAGEEVPIEVLNNI--------- 431
Y + KA L++A ++ P +AQ +
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701
Query: 432 --------GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 483
G ++ + ++ +A Q+++ AL + + S + ++
Sbjct: 702 AALGFELEGDLYLRQKDYPAAIQAYRKAL----------KRAPS-----SQNAIKLHRAL 746
Query: 484 LFHRFENDGNHVELPW-----NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 538
L + W N + LA L D A Y+ ++ K D
Sbjct: 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806
Query: 539 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 598
LA + + + ++E ALK+ P L LG L ++ + +A R A +
Sbjct: 807 LNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865
Query: 599 A 599
Sbjct: 866 I 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 7e-14
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
NL Y+ GDY++A YY ++ E++ + YY L KLG + AL ++EK
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELD--PDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LE+ PDN + LG Y +LG+ E+A E KA ++DP
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 9e-13
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 15/108 (13%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+DP +A+A N+G+ +++ G++E A ++++ AL
Sbjct: 63 LDPDNAKA---------------YYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 454
+ P + +VLNN G +G E A Q F+ AL D
Sbjct: 98 LAPNNG---------------DVLNNYGAFLCAQGRPEEAMQQFERALAD 132
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 6e-11
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G L G+ ++A ++ LE D DN A A + G+Y ++LE Y++AL+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P A +GL YKLG+ +A +A+++AL+LDP
Sbjct: 63 LDPDNAKAYYN-LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 454
+ VLNN G ++G++E A Q F+ A+ D
Sbjct: 97 NNGD---------------VLNNYGTFLCQQGKYEQAMQQFEQAIED 128
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
ALL + + G Y ++LE+Y++AL++ P + YKLG+ +A + +++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 224 LQLDPENVEALVALAVMDLQANE 246
L+LDP+N +A L + + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 18/150 (12%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ S LA + + +GD + L + + G Q++ G+F A
Sbjct: 63 NPEDLSIAKLATALYLRGD-ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEA 119
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
++ K + P + E LG QLG+ ++A+ R+A ++ P +
Sbjct: 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS---------- 169
Query: 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451
+ NN+G+ +G+ E A A
Sbjct: 170 -----IANNLGMSLLLRGDLEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 75/378 (19%), Positives = 125/378 (33%), Gaps = 70/378 (18%)
Query: 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164
+E + A Q + K ID + L L G E+A + + E + +
Sbjct: 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
L A +G+ +L A P P A + +G + G L KA +F++ L
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLL 628
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ- 283
L P++ AL+ LA A ++RA E+ P A LA +
Sbjct: 629 ALQPDSALALLLLADAYAVMKNYAKAIT---SLKRALELKPDNTEAQIGLAQLLLAAKRT 685
Query: 284 -----------------HFLVEQLTETALAVTNHGP-----TKSHSYY-------NLARS 314
E + L ++ K+ L R+
Sbjct: 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+ G+ +A A +K L ++ L D+ A+ +++ V++ PD
Sbjct: 746 LLASGNTAEAVKTLEAWLKTHPNDA---VLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 375 NCETL-------------KALGH--------------------IYVQLGQIEKAQELLRK 401
N L +AL + + V+ G+ ++A LLRK
Sbjct: 803 NAVVLNNLAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRK 862
Query: 402 AAKIDPRDAQARTLLKKA 419
A I P A R L A
Sbjct: 863 AVNIAPEAAAIRYHLALA 880
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 45/224 (20%)
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
IR+ + L + G L A++ +AL+ DP++ A +ALA+ L E
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-------- 82
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+A + + AL + + N
Sbjct: 83 ----KAEDSF---------------------------RRALTLNPNNGD---VLNNYGTF 108
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+G YE+A + ++++ P G LK GDF A + L+I P
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPAR-SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
E+L L +Y GQ + A+ L + + + A++ L +
Sbjct: 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR 211
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 42/227 (18%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
+S D KA + + L A Y +QG +E ++ L++ + E D
Sbjct: 21 SSRTTDRNKAAKIRVQL----ALGYLEQGDLEVAKENLDK--ALEHDPDDYLAY------ 68
Query: 86 LNALGVYYTYLGKIETKQREKEE-----------------------HFILATQYYNKASR 122
AL +YY LG++E + + A Q + +A
Sbjct: 69 -LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
Query: 123 IDM--HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+ + G L G+ ++A L+ D +LL A + + RG+Y D
Sbjct: 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + +R Q + ++ LGI + R LG A + QL
Sbjct: 188 ARAYLERYQQTYNQTAESLWLGIRIAR----ALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K + A +YY KA +D + G+ E+A ++ LE D DN A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ G+Y ++LE Y++AL++ P+
Sbjct: 72 YNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 60/255 (23%), Positives = 92/255 (36%), Gaps = 33/255 (12%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHF 278
+ ALQ DP + EA L + A G EK +++A + L LA +
Sbjct: 45 LKNALQKDPNDAEARFLLG----KIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
G+ V + + G + + LA Y G E A Y ++
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA--YLGLGQLELAQKSYEQALA---ID 155
Query: 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
++ GL Q+ L F A ++VL P N + L G + + LG IE A
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 399 LRKAAKIDPRDAQAR---------------------TLLKKAGEEVPIEVLNNIGVIHFE 437
RKA + P + LLKKA L ++ F+
Sbjct: 216 YRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK--ALVDFQ 273
Query: 438 KGEFESAHQSFKDAL 452
K +E A ++ +DAL
Sbjct: 274 KKNYEDARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-07
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L +G YKLG +A + +++AL+LDP+N +A LA + + + +E ++A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKA 60
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
E+ P A A L ++ G++ + E AL +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 74/378 (19%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALG 90
+ A + WL++ R G + + ++ +A+
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK----------------LLALQPDSA 635
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L + + A +A + +G QLLLA E A
Sbjct: 636 LALLLLADAYAVMKNYAK----AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 151 FKIVLEADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
K L+ + + Y +++ Y++AL+ PS AI+L L
Sbjct: 692 AKS-LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL---- 746
Query: 210 LGQLGKARQAFQRA---LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
G +A + L+ P + ALA + L + K ++ Q + P
Sbjct: 747 -LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD---KAIKHYQTVVKKAPD 802
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A+ LN NLA Y + +A
Sbjct: 803 NAVVLN-------------------------------------NLAWLYL-ELKDPRALE 824
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
Y ++K + G + ++ G+ AL K + I P+ L
Sbjct: 825 YAERALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881
Query: 387 VQLGQIEKAQELLRKAAK 404
+ G+ +A++ L K
Sbjct: 882 LATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 403
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 404 KIDP 407
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQ 218
DN AL F G Y +++E Y++AL++ P + L KLG +A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA-EAYYNLALAYLKLGKDYEEALE 59
Query: 219 AFQRALQLDP 228
++AL+LDP
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 751
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 752 RAIHLAPSNYTLRFDAGVAMQK 773
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 398 LLRKAAKIDPR 408
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ A + KA D + + GE + A +++ L +N L
Sbjct: 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110
Query: 170 CVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+GR ++++ ++RAL + + +GLC K GQ +A + +RAL+LD
Sbjct: 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTL-ENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
P+ AL+ LA + +A + A R +E+ Q
Sbjct: 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 564 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 1e-05
Identities = 48/226 (21%), Positives = 99/226 (43%), Gaps = 16/226 (7%)
Query: 759 SNYTLRFDAGVAMQKFSASTLQKT--RRTADEVRST--VAELENAVRVFSHLSAASNLHL 814
+++ R A A + A L+K ++ ADE + + + A + A
Sbjct: 1263 AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKK 1322
Query: 815 HGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA-----EEARRK 869
+ KK + K + AK EAA+ E + EAA + A A EEA++K
Sbjct: 1323 KAEEAKK---KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Query: 870 AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEK 929
A+ KK EK+K ++ +++ E ++ ++ + + A K+ + ++ +E +++
Sbjct: 1380 ADAAKKKAEEKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 930 RRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYRE 975
++K + +K D++ + E + AE E + ++A E
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 2e-05
Identities = 30/128 (23%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 833 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 888
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 889 RLRQQEEHFQRVK--EQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 946
+ + ++ + K ++ + +K+ + ++ +E +E+ ++K + +K D++ +
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 947 HYETEYAE 954
E + A+
Sbjct: 1479 AEEAKKAD 1486
|
Length = 2084 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK----PHEFIFPYYGLGQVQLKLGD 357
P + + NLA GDY++A +++ + E L ++ L LGD
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 358 FRSALTNFEKVLEIYPD 374
+ AL EK L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (110), Expect = 3e-05
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 5/259 (1%)
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKL 210
+ + + + + L + G +++LE + AL++ P+ A L + L KL
Sbjct: 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKL 72
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G+L +A + ++AL+L+ A AL + L + +E +++A + P +A
Sbjct: 73 GRLEEALELLEKALELELLPNLAE-ALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Query: 271 LNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329
LA + G + +L E AL + + + L + G YE+A
Sbjct: 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++K P + LG + LKLG + AL +EK LE+ PDN E L L + ++L
Sbjct: 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 390 GQIEKAQELLRKAAKIDPR 408
G+ E+A E L KA ++DP
Sbjct: 250 GRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-05
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP--IEVLNN 430
PD L L + +LG ++A ELL KA ++ ++ GE+ P LNN
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALEL----------ARELGEDHPETARALNN 51
Query: 431 IGVIHFEKGEFESAHQSFKDAL 452
+ ++ G+++ A + + AL
Sbjct: 52 LARLYLALGDYDEALEYLEKAL 73
|
Length = 78 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 404
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 405 IDPRDAQARTLL 416
+DP + +A +LL
Sbjct: 222 LDPANIRALSLL 233
|
Length = 287 |
| >gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKALGHIYVQLGQ 391
INK + F YY G G++ AL N+E+ L++ D L +G IY G+
Sbjct: 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE 87
Query: 392 IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF--ESAHQSFK 449
+KA E +A +++P+ A LNNI VI+ ++GE E+ Q
Sbjct: 88 HDKALEYYHQALELNPKQPSA---------------LNNIAVIYHKRGEKAEEAGDQDEA 132
Query: 450 DALGD 454
+AL D
Sbjct: 133 EALFD 137
|
Length = 172 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 291 TETALAVTNHGPTKSH--SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YY 346
T + +V G S YN A + GDY +A + A +K P+ P YY
Sbjct: 125 TPGSASVDGDGAPVSPATKLYNAALDLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYY 182
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403
LG+ GD+ A F +V++ YP + + L LG +LG ++A L++
Sbjct: 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242
Query: 404 KIDPRDAQART 414
K P A+
Sbjct: 243 KRYPGTDAAKL 253
|
Length = 262 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436
E L LG++Y +LG ++A E KA ++DP +A A N+ ++
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA---------------YYNLAAAYY 45
Query: 437 EKGEFESAHQSFKDAL 452
+ G++E A + ++ AL
Sbjct: 46 KLGKYEEALEDYEKAL 61
|
Length = 100 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
L A G Y ++L + AL +P A L +G + G+L +A + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA-LLLLGEALLRQGRLAEAAALLRAALA 59
Query: 226 LDPEN 230
DP++
Sbjct: 60 ADPDD 64
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 406 DPRDA 410
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA-GLYY 328
AL L N ++ G + + E AL + +YYNLA +Y+ G YE+A Y
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---AYYNLAAAYYKLGKYEEALEDYE 58
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
A E++ + YY LG KLG + AL +EK LE+ P+
Sbjct: 59 KA--LELDP--DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 2e-04
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG-QL 137
+ + +L L LG + + EE A + KA +D
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEE----ALELLEKALALDPDPDLAEALLALGA 139
Query: 138 LLAKGEVEQASSAFKIVLEAD---RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L G+ E+A ++ LE D + ALL + GRY ++LE ++AL+++P
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L +GL KLG+ +A + +++AL+LDP+N EAL LA++ L+ + +
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 255 EKMQRAFEIY 264
EK
Sbjct: 260 EKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 835 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 894
AA R+ +Q AA+ A A + E Q R R++
Sbjct: 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA----ASAPEAAQARERRER 133
Query: 895 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAE 954
R ++ + + D E E+R + + ++D+ + AE
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE-------AE 186
Query: 955 ADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSIT 1014
REE + + R+ Q + +++ + DR D
Sbjct: 187 RGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-----D 241
Query: 1015 AARRRRALSESDDDEPF-----------ERQLRDNTDELQDSDGELREND 1053
R R + DD E +R+ R D + + ELRE+D
Sbjct: 242 DNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 819 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 878
++ VE K K E ++ E++N+ + AA +A AEE ++KAEE KK
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 879 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH--SEKRRRKGGK 936
+++K + K+ E + E+ + K++ +E +E+ +++ +
Sbjct: 1686 DEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 937 RRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDR 994
+KK + ++ E E + + EE + E+ I + D++D+ D+
Sbjct: 1742 DKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
Length = 2084 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 3e-04
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 2/244 (0%)
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
+L AL + A+ LG+L +A + + AL+L P + A +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L + + + + +E +++A E+ +A L E L A
Sbjct: 63 LLLAL-ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ + + GDYE+A Y +++ + +E LG + LG
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 357 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTL 415
+ AL EK L++ PD+ E L LG +Y++LG+ E+A E KA ++DP +A+A
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 416 LKKA 419
L
Sbjct: 242 LALL 245
|
Length = 291 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + ++KA +++ +P + + QL KGE QA ++ ++ D D + + + +
Sbjct: 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443
Query: 173 FNRGRYSDSLEFYKRALQVHPSCP 196
+ G + S+ ++R + P P
Sbjct: 444 YKEGSIASSMATFRRCKKNFPEAP 467
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGD 357
YY+ A GDY A I F+ +P +Y LG+ GD
Sbjct: 3 YYDAALLVLKAGDYADA----------IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGD 52
Query: 358 FRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413
+ A F V++ YP + + L LG +LG EKA+ L++ K P + A+
Sbjct: 53 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 111
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 747
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 748 KSLLRAIHLAP 758
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (104), Expect = 4e-04
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 835 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK--RLRQ 892
A + R+ ++ R A RQAA+ E RKA+E KK EK+K ++ +K ++
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKK 1303
Query: 893 QEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYET-- 950
+E ++ +E ++ K E + D +E+ ++ + + +++ E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 951 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEEN 990
E AEA E + DA+ E + ++ EE+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
Length = 2084 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 837 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 894
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK--AKQA 129
Query: 895 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKD 941
+ E + ++++E + +E +++ ++K +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 840 REAAEREEQQNRQRQEAARQA-ALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 898
ER E R+ R+ L E+ +E+ + E +LE+ + L + E
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
Query: 899 RVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMM 958
+ + R E +E+ E +R + + ++ + + E ++
Sbjct: 880 NERAS--LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 959 -DYREEPEDEDASMNYREPIGQMNDQDDDVEE 989
D +E E+ S+ E N +DD EE
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 96/455 (21%), Positives = 155/455 (34%), Gaps = 66/455 (14%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436
E L Y+Q + + A L+ A + DP DA+AR LL K I+
Sbjct: 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGK---------------IYL 67
Query: 437 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 496
G++ +A + + AL G K + + A A +LQ K Q+ +
Sbjct: 68 ALGDYAAAEKELRKALSLGY------PKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDD 121
Query: 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI 556
++ L LA L + A Y L + A L LA +A A N +
Sbjct: 122 EGAAELLALRGLAYLGLGQLE--LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179
Query: 557 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY------ATLS 610
L++E L + +AL + GDL L + A +R A + +
Sbjct: 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIE 239
Query: 611 LGNWN----YFAALRNEKRAP-KLEATHL-----------EKAKELYTRVIVQHTSNLYA 654
G + + AL K+AP A +L E A+E + L A
Sbjct: 240 AGEFEEAEKHADALL--KKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
AG + G + + Q+ + A S + LA + G A+
Sbjct: 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR-----LLASIQLRLGRVDEAIATL 352
Query: 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 774
L D L L + ++ + L +A L P N A Q
Sbjct: 353 SPALGL--DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN------AAARTQ-- 402
Query: 775 SASTLQKTRRTADEVRSTVAELENAVRVFSHLSAA 809
L ++ + + +A+LE A ++ L A
Sbjct: 403 ----LGISKLSQGDPSEAIADLETAAQLDPELGRA 433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 67/377 (17%), Positives = 125/377 (33%), Gaps = 61/377 (16%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTL 415
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q L
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 416 LKKA--------------------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455
L +A +E E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID 155
Query: 456 I---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND--- 491
L+D + A +L+ + E
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 492 -GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 549
+ L N + VL LA L+E A L+ + YL+ A + +
Sbjct: 216 YRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVDFQK 274
Query: 550 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL 609
N + + E + +ALK +Y AL + G E + + +A + A
Sbjct: 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARR 333
Query: 610 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 669
L + +L +++A + + + A + G G F+
Sbjct: 334 LLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380
Query: 670 VSKDLFTQVQEAASGSV 686
+ + + E +
Sbjct: 381 KAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433
DN E LK LG+ +LG ++A E KA ++DP +A+A N+ +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---------------YYNLAL 45
Query: 434 IHFEKGE-FESAHQSFKDAL 452
+ + G+ +E A + + AL
Sbjct: 46 AYLKLGKDYEEALEDLEKAL 65
|
Length = 69 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L G+ ++A +A + L ALL +GR +++ + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 194 S 194
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ +L +R L + P P R GL +LG A + L+L P+ +
Sbjct: 6 LREEDFERALAVVERLLLLAPDDPYERRDR-GLLYAQLGCFQAALADLEYFLELCPDAPD 64
Query: 233 ALVALAVM 240
A +
Sbjct: 65 AERIREQL 72
|
Length = 73 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 61/312 (19%), Positives = 101/312 (32%), Gaps = 55/312 (17%)
Query: 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
HG +Y A + +GD ++A Y + + + ++ L D+
Sbjct: 112 EHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT--LAVELTRARLLLNRRDY 169
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
+A N +++LE+ P + E L+ Y++LG Q LL K+ + +
Sbjct: 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAAR 226
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478
++ +L + G W K +
Sbjct: 227 LEQQAWEGLLQQAR--------------DDNGSEGLKTWWKNQPRKLR------------ 260
Query: 479 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 538
N EL + A L ++ D A + L + D
Sbjct: 261 --------------NDPEL-------VVAYAERLIRLGDHDEAQEIIEDALKRQWD--PR 297
Query: 539 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 598
RL + + L I+ + LK + + P LS LG L LKN W KA E AA
Sbjct: 298 LCRLIPRLRPGDPEPL-IKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356
Query: 599 ATDGKDSYATLS 610
YA L+
Sbjct: 357 LRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFE 366
NL + GDY++A Y +++ E YY L LKLG D+ AL + E
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNLALAYLKLGKDYEEALEDLE 62
Query: 367 KVLEIYP 373
K LE+ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 37/184 (20%), Positives = 83/184 (45%), Gaps = 8/184 (4%)
Query: 780 QKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK--INTHVEYCKHLLDAAK 837
++ ++ AD + E + A + A+ +EK E K DAAK
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 838 IHREAAEREEQQNRQRQEAARQA---ALAEEARRKAEEQKKYLLEKRKLEDEQKRL---R 891
E ++ ++ ++ +E ++A A A++KA+E KK EK+K ++ +K+ +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 892 QQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 951
+ +E ++ +E ++ K E + D+ + E ++ K++ ++ ++ +
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504
Query: 952 YAEA 955
AEA
Sbjct: 1505 AAEA 1508
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 835 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 894
A ++ ++ AE +++ ++ AEEA+++AEE KK E +K E+E+K++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 895 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 930
+ ++ E+ R A E E D+ +K+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
Length = 2084 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 EVEQASSAFKIVLEADRDNVP--ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
E+E + + L+ + + LLG+A GR SD+L Y+ AL++ P I
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRA--YMALGRASDALLAYRNALRLAGDNP-EIL 193
Query: 201 LGIGLCRYKL--GQLG-KARQAFQRALQLDPENVEALVALA 238
LG+ Y Q+ KAR ++AL LDP N+ AL LA
Sbjct: 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234
|
Length = 287 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 56/307 (18%), Positives = 105/307 (34%), Gaps = 45/307 (14%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++ Y +A++ P C LG K + AL+LDP+ +
Sbjct: 138 YRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195
Query: 233 ALV------------ALAVMDL---------------QANEAAGIRKGMEKMQRAFEIYP 265
AL A A++DL QA E + K + E P
Sbjct: 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP 255
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
++ ++ N+ L ++ G + S + E A
Sbjct: 256 ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+ A E I G + G AL + K +E+ P ++ +
Sbjct: 316 AFEKALDLGKLGEKEAI-ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 445
++LG +KA+E KA K++ D ++ + +HF KGEF A
Sbjct: 375 NLELGDPDKAEEDFDKALKLNSEDP---------------DIYYHRAQLHFIKGEFAQAG 419
Query: 446 QSFKDAL 452
+ ++ ++
Sbjct: 420 KDYQKSI 426
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 24/231 (10%)
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF---EIYPYCAMALNYLANHFFFT 281
+LD E + L + ++ + ++A ++ A+ALN
Sbjct: 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341
G+H +E L + + ++ P + SY A GD +KA + ++K ++ +
Sbjct: 345 GKH--LEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
Query: 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401
YY Q+ G+F A +++K +++ PD + LG + G I + R+
Sbjct: 402 ---YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
Query: 402 AAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
K P E P +V N G + ++ +F+ A + F A+
Sbjct: 459 CKKNFP--------------EAP-DVYNYYGELLLDQNKFDEAIEKFDTAI 494
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 809 ASNLHLHGFDEKKINT-HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEAR 867
A LH + KK T K R AAERE NR+ ++ A AR
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAERE--INREARQERAAAMARARAR 379
Query: 868 RKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSEND 920
R A + KK L +E + EE + ++T A RE S+ D
Sbjct: 380 RAAVKAKKKGL-IDASPNEDT-PSENEESKGSPPQV-EATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 840 REAAEREEQQNRQRQEAARQAA-----LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 894
+E E+EEQ +R+E R+AA EEARR+ EE+ + EK K + E++ ++QE
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 895 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 938
E + K++ + A + ER + ++ ++ R K+R
Sbjct: 104 EQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 819 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 877
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 878 LEKRKLEDEQKRLRQQEEHFQRVKEQWRS 906
+ KLE +KRL QEE V E R
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAVRE 92
|
Length = 198 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 634 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 693
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 694 WINLAHVYFAQGNFALAMKMYQNCLRKFY 722
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.003
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+G KLG+ +A + +++AL+L+P N
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 53/264 (20%)
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM------QRAFE 262
Q KA F LQ DPE EA + L + E A I + + + QR
Sbjct: 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA 109
Query: 263 IYPYCAMALNYLANHFF------FTG------------QHFLV--------EQLTETALA 296
+ + +Y+A F Q L E+ + A
Sbjct: 110 LQ---QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAER 166
Query: 297 VTNHGPTK-----SHSYYNLARSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQ 350
+ G + Y LA+ + D ++A L A + I LG+
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII----LGR 222
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKA----AKI 405
V+L GD++ A+ E+VLE P+ E L+ L Y QLG+ + LR+A
Sbjct: 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282
Query: 406 DPRDAQARTLLKKAGEEVPIEVLN 429
D A + + G + L
Sbjct: 283 DAELMLADLIELQEGIDAAQAYLT 306
|
Length = 389 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 406 DP-----RDAQARTLLK--KAGEEVPI 425
DP + A+ LLK K E + I
Sbjct: 370 DPNSPLLQLNLAQALLKGGKPQEAIRI 396
|
Length = 484 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-ALQV 191
+ + L+ + +A+ K L+A +N A L A G + LQ
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198
Query: 192 HPSCPGAIRLGIGLCRYKLGQLGKAR--QAFQRALQLDPENVEALVALAVMDLQA--NEA 247
++ I L L Q Q QR L DP++VEA +ALA NEA
Sbjct: 199 QDKAAHGLQAQIEL----LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEA 254
Query: 248 A 248
A
Sbjct: 255 A 255
|
Length = 304 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV-------HPSCPGAIRLGIGLCRYKLGQLGKA 216
AL A V G Y ++LE ++AL++ HP + LG +A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPET-ARALNNLARLYLALGDYDEA 65
Query: 217 RQAFQRALQLDPE 229
+ ++AL L
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 18/241 (7%)
Query: 842 AAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRL----------- 890
A+ + ++ + +E ++ E+ ++K + +++ K K E ++KR
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Query: 891 ----RQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 946
R +EE +R + + S P +++ N E EK+R+ + K
Sbjct: 154 VEEPRDREEEKKRERVR-AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 947 HYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1006
E E D RE R+ +++ A+
Sbjct: 213 VNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSK 272
Query: 1007 DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDS--DGELRENDHKSNGGAALDD 1064
T+ R A S P + ++ LQD+ G++ N + +D
Sbjct: 273 RTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDED 332
Query: 1065 D 1065
D
Sbjct: 333 D 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.004
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.97 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.96 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.93 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.93 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.93 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.92 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.92 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.91 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.89 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.87 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.8 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.77 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.77 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.74 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.73 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.69 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.69 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.66 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.65 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.64 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.37 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.31 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.31 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.23 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.08 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.05 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.04 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.02 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.0 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.0 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.87 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.79 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.78 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.73 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.72 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.71 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.71 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.7 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.69 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.69 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.66 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.62 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.6 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.58 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.57 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.55 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.48 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.45 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.4 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.38 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.23 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.16 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.13 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.05 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.04 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.97 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.97 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.97 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.94 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.91 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.89 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.85 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.84 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.79 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.75 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.69 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.68 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.67 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.65 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.6 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.55 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.48 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.46 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.46 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.36 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.33 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.3 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.3 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.26 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.2 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.2 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.16 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.16 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 97.15 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.11 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.08 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.08 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.05 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.0 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.95 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.92 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.91 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.85 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.82 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.76 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.74 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.72 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.67 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.61 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.58 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.53 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.46 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.36 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.23 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.23 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.16 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.15 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.05 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.02 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.01 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.0 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.86 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.86 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.71 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.62 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.55 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.46 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.37 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.35 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.32 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.22 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.03 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.02 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.7 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.7 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.66 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 94.39 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.32 | |
| PF08492 | 59 | SRP72: SRP72 RNA-binding domain; InterPro: IPR0136 | 94.25 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.08 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.08 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 94.02 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.88 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.67 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 93.67 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.66 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.63 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.62 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.31 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 93.09 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.08 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.05 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.86 | |
| KOG0163 | 1259 | consensus Myosin class VI heavy chain [Cytoskeleto | 92.53 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 92.48 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.47 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.39 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.14 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 92.06 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 92.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 91.96 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 91.7 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.7 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 91.63 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.6 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.59 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.45 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 91.45 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 90.64 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.48 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 90.39 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 90.32 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 90.21 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 90.19 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.08 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 89.95 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.91 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 89.61 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 89.28 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.72 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.7 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 88.54 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 87.93 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 87.35 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.34 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.83 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 86.81 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 86.69 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 86.56 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 86.45 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 86.25 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 85.28 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 85.0 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 84.86 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.71 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 84.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.57 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 84.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.2 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 83.99 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.83 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.72 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.61 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 83.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.85 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 82.82 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 82.09 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 81.77 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 81.65 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 81.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.18 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 80.54 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 80.25 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-112 Score=947.29 Aligned_cols=976 Identities=40% Similarity=0.645 Sum_probs=862.5
Q ss_pred CceeeeccCCCcceEEEcCCCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001509 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1065)
Q Consensus 1 ~~~~~ip~~~~~e~v~i~~~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 80 (1065)
|+||+|||++++|||+||+++|| |+.||+.||+.+.+++++|+.+|..||++|++++++.+|+.++ ...+..|.+...
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~-~~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGL-IDANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhh-hcccchhcchHH
Confidence 57999999999999999999999 9999999999999999999999999999999999999999998 345566888889
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~~~ 158 (1065)
+.+.+++.||.+|..++........++..+..|+.+|+.+-.++......++..+..++..|.. +.|...|..+++.+
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988888999999999999999999999999999999888888876 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|+|+.++++.|++.+..|+|..|+.+|+.++.++|...+.+++++|.|++++|+.+.|+..|.++++++|.++.+++.||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001509 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1065)
.+.+...+...+..++..+.+++..+|.+|.+++.|++.|+..|+|..+..++..++..+...+..++.++++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999889999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 001509 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1065)
|+|++|..+|..+++.. +..++.+++++|++|+..|++..|+.+|++++...|++.+++..||.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 99999999999999843 23358899999999999999999999999999999999999999999999886 6789
Q ss_pred HHHHHHHHHHhCCCcHH-----------------------HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 395 AQELLRKAAKIDPRDAQ-----------------------ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 395 A~~~~~~al~~~p~~~~-----------------------a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
|..++.+++...|.+.. +..++...+..+|+++++|+|..++..|++..|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999988877 3344455566699999999999999999999999999999
Q ss_pred HcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001509 452 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 531 (1065)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 531 (1065)
+..+......+. ......+..||+|+++..+++++.|.+.|..++..
T Consensus 479 ~~~~~~~~n~de---------------------------------~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVANKDE---------------------------------GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhcCccc---------------------------------cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 874210000000 01224678999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC-CChHHHHh
Q 001509 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 610 (1065)
Q Consensus 532 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~~~~~ 610 (1065)
+|.++++|+++|.+....++..+|..++..++..+..+|.+|..+|.+|+...+|..|..-|..+++.... +|+|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988875443 59999999
Q ss_pred hHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Q 001509 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 690 (1065)
Q Consensus 611 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 690 (1065)
|||+ |+...+...+++..+++.+++|+++|.++|..+|.|.+|.+++|++++..|++.+|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9999 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 691 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
+++|+|+||||+.+|+|..|+++|+.|+++|...+++.++.+||++|+..|.+.+|..++.+|+++.|.++.+.||+|.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 89999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 001509 771 MQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQ-Q 849 (1065)
Q Consensus 771 ~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~-~ 849 (1065)
+++.+.++++...++++++..++.+|+.|+++|+.|+...+. +++++.+.+++++|+++++++..|..+++++.+ +
T Consensus 760 ~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~e 836 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEE 836 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999998765 789999999999999999999999988776544 4
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCchh-hhhcccCCCCCccc
Q 001509 850 NRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVG 925 (1065)
Q Consensus 850 ~~~k~---e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~ 925 (1065)
.++|+ +.+++.++.++++|++||++...+...+++++.+......+.+.+-+++|+++.... |+|..+
T Consensus 837 r~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~~~~~-------- 908 (1018)
T KOG2002|consen 837 RRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKRGDDS-------- 908 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCCCCcC--------
Confidence 44444 455566667888888888887777777777777766666778888899998776554 333222
Q ss_pred ccccccccCCcccccccCc-CccccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHhcCCCC
Q 001509 926 HSEKRRRKGGKRRKKDKSS-RSHYETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAAAGLED 1002 (1065)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 1002 (1065)
++..++||+||+|||++++ +.++..+++|.+.+++...+........+++++.+. ...+-+++++.++ ..+..++++
T Consensus 909 ~~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~~~~~~ 988 (1018)
T KOG2002|consen 909 DSDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREASEESDR 988 (1018)
T ss_pred cccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchhhccCC
Confidence 2444555566555553322 333444545667777777777776666665333222 2233344445555 888899988
Q ss_pred C-CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001509 1003 S-DVDDEMAPSITAARRRRALSESDDDEPF 1031 (1065)
Q Consensus 1003 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1065)
+ |+|.|..+++. .||++++|.|||..++
T Consensus 989 ~~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 989 PIESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred ccccccccCcccc-cccchhhccccccccc
Confidence 7 77777888888 9999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=502.18 Aligned_cols=673 Identities=18% Similarity=0.196 Sum_probs=557.0
Q ss_pred CCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchh
Q 001509 20 DQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKI 99 (1065)
Q Consensus 20 ~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~ 99 (1065)
.+.......+..++...|.+...|+.++..++..|++++|...++.++...+. ....+...+.+++..|+.
T Consensus 207 g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 277 (899)
T TIGR02917 207 GNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN---------SPLAHYLKALVDFQKKNY 277 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CchHHHHHHHHHHHhcCH
Confidence 33444444555666678888899999999999999999999999998654321 223556677777777765
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001509 100 ETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1065)
Q Consensus 100 ~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1065)
. +|+..|.+++..+|.+..+++.+|.+++..|++++|...|.+++...|.+..++..++.++...|++.
T Consensus 278 ~-----------~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 278 E-----------DARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred H-----------HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH
Confidence 5 89999999999999888888888999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHH
Q 001509 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1065)
+|+..+.+++...|.+ ..++..+|.++...|++++|+..|.+++..+|++..++..++.++...|+ +.+|+..+.+
T Consensus 347 ~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 422 (899)
T TIGR02917 347 EAIATLSPALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD---PSEAIADLET 422 (899)
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHH
Confidence 9999999999888888 66788899999999999999999999999999999999999999988888 8899999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 001509 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1065)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1065)
++...|....+...++..+...|++++|...+...+... |..+..+..+|.++...|++++|+.+|.+++. ..|
T Consensus 423 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~ 496 (899)
T TIGR02917 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ---PDNASLHNLLGAIYLGKGDLAKAREAFEKALS---IEP 496 (899)
T ss_pred HHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCC
Confidence 999988888888888888999999999999888887653 55667888889999999999999999998887 456
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
....+++.+|.++...|++++|+..|++++..+|.+..++..++.++...|++++|+.++.+++..+|.+..
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------- 568 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-------- 568 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--------
Confidence 677788888999999999999999999999888888888888999998999999999999998888887663
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH----hhhhhhhhhcccCCCCc
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHV 495 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 495 (1065)
.+..++.++...|++++|+.++++++...+... ............ ......+.....
T Consensus 569 -------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 629 (899)
T TIGR02917 569 -------PALALAQYYLGKGQLKKALAILNEAADAAPDSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLA----- 629 (899)
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 344555555566666666666655554322100 000000000000 011111111111
Q ss_pred CCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Q 001509 496 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 575 (1065)
Q Consensus 496 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 575 (1065)
..|..+.++..++.++...|++++|+.+|.+++..+|++..++..++.++...|++++|+.+++.+....|.++.++..
T Consensus 630 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 708 (899)
T TIGR02917 630 -LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708 (899)
T ss_pred -hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHH
Confidence 4566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHH
Q 001509 576 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 655 (1065)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~ 655 (1065)
+|.++...|++++|+..|.+++...|.. ..+..++.+ |... |++++|+..+.+++..+|+++.++
T Consensus 709 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999887764 566678888 8887 999999999999999999999999
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001509 656 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLAR 735 (1065)
Q Consensus 656 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~ 735 (1065)
+.+|.++...|++++|+.+|+++++..| +++.++.++|+++...|+ .+|+.+|++++.. .+.++.++..+|.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~ 845 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGW 845 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 9999999999999999999999999887 678999999999999999 8899999999988 4556778899999
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhhH
Q 001509 736 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773 (1065)
Q Consensus 736 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~~ 773 (1065)
+++..|++++|..+|++++...|.++.++++++.++..
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=499.50 Aligned_cols=656 Identities=20% Similarity=0.233 Sum_probs=486.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001509 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1065)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~ 116 (1065)
+.....+..+|..|+..|++++|+..|++++...+ ....++..++.++...|+.. +|+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---------~~~~~~~~la~~~~~~~~~~-----------~A~~~ 181 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP---------RSLYAKLGLAQLALAENRFD-----------EARAL 181 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHCCCHH-----------HHHHH
Confidence 34566788889999999999999999988866533 23456778888888887665 78888
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 001509 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1065)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1065)
+++++..+|.++.+++.+|.+++..|++++|+..|++++..+|.++.+++.++.++...|++++|...+..++...|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 260 (899)
T TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS- 260 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
..+++..|.+++..|+++.|+..|++++..+|++..++..+|.++...|+ +++|+..+.+++...|.++.++..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~ 337 (899)
T TIGR02917 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGN---LEQAYQYLNQILKYAPNSHQARRLLAS 337 (899)
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55677778888888888888888888888888887778888888888887 888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcC
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1065)
++...|++.+|...+..++... |..+..+..+|.++...|++++|+.+|.+++. ..|....+++.+|.++...|
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD---PDDPAALSLLGEAYLALGDFEKAAEYLAKATE---LDPENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhCC
Confidence 8888888888888888777653 45567778888888888888888888888776 34566677777888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~ 436 (1065)
++.+|+..|.+++...|....+...++.++...|++++|+..+.+++...|.++ .+++.+|.++.
T Consensus 412 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~ 476 (899)
T TIGR02917 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNA---------------SLHNLLGAIYL 476 (899)
T ss_pred ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc---------------HHHHHHHHHHH
Confidence 888888888888887777777777777777777777777777777777777665 35666677777
Q ss_pred HcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH----hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHH
Q 001509 437 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512 (1065)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 512 (1065)
..|++++|+.+|.+++...+.... ........... ......+..+.. ..|....++..++.++
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFP-------AAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLY 543 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCCCcHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHH
Confidence 777777777777777654331100 00000000000 011122222211 3455667777777777
Q ss_pred HHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHH
Q 001509 513 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 592 (1065)
Q Consensus 513 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 592 (1065)
...|++++|..++.+++..+|.+...+..++.++...|++++|+.++++++...|.++.+|..+|.++...|++++|+..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHH
Q 001509 593 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672 (1065)
Q Consensus 593 ~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 672 (1065)
|++++...|. +..++..+|.+ |... |++++|+..|++++..+|++..+++.++.++...|++++|+
T Consensus 624 ~~~~~~~~~~-~~~~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 624 FKKLLALQPD-SALALLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHHHhCCC-ChHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777766554 55566677777 7666 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 001509 673 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLR 752 (1065)
Q Consensus 673 ~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~k 752 (1065)
.+++.+....| .++.++..+|.++...|++++|+..|++++...|.+ .++..++.++...|++++|...+++
T Consensus 690 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 690 KIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777665 456677777777777777777777777777764332 5666777777777777777777777
Q ss_pred HHHhCCCCcchHHHHHHHhh
Q 001509 753 AIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 753 al~~~P~~~~~~~nla~~~~ 772 (1065)
++...|++..+.+++|.++.
T Consensus 762 ~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHH
Confidence 77777777777777766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=400.78 Aligned_cols=617 Identities=16% Similarity=0.168 Sum_probs=515.9
Q ss_pred CCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001509 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1065)
Q Consensus 23 ~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~ 102 (1065)
.+....+..+|+..|.+.-.++-.|...|..|+|..|+.+|..++...+.. ..+....+|.++..+|...
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~--------~aD~rIgig~Cf~kl~~~~-- 216 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC--------KADVRIGIGHCFWKLGMSE-- 216 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc--------CCCccchhhhHHHhccchh--
Confidence 344556778888999999999999999999999999999999976654321 2334556788888999877
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001509 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1065)
Q Consensus 103 ~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1065)
.|+..|.++++++|.++.+++.+|.+-+...+ +..+...+..+...+|.||.++..+|.-++..|+|.
T Consensus 217 ---------~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 217 ---------KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred ---------hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHH
Confidence 89999999999999999999999988887654 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccchHhHHHHHHH
Q 001509 180 DSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN-VEALVALAVMDLQANEAAGIRKGMEK 256 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1065)
.+..+...++...-.. ....++.+|.+|..+|+|++|..+|..++..+|++ .-.++.+|++++..|+ +..+..+
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d---le~s~~~ 364 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD---LEESKFC 364 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch---HHHHHHH
Confidence 9999999999876333 24568999999999999999999999999999998 7789999999999999 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 257 MQRAFEIYPYCAMALNYLANHFFFTG----QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1065)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1065)
|.+++...|++..+...||.+|...+ ..+.|..+..+++... |.+..+|..++.++....-+.. +.+|..++
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~~s-L~~~~~A~ 440 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---PVDSEAWLELAQLLEQTDPWAS-LDAYGNAL 440 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHhcChHHH-HHHHHHHH
Confidence 99999999999999999999999886 4566777777777664 7888999999999887666555 99999988
Q ss_pred HhcC--CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 333 KEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPD-----NCETLKALGHIYVQLGQIEKAQELLR 400 (1065)
Q Consensus 333 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1065)
..+. ..+.-+..+.++|..++..|++..|...|..++.. +++ +....+++|.++...++++.|...|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 6442 22344567889999999999999999999999876 222 23458899999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhh
Q 001509 401 KAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 480 (1065)
Q Consensus 401 ~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1065)
.++..+|...+ .+..+|++....++..+|..+++.++.
T Consensus 521 ~Ilkehp~YId---------------~ylRl~~ma~~k~~~~ea~~~lk~~l~--------------------------- 558 (1018)
T KOG2002|consen 521 SILKEHPGYID---------------AYLRLGCMARDKNNLYEASLLLKDALN--------------------------- 558 (1018)
T ss_pred HHHHHCchhHH---------------HHHHhhHHHHhccCcHHHHHHHHHHHh---------------------------
Confidence 99999999884 677888888889999999999999987
Q ss_pred hhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHH----------
Q 001509 481 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--DYVDAYLRLAAIAKA---------- 548 (1065)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~---------- 548 (1065)
.+..++.++..+|.++.....+..|..-|..++..-. .++.+.+.||.+++.
T Consensus 559 ----------------~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 559 ----------------IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ----------------cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 4556888999999999999999999988877775332 346677778887663
Q ss_pred --cCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcC
Q 001509 549 --RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 626 (1065)
Q Consensus 549 --~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~ 626 (1065)
.+.+..|+..|.+++..+|.+..+-..+|.++...|++..|+.+|.++...... ...+|+++|++ |...
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~-~~e~------- 693 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHC-YVEQ------- 693 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHH-HHHH-------
Confidence 345778999999999999999999999999999999999999999998875542 55678889999 9998
Q ss_pred hhHHhhhHHHHHHHHHHHHhhCC--cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHc
Q 001509 627 PKLEATHLEKAKELYTRVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704 (1065)
Q Consensus 627 ~~~~~~~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~ 704 (1065)
|+|-.|++.|+.+++..- +++..+..||.++.+.|.+.+|...+..++...| .++.+.||+|.+..+.
T Consensus 694 -----~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p-----~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 694 -----GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP-----SNTSVKFNLALVLKKL 763 (1018)
T ss_pred -----HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-----ccchHHhHHHHHHHHH
Confidence 999999999999998743 4788999999999999999999999999999987 6788999999887763
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 705 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 705 g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
+ +.+++. +. ..+-.+....+..+.|.++|..+-...+.
T Consensus 764 a---------~s~lr~---~k-----~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 764 A---------ESILRL---EK-----RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred H---------HHHHhc---cc-----ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 122222 11 22334555667778899999988777655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=389.54 Aligned_cols=462 Identities=20% Similarity=0.253 Sum_probs=424.0
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
.+......+.++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ..++.++
T Consensus 44 t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~ 122 (966)
T KOG4626|consen 44 THEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNL 122 (966)
T ss_pred CCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHH
Confidence 344455678889999999999999999999999999999999999999999999999999999999999998 7888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1065)
|.++...|++..|+..|+.++++.|++.++|.++|.++...|+ ...|..+|..+++++|....
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~c-------------- 185 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYC-------------- 185 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhh--------------
Confidence 9999999999999999999999999999999999999999998 89999999999999886653
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHH
Q 001509 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (1065)
+...+|..+...|+..+|..+|.+++. ..|.+..+|.++|.++...|+...|+.
T Consensus 186 -----------------------a~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 186 -----------------------ARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred -----------------------hhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHH
Confidence 444566677777888888888888887 567888999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 001509 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 443 (1065)
Q Consensus 364 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~ 443 (1065)
.|++++.++|..+++|++||.+|...+.++.|+..|.+++.+.|+.. .++.|+|++|+.+|..+-
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---------------~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---------------VAHGNLACIYYEQGLLDL 304 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch---------------hhccceEEEEeccccHHH
Confidence 99999999999999999999999999999999999999999999987 578899999999999999
Q ss_pred HHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHH
Q 001509 444 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 523 (1065)
Q Consensus 444 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 523 (1065)
|+..|+++++ ..|..+.++.++|..+...|+..+|..
T Consensus 305 AI~~Ykral~-------------------------------------------~~P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 305 AIDTYKRALE-------------------------------------------LQPNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHHHHHHHHh-------------------------------------------cCCCchHHHhHHHHHHHhccchHHHHH
Confidence 9999999998 678889999999999999999999999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCC
Q 001509 524 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 603 (1065)
Q Consensus 524 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 603 (1065)
+|.+++...|+++++.++||.++..+|.+++|..+|.+++..+|....+..+||.+|.++|++++|+.+|+.++.+.|.
T Consensus 342 cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~- 420 (966)
T KOG4626|consen 342 CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT- 420 (966)
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 604 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 604 d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
-..++..+|+. |-.. |+...|+++|.+++..+|....+..+||.+|-..|++.+|+..|+.++.+.|
T Consensus 421 fAda~~NmGnt-~ke~------------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 421 FADALSNMGNT-YKEM------------GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHhcchH-HHHh------------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 67788899999 9888 9999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHHHcCC
Q 001509 684 GSVFVQMPDVWINLAHVYFAQGN 706 (1065)
Q Consensus 684 ~~~~~~~~~~~~~lg~~~~~~g~ 706 (1065)
+.|+++.|+.+++.-..+
T Consensus 488 -----DfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 488 -----DFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred -----CCchhhhHHHHHHHHHhc
Confidence 889999999999765443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=381.00 Aligned_cols=473 Identities=21% Similarity=0.249 Sum_probs=436.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhH
Q 001509 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKE 107 (1065)
Q Consensus 28 ~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~ 107 (1065)
.++.-+...+......+.+|.-.|+.|+|.+|.+....+-..++ .+...+..++.++++..+.+
T Consensus 36 ~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~---------t~~~~llll~ai~~q~~r~d------- 99 (966)
T KOG4626|consen 36 SVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDP---------TNTERLLLLSAIFFQGSRLD------- 99 (966)
T ss_pred HHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCC---------Ccccceeeehhhhhcccchh-------
Confidence 33333333344445578999999999999999999988755533 23345667788888777665
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
.....-..+++.+|...+++-.+|.++-..|+++.|+..|..++++.|+++.+|.++|.++...|+...|..+|..
T Consensus 100 ----~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 100 ----KSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred ----hhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 5666677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
+++++|.. ..++..+|.++...|+..+|..+|.++++..|....+|..||.++..+|+ ...|+..|.++++++|+.
T Consensus 176 alqlnP~l-~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Ge---i~~aiq~y~eAvkldP~f 251 (966)
T KOG4626|consen 176 ALQLNPDL-YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGE---IWLAIQHYEEAVKLDPNF 251 (966)
T ss_pred HHhcCcch-hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcch---HHHHHHHHHHhhcCCCcc
Confidence 99999998 67789999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1065)
+.+++.||++|...+.++.|+..|.+++.. .|..+.++-++|.+|..+|..+-|+..|++++. ..|.+..++.+
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~N 325 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNN 325 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhH
Confidence 999999999999999999999999999987 478889999999999999999999999999998 67999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHH
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 427 (1065)
+|..+-..|+..+|..+|.+++...|++++++++||.+|..+|.++.|..+|.+++...|... ..
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------------aa 390 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------------AA 390 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------------hh
Confidence 999999999999999999999999999999999999999999999999999999999999887 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHH
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 507 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 507 (1065)
++|+|.+|.++|++++|+.+|+.++. +.|..+.++.+
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~Ykealr-------------------------------------------I~P~fAda~~N 427 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALR-------------------------------------------IKPTFADALSN 427 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHh-------------------------------------------cCchHHHHHHh
Confidence 89999999999999999999999998 67889999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchH
Q 001509 508 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 508 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 587 (1065)
+|..|..+|+.+.|+..|.+++..+|..++++.+||.+|...|+..+|+..|+.++++.|+.++++-++..++.-..+|.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876666554
Q ss_pred H
Q 001509 588 K 588 (1065)
Q Consensus 588 ~ 588 (1065)
.
T Consensus 508 D 508 (966)
T KOG4626|consen 508 D 508 (966)
T ss_pred c
Confidence 4
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=428.94 Aligned_cols=626 Identities=14% Similarity=0.073 Sum_probs=415.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHH
Q 001509 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1065)
Q Consensus 37 ~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~ 116 (1065)
+.+...++..+..+..+++.+.|.+.|++++..++ +++.++..++.+++..|+.. +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p---------~~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDP---------NNPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCC---------CCHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 34566688999999999999999999999977644 35678888999999999877 99999
Q ss_pred HHHHhhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001509 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1065)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1065)
+++++.++|+++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|+++
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 66788899999999999999999999888754 2333333444569999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-------------
Q 001509 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1065)
+|+..|++++..+|.+ ..+++.+|.+++..|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987654332211111000001111
Q ss_pred ----hHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001509 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1065)
Q Consensus 247 ----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1065)
...+..|...+.+.....++.......+|..+...|++++|+..+++++... |.++.+++.+|.++...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 0112233333333322222222222345778888888888888888888763 566788888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001509 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1065)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1065)
+|+.+|.+++...+..+.. ......+|.++...|++++|+..|++++..+|.++.++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 8888888888754332221 11223457778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhh
Q 001509 392 IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 471 (1065)
Q Consensus 392 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 471 (1065)
+++|+.+|++++..+|.+.. ++..++.++. .+++++|+.++..+....+.. ....
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~---------------a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~--~~~~------- 455 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTN---------------AVRGLANLYR-QQSPEKALAFIASLSASQRRS--IDDI------- 455 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH--HHHH-------
Confidence 88888888888888888764 3455566553 345677776665433221100 0000
Q ss_pred hhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCC
Q 001509 472 ASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 551 (1065)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 551 (1065)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|+
T Consensus 456 -------------------------~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 456 -------------------------ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred -------------------------HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 0001223455667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCCh---------HHHHhhHHHHHHHHHhh
Q 001509 552 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS---------YATLSLGNWNYFAALRN 622 (1065)
Q Consensus 552 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~---------~~~~~lg~~~y~~~~~~ 622 (1065)
+++|+..|++++..+|.++..++.++.++...+++++|+..+.++......... ...+.+++. +...
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~--- 586 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS--- 586 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC---
Confidence 777777777777777777777776666666667777777666654322111110 011233333 3333
Q ss_pred hhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Q 001509 623 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 702 (1065)
Q Consensus 623 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~ 702 (1065)
|++++|+.+++ .+|.++.++..+|.++...|++++|+..|++++...| +++.+++++|.+|.
T Consensus 587 ---------G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~ 648 (1157)
T PRK11447 587 ---------GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDI 648 (1157)
T ss_pred ---------CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHH
Confidence 55555555544 3455555555555555555555555555555555554 44555555555555
Q ss_pred HcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 703 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 703 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
..|++++|+..|++++.. .+.++.++..+|.++...|++++|..+|++++...|++
T Consensus 649 ~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 555555555555555544 23334455555555555555555555555555555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=429.45 Aligned_cols=598 Identities=16% Similarity=0.120 Sum_probs=473.5
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001509 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1065)
Q Consensus 82 ~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1065)
....|...+.++...++.+ .|.+.+.+++.++|+++.++..++.+++..|++++|...++++++.+|++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~ 95 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS 95 (1157)
T ss_pred HHHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC
Confidence 3455777788888888766 89999999999999999999999999999999999999999999999999
Q ss_pred HHHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 162 VPAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 162 ~~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
+.++ +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~ 175 (1157)
T PRK11447 96 NAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNA 175 (1157)
T ss_pred hHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHH
Confidence 7763 667889999999999999999999999888433333334444456999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---
Q 001509 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP--- 302 (1065)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--- 302 (1065)
.+|+++.++..++.++...|+ +++|+..+++++...+....+...........+....+...+...+...+..+
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA 252 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence 999999999999999999999 99999999999876554332221111111122223333333333322221111
Q ss_pred --------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHH
Q 001509 303 --------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1065)
Q Consensus 303 --------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1065)
........+|.++...|++++|+..|.+++. ..|....+++.+|.++...|++++|+.+|+++
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111223568999999999999999999998 45777889999999999999999999999999
Q ss_pred HHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001509 369 LEIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVI 434 (1065)
Q Consensus 369 l~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~ 434 (1065)
+..+|++.. ....+|.++...|++++|+..|++++..+|.+. .++..+|.+
T Consensus 330 l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~---------------~a~~~Lg~~ 394 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS---------------YAVLGLGDV 394 (1157)
T ss_pred HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHH
Confidence 999997642 223458889999999999999999999999987 467889999
Q ss_pred HHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHH
Q 001509 435 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 514 (1065)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 514 (1065)
+...|++++|+.+|++++. ..|.+..++..++.+|..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~-------------------------------------------~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALR-------------------------------------------MDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998 456677888899998864
Q ss_pred cCChHHHHHHHHHHHHHCCCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccc
Q 001509 515 IHDTVAASVLYRLILFKYQDY---------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 515 ~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
+++++|+.++..+....+.. ...+..+|.++...|++++|+.+|++++.++|+++.+++.++.+|...|+
T Consensus 432 -~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 -QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred -cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 67899998887654433221 34567789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhH---HhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHH
Q 001509 586 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKL---EATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 662 (1065)
Q Consensus 586 ~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 662 (1065)
+++|+..|++++...|. ++.+++.++.+ +....+........ ....+..++..+...+.. .....++..+
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~-----~~~l~~a~~l 583 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS-----DQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh-----hHHHHHHHHH
Confidence 99999999999987775 56666666644 33221111100000 001122222222222221 1345778899
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 001509 663 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 742 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~ 742 (1065)
...|++++|+.+++ ..| .++.+++.+|.+|...|++++|+..|++++.. .|.++.+++.++.+|...|+
T Consensus 584 ~~~G~~~eA~~~l~----~~p-----~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQP-----PSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHCCCHHHHHHHHH----hCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 99999999999887 344 67889999999999999999999999999998 56678899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHhhH
Q 001509 743 WQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773 (1065)
Q Consensus 743 ~~~A~~~~~kal~~~P~~~~~~~nla~~~~~ 773 (1065)
+++|+..|++++...|+++.++..+|.++..
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 9999999999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=357.98 Aligned_cols=633 Identities=11% Similarity=0.002 Sum_probs=489.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
....+..|..+...|++++|+..|+.++..+| +...++..|+.+|+..|+.. +|+.++++
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP---------~n~~~~~~LA~~yl~~g~~~-----------~A~~~~~k 103 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVP---------DNIPLTLYLAEAYRHFGHDD-----------RARLLLED 103 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHH-----------HHHHHHHH
Confidence 34668888888888999999999999987754 34668899999999999877 99999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHh
Q 001509 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~ 191 (1065)
+++.+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+....++. .+.+..
T Consensus 104 Av~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~ 177 (987)
T PRK09782 104 QLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA 177 (987)
T ss_pred HHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC
Confidence 999999998888877666 999999999999999999999999999998 666655555554 333333
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
+|.. ..+.+.++.+|..+|+++.|+..+.++++..|.+...+..|+.+|... ++ +.++.++...++ .++.+
T Consensus 178 ~~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~d~~l 249 (987)
T PRK09782 178 SPEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---TDPQS 249 (987)
T ss_pred CCCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---cCHHH
Confidence 3333 556777799999999999999999999999999999999999988873 43 666666554322 78999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHH-----------------------------HHHHHHcCCH
Q 001509 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNL-----------------------------ARSYHSKGDY 321 (1065)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l-----------------------------a~~~~~~g~~ 321 (1065)
+..++..|...|+.++|...+...-......|.....++.+ +..+...+.+
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQY 329 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999887654444434443333333 3344445555
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (1065)
+-+..+ +. ..|.... ...........+.+.++.......+...|.+...+..++....+.|++.+|..+|+.
T Consensus 330 ~~~~~~----~~---~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 330 DAAQKL----LA---TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHHHHH----hc---CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 533322 11 1222222 222222333557888888888888888899999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHc--ccchhhhcccccchhhhhhhhhH
Q 001509 402 AAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALG--DGIWLTLLDSKTKTYVIDASASM 476 (1065)
Q Consensus 402 al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~ 476 (1065)
++...++ .. .+..+...++.+|...+. ...++.+...+-. .+.|........
T Consensus 402 ~~~~~~~-~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------- 458 (987)
T PRK09782 402 RYPFQGD-AR-----------LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIA----------- 458 (987)
T ss_pred hcCCCcc-cc-----------cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhh-----------
Confidence 9886332 21 122345577888887766 3333333211100 000000000000
Q ss_pred HHhhhhhhhhhcccCCCCcCCCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHH
Q 001509 477 LQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 554 (1065)
Q Consensus 477 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 554 (1065)
.....+ ...+...|. .+.+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++
T Consensus 459 ---~~~~~~------~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 459 ---DNCPAI------VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYAT 527 (987)
T ss_pred ---hhHHHH------HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHH
Confidence 000000 011124566 88999999999998 899999999999999999854 46677888889999999
Q ss_pred HHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhH
Q 001509 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634 (1065)
Q Consensus 555 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 634 (1065)
|+..|++++...|. ...+..+|.++...|++..|..+|.+++...|. .......++.. .... |++
T Consensus 528 Ai~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~-l~~~------------Gr~ 592 (987)
T PRK09782 528 ALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ-RYIP------------GQP 592 (987)
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH-HHhC------------CCH
Confidence 99999998777555 456788999999999999999999999988765 33333334433 3344 999
Q ss_pred HHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 635 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714 (1065)
Q Consensus 635 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 714 (1065)
++|+..|++++..+|+ ..++.++|.++...|++++|+..|++++...| +++.++.++|.++...|++++|+..|
T Consensus 593 ~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 593 ELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999996 88999999999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHh
Q 001509 715 QNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 771 (1065)
Q Consensus 715 ~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~ 771 (1065)
+++++. .|.++.+++.+|.++...|++++|..+|++++.+.|++..+.+-++.+.
T Consensus 667 ~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 667 ERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 999998 5677899999999999999999999999999999999999888777653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=345.46 Aligned_cols=634 Identities=12% Similarity=0.008 Sum_probs=492.3
Q ss_pred CCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh
Q 001509 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE 100 (1065)
Q Consensus 21 ~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~ 100 (1065)
+.......+..+|..+|.+..+++.+|..|+.+|++++|+..+++++..++ ++...+..|+.+ ++
T Consensus 59 d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP---------~n~~~~~~La~i----~~-- 123 (987)
T PRK09782 59 DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP---------GDARLERSLAAI----PV-- 123 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---------ccHHHHHHHHHh----cc--
Confidence 334456677788889999999999999999999999999999999987754 233344444444 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 101 TKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1065)
Q Consensus 101 ~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1065)
+.+|+..|++++..+|.+..+++.++.. |.+.+....|+. .+.+...|......+.++.+|
T Consensus 124 ---------~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 124 ---------EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred ---------ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHH
Confidence 4489999999999999999999999998 666655555554 333333444556677779999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHH
Q 001509 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~ 251 (1065)
..+|+|++|+..+.++++..|.+ ...+..++.+|.. +++ +.|..++...++ .++.++..++..+...|+ .+
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~ 264 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KA 264 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HH
Confidence 99999999999999999999999 6778889998888 577 888888775333 788999999999999999 66
Q ss_pred HHHHHHHH---HHHhCCCCHHHHHHHHH-----------------------------HHHHcCCHHHHHHHHHHHHhccC
Q 001509 252 KGMEKMQR---AFEIYPYCAMALNYLAN-----------------------------HFFFTGQHFLVEQLTETALAVTN 299 (1065)
Q Consensus 252 ~A~~~~~~---al~~~p~~~~~~~~la~-----------------------------~~~~~g~~~~A~~~~~~al~~~~ 299 (1065)
+|...+.. +....|.+..-++.++. ++...+++..++.+ +.
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 337 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL----LA--- 337 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH----hc---
Confidence 66655554 33344555544444443 34444444433322 11
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---H
Q 001509 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---C 376 (1065)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~ 376 (1065)
..|..+. ...........+.+.+|......... ..|....++...+...+..|++.+|..+|+.++...++. .
T Consensus 338 ~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~---~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 TLPANEM-LEERYAVSVATRNKAEALRLARLLYQ---QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred CCCcchH-HHHHHhhccccCchhHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 1233332 22222233455888888888887776 557788889999999999999999999999999863332 3
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHH------------HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 001509 377 ETLKALGHIYVQLGQ---IEKAQEL------------LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~---~~~A~~~------------~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
.....++.+|...+. ..+++.+ ..+.....|........+........+.+++++|.++.. |++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 455588889888866 4444333 111111112111111111110101145789999999987 899
Q ss_pred HHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHH
Q 001509 442 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 521 (1065)
Q Consensus 442 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 521 (1065)
.+|+..|.+++.. .|.. .....+|.++...|++++|
T Consensus 493 ~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 493 GVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCHHHH
Confidence 9999999999873 3332 3466678888899999999
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCC
Q 001509 522 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 601 (1065)
Q Consensus 522 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 601 (1065)
+..|++++...|. ...++.+|.++...|++.+|..+|++++..+|.....+..++......|++++|+..|.+++...|
T Consensus 529 i~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 529 LAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 9999998776555 456788999999999999999999999999999988888877777788999999999999999888
Q ss_pred CCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 602 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 602 ~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
. ..++..+|.+ +... |++++|+..|.+++..+|+++.+++++|.++...|++++|+..|+++++.
T Consensus 608 ~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 608 S--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred C--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 6788899999 8888 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCc
Q 001509 682 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 761 (1065)
Q Consensus 682 ~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~ 761 (1065)
.| +++.+++++|.++..+|++++|+..|++++.. .+..+.+....|.+.....++..|.+.+.++..+.|...
T Consensus 673 ~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 673 LP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 98 78999999999999999999999999999998 566688999999999999999999999999999999876
Q ss_pred chHHHHH
Q 001509 762 TLRFDAG 768 (1065)
Q Consensus 762 ~~~~nla 768 (1065)
+...++
T Consensus 746 -a~~~~g 751 (987)
T PRK09782 746 -IGLRSG 751 (987)
T ss_pred -hccccc
Confidence 444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=326.99 Aligned_cols=437 Identities=16% Similarity=0.149 Sum_probs=248.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.+..+|..++..|+|++|+..|.+++...|+ +..+..+|.+|...|+|++|+..|.+++.++|++ ..+++.+|.++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 4556777777777777777777777777774 5677777777777777777777777777777777 5667777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001509 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1065)
+|++++|+..|..++..++.+......+....+ ...+...+..++...|.+...+..++.++.... ......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSFR-PKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcc-CCcchh
Confidence 777777777777666665543322111111111 122334455555666665555555544332111 111111
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 290 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
.+..... ..+.....+..++..+... ...+.+++|+..|++++
T Consensus 279 ~~~~~~~---~~~~~~~~~~~l~~~~~e~----------------------------------~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 279 GLEDSNE---LDEETGNGQLQLGLKSPES----------------------------------KADESYEEAARAFEKAL 321 (615)
T ss_pred hhhcccc---cccccccchHHHHHHHHHh----------------------------------hhhhhHHHHHHHHHHHH
Confidence 1111110 0111122222222221110 12244445555555554
Q ss_pred Hh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001509 370 EI---YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 446 (1065)
Q Consensus 370 ~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 446 (1065)
.. .|....++..+|.++...|++++|+..|++++.++|... ..+..+|.++...|++++|+.
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~---------------~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT---------------QSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHCCCHHHHHH
Confidence 43 233444455555555555555555555555555555444 234445555555555555555
Q ss_pred HHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 447 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 526 (1065)
Q Consensus 447 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 526 (1065)
.|.+++. ..|.++.+++.+|.++...|++++|+..|+
T Consensus 387 ~~~~al~-------------------------------------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 387 DFDKALK-------------------------------------------LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555544 233444555555555555555555555555
Q ss_pred HHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCCh-
Q 001509 527 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS- 605 (1065)
Q Consensus 527 ~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~- 605 (1065)
+++..+|++..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|.+++...|....
T Consensus 424 kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555443211
Q ss_pred ----HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 606 ----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 606 ----~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
..++..+.+.|... +++++|+.+|++++.++|.+..++..+|.++...|++++|+..|+++++.
T Consensus 504 ~~~~~~l~~~a~~~~~~~------------~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWK------------QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11112222213334 88999999999999999999889999999999999999999999999888
Q ss_pred hc
Q 001509 682 AS 683 (1065)
Q Consensus 682 ~p 683 (1065)
.+
T Consensus 572 ~~ 573 (615)
T TIGR00990 572 AR 573 (615)
T ss_pred hc
Confidence 75
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=326.10 Aligned_cols=438 Identities=16% Similarity=0.105 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1065)
Q Consensus 83 ~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1065)
...+..+|..|+..|++. +|+..|++++.+.|+ +..+..+|.+|+..|++++|+..|.+++..+|++.
T Consensus 127 a~~~k~~G~~~~~~~~~~-----------~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~ 194 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFN-----------KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS 194 (615)
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence 445666777777777655 999999999999995 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
.+++.+|.++...|+|++|+..|..++...+.........+...+ ...+...+..++...|.+...+..++.++.
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999998888776655222111111111 134566677777888887777777766553
Q ss_pred HccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC
Q 001509 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1065)
Q Consensus 243 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1065)
... ...+...+......+|.....+..++..+. ..+.|++|+..|+.++......|....++..+|.++...|
T Consensus 270 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 270 SFR----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred Hcc----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 221 222233344455556665555555554433 3478999999999999876556777888999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1065)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 399 (1065)
++++|+..|.+++. ..|....+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|
T Consensus 346 ~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 346 KHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999987 567778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHh
Q 001509 400 RKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 479 (1065)
Q Consensus 400 ~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1065)
++++.++|++. ..+.++|.++...|++++|+..|++++.
T Consensus 423 ~kal~l~P~~~---------------~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------- 461 (615)
T TIGR00990 423 QKSIDLDPDFI---------------FSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------- 461 (615)
T ss_pred HHHHHcCccCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------
Confidence 99999999887 4678889999999999999999999987
Q ss_pred hhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHH------HHHHHH-HHHHcCCH
Q 001509 480 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLAA-IAKARNNL 552 (1065)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a------~~~la~-~~~~~g~~ 552 (1065)
..|..+.++..+|.++...|++++|+..|.+++...|..... +...+. ++...|++
T Consensus 462 -----------------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 462 -----------------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred -----------------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 456788899999999999999999999999999988864322 222233 33446899
Q ss_pred HHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC
Q 001509 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 553 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
++|+.++++++.++|++..++..+|.++...|++++|+..|++++...+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999887554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=283.27 Aligned_cols=666 Identities=17% Similarity=0.174 Sum_probs=469.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
+..++..|+..+.+|++++|+.++.+++...+ ....++..||.+|-.+|+.+ ++....-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp---------~~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP---------RNPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---------cchhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 56778999999999999999999999987643 35678999999999999887 89999999
Q ss_pred HhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc---
Q 001509 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--- 196 (1065)
Q Consensus 120 a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--- 196 (1065)
|.-++|++...|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|++..|...|.+++...|...
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999431
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH-----------
Q 001509 197 -GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE----------- 262 (1065)
Q Consensus 197 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~----------- 262 (1065)
...-...+..+...++-+.|+..++.++.... ...+-+..++.+++.... ++.++..+.....
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 12234457778888888999999999998332 233446677777777766 7777776655544
Q ss_pred -----------hC------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 263 -----------IY------PYCAMA-LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1065)
Q Consensus 263 -----------~~------p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1065)
.. +.+..+ ...++.+....++..+++ ........-.....+..++.++.+|...|+|..|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~l--l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A 433 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEAL--LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA 433 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHH--HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 00 011122 334444444444444443 3333333222346788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.+|..++.... .....+|+.+|.||..+|.++.|+.+|++++...|++.++...|+.++.++|++++|.+.+.....
T Consensus 434 l~~l~~i~~~~~--~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 434 LRLLSPITNREG--YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHhcCcc--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999986422 233568999999999999999999999999999999999999999999999999999999998774
Q ss_pred hCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchh---hhhh--------h
Q 001509 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY---VIDA--------S 473 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~--------~ 473 (1065)
-++.+..+. .-.....+......+++..|+.++=+......+................ .+.. .
T Consensus 512 ~D~~~~e~~------a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~ 585 (895)
T KOG2076|consen 512 PDGRNAEAC------AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSEL 585 (895)
T ss_pred CCccchhhc------cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchh
Confidence 443332211 1111125678889999999999886665555554322111111100000 0000 0
Q ss_pred hhHH----Hh-hh-hhhhhhcccC--CCCcCCCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh--H---
Q 001509 474 ASML----QF-KD-MQLFHRFEND--GNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--V--- 536 (1065)
Q Consensus 474 ~~~~----~~-~~-~~~~~~l~~~--~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~--- 536 (1065)
.+.+ .. .+ ...-..+... .......... ......+..++.+.+++.+|+.+...++....-. .
T Consensus 586 ~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~ 665 (895)
T KOG2076|consen 586 LKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR 665 (895)
T ss_pred HHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH
Confidence 0000 00 00 0000000000 0000011111 2344456677888999999999888887643211 1
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHh
Q 001509 537 -DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 610 (1065)
Q Consensus 537 -~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~ 610 (1065)
...+....+.+..+++..|..+++.++.. +|....+|+..-.+....++-.--...+..++...+..++...+.
T Consensus 666 k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i 745 (895)
T KOG2076|consen 666 KELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeee
Confidence 23333445567788999999999998887 565556666444444444544444444555555555544555555
Q ss_pred hHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcC----------CcHHHHHHHHHHHH
Q 001509 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG----------QFDVSKDLFTQVQE 680 (1065)
Q Consensus 611 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g----------~~~~A~~~~~~~~~ 680 (1065)
.|.. .+.. +.+.-|+..|-++...+|++|..-..+|..+.... ..-+++..+.+..+
T Consensus 746 ~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~ 812 (895)
T KOG2076|consen 746 YGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE 812 (895)
T ss_pred echh-Hhhc------------cchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 6666 6666 88999999999999999999888777777666531 34556666666655
Q ss_pred HhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--------Cc--HHHHHHHHHHHHHhhcHHHHHHHH
Q 001509 681 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--------TD--AQILLYLARTHYEAEQWQDCKKSL 750 (1065)
Q Consensus 681 ~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~~--~~~~~~lg~~~~~~g~~~~A~~~~ 750 (1065)
+.... +...+.+|+|.+|...|-..-|+.+|+++|...|.+ .+ ..+.++|..+|..+|+...|.+++
T Consensus 813 lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 813 LRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred hhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHH
Confidence 54322 356899999999999999999999999999874321 11 678888999999999999999888
Q ss_pred HHHH
Q 001509 751 LRAI 754 (1065)
Q Consensus 751 ~kal 754 (1065)
.+-+
T Consensus 890 ~kyl 893 (895)
T KOG2076|consen 890 EKYL 893 (895)
T ss_pred Hhhc
Confidence 7643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-27 Score=250.80 Aligned_cols=563 Identities=15% Similarity=0.137 Sum_probs=475.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
++..+|..++....+.+|.+|..|+.-+.+--..|++..|..+..+-.+..|.+...|+.-+ +....+.|..+.-.
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHHH
Confidence 46779999999999999999999999999999999999999998888888888877776543 33344445555555
Q ss_pred HHHhCCCCchHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 188 ALQVHPSCPGAIRLGI---------------------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 188 al~~~p~~~~~~~~~l---------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
+++..|.+ ..+|+.. =.....+.+.+.|+..+.++++..|.+.+.|..|+.+
T Consensus 341 Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlarL 419 (913)
T KOG0495|consen 341 AVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALARL 419 (913)
T ss_pred HHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 55555544 2222211 1223345567779999999999999999999888876
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHc
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~ 318 (1065)
.. |..|...++++-+.-|.++.+|..-+.+--.+|+.+.+.+++.+.+..... ...+...|+.-+..+...
T Consensus 420 et-------YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 420 ET-------YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HH-------HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 43 888999999999999999999999999999999999999999988864322 234567888889989888
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
|-.-.+.......+...-...+.-..|+.-++.+.+.+.++-|+.+|..+++.+|....+|...+..-...|..+.-..+
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 98888888877777655556667778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH
Q 001509 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478 (1065)
Q Consensus 399 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1065)
|++++...|... .+|...+..+...|+...|..++..+++
T Consensus 573 lqkav~~~pkae---------------~lwlM~ake~w~agdv~~ar~il~~af~------------------------- 612 (913)
T KOG0495|consen 573 LQKAVEQCPKAE---------------ILWLMYAKEKWKAGDVPAARVILDQAFE------------------------- 612 (913)
T ss_pred HHHHHHhCCcch---------------hHHHHHHHHHHhcCCcHHHHHHHHHHHH-------------------------
Confidence 999999999876 4677778889999999999999999988
Q ss_pred hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 479 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 558 (1065)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 558 (1065)
..|+...+|+.-..+.....+++.|..+|.++....|. ...|+.-+.+...+++.++|+.+
T Consensus 613 ------------------~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 613 ------------------ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred ------------------hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence 56778889999999999999999999999999987776 77888888999999999999999
Q ss_pred HHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHH
Q 001509 559 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 638 (1065)
Q Consensus 559 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~ 638 (1065)
++.+++..|....+|..+|.++..+++.+.|...|...+...|. .+..|+.|+.+ -... |...+|.
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakl-eEk~------------~~~~rAR 739 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKL-EEKD------------GQLVRAR 739 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHH-HHHh------------cchhhHH
Confidence 99999999999999999999999999999999999999998887 66777778877 4444 8899999
Q ss_pred HHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 639 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718 (1065)
Q Consensus 639 ~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 718 (1065)
.++.++.-.+|.++..|.....+-.+.|+.+.|..++.++++..|+ +...|..-.+..-.-++-..++..+.+|
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-----sg~LWaEaI~le~~~~rkTks~DALkkc- 813 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-----SGLLWAEAIWLEPRPQRKTKSIDALKKC- 813 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----cchhHHHHHHhccCcccchHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999984 4556666556555556655555554443
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHH
Q 001509 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 766 (1065)
Q Consensus 719 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~n 766 (1065)
..++.++..+|..++...+++.|+.+|.++++++|++..++-+
T Consensus 814 -----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 814 -----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred -----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 4567899999999999999999999999999999999888833
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-27 Score=297.63 Aligned_cols=627 Identities=14% Similarity=0.057 Sum_probs=414.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhh-------------
Q 001509 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET------------- 101 (1065)
Q Consensus 35 ~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~------------- 101 (1065)
..+++...+..+...|.+.|++++|+.+|..+......+ ....+..+...+...+....
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 117 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC
Confidence 445667778888899999999999999999886642211 01122222222222222220
Q ss_pred -----------hhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001509 102 -----------KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQA 169 (1065)
Q Consensus 102 -----------~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la 169 (1065)
..--+.|++..|..+|.++. +.+..+|..+...|...|++++|+..|.++.... ..+..++..+.
T Consensus 118 ~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll 194 (857)
T PLN03077 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194 (857)
T ss_pred CCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 00001122225555555543 2244555556666666666666666666554421 11233333334
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHh
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1065)
..+...+++..+.+++..+++........++..+..+|.+.|+++.|...|+++.. .+...|..+...+.+.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~--- 268 (857)
T PLN03077 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE--- 268 (857)
T ss_pred HHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---
Confidence 44445555555555555555543222234455666667777777777777776432 244556666667777766
Q ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1065)
+.+|+..|.++.... ..+...+..+...+...|+.+.+.+++..+.... ...+..++..+...|.+.|++++|..+|
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 777777777766542 1244555666666667777777777776666543 2334566777777777777777777777
Q ss_pred HHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
..+.. + ....|..+...|.+.|++++|+.+|..+... .|+ ..++..+-..+...|+++.|..++..+.+..
T Consensus 347 ~~m~~-----~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 347 SRMET-----K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred hhCCC-----C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 66531 2 2345666777777777777777777766543 243 3444455556667777777777777666543
Q ss_pred CCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001509 407 PRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 486 (1065)
Q Consensus 407 p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1065)
.... ..+++.+...|.+.|++++|..+|.++..
T Consensus 420 ~~~~--------------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 420 LISY--------------VVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred CCcc--------------hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 3221 24677777888888888888888876532
Q ss_pred hcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q 001509 487 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 566 (1065)
Q Consensus 487 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 566 (1065)
.+..+|..+...|...|+..+|+.+|.+++...+.+..++..+...+...|+.+.+..++..++...
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 1445677788888888888888888888876555556677777777888888888888888887764
Q ss_pred -CCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHH
Q 001509 567 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 645 (1065)
Q Consensus 567 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 645 (1065)
..+..++..+...|.+.|+++.|...|... ..+..+|..+... |... |+.++|+.+|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 334556677888888999999999988875 3477788888888 8888 99999999999888
Q ss_pred hhCCc-chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 001509 646 VQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724 (1065)
Q Consensus 646 ~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 724 (1065)
..... |...+..+...+.+.|.+++|..+|+.+.+..+-. .+...|..+..+|.+.|++++|...++++ +..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~---P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT---PNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 75432 45567777778888999999999999888554311 24578888999999999999999888765 346
Q ss_pred CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhh
Q 001509 725 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 725 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~ 772 (1065)
+++.+|..|-.++...|+.+.+....++++++.|++...+..++.+|.
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 677888888888888888888888899999999998888776666543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-27 Score=294.05 Aligned_cols=593 Identities=13% Similarity=0.069 Sum_probs=417.1
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Q 001509 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NV 162 (1065)
Q Consensus 85 ~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~ 162 (1065)
.++.+...|...|... +|..+|..+.... |.+..++..+...+...+.+..|...+..+++..+. +.
T Consensus 53 ~~n~~i~~l~~~g~~~-----------~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (857)
T PLN03077 53 DSNSQLRALCSHGQLE-----------QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV 121 (857)
T ss_pred hHHHHHHHHHhCCCHH-----------HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc
Confidence 5667788888888776 8999999887743 345667777777888888999999999988877654 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--DPENVEALVALAVM 240 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~ 240 (1065)
.....+...|.+.|+...|..+|.+... |+ ...|..+...|.+.|++++|+..|.++... .|+ ...+..+...
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~--~d--~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE--RD--LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD-VYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC--CC--eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Confidence 4556666778888999999988887642 32 355778888889999999999999988753 353 3334444444
Q ss_pred HHHccchHhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1065)
+...++ +..+.+.+..++... +.+..+++.|...|...|+++.|..+|+.+. ..+..+|..+...|.+.|
T Consensus 197 ~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 197 CGGIPD---LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENG 267 (857)
T ss_pred hCCccc---hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC------CCCcchhHHHHHHHHhCC
Confidence 444444 566666665555433 2345566677777777777777777776653 123456777777777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
++++|+.+|..+.... ..|+ ...+..+...+...|+.+.|.+++..+.... +.+..++..+...|.+.|++++|..+
T Consensus 268 ~~~eAl~lf~~M~~~g-~~Pd-~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 268 ECLEGLELFFTMRELS-VDPD-LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CHHHHHHHHHHHHHcC-CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777777766532 2222 2345555666666777777777777666542 22466677777777777777777777
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH
Q 001509 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478 (1065)
Q Consensus 399 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1065)
|+++.. |+ . .+|+.+...|.+.|++++|+.+|.++...+... .............
T Consensus 346 f~~m~~--~d-~---------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-------d~~t~~~ll~a~~ 400 (857)
T PLN03077 346 FSRMET--KD-A---------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSP-------DEITIASVLSACA 400 (857)
T ss_pred HhhCCC--CC-e---------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------CceeHHHHHHHHh
Confidence 776532 21 1 246666777777777777777777665432100 0000000000000
Q ss_pred -----hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHH
Q 001509 479 -----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 553 (1065)
Q Consensus 479 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 553 (1065)
.....++......+ . ..+..++..+...|.+.|++++|..+|.++.. .+..+|..+...|...|++.
T Consensus 401 ~~g~~~~a~~l~~~~~~~g----~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKG----L-ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred ccchHHHHHHHHHHHHHhC----C-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHH
Confidence 01111222211111 1 12456777888888899999999988887643 34567888888888899999
Q ss_pred HHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhh
Q 001509 554 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 633 (1065)
Q Consensus 554 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~ 633 (1065)
+|+.+|++++...+.+...+..+...+...|..+.+...+..++...-..+......|.+. |... |+
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~-y~k~------------G~ 539 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL-YVRC------------GR 539 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH-HHHc------------CC
Confidence 9999998887654445566666666778888888998888888887766677777778888 8888 99
Q ss_pred HHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 634 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 713 (1065)
Q Consensus 634 ~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 713 (1065)
.++|...|..+ +.+..+|+.+...|...|+.++|+.+|+++.+.... .+..++..+-..|.+.|.+++|..+
T Consensus 540 ~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~----Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 540 MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN----PDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCcccHHHHHHHHhhcChHHHHHHH
Confidence 99999999886 568889999999999999999999999999875421 2456777888889999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 714 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 714 ~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
|+.+.+.++-.++...+..+..++.+.|++++|...++++ ...|+
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 9999988788888999999999999999999999999886 34554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-25 Score=236.50 Aligned_cols=606 Identities=15% Similarity=0.140 Sum_probs=509.0
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHH
Q 001509 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112 (1065)
Q Consensus 33 L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~ 112 (1065)
-...|..+..|+.-|..--..|++..|..++.++.+..+.+ -.+|+..-++.. -+.
T Consensus 278 retnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS----------------eDvWLeaiRLhp--------~d~ 333 (913)
T KOG0495|consen 278 RETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS----------------EDVWLEAIRLHP--------PDV 333 (913)
T ss_pred HhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch----------------HHHHHHHHhcCC--------hHH
Confidence 34678899999999999999999999999999987765422 223333333331 125
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
|..+..++++..|+++..|+.-+.+-. +...=...+.++++..|+++..|-. .....+.+.|..++.++++..
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvecc 406 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVECC 406 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHhc
Confidence 788889999999999999998776543 3344467889999999998877654 345667777999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhC-----CCC
Q 001509 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-----PYC 267 (1065)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~ 267 (1065)
|.+ ...|+.+ .++.-|+.|...+.++-+.-|.+...|..-+.+....|+ .+.....+.+.+..- .-+
T Consensus 407 p~s-~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 407 PQS-MDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred cch-HHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeec
Confidence 998 5555544 456679999999999999999999999999999999998 666666666655422 225
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1065)
...|..-+..+-..|-.-.+..+....+...-.....-..|..-+..+...+.++-|..+|..+++.+ |..-..|..
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf---p~k~slWlr 555 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF---PCKKSLWLR 555 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc---cchhHHHHH
Confidence 67788888888888888888888888888776667778899999999999999999999999999855 455567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHH
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 427 (1065)
.+..--..|..+.-..+|++++...|.....|.+.+..+...|+...|..++..++..+|++. ++
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse---------------ei 620 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE---------------EI 620 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH---------------HH
Confidence 888888889999999999999999999999999999999999999999999999999999977 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHH
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 507 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 507 (1065)
|.....+.+...+++.|..+|.++....+ ...+|+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sg--------------------------------------------TeRv~mK 656 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISG--------------------------------------------TERVWMK 656 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCC--------------------------------------------cchhhHH
Confidence 88888899999999999999999986332 6678999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchH
Q 001509 508 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 508 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 587 (1065)
.+.+...+++.++|+.+++.+++.+|.....|+.+|+++.+.++.+.|...|...+...|..+.+|..++.+-.+.|...
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCC
Q 001509 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667 (1065)
Q Consensus 588 ~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 667 (1065)
.|...+.++.-..|. +...|+....+ -+.. |+.+.|.....++|+..|++...|..-..+.-.-++
T Consensus 737 rAR~ildrarlkNPk-~~~lwle~Ir~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 737 RARSILDRARLKNPK-NALLWLESIRM-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred hHHHHHHHHHhcCCC-cchhHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 999999999988777 55555444444 3444 999999999999999999998888777766666667
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 747 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 747 (1065)
-..+++.+.+. . .+|.+++..|.++....++++|..+|.++++..++..| ++.++-..+...|.-++-.
T Consensus 803 kTks~DALkkc----e-----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD--~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 803 KTKSIDALKKC----E-----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD--AWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred chHHHHHHHhc----c-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch--HHHHHHHHHHHhCCHHHHH
Confidence 66666555544 2 57899999999999999999999999999999655555 4555556778889999999
Q ss_pred HHHHHHHHhCCCCcchH
Q 001509 748 KSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 748 ~~~~kal~~~P~~~~~~ 764 (1065)
..|.+.....|.....+
T Consensus 872 ev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 872 EVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHhccCCCCCcHH
Confidence 99999999999998777
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-25 Score=252.58 Aligned_cols=612 Identities=14% Similarity=0.098 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1065)
Q Consensus 83 ~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1065)
+..+...|...+..|+.+ +|+.++..+++.+|.++.+|+.+|.+|-++|+.++|+.++-.+-.++|.+.
T Consensus 139 l~~ll~eAN~lfarg~~e-----------eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLE-----------EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHH-----------HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 344555566666666655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH-HHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEA-LVAL 237 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a-~~~l 237 (1065)
..|..++.....+|++..|.-+|.+|++.+|.+ ....+..+.+|.++|+...|...|.+++.++|.. ... -...
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999 6778889999999999999999999999999921 111 2233
Q ss_pred HHHHHHccchHhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Q 001509 238 AVMDLQANEAAGIRKGMEKMQRAFEIY--PYCAMALNYLANHFFFTGQHFLVEQLTETALA------------------- 296 (1065)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------------------- 296 (1065)
+..+...++ -+.|++.+..++... --....++.++.++....+++.+.........
T Consensus 287 ~~~~~~~~~---~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 287 AHYFITHNE---RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHhhH---HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 455555655 588888888888733 23446678899999999999998887766554
Q ss_pred ---cc---CCCCCchHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 297 ---VT---NHGPTKSHS-YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 297 ---~~---~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
.. ..-+....+ ...++.+....++..+++..+..--. ......+..++.++.++...|++.+|+.+|..+.
T Consensus 364 ~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~ 441 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT 441 (895)
T ss_pred ccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 10 011111222 44455555555666666555543322 1245667789999999999999999999999998
Q ss_pred HhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 370 EIYPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 448 (1065)
Q Consensus 370 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 448 (1065)
...+. +..+|+.+|.||..+|.++.|+.+|++++...|++.+ +...++.++...|+.++|++.+
T Consensus 442 ~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D---------------~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 442 NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD---------------ARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh---------------hhhhHHHHHHhcCCHHHHHHHH
Confidence 86554 4679999999999999999999999999999999985 5667799999999999999999
Q ss_pred HHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 449 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 528 (1065)
Q Consensus 449 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 528 (1065)
.....-.+.. ... + ..+....+.+....++...|+.++=+.....+
T Consensus 507 ~~~~~~D~~~--~e~---------~-----------------------a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 507 EQIINPDGRN--AEA---------C-----------------------AWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred hcccCCCccc--hhh---------c-----------------------cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8865321100 000 0 11112223333333333333333222111111
Q ss_pred H----------------------------------------HH----------------------CCChH----HHHHHH
Q 001509 529 L----------------------------------------FK----------------------YQDYV----DAYLRL 542 (1065)
Q Consensus 529 l----------------------------------------~~----------------------~p~~~----~a~~~l 542 (1065)
+ .. ..-.. +....+
T Consensus 553 v~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~ 632 (895)
T KOG2076|consen 553 VDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFREL 632 (895)
T ss_pred HHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHH
Confidence 1 00 00001 233455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CCh----HHHHHhhhhhccccchHHHHHHHHHhhhcCCC-CChH---HHHhhH
Q 001509 543 AAIAKARNNLQLSIELVNEALKVNG--KYP----NALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSY---ATLSLG 612 (1065)
Q Consensus 543 a~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~d~~---~~~~lg 612 (1065)
..++.+.+.+.+|..++..++...- .+. .+.+....+-+..+++..|..+.+.++..... .+++ .|...-
T Consensus 633 i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~ 712 (895)
T KOG2076|consen 633 ILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDF 712 (895)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6677888999999999988877541 222 34444555567788999999999988875221 1222 222111
Q ss_pred HHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcc-hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcch
Q 001509 613 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 691 (1065)
Q Consensus 613 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 691 (1065)
++ +... ++-.-=..++..++..+|.+ +......|..+...+.+.-|+..|.++....| ++|
T Consensus 713 s~-~~~~------------~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p-----d~P 774 (895)
T KOG2076|consen 713 SY-FSKY------------GQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP-----DSP 774 (895)
T ss_pred HH-HHHH------------HHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC-----CCc
Confidence 22 2222 44444455566677778887 55666668888899999999999999999998 667
Q ss_pred HHHHHHHHHHHH--cCC--------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC-
Q 001509 692 DVWINLAHVYFA--QGN--------FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN- 760 (1065)
Q Consensus 692 ~~~~~lg~~~~~--~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~- 760 (1065)
-+-+.+|..+.. +++ .-+++.++.+..+.-.....-++.|++|++|...|=..-|..+|++++.+.|.+
T Consensus 775 l~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~ 854 (895)
T KOG2076|consen 775 LINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDV 854 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccc
Confidence 777777766543 222 234555555544432112247899999999999999999999999999998754
Q ss_pred -----------cchHHHHHHHhhHHHHHH
Q 001509 761 -----------YTLRFDAGVAMQKFSAST 778 (1065)
Q Consensus 761 -----------~~~~~nla~~~~~~~~~~ 778 (1065)
..+.|||.++|+.-+...
T Consensus 855 ~~~~~d~~dLrkeAA~NL~LIY~~SGn~~ 883 (895)
T KOG2076|consen 855 TDPKEDNYDLRKEAAYNLHLIYKKSGNMQ 883 (895)
T ss_pred ccccCCcccHHHHHHhhhhhhhccCCcHH
Confidence 356788888877666533
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-27 Score=286.19 Aligned_cols=442 Identities=13% Similarity=0.053 Sum_probs=357.5
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001509 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
+.++.. ....|-++........+....|++++|+..|.++...+|....++..+|.++...|++.+|+.+|++++...|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445555 5566777777778888899999999999999999988899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1065)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1065)
.+ ..+++.+|.++...|++++|+..+++++..+|++.. +..+|.++...|+ +.+|+..+++++...|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99 677899999999999999999999999999999999 9999999999999 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHhcCCCCCc---
Q 001509 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEF--- 341 (1065)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~--- 341 (1065)
++.++...+..+.|+..++.+...... ..........+.++... .+++ ++|+..|+.++...+..|..
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999999888866541100 00001122223333322 2345 78999999998765444433
Q ss_pred -hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 342 -IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 342 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
..+.+.....++..|++++|+..|++++...|..+ .+...+|.+|...|++++|+.+|++++...|.+..
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~-------- 307 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIAD-------- 307 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC--------
Confidence 22223223345678999999999999998864322 34444699999999999999999999988776521
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
........++.++...|++++|+.++.++....|....... .....|
T Consensus 308 ---~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~------------------------------~~~~~p 354 (765)
T PRK10049 308 ---LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYG------------------------------SPTSIP 354 (765)
T ss_pred ---CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC------------------------------CCCCCC
Confidence 01134566777889999999999999999875431100000 001223
Q ss_pred c--hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhh
Q 001509 500 N--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577 (1065)
Q Consensus 500 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 577 (1065)
+ ...++..++.++...|++++|+..+++++...|.++.+++.+|.++...|++.+|+..+++++.++|+++.+++.++
T Consensus 355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3 34678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccchHHHHHHHHHhhhcCCC
Q 001509 578 DLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
.++...|++++|...++.++...|.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-27 Score=286.18 Aligned_cols=425 Identities=11% Similarity=-0.006 Sum_probs=347.7
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1065)
Q Consensus 89 La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1065)
...+....|+.. +|+..+.++...+|....++..+|.++...|++++|+.+|++++..+|.++.++..+
T Consensus 21 ~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 21 WLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344555566555 899999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH
Q 001509 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1065)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1065)
|.++...|++.+|+..+++++...|++ .. ++.+|.++...|++++|+..|++++...|++..++..++.++...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~-- 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL-- 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--
Confidence 999999999999999999999999999 55 89999999999999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH-----cCCH---HHHHHHHHHHHhccCCCCCc----hHHHHHH
Q 001509 249 GIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFFF-----TGQH---FLVEQLTETALAVTNHGPTK----SHSYYNL 311 (1065)
Q Consensus 249 ~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~----~~~~~~l 311 (1065)
.+.|+..+.++.. .|.... ....+..+.+. .+++ ++|+..++.++...+..|.. ..+....
T Consensus 166 -~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 166 -SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred -hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 8899999987765 544211 12222233322 2234 67888888888764444432 2222332
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHH
Q 001509 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYV 387 (1065)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~ 387 (1065)
...+...|++++|+..|++++...+..|... ...+|.+++..|++++|+.+|++++..+|.+ ......++.++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 3345678999999999999987432224443 3446899999999999999999999888765 456777888899
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccch
Q 001509 388 QLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 467 (1065)
Q Consensus 388 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 467 (1065)
..|++++|+.+++++....|...................++..++.++...|++++|+..+++++.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------------- 387 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------------- 387 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------
Confidence 999999999999999998875432110000000001124677889999999999999999999987
Q ss_pred hhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001509 468 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 547 (1065)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 547 (1065)
..|.++.+++.+|.++...|++++|+..+++++..+|++..+++.+|.++.
T Consensus 388 -----------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 388 -----------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL 438 (765)
T ss_pred -----------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 567789999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHH
Q 001509 548 ARNNLQLSIELVNEALKVNGKYPNALSM 575 (1065)
Q Consensus 548 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 575 (1065)
..|++++|...++.+++..|+++.+...
T Consensus 439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999976653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-26 Score=276.63 Aligned_cols=361 Identities=12% Similarity=0.043 Sum_probs=276.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1065)
+.......+..++..|++..|+.++..++...|.++.++..+|.+....|++++|+..|++++..+|++ ..++..+|.+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~-~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ-PEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHH
Confidence 445566778888899999999999999999999999999999999999999999999999999999999 6778999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 001509 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1065)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1065)
+...|++++|+..|++++.++|+++.++..++.++...|+ +++|+..+.+++...|+++.++..++ .++..|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~---~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK---ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHH
Confidence 9999999999999999999999999999999999999998 99999999999999998887776654 3677788888
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHH----HH
Q 001509 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS----AL 362 (1065)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~ 362 (1065)
|+..+..++...+. ........++.++...|++++|+..|.+++. ..|....+++.+|.++...|++++ |+
T Consensus 196 A~~~~~~~l~~~~~--~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 196 DHDLARALLPFFAL--ERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHHHHHHHHhcCCC--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 88877777655321 1223344556677777777777777777776 345566677777777777777764 67
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 001509 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 442 (1065)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~ 442 (1065)
..|++++..+|+++.++..+|.++...|++++|+.++++++.++|+++ .++.++|.++...|+++
T Consensus 271 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------------~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 271 EHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------------YVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHH
Confidence 777777777777777777777777777777777777777777777766 34566677777777777
Q ss_pred HHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHH
Q 001509 443 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 522 (1065)
Q Consensus 443 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 522 (1065)
+|+..|.+++. ..|.....+..+|.++...|++++|+
T Consensus 336 eA~~~l~~al~-------------------------------------------~~P~~~~~~~~~a~al~~~G~~deA~ 372 (656)
T PRK15174 336 AASDEFVQLAR-------------------------------------------EKGVTSKWNRYAAAALLQAGKTSEAE 372 (656)
T ss_pred HHHHHHHHHHH-------------------------------------------hCccchHHHHHHHHHHHHCCCHHHHH
Confidence 77777777765 33444445555667777777777777
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001509 523 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 567 (1065)
Q Consensus 523 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 567 (1065)
..|.+++..+|++. ...+.+|+..|..++...+
T Consensus 373 ~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 373 SVFEHYIQARASHL------------PQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcC
Confidence 77777777777653 2334456666666555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=269.80 Aligned_cols=381 Identities=13% Similarity=0.055 Sum_probs=329.6
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1065)
.+.+|+.-.-+|...-+. ..++...+...+..+...|++.+|+.++..++...|.+ ..+++.+|.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 444554444444443322 23445566777888999999999999999999999999 77799999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001509 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1065)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1065)
+..|++++..+|+++.++..+|.++...|+ +++|+..|.+++.++|.++.++..++.++...|++++|+..+..++.
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~---~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQ---YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999998877
Q ss_pred ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (1065)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (1065)
.. |..+.++..++ .+...|++++|+..+..++...+ +........++.++...|++++|+..|.+++..+|+++
T Consensus 173 ~~---P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~ 246 (656)
T PRK15174 173 EV---PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA 246 (656)
T ss_pred hC---CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 64 44456665554 48899999999999999887432 22223445668899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 377 ETLKALGHIYVQLGQIEK----AQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 452 (1065)
.++..+|.++...|++++ |+..|++++..+|++. .++.++|.++...|++++|+.++++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999986 8999999999999987 478889999999999999999999999
Q ss_pred cccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Q 001509 453 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 532 (1065)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 532 (1065)
. ..|.++.++.++|.++...|++++|+..|.+++..+
T Consensus 312 ~-------------------------------------------l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 312 A-------------------------------------------THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred H-------------------------------------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8 567788999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 533 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 533 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
|++...+..++.++...|++++|+..|++++...|++. ...|.+|+..|..++...
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAV 404 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhc
Confidence 99988888889999999999999999999999999875 234456666666666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=247.48 Aligned_cols=453 Identities=13% Similarity=0.069 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
+++|+....+++...|++..++..-..++...+.|+.|+.+.+.-.... ......+..+.|+++++..++|+..+.
T Consensus 28 ~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 6666666666666666666555555555555555555554443322110 011112566666677777777766666
Q ss_pred HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 409 (1065)
.+ ++....+....|++++++|+|++|+.+|+.+++.+.+..+.......+..... -.+ . ..+.....|.+
T Consensus 104 -~~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~ 173 (652)
T KOG2376|consen 104 -GL-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPED 173 (652)
T ss_pred -cc-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcc
Confidence 11 12223345556677777777777777777766655544443333222211110 000 0 22222233322
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcc
Q 001509 410 AQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489 (1065)
Q Consensus 410 ~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (1065)
+-+.++|.++++...|+|.+|++.+.+++.+|...-..+...
T Consensus 174 --------------syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~------------------------ 215 (652)
T KOG2376|consen 174 --------------SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN------------------------ 215 (652)
T ss_pred --------------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc------------------------
Confidence 237899999999999999999999999987654221111100
Q ss_pred cCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHH----HHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 001509 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQ-LSIELVNEALK 564 (1065)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~la~~~~~~g~~~-~A~~~~~~al~ 564 (1065)
.-+.......+..+++.++..+|+..+|..+|..++..+|.+.. +-++|..+-....=++ .++..++....
T Consensus 216 ----eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 216 ----EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 00122335678899999999999999999999999998886643 3333332222111111 12222222221
Q ss_pred HCC----------CChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhH
Q 001509 565 VNG----------KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634 (1065)
Q Consensus 565 ~~p----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 634 (1065)
..+ ....++.+.+.+.+..+....+.+.....-...|..-...+ +-.. +... ...+
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~~~ 357 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EKKH 357 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HHHH
Confidence 111 12235556666666667666666666554333333221121 1111 1111 1468
Q ss_pred HHHHHHHHHHHhhCCcc-hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHcCCHHHHH
Q 001509 635 EKAKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAM 711 (1065)
Q Consensus 635 ~~A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~A~ 711 (1065)
.+|..++......+|.+ ......++++.+.+|++..|+.++..++..-..+ .....|.+-..+-..|+..+..+.|.
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHH
Confidence 89999999999999997 6788889999999999999999999544221100 00134455555556677888888888
Q ss_pred HHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhh
Q 001509 712 KMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 712 ~~~~~al~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~ 772 (1065)
..+..++.-|..... ..++..++..-.+.|+-++|...++.+++.+|++..+.-.+..++.
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 999998887654432 3444556666777799999999999999999999887755554433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-25 Score=233.11 Aligned_cols=238 Identities=16% Similarity=0.158 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
..++...|..++-.|++-.|...|+.++.++|.+. ..|..++.+|....+..+-...|.++..
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~~-- 388 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAED-- 388 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHHh--
Confidence 56777788888888999999999999999998876 3577889999999999999999999887
Q ss_pred chhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh
Q 001509 456 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 535 (1065)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 535 (1065)
++|.++.+|+..|.++.-++++++|+.-|++++.++|++
T Consensus 389 -----------------------------------------ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 389 -----------------------------------------LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred -----------------------------------------cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCC-----hHHHHh
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-----SYATLS 610 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-----~~~~~~ 610 (1065)
+-++..++...++++.+.++...|+.+....|+.++++...+.++..++++++|.+.|.+++.+.|..+ +..++.
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998876521 222222
Q ss_pred hHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 611 lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
-+-+.+... +++..|+.++.++++++|....++.++|++..++|+.++|+++|++...+..
T Consensus 508 Ka~l~~qwk------------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 508 KALLVLQWK------------EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhHhhhchh------------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 232211122 8999999999999999999999999999999999999999999999987763
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=226.66 Aligned_cols=469 Identities=17% Similarity=0.176 Sum_probs=246.9
Q ss_pred HHHHHHHHHHHHhhc--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHH
Q 001509 109 HFILATQYYNKASRI--DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDS 181 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A 181 (1065)
-+.+|+..|+-.++. .|+....-+.+|.+++++.+|.+|+.+|+.++..-|.- ...+..+|..+.+.|.|+.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 344888888876643 46666777889999999999999999999999888752 45677888889999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHccch
Q 001509 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--------------PENVEALVALAVMDLQANEA 247 (1065)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~a~~~la~~~~~~~~~ 247 (1065)
+..|..++...|+. .+-+++..|++..|+-++-.+.|.+++.+- |++.-....+-.-+++.-..
T Consensus 296 insfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 99999999999988 335778889999999999999999998751 11111111111111111000
Q ss_pred HhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001509 248 AGIRKGMEKMQRAFEI-YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1065)
.+-..|.+.+..+.++ .|-- .-+|...-.++-..++.+...+...+.-.+.+..+.+.|+++.|++
T Consensus 374 ~~ka~aek~i~ta~kiiapvi-------------~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVI-------------APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred hhhhhHHHHHHHHHHHhcccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 0011111222111111 1100 0000011111111222111122222333444455555555555555
Q ss_pred HHHHHHHhcCCCCCchhhhhhHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 327 YYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
.+.-.-+. .+.....+-.++..+++.+ .++..|..+...++.++.-++.++.+.|.+.+..|++++|...|+.++.
T Consensus 441 ilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 54433321 1111122233333333332 2455555555555555555555555555555555555555555555554
Q ss_pred hCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhh
Q 001509 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 484 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1065)
.+.... +.++|+|..+..+|+.++|+.+|-+.-.+
T Consensus 519 ndasc~---------------ealfniglt~e~~~~ldeald~f~klh~i------------------------------ 553 (840)
T KOG2003|consen 519 NDASCT---------------EALFNIGLTAEALGNLDEALDCFLKLHAI------------------------------ 553 (840)
T ss_pred CchHHH---------------HHHHHhcccHHHhcCHHHHHHHHHHHHHH------------------------------
Confidence 433332 34555555555555555555555443321
Q ss_pred hhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 485 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 564 (1065)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 564 (1065)
--+++.++++++.+|..+.+..+|+++|-++...-|+++..+..|+.+|-+.|+..+|..++-....
T Consensus 554 -------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr 620 (840)
T KOG2003|consen 554 -------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR 620 (840)
T ss_pred -------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc
Confidence 1124455555555555555555555555555555555555555555555555555555555555555
Q ss_pred HCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHH
Q 001509 565 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644 (1065)
Q Consensus 565 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 644 (1065)
..|.+.++.-.|+..|+...-+++|+.+|+++.-+.|....+- +.++.+ +... |+|.+|..+|+..
T Consensus 621 yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq-lmiasc-~rrs------------gnyqka~d~yk~~ 686 (840)
T KOG2003|consen 621 YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ-LMIASC-FRRS------------GNYQKAFDLYKDI 686 (840)
T ss_pred ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH-HHHHHH-HHhc------------ccHHHHHHHHHHH
Confidence 5555555555555555555555555555555544443322111 122333 4443 5555555555555
Q ss_pred HhhCCcchHHHhHHHHHHHhcC
Q 001509 645 IVQHTSNLYAANGAGVVLAEKG 666 (1065)
Q Consensus 645 l~~~p~~~~a~~~la~~~~~~g 666 (1065)
-...|.+...+-.|..+....|
T Consensus 687 hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 687 HRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHhCccchHHHHHHHHHhcccc
Confidence 5555555555555544444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-24 Score=222.88 Aligned_cols=430 Identities=17% Similarity=0.166 Sum_probs=311.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.+-.+|+-++..|+|++|+.+|..+|...|+.+..+.+++.||...|+|++.++...++++++|+. .-+++..+..+..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 445578888888888888888888888888888888888888888888888888888888888888 6778888888888
Q ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Q 001509 210 LGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFL 286 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~ 286 (1065)
+|++.+|+....-.--+ +-.+......+-.++-.+ |+.....-+. ..|.-|.+.+ ++.++..-..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~--------a~~ka~e~~k~nr~p~lPS~~f-i~syf~sF~~--- 263 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ--------AMKKAKEKLKENRPPVLPSATF-IASYFGSFHA--- 263 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH--------HHHHHHHhhcccCCCCCCcHHH-HHHHHhhccc---
Confidence 88888888665532211 122222222222333222 3333333333 1222222211 1111100000
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCC-CC---------chhhhhhHHHHHH
Q 001509 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKP-HE---------FIFPYYGLGQVQL 353 (1065)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~-~~---------~~~~~~~la~~~~ 353 (1065)
............+.+-..-+.-++..+ .|..|...+.+........ .. .+.++...|..++
T Consensus 264 ------~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 264 ------DPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred ------cccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 000000000111222222222222233 5677777666655422111 11 1456777888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
-.|++..|...|..++.++|.+...|..++.+|...++.++....|.++..++|.++ .+|+..|.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~---------------dvYyHRgQ 402 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP---------------DVYYHRGQ 402 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC---------------chhHhHHH
Confidence 999999999999999999999888899999999999999999999999999999998 57999999
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
+++-.+++++|+.-|++++. ++|.++..+.+++.+..
T Consensus 403 m~flL~q~e~A~aDF~Kai~-------------------------------------------L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAIS-------------------------------------------LDPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhh-------------------------------------------cChhhhHHHHHHHHHHH
Confidence 99999999999999999988 67788899999999999
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------ChHHHHHhhhhhcc-ccch
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YPNALSMLGDLELK-NDDW 586 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~-~g~~ 586 (1065)
+++++.++...|+.+....|+.++++...|.++..+++++.|++.|..++.+.|. ++..+...+.+.++ .+++
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence 9999999999999999999999999999999999999999999999999999988 55444444433332 3789
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc
Q 001509 587 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 650 (1065)
Q Consensus 587 ~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 650 (1065)
..|...+.++++..|. ...++..||.+ -.+. |+.++|+++|++++.+--.
T Consensus 520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~-~lQ~------------~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPK-CEQAYETLAQF-ELQR------------GKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHccCch-HHHHHHHHHHH-HHHH------------hhHHHHHHHHHHHHHHHHh
Confidence 9999999999998876 66788889988 7777 9999999999998776443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-23 Score=230.70 Aligned_cols=578 Identities=16% Similarity=0.098 Sum_probs=439.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1065)
+...|+..|-++++++|....+|..+|.+|....+...|..+|+++..++|.++.++-..+..|....+++.|....-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred HHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 189 l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
-+..|.. ....|..+|..|...+++..|+..|+.+++.+|.+..+|..+|..|...|. +..|++.|.++..++|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHh
Confidence 7766654 233466699999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC----CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CC-
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTN----HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP- 338 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~- 338 (1065)
..+.+..+.+....|.|.+++..+...+.... .....++.+..++..++..|-+.+|..++++.+..+. ..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988875421 1224567777888888888888888888877765321 00
Q ss_pred CCchhhhhhHHHHHHH-----------------------cCCH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001509 339 HEFIFPYYGLGQVQLK-----------------------LGDF------RSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1065)
Q Consensus 339 ~~~~~~~~~la~~~~~-----------------------~g~~------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1065)
......|..+|....- ++.. --+.+++-..++.- ..+..|+++|..|++.
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHH
Confidence 1111112222211111 1111 12333333333322 2366788898888872
Q ss_pred --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhc
Q 001509 390 --------GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 461 (1065)
Q Consensus 390 --------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 461 (1065)
.+...|+.++.+++++..++. ..|+.+|.+ ...|++.-|..+|-+++.
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~---------------~~WnaLGVl-sg~gnva~aQHCfIks~~-------- 844 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNE---------------GLWNALGVL-SGIGNVACAQHCFIKSRF-------- 844 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccH---------------HHHHHHHHh-hccchhhhhhhhhhhhhh--------
Confidence 344589999999999988877 578888888 667899999999988876
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHH
Q 001509 462 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 541 (1065)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 541 (1065)
..|.....|.|+|.++....+++.|...+..+..++|.+...|..
T Consensus 845 -----------------------------------sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG 889 (1238)
T KOG1127|consen 845 -----------------------------------SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLG 889 (1238)
T ss_pred -----------------------------------ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHH
Confidence 566788899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---C--hHHHHHhhhhhccccchHHHHHHHHHhhhc---------CCCCChHH
Q 001509 542 LAAIAKARNNLQLSIELVNEALKVNGK---Y--PNALSMLGDLELKNDDWVKAKETFRAASDA---------TDGKDSYA 607 (1065)
Q Consensus 542 la~~~~~~g~~~~A~~~~~~al~~~p~---~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~~~d~~~ 607 (1065)
.+.+....|+.-++...|.-...++.. . ...|..-...+..+|+++.-+...+++-.. ..+....+
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fA 969 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFA 969 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHH
Confidence 999999999999999999885554422 2 235555666677788877666665544321 12235566
Q ss_pred HHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhh-----CC-cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-----HT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 608 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p-~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
+...|.. .... +.+..|...+.+++.+ +. .+..+--..|.+++..|+++.|...+......
T Consensus 970 y~~~gst-lEhL------------~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 970 YAANGST-LEHL------------EEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHHhH-HHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 6666655 5555 7777777777765543 11 12336667788999999999776655433221
Q ss_pred hcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 682 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 682 ~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
. +.++ .......+-.|+|.++.+.|++++.......+ +.++-.++.+....+..+.|...+-+++.+.|.+
T Consensus 1037 v-------dEdi-~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~ 1108 (1238)
T KOG1127|consen 1037 V-------DEDI-RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQ 1108 (1238)
T ss_pred H-------HHHH-hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccc
Confidence 1 1111 11122236679999999999999988555555 5667778888888999999999999999999888
Q ss_pred cchHHHHHHH
Q 001509 761 YTLRFDAGVA 770 (1065)
Q Consensus 761 ~~~~~nla~~ 770 (1065)
....+-|+-+
T Consensus 1109 ~~sll~L~A~ 1118 (1238)
T KOG1127|consen 1109 ASSLLPLPAV 1118 (1238)
T ss_pred hhhHHHHHHH
Confidence 7766666543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=220.21 Aligned_cols=464 Identities=19% Similarity=0.210 Sum_probs=276.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch----HHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLG 202 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~~ 202 (1065)
.+++.++..|.....+.+|+..|+-+++. .|+....-..+|.++++..+|.+|+++|+.++..-|.... .++.+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788899999889999999999988753 5766677788999999999999999999999998887633 34567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhC--------------CCCH
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 268 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--------------p~~~ 268 (1065)
+|..+.+.|.|+.|+..|+.+++..|+.. +-++|..+++..|+ .++-.+.|.+++.+. |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 88899999999999999999999999654 45567777888888 666666677776542 1111
Q ss_pred HHHHHHHHHHH-H--cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001509 269 MALNYLANHFF-F--TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1065)
Q Consensus 269 ~~~~~la~~~~-~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1065)
.+-..+-+-++ . ..+...|.+..-.+.+... |.. .-+|.-.-.++-..++.....+.....-
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi-------------~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVI-------------APDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 11111110000 0 1111112222222221110 000 0011111111111111111111122233
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCC
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 422 (1065)
.+.+-.+++.|+++.|++++.-.-+.+... ..+-.+|..+++.+| ++..|..+...++.++.-++
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~------------ 490 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA------------ 490 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH------------
Confidence 455666677777777777665444433222 234445555555543 56667777777766665555
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchh
Q 001509 423 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 502 (1065)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 502 (1065)
..+.|.|.+.+..|++++|...|++++. .+....
T Consensus 491 ---~a~~nkgn~~f~ngd~dka~~~ykeal~-------------------------------------------ndasc~ 524 (840)
T KOG2003|consen 491 ---AALTNKGNIAFANGDLDKAAEFYKEALN-------------------------------------------NDASCT 524 (840)
T ss_pred ---HHhhcCCceeeecCcHHHHHHHHHHHHc-------------------------------------------CchHHH
Confidence 3455667777777777777777777765 334456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhcc
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 582 (1065)
.+++++|..+..+|+.++|+.+|-++-.+--+++.++..++.+|....++.+|++++.++..+-|++|.++..|+.+|-+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 67777777777777777777777766666666677777777777777777777777777777777777777777777666
Q ss_pred ccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHH
Q 001509 583 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 662 (1065)
Q Consensus 583 ~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 662 (1065)
.|+-.+|..++-....-+|. .....-.||.. |... .-.++|+.+|+++.-+.|+.......++.++
T Consensus 605 egdksqafq~~ydsyryfp~-nie~iewl~ay-yidt------------qf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPC-NIETIEWLAAY-YIDT------------QFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred ccchhhhhhhhhhcccccCc-chHHHHHHHHH-HHhh------------HHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 66666666655544443333 33333344444 4444 4445555555555444454444444444444
Q ss_pred HhcCCcHHHHHHHHHHHHHhc
Q 001509 663 AEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p 683 (1065)
.+.|+|..|.++|..+-...|
T Consensus 671 rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCc
Confidence 444444444444444444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-23 Score=243.67 Aligned_cols=453 Identities=11% Similarity=0.009 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|+.|+.+|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34459999999999999999755558888999999999999999999944455566666678899999999999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
++..+|++ +.+++.++.++...++.++|+..+.+++..+|.+... ..++.++...++ ..+|+..+++++..+|++
T Consensus 128 aL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 128 SLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCCC
Confidence 99999999 7778899999999999999999999999999986554 555555554444 666999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc---------C---CHHHHHHHHHHHHHhc
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASVKEI 335 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~al~~~ 335 (1065)
..++..+..++...|-...|.++...--..... ..........+.-..+. . -.+.|+.-++.++...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998887753222110 01111111111112211 1 2456777777777644
Q ss_pred CCCCC----chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 336 NKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 336 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+..|. ...+.+..-.++...|++.+++..|+.+.... |--..+....|..|+..++.++|+.+|..++.-.|...
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 44342 34455667778889999999999999987544 22456888899999999999999999999988664210
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccch-hhhcccccchhhhhhhhhHHHhhhhhhhhhcc
Q 001509 411 QARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489 (1065)
Q Consensus 411 ~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (1065)
...........|...|...+++++|..++.+.....|+ ......
T Consensus 362 ---------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~-------------------------- 406 (822)
T PRK14574 362 ---------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL-------------------------- 406 (822)
T ss_pred ---------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC--------------------------
Confidence 00111123456778899999999999999999875442 110100
Q ss_pred cCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 001509 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569 (1065)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 569 (1065)
.....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.+..|...++.+..++|.+
T Consensus 407 ---~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~ 483 (822)
T PRK14574 407 ---PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS 483 (822)
T ss_pred ---CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence 11125677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCC
Q 001509 570 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 604 (1065)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d 604 (1065)
..+...++.++...++|.+|......++...|...
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999999999999888743
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-21 Score=237.58 Aligned_cols=543 Identities=12% Similarity=0.016 Sum_probs=420.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
.+..+++....-.+ +...++.+-..+.+.|++..|+.+|+.+...+. .+...+..+...+...|...+|+.+|....
T Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 355 NSLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 34455555444333 445566666777789999999999999987653 344445556667888999999999988765
Q ss_pred HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC-CC
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 267 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~ 267 (1065)
. |+ ...+..+..++...|+++.|...|..+.+... .+...+..+...+.+.|+ ++.|...|..+..... .+
T Consensus 434 ~--pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pd 506 (1060)
T PLN03218 434 N--PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEAN 506 (1060)
T ss_pred C--CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCC
Confidence 4 54 46677888888999999999999999988654 367788899999999999 9999999999987653 37
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCCCchhhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYY 346 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~ 346 (1065)
..+|..+...|...|++++|..+|..+.... ...+...|..+...|.+.|++++|..+|..+... .+..|+ ...+.
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyn 583 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVG 583 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHH
Confidence 8899999999999999999999999987653 2335678999999999999999999999999753 112233 45688
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHcCCCC
Q 001509 347 GLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQARTLLKKAGEEV 423 (1065)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~ 423 (1065)
.+..+|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|+.+|..+... .|+.
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-------------- 649 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-------------- 649 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--------------
Confidence 88899999999999999999999875 456889999999999999999999999998875 3432
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
.+|+.+...+...|++++|..+|..+...+ .+.+..
T Consensus 650 --~TynsLI~a~~k~G~~eeA~~l~~eM~k~G------------------------------------------~~pd~~ 685 (1060)
T PLN03218 650 --VFFSALVDVAGHAGDLDKAFEILQDARKQG------------------------------------------IKLGTV 685 (1060)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------------------------------------CCCCHH
Confidence 478888999999999999999999988642 122567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHHhhhhh
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLE 580 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 580 (1065)
++..+...|.+.|++++|..+|..+... .| +..+|..+...|.+.|++++|.++|..+.... ..+...|..+...+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8899999999999999999999998753 34 47789999999999999999999999987653 23556777777899
Q ss_pred ccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 581 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 581 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
.+.|+++.|..+|..+++....++...+..+..+ +. +.+++|......++..++.++
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~-------- 821 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRP-------- 821 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhcccc--------
Confidence 9999999999999999998777777766665443 21 446677766666655443322
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 001509 661 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 740 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~ 740 (1065)
....+....|+.+|+++++..- . .+..++..+-.|+...+....+..+++... ..+..++..++..+-..+
T Consensus 822 -~~~n~w~~~Al~lf~eM~~~Gi---~-Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~--- 892 (1060)
T PLN03218 822 -QIENKWTSWALMVYRETISAGT---L-PTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF--- 892 (1060)
T ss_pred -ccccchHHHHHHHHHHHHHCCC---C-CCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---
Confidence 2223445679999999998652 1 245566666677777788887777776533 223444455555555554
Q ss_pred hc-HHHHHHHHHHHHHh
Q 001509 741 EQ-WQDCKKSLLRAIHL 756 (1065)
Q Consensus 741 g~-~~~A~~~~~kal~~ 756 (1065)
|+ ..+|...|+.+...
T Consensus 893 ~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 893 GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred ccChHHHHHHHHHHHHc
Confidence 43 35799999999886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-22 Score=239.00 Aligned_cols=465 Identities=11% Similarity=0.004 Sum_probs=371.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
++--..-..|..+...+..+.+.++.|++..|+..|.++++.+|.++.+...++.++...|++.+|+.++++++...|..
T Consensus 22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC
Confidence 33334456789999999999999999999999999999999999997666688888999999999999999999333333
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 275 (1065)
...+..+|.++...|++++|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++
T Consensus 102 -~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~la 176 (822)
T PRK14574 102 -SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLS 176 (822)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHH
Confidence 34445558899999999999999999999999999999999999999988 999999999999999986665 5566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1065)
.++...+++.+|+..+++++.. .|.+..++..+..++...|-...|.....+-...+ .+.+........+.-.++.
T Consensus 177 yL~~~~~~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~ 252 (822)
T PRK14574 177 YLNRATDRNYDALQASSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRM 252 (822)
T ss_pred HHHHhcchHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhh
Confidence 6666678887799999999988 47778999999999999999999987776543222 1112112222222222222
Q ss_pred C------------CHHHHHHHHHHHHHhC---CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001509 356 G------------DFRSALTNFEKVLEIY---PDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416 (1065)
Q Consensus 356 g------------~~~~A~~~~~~~l~~~---p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 416 (1065)
+ -.+.|+..++.++... |.. ..+..-.-.++...|++.+++..|+.+....
T Consensus 253 a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~---------- 322 (822)
T PRK14574 253 AVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG---------- 322 (822)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC----------
Confidence 2 2456778888888743 432 2344456667778899999999999866443
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcC
Q 001509 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 496 (1065)
Q Consensus 417 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 496 (1065)
...|+-+...+|..|...++.++|+.+|..++...+. ..
T Consensus 323 ----~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~-------------------------------------~~ 361 (822)
T PRK14574 323 ----YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK-------------------------------------TF 361 (822)
T ss_pred ----CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc-------------------------------------cc
Confidence 2223356777899999999999999999998763210 00
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---------------DYVDAYLRLAAIAKARNNLQLSIELVNE 561 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~a~~~la~~~~~~g~~~~A~~~~~~ 561 (1065)
..+........|...|...+++++|..++..+....| ++.++...++.++...|++.+|.+.++.
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1223444456788889999999999999999987433 4567888899999999999999999999
Q ss_pred HHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHH
Q 001509 562 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 641 (1065)
Q Consensus 562 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 641 (1065)
++...|.++.++..++.++...|.+..|...++.+....|. +..+...+|.+ +... +++.+|....
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~-al~l------------~e~~~A~~~~ 507 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAET-AMAL------------QEWHQMELLT 507 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHH-HHhh------------hhHHHHHHHH
Confidence 99999999999999999999999999999999888877555 78888889988 8888 9999999999
Q ss_pred HHHHhhCCcchHH
Q 001509 642 TRVIVQHTSNLYA 654 (1065)
Q Consensus 642 ~~~l~~~p~~~~a 654 (1065)
..++...|++...
T Consensus 508 ~~l~~~~Pe~~~~ 520 (822)
T PRK14574 508 DDVISRSPEDIPS 520 (822)
T ss_pred HHHHhhCCCchhH
Confidence 9999999998743
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-20 Score=230.93 Aligned_cols=528 Identities=12% Similarity=0.036 Sum_probs=321.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHH
Q 001509 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN 118 (1065)
Q Consensus 39 ~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~ 118 (1065)
+...++.+-..+++.|++.+|+.+|+.+...+..+ .....+..+..++...|... .|..+|.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-------~~~v~~~~li~~~~~~g~~~-----------eAl~lf~ 430 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-------MDKIYHAKFFKACKKQRAVK-----------EAFRFAK 430 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-------chHHHHHHHHHHHHHCCCHH-----------HHHHHHH
Confidence 34556666667777788888888887775443211 12223344445555555544 6777776
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
.+.. | +..+|..+...+...|+++.|..+|..+.+... .+...+..+...|.+.|+++.|..+|..+.........
T Consensus 431 ~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 431 LIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred HcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 6543 3 556677777777777888888888877776543 35666777777777778888888887777765533224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHh----CCCCHHHH
Q 001509 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLD--PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI----YPYCAMAL 271 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 271 (1065)
.+|..+...|.+.|++++|...|..+.... | +...|..+...+.+.|+ +++|...+..+... .| +..++
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~---~deA~~lf~eM~~~~~gi~P-D~vTy 582 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGA---VDRAFDVLAEMKAETHPIDP-DHITV 582 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhcCCCCC-cHHHH
Confidence 567777777777788888887777776543 3 45667777777777777 77777777777652 23 35567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHH
Q 001509 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1065)
..+...|...|++++|..++..+.... .+.....|..+...|.+.|++++|+.+|..+.... ..|+ ...+..+...
T Consensus 583 naLI~ay~k~G~ldeA~elf~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD-~~TynsLI~a 658 (1060)
T PLN03218 583 GALMKACANAGQVDRAKEVYQMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPD-EVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHH
Confidence 777777777777777777777776542 23345677777777777777777777777776532 1222 3456667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHcCCCCCHHHH
Q 001509 352 QLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQARTLLKKAGEEVPIEVL 428 (1065)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~ 428 (1065)
+.+.|++++|..+|..+.+.. +.+..++..+...|.+.|++++|..+|+.+... .|+. .+|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv----------------vty 722 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV----------------STM 722 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----------------HHH
Confidence 777777777777777777643 234667777777777777777777777766542 2322 357
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
+.+...|.+.|++++|+.+|.++...+ ..| +..++..+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~G-----------------------------------------i~P-d~~Ty~sL 760 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLG-----------------------------------------LCP-NTITYSIL 760 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-----------------------------------------CCC-CHHHHHHH
Confidence 777777777777777777777765422 222 34455566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccch
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKY--QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 586 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 586 (1065)
...+...|+++.|..++..+++.. |+ ...+..+..++. +.+.+|.......+..++ +......+..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIglc~--~~y~ka~~l~~~v~~f~~---------g~~~~~n~w~ 828 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCL--RRFEKACALGEPVVSFDS---------GRPQIENKWT 828 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc---------cccccccchH
Confidence 667777777777777777776533 33 333333322222 234555444443333322 2222222334
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHh-hCCcchHHHhHHHHHHHhc
Q 001509 587 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV-QHTSNLYAANGAGVVLAEK 665 (1065)
Q Consensus 587 ~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~a~~~la~~~~~~ 665 (1065)
..|..+|++++...-.++..++..+..+ +... +....+..++..... -.+.+...++.+...+
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c-l~~~------------~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--- 892 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGC-LQLP------------HDATLRNRLIENLGISADSQKQSNLSTLVDGF--- 892 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-hccc------------ccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---
Confidence 5577777777766555555555544444 3333 444555555543221 1222344444444433
Q ss_pred CC-cHHHHHHHHHHHHHh
Q 001509 666 GQ-FDVSKDLFTQVQEAA 682 (1065)
Q Consensus 666 g~-~~~A~~~~~~~~~~~ 682 (1065)
|+ ..+|..+|+.+....
T Consensus 893 ~~~~~~A~~l~~em~~~G 910 (1060)
T PLN03218 893 GEYDPRAFSLLEEAASLG 910 (1060)
T ss_pred ccChHHHHHHHHHHHHcC
Confidence 22 246777777666654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-23 Score=217.41 Aligned_cols=288 Identities=14% Similarity=0.138 Sum_probs=250.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchh
Q 001509 423 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 502 (1065)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 502 (1065)
....++...+..++..++|.+....+...++. +|...
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-------------------------------------------dpfh~ 278 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-------------------------------------------DPFHL 278 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-------------------------------------------CCCCc
Confidence 34577888899999999999999999998873 33344
Q ss_pred HH-HHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhc
Q 001509 503 TV-LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 581 (1065)
Q Consensus 503 ~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 581 (1065)
.+ -+.+| ++..+|+..+-..+-.+++..+|+.+-.|+.+|..|...|++.+|.++|.++..++|....+|..+|..+.
T Consensus 279 ~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 279 PCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA 357 (611)
T ss_pred chHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence 44 44555 88888999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHH
Q 001509 582 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 661 (1065)
Q Consensus 582 ~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~ 661 (1065)
..|+.++|+..|..+.+..+.... ..+-+|-- |... ++++.|..+|.+++.+.|.++..++.+|.+
T Consensus 358 ~e~EhdQAmaaY~tAarl~~G~hl-P~LYlgme-y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLMPGCHL-PSLYLGME-YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVV 423 (611)
T ss_pred hcchHHHHHHHHHHHHHhccCCcc-hHHHHHHH-HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence 999999999999999998776322 23335555 7777 999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 001509 662 LAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 739 (1065)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~ 739 (1065)
....+.|.+|..+|+.++...+.. ..+.....+.||||+|.+++.+.+||..|+++|.. .+.++.++-.+|.+|..
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHL 501 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHH
Confidence 999999999999999999655421 11135567999999999999999999999999998 67788999999999999
Q ss_pred hhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 740 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 740 ~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
.|+++.|+.+|.+++-+.|+|..+.--|..+
T Consensus 502 lgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999998777555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-22 Score=215.02 Aligned_cols=461 Identities=18% Similarity=0.159 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
...|..|+-+-+++..+. .+|.-.+.+|.+++..|++..|..+...- .....+..+.+..+.++....+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888889988887 78888888999999999999998777654 5666788899999999999999999999888
Q ss_pred HH------HHhCCCC------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
.. +..+|.+ ...+.+..|.+|..+.++++|...|..++..++.+.++...+....+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 43 1111111 12234556677777777777777777777777777776666554444
Q ss_pred HccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001509 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 243 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1065)
.... +-...+.. ++- +. ..+...+ ...+|+-.+....+.+ .....++
T Consensus 187 lt~~-----Ee~~ll~~---l~~---------a~---~~~ed~e~l~~lyel~~~k~~n~~-----------~~~r~~~- 234 (611)
T KOG1173|consen 187 LTAQ-----EEFELLES---LDL---------AM---LTKEDVERLEILYELKLCKNRNEE-----------SLTRNED- 234 (611)
T ss_pred cchh-----HHHHHHhc---ccH---------Hh---hhhhHHHHHHHHHHhhhhhhcccc-----------ccccCch-
Confidence 3311 11111110 000 00 0000000 0111110000000000 0000000
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (1065)
..+. .-..........+..++..+++.+...+++.+++.+|-++.++.....++...|+..+-..+-.+
T Consensus 235 --------~sl~---~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 235 --------ESLI---GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHK 303 (611)
T ss_pred --------hhhh---hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHH
Confidence 0010 11334456777889999999999999999999999999887777666699999999888888889
Q ss_pred HHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhh
Q 001509 402 AAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 481 (1065)
Q Consensus 402 al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1065)
+.+..|+.+ -.|+.+|+.|...|++.+|..+|.++..
T Consensus 304 LV~~yP~~a---------------~sW~aVg~YYl~i~k~seARry~SKat~---------------------------- 340 (611)
T KOG1173|consen 304 LVDLYPSKA---------------LSWFAVGCYYLMIGKYSEARRYFSKATT---------------------------- 340 (611)
T ss_pred HHHhCCCCC---------------cchhhHHHHHHHhcCcHHHHHHHHHHhh----------------------------
Confidence 999999987 4799999999999999999999999987
Q ss_pred hhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 482 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 561 (1065)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 561 (1065)
.+|....+|...|..|...|..++|+..|..+-+..|......+.+|.-|...+++..|..+|.+
T Consensus 341 ---------------lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 341 ---------------LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred ---------------cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 66778899999999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC----C--ChHHHHhhHHHHHHHHHhhhhcChhHHhhhHH
Q 001509 562 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG----K--DSYATLSLGNWNYFAALRNEKRAPKLEATHLE 635 (1065)
Q Consensus 562 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~--d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 635 (1065)
++.+.|.+|.++.-+|.+.+..+.|.+|..+|+.++...+. . -...+..||.+ |... +.++
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~-~Rkl------------~~~~ 472 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA-YRKL------------NKYE 472 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH-HHHH------------hhHH
Confidence 99999999999999999999999999999999999853222 1 22357789998 8888 9999
Q ss_pred HHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 636 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 636 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
+|+.+|+++|.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999887
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-21 Score=202.51 Aligned_cols=441 Identities=17% Similarity=0.170 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh------hhhhHHHHHHHHH
Q 001509 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK------QREKEEHFILATQ 115 (1065)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~------~~~k~~~~~~A~~ 115 (1065)
..+.+|..|+....++.|.-.|+...+.. ...+...+.+.....+.... ...+...-...+.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~k------------~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~ 147 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSKK------------SAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELI 147 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchHH------------HHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHH
Confidence 45789999999999999999998874421 11111111111111000000 0001111223344
Q ss_pred HHHHHhhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 116 YYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 116 ~~~~a~~~----~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+++-++. ...++..++..|.++...|....|+..|..++...|-+-.+|+.++.+... +.........
T Consensus 148 ~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~ 220 (559)
T KOG1155|consen 148 ELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVG 220 (559)
T ss_pred HHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhc
Confidence 44443332 234577888999999999999999999999999999999999998876432 3333333333
Q ss_pred CCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 192 HPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 192 ~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
-|. .....-+.++.++..+...++++.-++..+.. .|.+...-...|.+.....+ ++.|+..|+.+.+.+|....
T Consensus 221 l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 221 LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCCcch
Confidence 443 22334456788888888999999999998888 78888888888888888888 99999999999999999888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
-+-.+.++++...+-.+..-+...+... +...++.+..+|..|...++.++|+.+|+++++ .+|....+|..+|
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~i---dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmG 371 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMG 371 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhh
Confidence 8888888888888877766666666555 345668889999999999999999999999998 6788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~ 429 (1065)
.-|..+.+...|+..|+.+++++|.+..+|+.||+.|.-++...=|+-+|++++...|+++ .+|.
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---------------Rlw~ 436 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---------------RLWV 436 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch---------------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988 5788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHH
Q 001509 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509 (1065)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 509 (1065)
.+|.+|.+.++.++|+.+|++++.. ......+++.+|
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~-------------------------------------------~dte~~~l~~La 473 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILL-------------------------------------------GDTEGSALVRLA 473 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-------------------------------------------cccchHHHHHHH
Confidence 8999999999999999999999873 223567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHH-------HCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q 001509 510 RLLEQIHDTVAASVLYRLILF-------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 568 (1065)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 568 (1065)
.+|..+++..+|..+|.+.+. ..|....+...|+..+.+.+++++|..+...++.-++.
T Consensus 474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 999999999999999999887 45666778888999999999999999888887766443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-22 Score=243.31 Aligned_cols=467 Identities=13% Similarity=0.038 Sum_probs=389.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 40 ~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
...|..+...|.+.|++++|+.+|+.+..... +. -....++.+..++...+... .|..++..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~---~~----~~~~t~~~ll~a~~~~~~~~-----------~a~~l~~~ 148 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCP---FT----LPASTYDALVEACIALKSIR-----------CVKAVYWH 148 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---CC----CCHHHHHHHHHHHHhCCCHH-----------HHHHHHHH
Confidence 34789999999999999999999998854321 00 12346777777787777665 67777777
Q ss_pred Hhh--cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 120 ASR--IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 120 a~~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
+.. ..| ++.++..+...|.+.|+++.|...|+.+.. | +..+|..+...|.+.|++++|+.+|++++...+....
T Consensus 149 m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 765 445 578889999999999999999999998853 3 5778999999999999999999999999987755545
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLD-PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
.++..+..++...|....+...+..+++.. ..+..++..|...|.+.|+ +++|...|..+ .+.+..+|+.+..
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~---~~~A~~vf~~m---~~~~~vt~n~li~ 298 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD---IEDARCVFDGM---PEKTTVAWNSMLA 298 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC---HHHHHHHHHhC---CCCChhHHHHHHH
Confidence 667778888899999999999998887754 2356678889999999999 99999999876 4568899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcC
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1065)
.|...|++++|..+|..+.... ...+..++..+..++...|.++.|...+..+++.. .+....++..+..+|.+.|
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g--~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g--~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSG--VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG--FPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--CCCCeeehHHHHHHHHHCC
Confidence 9999999999999999987643 23456789999999999999999999999998752 2445567888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--DPRDAQARTLLKKAGEEVPIEVLNNIGVI 434 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~~~la~~ 434 (1065)
++++|..+|+++.. .+..+|..+...|.+.|+.++|+.+|+++... .|+. .++..+...
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~----------------~T~~~ll~a 435 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH----------------VTFLAVLSA 435 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH----------------HHHHHHHHH
Confidence 99999999998764 35778999999999999999999999998764 3443 468888899
Q ss_pred HHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHH
Q 001509 435 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 514 (1065)
Q Consensus 435 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 514 (1065)
+...|..++|..+|+.+..... ..| +...|..+..+|.+
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g----------------------------------------~~p-~~~~y~~li~~l~r 474 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHR----------------------------------------IKP-RAMHYACMIELLGR 474 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcC----------------------------------------CCC-CccchHhHHHHHHh
Confidence 9999999999999999875211 222 45678889999999
Q ss_pred cCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHH
Q 001509 515 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 594 (1065)
Q Consensus 515 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 594 (1065)
.|++++|..+++++- ..| +..+|..+...+...|+++.|...+++++.+.|++...|..++.+|...|+|++|.+.++
T Consensus 475 ~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 475 EGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999987652 233 466799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcC
Q 001509 595 AASDAT 600 (1065)
Q Consensus 595 ~al~~~ 600 (1065)
.+....
T Consensus 553 ~m~~~g 558 (697)
T PLN03081 553 TLKRKG 558 (697)
T ss_pred HHHHcC
Confidence 987754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-22 Score=240.84 Aligned_cols=463 Identities=12% Similarity=0.002 Sum_probs=323.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1065)
..|..+...+...|++.+|+..|..+....| -+..++..+..++...+++..|..++..+..........++..+..+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4677788888899999999999998876543 35677888888888999999999999988876533335678888899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Q 001509 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~ 285 (1065)
|.+.|+++.|...|+.+.. | +...|..+...+...|+ +++|+..|.++....+ .+..++..+...+...|...
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGN---YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 9999999999999998743 3 55678888888888888 8888888888876543 24556666667777777777
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
.+..++..+++.. ...+..++..+...|.+.|++++|..+|.... +....+|..+...|.+.|++++|+.+|
T Consensus 242 ~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 242 AGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred HHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777776666543 12344566777777777777777777776553 224456777777777777777777777
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001509 366 EKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 444 (1065)
Q Consensus 366 ~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A 444 (1065)
.++.... ..+..++..+..++.+.|++++|..++..+++...... ..+++.+...|.+.|++++|
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d--------------~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--------------IVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC--------------eeehHHHHHHHHHCCCHHHH
Confidence 7776532 12355677777777777777777777777766532111 13566677777777777777
Q ss_pred HHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHH
Q 001509 445 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524 (1065)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 524 (1065)
..+|.++.. .+..+|..+...|...|+.++|+.+
T Consensus 380 ~~vf~~m~~----------------------------------------------~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 380 RNVFDRMPR----------------------------------------------KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHHHHhCCC----------------------------------------------CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 777776532 1345667777777777777777777
Q ss_pred HHHHHHH--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ChHHHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 525 YRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 525 ~~~al~~--~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
|+++... .|+ ..++..+...+...|..++|..+|+.+.+..+- +...|..+..++.+.|++++|.+.++++ .
T Consensus 414 f~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 414 FERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 7777653 233 555666666777777777777777777654322 3346666777777777777777776653 2
Q ss_pred CCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHH
Q 001509 601 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 680 (1065)
Q Consensus 601 ~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~ 680 (1065)
..++...|..|... +... |+++.|...+++++...|.+...+..++.+|...|++++|..+++.+.+
T Consensus 490 ~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 490 FKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22355566666666 6555 7777777777777777777766777777777777777777777777665
Q ss_pred Hh
Q 001509 681 AA 682 (1065)
Q Consensus 681 ~~ 682 (1065)
..
T Consensus 557 ~g 558 (697)
T PLN03081 557 KG 558 (697)
T ss_pred cC
Confidence 53
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=226.54 Aligned_cols=312 Identities=21% Similarity=0.250 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
....++..+|..|..+.... ..+|+..|.+.-...++...++..+|..|+..++|++|..+|+.+-+..|-
T Consensus 315 ~l~~llr~~~~~~~~~s~y~---------~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYN---------CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 55677777888887766544 559999999977777888888889999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
.+...-....+++...+--+---+.+..+..+|+. +..|..+|.||.-+++++.|+.+|+++++++|....++..+|.=
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77777677777777777666666777888889999 77899999999999999999999999999999999999999998
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCC
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1065)
+....+ ++.|+.+|+.++..+|.+..+|+.+|.+|..+++++.|+-.|++++.. +|........+|.++++.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhh
Confidence 888888 999999999999999999999999999999999999999999999987 57788999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1065)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 400 (1065)
.++|+.+|++|+. .+|..+...+..|.+++..+++++|+..++++.++-|+...+++.+|.+|.+.|+.+.|+..|-
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 9999999999997 6688888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHH
Q 001509 401 KAAKIDPRDAQ 411 (1065)
Q Consensus 401 ~al~~~p~~~~ 411 (1065)
-++.++|....
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 99999998654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-20 Score=210.96 Aligned_cols=590 Identities=14% Similarity=0.054 Sum_probs=420.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YSDSLEF 184 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~Al~~ 184 (1065)
.+.+..|..+|..++..+|.+ ....|.+......|..|...+..+.... .|.+.+..+..++.+.+. .+-|.-.
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s-~nd~slselswc~~~~~ek~mdva~~~ 456 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLS-FNDDSLSELSWCLPRALEKMMDVALLL 456 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhh-cCchhhhHhhHHHHHhHHhhhhHHHHH
Confidence 455667777777777776655 5566777777777777777777776665 455555566666554211 1111111
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhC
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1065)
+.. ...|..++. +...+...|...|-++++++|....++..||.+|....+ ...|..+|.++++++
T Consensus 457 ~~e---------~~~~w~a~~--~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLD 522 (1238)
T KOG1127|consen 457 ECE---------NSEFWVALG--CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELD 522 (1238)
T ss_pred HHH---------HHHHHHHHH--HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC
Confidence 111 111111221 233458899999999999999999999999999998877 999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001509 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1065)
+.+..+.-..+..|....+++.|....-.+-+..+. ......|..+|..|...+++.+|+..|+.++. .+|....+
T Consensus 523 atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~ 598 (1238)
T KOG1127|consen 523 ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNL 598 (1238)
T ss_pred chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHH
Confidence 999999999999999999999999885544333211 12345667799999999999999999999998 67888899
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCC
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
|..+|.+|...|.+..|++.|.++..+.|.+..+.+..+.+....|.|.+|+..+...+........+ ....
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~--------q~gL 670 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG--------QNGL 670 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--------hhhH
Confidence 99999999999999999999999999999999999999999999999999999999988765433322 1122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 504 (1065)
.+++...+..+...|-+..|..+++++++.....-.-.. ..+...|.+-....-.|.+++ |+.+..
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~-----~~~~~~Wi~asdac~~f~q~e---------~~~vn~ 736 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL-----QSDRLQWIVASDACYIFSQEE---------PSIVNM 736 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHhHHHHHHHHhc---------ccchHH
Confidence 367777788888888889999999988875321100000 000011111111111111111 111111
Q ss_pred HHH--HHHHHHHcCCh---H---HHHHHHHHHHHHCCChHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHCCC
Q 001509 505 LFN--LARLLEQIHDT---V---AASVLYRLILFKYQDYVDAYLRLAAIAKA--------RNNLQLSIELVNEALKVNGK 568 (1065)
Q Consensus 505 ~~~--la~~~~~~g~~---~---~A~~~~~~al~~~p~~~~a~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~ 568 (1065)
++. +-.-...++.. + -|.+++-..+..-.. +..|+++|.-|+. ..+...|+.++.+++++..+
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an 815 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN 815 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc
Confidence 111 11111112211 1 223333333332221 5567777766654 22445799999999999999
Q ss_pred ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC
Q 001509 569 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 648 (1065)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 648 (1065)
+...|..||.+ ...|++.-|...|-+.+...|. ..-.|.++|.+ +... .+++.|...|.++..++
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL-~l~n------------~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVL-VLEN------------QDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheecccee-EEec------------ccHHHhhHHHHhhhhcC
Confidence 99999999999 6668999999999999887776 66678888888 8887 99999999999999999
Q ss_pred CcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHh-
Q 001509 649 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC------LRKF- 721 (1065)
Q Consensus 649 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~- 721 (1065)
|.|...|.+.+.+....|+.-++..+|....+......-......|++--.....+|+++.-|..-+++ ++.|
T Consensus 881 P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 881 PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999985555543322233456666667777888888777665543 3332
Q ss_pred -cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 722 -YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 722 -~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
..++..-++...|..+.+.+.+.+|.....+++.+
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rligl 996 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGL 996 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 23455888999999999999999999888877654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-20 Score=196.00 Aligned_cols=444 Identities=16% Similarity=0.108 Sum_probs=343.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------------h---HHHHHHHHHHHHh
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------------Y---SDSLEFYKRALQV 191 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------------~---~~Al~~~~~al~~ 191 (1065)
.+.+|..++....++.|.-+++.+.. ....+..-.+.+..|. + ...+..+.+-++.
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~ 155 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLES 155 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHH
Confidence 45677888888888888777766533 1122211112222111 1 1222222332222
Q ss_pred ---CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC--C
Q 001509 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--Y 266 (1065)
Q Consensus 192 ---~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~ 266 (1065)
.-+.....++..|.++...|....|+..|..++...|-+..+|..|+.+..... ........-| .
T Consensus 156 ~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----------~~~~l~~~l~~~~ 225 (559)
T KOG1155|consen 156 KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----------ILSILVVGLPSDM 225 (559)
T ss_pred HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----------HHHHHHhcCcccc
Confidence 122235678889999999999999999999999999999999999987754332 2222222233 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhh
Q 001509 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1065)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1065)
+...-..+..++....++++++.-++...... .|.....-...|.+.+...++++|+..|+.+.+ ++|-...-.-
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g--f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmd 300 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVG--FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMD 300 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHH
Confidence 55666777888888888888888877776653 356667778889999999999999999999998 4454444444
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHH
Q 001509 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426 (1065)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 426 (1065)
....+++-.++-.+-.-+...+..++.-.+++...+|..|...++.++|+.+|+++++++|....
T Consensus 301 lySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~--------------- 365 (559)
T KOG1155|consen 301 LYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS--------------- 365 (559)
T ss_pred HHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------------
Confidence 55666666666555555666677788778899999999999999999999999999999999884
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHH
Q 001509 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 506 (1065)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (1065)
+|..+|.-|..+.+...|+..|++|++ ..|.+-.+|+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvd-------------------------------------------i~p~DyRAWY 402 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVD-------------------------------------------INPRDYRAWY 402 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHh-------------------------------------------cCchhHHHHh
Confidence 577779999999999999999999998 5677999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccch
Q 001509 507 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 586 (1065)
Q Consensus 507 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 586 (1065)
.+|..|..++.+.-|+-+|++++...|++...|..||.||.+.++.++|+++|..++..+..+..++..+|.+|.+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC------CCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 587 VKAKETFRAASDAT------DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 587 ~~A~~~~~~al~~~------~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
.+|..+|++.+... .+....+...|+.. +... +++++|..+...++.-++.
T Consensus 483 ~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~-f~k~------------~~~~~As~Ya~~~~~~~~e---------- 539 (559)
T KOG1155|consen 483 NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY-FKKM------------KDFDEASYYATLVLKGETE---------- 539 (559)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHhh------------cchHHHHHHHHHHhcCCch----------
Confidence 99999999988732 22245677778888 8888 9999998888777665332
Q ss_pred HHHhcCCcHHHHHHHHHHHHHh
Q 001509 661 VLAEKGQFDVSKDLFTQVQEAA 682 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~ 682 (1065)
.++|..+++.++...
T Consensus 540 -------~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 540 -------CEEAKALLREIRKIQ 554 (559)
T ss_pred -------HHHHHHHHHHHHHhc
Confidence 456666666666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-21 Score=207.14 Aligned_cols=260 Identities=18% Similarity=0.197 Sum_probs=199.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCC
Q 001509 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423 (1065)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 423 (1065)
..-.+|...++..++..|+..|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++.......-..++
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI------- 297 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI------- 297 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH-------
Confidence 35678999999999999999999999999 8888999999999999999999999888777654433222222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
...+..+|..|...++++.|+.+|.+++.... .
T Consensus 298 -ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R--------------------------------------------t-- 330 (539)
T KOG0548|consen 298 -AKALARLGNAYTKREDYEGAIKYYQKALTEHR--------------------------------------------T-- 330 (539)
T ss_pred -HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc--------------------------------------------C--
Confidence 13444577788889999999999999886211 1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccc
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 583 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 583 (1065)
..++......++++.......-.+|.-......-|..++..|+|..|+..|.+++..+|+++..|.+.+.||.++
T Consensus 331 -----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 331 -----PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 334445556677777777666677777666666788888888888888888888888888888888888888888
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHH
Q 001509 584 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 663 (1065)
Q Consensus 584 g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 663 (1065)
|.+..|+...+.++++.|+ ..-.++.-|.+ +... .+|++|++.|+++++.+|++..+.-++..++.
T Consensus 406 ~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 8888888888888887665 56677777777 7777 88889999999999999888888888877776
Q ss_pred hcCCcHHHHHHHHH
Q 001509 664 EKGQFDVSKDLFTQ 677 (1065)
Q Consensus 664 ~~g~~~~A~~~~~~ 677 (1065)
.+........+.++
T Consensus 472 a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 472 AQRGDETPEETKRR 485 (539)
T ss_pred HhhcCCCHHHHHHh
Confidence 54333333444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=221.86 Aligned_cols=300 Identities=19% Similarity=0.194 Sum_probs=247.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~ 429 (1065)
.....+-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-++.|-...... +|
T Consensus 327 ~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~me------------iy- 393 (638)
T KOG1126|consen 327 YRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGME------------IY- 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchh------------HH-
Confidence 33344456788999999977777888888899999999999999999999998888886554222 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHH
Q 001509 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509 (1065)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 509 (1065)
..+++...+- -++.++-+-+- ..+|..+..|..+|
T Consensus 394 --ST~LWHLq~~-v~Ls~Laq~Li------------------------------------------~~~~~sPesWca~G 428 (638)
T KOG1126|consen 394 --STTLWHLQDE-VALSYLAQDLI------------------------------------------DTDPNSPESWCALG 428 (638)
T ss_pred --HHHHHHHHhh-HHHHHHHHHHH------------------------------------------hhCCCCcHHHHHhc
Confidence 2222222221 12222222111 16778899999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHH
Q 001509 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 589 (1065)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 589 (1065)
.||..+++++.|++.|+++++++|....+|..+|.-+.....++.|..+|+.++.++|.+..+|+.+|.+|.++++++.|
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcH
Q 001509 590 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 669 (1065)
Q Consensus 590 ~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 669 (1065)
.-+|++++.+.|. .......+|.+ +... |..++|+.+|++++.++|.|+...+..|.++...+++.
T Consensus 509 e~~fqkA~~INP~-nsvi~~~~g~~-~~~~------------k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 509 EFHFQKAVEINPS-NSVILCHIGRI-QHQL------------KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred HHHHHhhhcCCcc-chhHHhhhhHH-HHHh------------hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 9999999998887 55566678888 8888 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 670 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 670 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
+|+..++.+.+..| +...+++.+|.+|..+|+.+.|+..|.-|+...|...+
T Consensus 575 eal~~LEeLk~~vP-----~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 575 EALQELEELKELVP-----QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999887 77889999999999999999999999999888655544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-18 Score=181.30 Aligned_cols=480 Identities=18% Similarity=0.199 Sum_probs=376.1
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
..|+..++.+.-+...|+..|.--..++++..|...|+++|..+..+...|+..+.+-++.+....|..++.+++.+-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555566666677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001509 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1065)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 274 (1065)
. ...|+....+-..+|+...|.+.|++-+...| ...+|.....+-+..++ ++.|...|++.+-.+| ....|...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP-~v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHP-KVSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheecc-cHHHHHHH
Confidence 8 77788888888999999999999999999999 57889999988888888 9999999999998887 45678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1065)
+..-...|+...+..+|+.++....+.......+...|..-..+..++.|...|.-+++.++.+.. ...+-.+...--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHH
Confidence 999999999999999999999877655555556666777777889999999999999987653211 1222222222233
Q ss_pred cCCH---HHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHH
Q 001509 355 LGDF---RSAL-----TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426 (1065)
Q Consensus 355 ~g~~---~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 426 (1065)
-|+. +.++ -.|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++++...|....-...-. - .-
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R-Y-----IY 366 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR-Y-----IY 366 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH-H-----HH
Confidence 3443 3333 2578888999999999999999999999999999999999998776443111000 0 13
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 427 VLNNIGVI-HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 427 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
+|.|.+.. -+...+.+.+.++|+.++.+-|. ..-..+.+|
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~lIPH---------------------------------------kkFtFaKiW 407 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDLIPH---------------------------------------KKFTFAKIW 407 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc---------------------------------------ccchHHHHH
Confidence 45555443 34578899999999999985432 112366788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccc
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
...|....++.+...|..++-.++-..|.+ ..+-....+-.+.++++.+..+|++.+..+|.+..+|...|.+-..+|+
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGD 486 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999984 4455556677889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 586 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 586 ~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
++.|..+|.-+++.... +..-++.-+ |... +.+.|.+++|..+|++.|...+... .|...|.
T Consensus 487 tdRaRaifelAi~qp~l-dmpellwka---YIdF--------Ei~~~E~ekaR~LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 487 TDRARAIFELAISQPAL-DMPELLWKA---YIDF--------EIEEGEFEKARALYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHHHHHhcCccc-ccHHHHHHH---hhhh--------hhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence 99999999999875432 333332222 2221 1122777777777777777766544 4444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-19 Score=192.91 Aligned_cols=447 Identities=16% Similarity=0.172 Sum_probs=326.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
..+++..+.-++..++|...+...+.+++..|.+...+...|..+...|+-++|..+...++..++.+ ...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHH
Confidence 34677778888889999999999999999999999999999999999999999999999999999988 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1065)
....+|++|+.+|..|+.++|+|...|.-++.+..+.++ ++-....-.+.++..|.....|..++..++..|++..|
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 88888888899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHH
Q 001509 288 EQLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1065)
Q Consensus 288 ~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1065)
..+.+...+.....+. ...+......+....|.+++|++.+..--..+ -+........+.++.+.+++++|+
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i---~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI---VDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH---HHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999888876542232 23455566777888899999988876654321 222334556789999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 001509 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
..|..++..+|++...+..+-.++....+.-+++ ..|...-...|...... .++.....-.++
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~----------------Rlplsvl~~eel 303 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR----------------RLPLSVLNGEEL 303 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch----------------hccHHHhCcchh
Confidence 9999999999999998888888876333344444 56666555555443211 111111111111
Q ss_pred HHHHH-HHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCC-------CcCCCCchhHHHHHHHHHHH
Q 001509 442 ESAHQ-SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN-------HVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 442 ~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~la~~~~ 513 (1065)
...+. ++...+..+.-. +.......+........+..-..++...+...+. ..+.+....+.++.++.-+-
T Consensus 304 ~~~vdkyL~~~l~Kg~p~-vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS-VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHHHhhcCCCc-hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 11111 111222111000 0000000000000000111111122222221111 11233345667788899999
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHH
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 593 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 593 (1065)
..|+++.|..++..++...|..++.|...|.++...|++++|..++..+.+++-.+..+-..-+...++.++.++|.+..
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777777667888888889999998887
Q ss_pred HHhhh
Q 001509 594 RAASD 598 (1065)
Q Consensus 594 ~~al~ 598 (1065)
.+...
T Consensus 463 skFTr 467 (700)
T KOG1156|consen 463 SKFTR 467 (700)
T ss_pred HHhhh
Confidence 76544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=188.57 Aligned_cols=345 Identities=18% Similarity=0.171 Sum_probs=260.6
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1065)
.+|.+..-++.+|..++..|++..|+..|-.++..+|++..+++..|.+|+..|+-..|+..+.+++++.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3456677889999999999999999999999999999999999999999999999999999999999999999 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEAL---VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 279 (1065)
.|.+++++|.++.|...|..++..+|++.... -.++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 99999999999999999999999999654322 111111100
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHH
Q 001509 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1065)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1065)
..+......++..|++..|+.+...++. ..|..+..+...+.||+..|.+.
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1112223344556677777777777766 44666666777788888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 001509 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439 (1065)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g 439 (1065)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|+........++.... .-...-+.-....+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv---~K~les~e~~ie~~ 283 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV---VKSLESAEQAIEEK 283 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 888888888777777888888888888888888888888888888888765432222211100 00111133445667
Q ss_pred CHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChH
Q 001509 440 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 519 (1065)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 519 (1065)
+|.+++...++.+...|. ..+....+...+..|+..-+++.
T Consensus 284 ~~t~cle~ge~vlk~ep~---------------------------------------~~~ir~~~~r~~c~C~~~d~~~~ 324 (504)
T KOG0624|consen 284 HWTECLEAGEKVLKNEPE---------------------------------------ETMIRYNGFRVLCTCYREDEQFG 324 (504)
T ss_pred hHHHHHHHHHHHHhcCCc---------------------------------------ccceeeeeeheeeecccccCCHH
Confidence 777777777777663221 11223334445677888889999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Q 001509 520 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 575 (1065)
Q Consensus 520 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 575 (1065)
+|+..+..++..+|+++.++...+..|+....|+.|+..|+++.+.++++..+..-
T Consensus 325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999988766543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-21 Score=217.44 Aligned_cols=303 Identities=18% Similarity=0.164 Sum_probs=212.6
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCC
Q 001509 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423 (1065)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 423 (1065)
..+..|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+.++++++...+.....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------- 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------- 105 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------
Confidence 355567778888888888888888888888888888888888888888888888888877643322210
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 424 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
...++..+|.+|...|+++.|+.+|.+++. ..|....
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~-------------------------------------------~~~~~~~ 142 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVD-------------------------------------------EGDFAEG 142 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-------------------------------------------CCcchHH
Confidence 013577788888888888888888888776 3344666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhh
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
++..++.++...|++++|+..+..++...|... ..+..+|.++...|++++|+.+|++++..+|+...++..+|.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 777888888888888888888888887766542 245667777788888888888888888888877777777777
Q ss_pred hhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHH
Q 001509 579 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 658 (1065)
Q Consensus 579 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 658 (1065)
++...|++++|+..|.+++...|.....++..++.+ |... |++++|+..+++++..+|+...+ ..+
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~-~~~~------------g~~~~A~~~l~~~~~~~p~~~~~-~~l 288 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMEC-YQAL------------GDEAEGLEFLRRALEEYPGADLL-LAL 288 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCchHH-HHH
Confidence 777777777777777777766554334445566666 6666 77777777777777777665433 666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 001509 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA--QGNFALAMKMYQNCLR 719 (1065)
Q Consensus 659 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 719 (1065)
+.++...|++++|+.+|.+++...| +++.+...++..+.. .|+..+|+..+++.++
T Consensus 289 a~~~~~~g~~~~A~~~l~~~l~~~P-----~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 289 AQLLEEQEGPEAAQALLREQLRRHP-----SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc-----CHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 7777777777777777777776665 333332222222211 3466666666666665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=213.19 Aligned_cols=300 Identities=21% Similarity=0.168 Sum_probs=259.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc---hHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---GAIRLGIG 204 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~la 204 (1065)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++...+... ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 346677899999999999999999999999999999999999999999999999999999988543321 24678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 001509 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-----MALNYLANHFF 279 (1065)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 279 (1065)
.++...|+++.|...|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+. ..+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999888753 24567899999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-hhhhhhHHHHHHHcCCH
Q 001509 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 358 (1065)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~ 358 (1065)
..|++++|+..+.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999864 556789999999999999999999999999974 2333 45677899999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 001509 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF-- 436 (1065)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~-- 436 (1065)
++|+..+++++...|+... +..++.++...|++++|+.+|++++...|++.. +..+...+.
T Consensus 266 ~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~----------------~~~l~~~~~~~ 328 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRG----------------FHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH----------------HHHHHHHhhhc
Confidence 9999999999999998654 488999999999999999999999999998764 222222322
Q ss_pred -HcCCHHHHHHHHHHHHc
Q 001509 437 -EKGEFESAHQSFKDALG 453 (1065)
Q Consensus 437 -~~g~~~~A~~~~~~al~ 453 (1065)
..|+..+++..+++++.
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 25689999999998876
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-20 Score=197.39 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
....|+..+..|+|+.|+.+|..++.++|.|...+.+...+|...|+|.+|+..-.+..+++|+. +..|..+|..+.-+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999999999999999 67799999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
|+|++|+..|.+.|+.+|+|...+..|+.++
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999988888887
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-18 Score=190.12 Aligned_cols=420 Identities=19% Similarity=0.144 Sum_probs=342.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001509 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1065)
+++.++-.|.......|++..+.+.|++++... -...+.|+.++.++...|.-..|+.+.+......+.+++....+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~---~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS---FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 678889999999999999999999999988653 34568999999999999999999999999887543333444445
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCc
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYP-----DNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~ 409 (1065)
+.-..|+...+.+++++.+..+++.... -.+..+..+|.+|..+ ....++++.++++++.+|+|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5555666778999999999999998421 1256788888888755 23568999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcc
Q 001509 410 AQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489 (1065)
Q Consensus 410 ~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (1065)
+ .+.+.++.-|..+++...|..+.++++..
T Consensus 478 p---------------~~if~lalq~A~~R~l~sAl~~~~eaL~l----------------------------------- 507 (799)
T KOG4162|consen 478 P---------------LVIFYLALQYAEQRQLTSALDYAREALAL----------------------------------- 507 (799)
T ss_pred c---------------hHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----------------------------------
Confidence 8 46888999999999999999999999984
Q ss_pred cCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Q 001509 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569 (1065)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 569 (1065)
.....+..|..++.++...+++..|+.+...++...|++.........+-...++.++|+..+...+.+-...
T Consensus 508 -------~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 508 -------NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred -------cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 2345788999999999999999999999999999999988877777788888999999999998888765433
Q ss_pred hHHH---------HHhhhhhccccchHHHHHHHHHhhhcC-------------------CCCCh------HHHHhhHHHH
Q 001509 570 PNAL---------SMLGDLELKNDDWVKAKETFRAASDAT-------------------DGKDS------YATLSLGNWN 615 (1065)
Q Consensus 570 ~~~~---------~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------~~~d~------~~~~~lg~~~ 615 (1065)
+.+. ...+.+.....+..+|...+..+.... +.++. ..|...+..
T Consensus 581 ~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~- 659 (799)
T KOG4162|consen 581 YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL- 659 (799)
T ss_pred hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHH-
Confidence 3222 223333444455556665555544310 11111 123344444
Q ss_pred HHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHH
Q 001509 616 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 695 (1065)
Q Consensus 616 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 695 (1065)
|... ++.+.|..++.++-.++|..++.++..|.++...|++.+|...|..++..+| +++.+..
T Consensus 660 ~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-----~hv~s~~ 722 (799)
T KOG4162|consen 660 FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-----DHVPSMT 722 (799)
T ss_pred HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-----CCcHHHH
Confidence 5555 8889999999999999999999999999999999999999999999999998 6788999
Q ss_pred HHHHHHHHcCCHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHH
Q 001509 696 NLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 765 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 765 (1065)
.+|.++...|+..-|.. ++..+++. ++.++++|+++|.++.+.|+.+.|..+|.-++++.+.+|+..|
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 99999999999988888 99999998 6778999999999999999999999999999999999998765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-18 Score=182.83 Aligned_cols=539 Identities=14% Similarity=0.087 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
..+++..+.-.+..++|...+...+.+++..|+. +......|..+..+|+.++|......++..++.+...|..+|.++
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eH-geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEH-GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCcc-chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 3466777777889999999999999999999999 777899999999999999999999999999999999999999999
Q ss_pred HHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCH
Q 001509 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 242 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1065)
....+ |++|+.+|+.|+.+.|+|..++..++.+..+.+++......-...++. .|.....|...+.+++-.|++
T Consensus 86 R~dK~---Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 86 RSDKK---YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred hhhhh---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHH
Confidence 99988 999999999999999999999999999999999999988887777766 366678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC-----chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001509 322 EKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 396 (1065)
..|....+...+.....+. ...+.....+++...|.++.|++.+...-..--+........+.++..++++++|.
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999888875432222 22345566778888899999888877655444445667777899999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHcccchhhhcccccchhhhhhhhh
Q 001509 397 ELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH-QSFKDALGDGIWLTLLDSKTKTYVIDASAS 475 (1065)
Q Consensus 397 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 475 (1065)
..|...+..+|++..- +..+-.++....+--+++ ..|...-+..+
T Consensus 240 ~~y~~Ll~rnPdn~~Y---------------y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~------------------- 285 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDY---------------YEGLEKALGKIKDMLEALKALYAILSEKYP------------------- 285 (700)
T ss_pred HHHHHHHhhCchhHHH---------------HHHHHHHHHHHhhhHHHHHHHHHHHhhcCc-------------------
Confidence 9999999999998752 222333332222222333 33333332211
Q ss_pred HHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHcCCHHH
Q 001509 476 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV-LYRLILFKYQDYVDAYLRLAAIAKARNNLQL 554 (1065)
Q Consensus 476 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 554 (1065)
.......++.....-.++..... ++...++.. -+.....+-.+|.. +..
T Consensus 286 -------------------------r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl~SLyk~---p~k 335 (700)
T KOG1156|consen 286 -------------------------RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDLRSLYKD---PEK 335 (700)
T ss_pred -------------------------ccccchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhhHHHHhc---hhH
Confidence 01111111111111111222111 112222110 01111111111111 000
Q ss_pred HHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhH
Q 001509 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634 (1065)
Q Consensus 555 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~ 634 (1065)
.- ++++.+ .-|...-............-...|..-.+.+..++.- |... |++
T Consensus 336 ~~-~le~Lv--------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh-~D~~------------g~~ 387 (700)
T KOG1156|consen 336 VA-FLEKLV--------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH-YDKL------------GDY 387 (700)
T ss_pred hH-HHHHHH--------------HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH-HHHc------------ccH
Confidence 00 122111 1111000000000000000001111122233333333 4444 999
Q ss_pred HHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHHHHcCCHHHHHH
Q 001509 635 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN--LAHVYFAQGNFALAMK 712 (1065)
Q Consensus 635 ~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~--lg~~~~~~g~~~~A~~ 712 (1065)
+.|..++..++..-|.-+..+..-|.++...|.+++|..++..+.+.+ .++.++| -|......++.++|..
T Consensus 388 ~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-------~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 388 EVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-------TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------chhHHHHHHHHHHHHHccccHHHHH
Confidence 999999999999999999999999999999999999999999999876 4556555 6777888999999998
Q ss_pred HHHHHHHHhcCC--Cc------HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHH-HHhhHHHHHH-----
Q 001509 713 MYQNCLRKFYYN--TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG-VAMQKFSAST----- 778 (1065)
Q Consensus 713 ~~~~al~~~~~~--~~------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla-~~~~~~~~~~----- 778 (1065)
+..+.-+. +.+ .+ .+....-|.+|+++|++..|++-|..+-..+..-..-+|..- .|+.++.-..
T Consensus 461 ~~skFTr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll 539 (700)
T KOG1156|consen 461 VLSKFTRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELL 539 (700)
T ss_pred HHHHhhhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHH
Confidence 87664332 111 11 333445589999999999999888777666543333333322 3333332221
Q ss_pred -HhhhcCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 001509 779 -LQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810 (1065)
Q Consensus 779 -l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~~~ 810 (1065)
+....++.+.. +.....|++||=.|...+
T Consensus 540 ~~~d~L~~~p~y---~~Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 540 EWEDNLRSSPYY---LRAAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHhhccChHH---HHHHHHHHHHHHHHhcCc
Confidence 23333444444 345678999998888765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-20 Score=182.10 Aligned_cols=321 Identities=16% Similarity=0.119 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1065)
Q Consensus 80 ~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 159 (1065)
+..+.-..-||.-++..|.+. .|+..|..++..+|++-.+++.+|.+|+..|+-.-|+.-|.+++.+.|
T Consensus 35 ~advekhlElGk~lla~~Q~s-----------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp 103 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLS-----------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP 103 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc
Confidence 344555666777777666554 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--h------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--G------------AIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
+...+....|.+++++|.++.|...|..++..+|++. . ..+......++..|+...|+.....+++
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999661 1 1223345566778999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCch
Q 001509 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305 (1065)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 305 (1065)
+.|-+...+...+.+|...|+ +..|+..++.+-++..++...++.++.+++..|+...++......++..+......
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e---~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGE---PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999876554333
Q ss_pred HHHHHH---------HHHHHHcCCHHHHHHHHHHHHHhcCC-CCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 306 HSYYNL---------ARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 306 ~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
..|-.+ +......++|.+++...++.++.-+. .+-....+-.+..|+..-|++.+|+..+.+++.++|++
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~d 340 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDD 340 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchH
Confidence 333322 44456688999999999999874332 22233445567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 414 (1065)
..++...+..|+-...|+.|+.-|+++.+.++++..++.
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999999999999999886544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-18 Score=190.56 Aligned_cols=430 Identities=17% Similarity=0.141 Sum_probs=346.8
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHH
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1065)
+++..|-.+...+...|++..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |+++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 5777888888999999999999999999998877788999999999999999999999999999998 77767777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHccc--------hHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
..|+...+.+++++.+..+++..... .+.++..+|.+|...-. .....++++.++++++.+|+|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 88888999999999999999984321 34567777777654321 223578999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHH
Q 001509 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1065)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1065)
.+.++.-|...++...|......++...+ ...+.+|+.++.++...+++..|+.+...++..++ .+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhhh
Confidence 99999999999999999999999998853 45679999999999999999999999999998654 33334455556
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHH
Q 001509 351 VQLKLGDFRSALTNFEKVLEIYPDNCETL---------KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR---TLLKK 418 (1065)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~~l~~ 418 (1065)
+-...++.++|+..+...+........+- ...+.+....++..+|+..+.++...-....... ..+++
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 66678999999999988887644322222 2223333333455666666665554321000000 00000
Q ss_pred c----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhccc
Q 001509 419 A----GEEV----PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 490 (1065)
Q Consensus 419 ~----~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (1065)
. +... ...+|...+..+...++.++|..++.++..
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~------------------------------------- 678 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK------------------------------------- 678 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------
Confidence 0 0000 036788889999999999999999999887
Q ss_pred CCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHCCC
Q 001509 491 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE--LVNEALKVNGK 568 (1065)
Q Consensus 491 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~--~~~~al~~~p~ 568 (1065)
..|..+.+|+..|.++...|+..+|...|..++..+|+++.+...+|.++...|+...|.. ++..+++++|.
T Consensus 679 ------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 679 ------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred ------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 4566889999999999999999999999999999999999999999999999999988888 99999999999
Q ss_pred ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCC
Q 001509 569 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 603 (1065)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 603 (1065)
++++|+.+|.++.+.|+.+.|..+|..+++..++.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999976653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-18 Score=177.00 Aligned_cols=193 Identities=14% Similarity=0.006 Sum_probs=110.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHH
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 588 (1065)
+.+++...++..|+.+-.+++..+|.+..+++..|.++...+++.+|+-.|+.+..+.|...+.|..|..+|+..|.+.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhhhcCCCCChHHHHhhH-HHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCC
Q 001509 589 AKETFRAASDATDGKDSYATLSLG-NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667 (1065)
Q Consensus 589 A~~~~~~al~~~~~~d~~~~~~lg-~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 667 (1065)
|.-....++...+. ...++..+| .+++... ..-++|..++++.|.++|....+.+.++.++...|.
T Consensus 387 A~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp------------~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 387 ANALANWTIRLFQN-SARSLTLFGTLVLFPDP------------RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHHHHHHHHHHhhc-chhhhhhhcceeeccCc------------hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 44444444433322 222332232 2212222 456789999999999999988888888888888888
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
++.++.++++.+...| +...+..||.++...+.+.+|+..|..|++.
T Consensus 454 ~~D~i~LLe~~L~~~~------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 454 TKDIIKLLEKHLIIFP------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred cchHHHHHHHHHhhcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888888888877764 3456666677766666666666666666665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-16 Score=162.92 Aligned_cols=492 Identities=16% Similarity=0.191 Sum_probs=348.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
...|+..++.+.-+...|...|..-..++++..|..+|+++|..+..+ ..+|+..+.+-++......|...|.+++.+-
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 345667777777788889999999999999999999999999998777 6678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH
Q 001509 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1065)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1065)
|.-...|+....+-...|+ +.-|.+.|.+-+...|+. .+|......-
T Consensus 138 PRVdqlWyKY~ymEE~LgN---i~gaRqiferW~~w~P~e-qaW~sfI~fE----------------------------- 184 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGN---IAGARQIFERWMEWEPDE-QAWLSFIKFE----------------------------- 184 (677)
T ss_pred chHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHcCCCcH-HHHHHHHHHH-----------------------------
Confidence 9888888888888888888 888888888888887743 3444444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1065)
.+.+..+.|...|++.+- ....+..+...+..-.+.|+..-|...|+.++....++ ...+...+.
T Consensus 185 --------lRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~ 252 (677)
T KOG1915|consen 185 --------LRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAE 252 (677)
T ss_pred --------HHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555442 12233445555555555566666666666555543332 223444455
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHcccchhhhc
Q 001509 385 IYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE---SAHQSFKDALGDGIWLTLL 461 (1065)
Q Consensus 385 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~ 461 (1065)
.-..+..++.|..+|+-++..-|.+..- +++..+...--+-|+.. .++..=++
T Consensus 253 fEe~qkE~ERar~iykyAld~~pk~rae-------------eL~k~~~~fEKqfGd~~gIEd~Iv~KRk----------- 308 (677)
T KOG1915|consen 253 FEERQKEYERARFIYKYALDHIPKGRAE-------------ELYKKYTAFEKQFGDKEGIEDAIVGKRK----------- 308 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHhcchhhhHHHHhhhhh-----------
Confidence 5556667777888888777777765320 22323233333334322 11111000
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHH----
Q 001509 462 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD---- 537 (1065)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 537 (1065)
.++ ...+..+|.+..+|+.+.++....|+.+.-.+.|++++..-|....
T Consensus 309 --------------------~qY-------E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W 361 (677)
T KOG1915|consen 309 --------------------FQY-------EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYW 361 (677)
T ss_pred --------------------hHH-------HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHH
Confidence 000 0111267788999999999999999999999999999998875422
Q ss_pred -----HHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCC----hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHH
Q 001509 538 -----AYLRLAAI-AKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 607 (1065)
Q Consensus 538 -----a~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~ 607 (1065)
.|++.+.. -+...+.+.+..+|+.++.+-|.. ..+|.+.+....++.+...|...+-.++..+|....+-
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk 441 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHH
Confidence 33333222 235679999999999999999865 46888999999999999999999999999998744331
Q ss_pred HHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Q 001509 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF 687 (1065)
Q Consensus 608 ~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 687 (1065)
....+ -.+. +.++....+|.+.|...|.|..+|...|.+-...|+.+.|..+|+-++....
T Consensus 442 --~YIel-ElqL------------~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~---- 502 (677)
T KOG1915|consen 442 --GYIEL-ELQL------------REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA---- 502 (677)
T ss_pred --HHHHH-HHHH------------hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----
Confidence 11122 2333 8999999999999999999999999999999999999999999999987542
Q ss_pred CcchHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-----Hhh-----------cHHHHHHHH
Q 001509 688 VQMPDV-WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY-----EAE-----------QWQDCKKSL 750 (1065)
Q Consensus 688 ~~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~-----~~g-----------~~~~A~~~~ 750 (1065)
.++|.+ |-.....-...|.++.|..+|++.|... +...++...|..-. ..+ ....|..+|
T Consensus 503 ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt---~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~if 579 (677)
T KOG1915|consen 503 LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT---QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIF 579 (677)
T ss_pred cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc---ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHH
Confidence 245554 4455666678899999999999999873 33335544444333 334 556788889
Q ss_pred HHHHHhCC
Q 001509 751 LRAIHLAP 758 (1065)
Q Consensus 751 ~kal~~~P 758 (1065)
.+|.....
T Consensus 580 erAn~~~k 587 (677)
T KOG1915|consen 580 ERANTYLK 587 (677)
T ss_pred HHHHHHHH
Confidence 88877643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-17 Score=166.45 Aligned_cols=415 Identities=13% Similarity=0.063 Sum_probs=226.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
.+.......+.+|...++-+.|+.....+..... .+...+.++..+-.-++..++.-.|...+...|--..+...+..
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r--~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLR--SPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcccc--chhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 3455666777777777777777765544322211 12334445555555555556666666666655533333222222
Q ss_pred HHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001509 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN-YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 240 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1065)
.-... ++.+ ..-...+...|..+..+. ..+..+...+++..+...+-.+-.. ..-+.+...+..+|.+++..
T Consensus 173 l~v~g-----~e~~-S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~-~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 173 LGVNG-----NEIN-SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN-TTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred Hhhcc-----hhhh-hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh-ccCCccHHHHHHHhhhhhhh
Confidence 22111 1111 111122333444433332 2244444445554444433332221 12344555666666666666
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
|++.+|+..|+++.. .+|..+...-..|.++...|+++.-..+...++.+......-|+.-+.+++..+++..|+.+
T Consensus 246 Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred cCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 666666666666554 34555555555566666666666666655555555544555555556666666666666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHH
Q 001509 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 478 (1065)
Q Consensus 399 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1065)
-++++..+|.+.. .+...|.++...|+..+|+-.|+.+..
T Consensus 323 ~eK~I~~~~r~~~---------------alilKG~lL~~~~R~~~A~IaFR~Aq~------------------------- 362 (564)
T KOG1174|consen 323 VEKCIDSEPRNHE---------------ALILKGRLLIALERHTQAVIAFRTAQM------------------------- 362 (564)
T ss_pred HHHHhccCcccch---------------HHHhccHHHHhccchHHHHHHHHHHHh-------------------------
Confidence 6666666666553 344446666666666666666666655
Q ss_pred hhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHH-HHHH-HcCCHHHHH
Q 001509 479 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAK-ARNNLQLSI 556 (1065)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la-~~~~-~~g~~~~A~ 556 (1065)
..|....+|-.+..+|...|++.+|.-..+.++...|.++.++..+| .++. .-.--++|.
T Consensus 363 ------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 363 ------------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHH
Confidence 33445556666666666666666666666666666666666665554 2222 222335566
Q ss_pred HHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHH
Q 001509 557 ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 636 (1065)
Q Consensus 557 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~ 636 (1065)
+++++++.+.|....+-..++.++...|.+..++..+++.+...+ |......||++ +... +.+++
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D~~LH~~Lgd~-~~A~------------Ne~Q~ 489 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--DVNLHNHLGDI-MRAQ------------NEPQK 489 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--ccHHHHHHHHH-HHHh------------hhHHH
Confidence 666666666666666666666666666666666666666665544 44455556666 5555 66666
Q ss_pred HHHHHHHHHhhCCcchHHHhHHH
Q 001509 637 AKELYTRVIVQHTSNLYAANGAG 659 (1065)
Q Consensus 637 A~~~~~~~l~~~p~~~~a~~~la 659 (1065)
|+..|..+|.++|++-.+.-++-
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHH
Confidence 66666666666666655555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-16 Score=159.46 Aligned_cols=333 Identities=15% Similarity=0.128 Sum_probs=215.7
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCC
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
.+.++.+.+..-.|.+|+.+|.+++..+|........++.||+++.-++-+.+++.-.+...|+++.+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA------------ 221 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIA------------ 221 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHH------------
Confidence 34566666666677777777777777777777777777777777777777777777777777777643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 504 (1065)
.+..++.+++.=+-..|..-.+...... +...+.+
T Consensus 222 ---~NLkacn~fRl~ngr~ae~E~k~ladN~------------------------------------------~~~~~f~ 256 (557)
T KOG3785|consen 222 ---KNLKACNLFRLINGRTAEDEKKELADNI------------------------------------------DQEYPFI 256 (557)
T ss_pred ---HHHHHHHHhhhhccchhHHHHHHHHhcc------------------------------------------cccchhH
Confidence 3444555555433333333333332210 0000000
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhcccc
Q 001509 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584 (1065)
Q Consensus 505 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 584 (1065)
-+.+-.-+.--.+-+.|+..+-..+..- +++..+|+..|..+++..+|+.+++. ++|..|.-+...|.++...|
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhh
Confidence 0000000000122345555554444433 45778888888888888888877765 67888888888888877777
Q ss_pred chHHHHHHHHHhh-------hcCCC-CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHh
Q 001509 585 DWVKAKETFRAAS-------DATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 656 (1065)
Q Consensus 585 ~~~~A~~~~~~al-------~~~~~-~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 656 (1065)
+--...++++-+- ..... ......-+++.. ++.. .+++.-+.++..+-...-++....+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------------~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------------FQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------------HHHHHHHHHHHHHHHHhcCcchhhh
Confidence 6433333333222 11111 122233456666 7777 8899999888888888888888889
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 736 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~ 736 (1065)
++++.++..|++.+|.++|-++....- .+.......|+.||...+.+..|..+|-+ .........++-.++..
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIAND 470 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHH
Confidence 999999999999999999988754321 12334455789999999999999988754 21112226677788999
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 737 HYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 737 ~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
+|+.+++--|.+.|..+-.++|+.
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCCc
Confidence 999999999999999888888854
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=194.92 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
..+|.+++..|++++|+.++.+.+... .+|.++..|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 466999999999999999997765421 146678889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHH
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 588 (1065)
|.+....++++.|+..|++++..++.++..+.+++.+ ...+++.+|+.++..+.+..+ ++..+..+..++...++++.
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999888 799999999999999988764 57777788888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCC
Q 001509 589 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667 (1065)
Q Consensus 589 A~~~~~~al~~~~-~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 667 (1065)
+...+.++....+ ..++..+..+|.+ +... |+.++|+.+|++++..+|++..+...+++++...|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999775432 3577788889999 8888 999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 001509 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 747 (1065)
Q Consensus 668 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 747 (1065)
++++..++.......| .++.+|..+|.+|..+|++++|+.+|+++++. .+.++.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999888876 67889999999999999999999999999988 6788999999999999999999999
Q ss_pred HHHHHHHHh
Q 001509 748 KSLLRAIHL 756 (1065)
Q Consensus 748 ~~~~kal~~ 756 (1065)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-14 Score=153.58 Aligned_cols=628 Identities=12% Similarity=0.118 Sum_probs=419.1
Q ss_pred hcCCChHHHHHHHHHHHHcCCHH-HHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhc--hhhhhhhhhHHHHH
Q 001509 35 AEQAPLDLWLIIAREYFKQGKVE-QFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG--KIETKQREKEEHFI 111 (1065)
Q Consensus 35 ~e~~~~~~~~~~a~~y~~~g~~~-~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g--~~~~~~~~k~~~~~ 111 (1065)
..|-+...|..... +++|... +-..+|++++..-+.+ +.+...|++.- .+. .....+.-|.
T Consensus 22 Rnp~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp~s-------------ykiW~~YL~~R~~~vk-~~~~T~~~~~ 85 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELPGS-------------YKIWYDYLKARRAQVK-HLCPTDPAYE 85 (835)
T ss_pred cCchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCCCc-------------hHHHHHHHHHHHHHhh-ccCCCChHHH
Confidence 35567778866433 3444444 4455678876542211 12333333211 111 0011244566
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
.--.+|++++..-..-|..|+.....+..+|+...-...|+++|..-|- +...|-..-......+-..-++..|++.|
T Consensus 86 ~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 7788888888877778899999999999999999999999999998773 45566666666777888899999999999
Q ss_pred HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
+..|.. .-.....+...+++++|.+.+...+.. .|.+...|..+..+....-+...--..-..++..+.
T Consensus 166 k~~P~~----~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KVAPEA----REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hcCHHH----HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 999987 233456677889999999999988754 345667788787777665442222223345666666
Q ss_pred hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH-H-HHHhcCCCC
Q 001509 263 IYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM-A-SVKEINKPH 339 (1065)
Q Consensus 263 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~-al~~~~~~~ 339 (1065)
..++. ...|..||..|.+.|.+++|..+|+.++...-...+...++... -.|++..-.+. . +.....+..
T Consensus 242 rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Y-------a~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 242 RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAY-------AQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHH-------HHHHHHHHHHHHhhhhhcccChh
Confidence 66654 46788899999999999999999999886542222111111111 11211111100 0 100111111
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQARTLLKK 418 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~l~~ 418 (1065)
+....-..++..-.-......-+ =.-++..+|.+..-|.....++ .|+..+-+..|..++. .+|...
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka-------- 382 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLL--NSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKA-------- 382 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHH--HHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccC--------
Confidence 11122222222211111111111 1123456888888887766654 6788899999998876 455433
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCC
Q 001509 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 498 (1065)
Q Consensus 419 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 498 (1065)
...+..+|..+|.+|...|+.+.|...|.++..... ..-
T Consensus 383 --~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y---------------------------------------~~v 421 (835)
T KOG2047|consen 383 --VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY---------------------------------------KTV 421 (835)
T ss_pred --CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc---------------------------------------cch
Confidence 112236899999999999999999999999986321 012
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC------------------ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVN 560 (1065)
Q Consensus 499 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~a~~~la~~~~~~g~~~~A~~~~~ 560 (1065)
.+...+|.+.|..-....+++.|+.+.+.+...-. .....|..++.+....|-++.....|+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 23578899999999999999999999998874211 113467778888888999999999999
Q ss_pred HHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHH-HHhhHHHHHHHHHhhhhcChhHHhhhHHHHHH
Q 001509 561 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA-TLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 639 (1065)
Q Consensus 561 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~-~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 639 (1065)
+++.+---.|.+..+.|.++....-++++.+.|++.+.+.+.+..+- |...... +.. +... ...+.|..
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk-fi~--rygg-------~klEraRd 571 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK-FIK--RYGG-------TKLERARD 571 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH-HHH--HhcC-------CCHHHHHH
Confidence 99999988999999999999999999999999999999887766552 2221111 111 1111 67899999
Q ss_pred HHHHHHhhCCcc--hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHc----CCHHHHHHH
Q 001509 640 LYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ----GNFALAMKM 713 (1065)
Q Consensus 640 ~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~ 713 (1065)
+|+++|..-|.. -..+...+.+-.+.|....|+.+|+++-...+ +.-.+.+=++|... =-...-..+
T Consensus 572 LFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~-------~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 572 LFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK-------EAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 999999988752 23344456666677999999999999876553 22233333333321 012345678
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 714 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 714 ~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
|++|++..|+..-...-...+..-.+.|..+.|+.+|.-.-++.|-
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 9999998665555666777888888999999999999988887643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=180.83 Aligned_cols=303 Identities=15% Similarity=0.070 Sum_probs=246.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
.+..|...+..|+++.|...+.++.+..|+....++..|.++...|+++.|..+|.++.+..|++...+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 35678888999999999999999999999888899999999999999999999999999999988445667679999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHH
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1065)
|+++.|...++.+++..|+++.++..++.++...|+ ++.|...+.+..+..+.++.... .....+...+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999987655544332 12222233344444
Q ss_pred HHHHHHHHHhccC-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 287 A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
....+..+....+ ..+..+..+..++..+...|++++|...+.++++..++++.... ...........++...++..+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHH
Confidence 4455555555432 22357899999999999999999999999999985443322110 122333344568899999999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 001509 366 EKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441 (1065)
Q Consensus 366 ~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~ 441 (1065)
++.++.+|+++ ..+..+|.++++.|++++|..+|+ .++...|+.. .+..+|.++...|+.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~----------------~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN----------------DLAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH----------------HHHHHHHHHHHcCCH
Confidence 99999999999 889999999999999999999999 5777888765 355889999999999
Q ss_pred HHHHHHHHHHHc
Q 001509 442 ESAHQSFKDALG 453 (1065)
Q Consensus 442 ~~A~~~~~~al~ 453 (1065)
++|..+|++++.
T Consensus 387 ~~A~~~~~~~l~ 398 (409)
T TIGR00540 387 AEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-17 Score=161.76 Aligned_cols=242 Identities=19% Similarity=0.213 Sum_probs=111.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHH
Q 001509 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1065)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1065)
+|.+|+..|-+..|.+.++..+... ..++.+..++.+|.+..+...|+..|...++ .-|..+..+..++.++.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~----~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQF----PHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcC----CchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHH
Confidence 4444444444444444444444432 1234444444444444444444444444444 22333444444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
.++++++|+++|+.+++.+|.+.++.-.+|.-|+-.++.+-|+.+|++++.+.-.++ ++++|+|.
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp---------------eLf~NigL 366 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP---------------ELFCNIGL 366 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh---------------HHHhhHHH
Confidence 444444444444444444444444444444444444444444444444444443333 34444444
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
+++-.++++-++..|++++.... .+.....+|||+|.+..
T Consensus 367 CC~yaqQ~D~~L~sf~RAlstat----------------------------------------~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 367 CCLYAQQIDLVLPSFQRALSTAT----------------------------------------QPGQAADVWYNLGFVAV 406 (478)
T ss_pred HHHhhcchhhhHHHHHHHHhhcc----------------------------------------CcchhhhhhhccceeEE
Confidence 44444444444444444443210 11223344444444444
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhh
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 577 (1065)
..|++..|...|+-++..+|++..++++|+.+..+.|+..+|..+++.+-...|.-.+..++++
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 4444444444444444444444444444444444444444444444444444444444444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=189.48 Aligned_cols=252 Identities=12% Similarity=-0.014 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
+.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.++..+|.++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccC
Confidence 3567777777777777777777777777665533 23667777777777777777 5566777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1065)
+++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.+++..|++++|+..+.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 7777777777777777777777777777777777 7777777777777777776665555656666777777777777
Q ss_pred HHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1065)
Q Consensus 293 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1065)
+++... .|..+.++..+|.++...|++++|...+.++.. ..|....+...++..|...|+ .|...++.+++..
T Consensus 431 ~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 431 ELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 766542 244556677777777777777777777776654 445555566666667666663 6666666655543
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
-..+.....+..+|.-.|+.+.+..+ +++.+.
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22222223366667777777777666 555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-19 Score=190.54 Aligned_cols=262 Identities=24% Similarity=0.289 Sum_probs=96.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+...+++++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666665444333 444 45566666666666666666666666666666666666566555 455
Q ss_pred cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1065)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1065)
++ +.+|+.++..+++..+ ++..+..++.++...+++.++..++..+.... ..+.++..+..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 55 6666666666665443 45555556666666777777777766655422 2245567777777777777777777
Q ss_pred HHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.+|++++. ..|+...+...++.+++..|+++++...+.......|.++..+..+|.++...|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 777777777 34566666777777777777777777777777776677777777778888888888888888888777
Q ss_pred hCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
.+|+++ .++..+|.++...|+.++|..++.+++.
T Consensus 243 ~~p~d~---------------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDP---------------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-H---------------HHHHHHHHHHT-----------------
T ss_pred cccccc---------------cccccccccccccccccccccccccccc
Confidence 777777 4566777777788888888777777664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-18 Score=167.23 Aligned_cols=267 Identities=17% Similarity=0.191 Sum_probs=241.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 001509 136 QLLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1065)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1065)
.+++..++...|-..+..++... |. +..--..+|.||++.|-+.+|...++..+...|-. +.+..+..
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 34556677888877777666542 21 11222578999999999999999999999998875 67889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001509 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1065)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++.-|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
-|+.+|.+++... ...++.+.++|.|++..++++-++..|.+++.....+.....+|+++|.+....|++..|..+|
T Consensus 342 ~AlryYRRiLqmG---~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMG---AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhc---CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 9999999999885 4556999999999999999999999999999877667778899999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+-++..+|++.+++++||.+-.+.|+.+.|..++..+-...|...
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 999999999999999999999999999999999999999999866
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=188.14 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccch
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1065)
.+.+|+.+|++++.++|++ ..++..+|.|+..++ ++.+|+..++++++++|+++.++..+|.++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~- 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE- 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-
Confidence 3456666777777777766 555666666655332 25667777777777777777766666666666666
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1065)
+++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |..+..++.++.+++..|++++|+..
T Consensus 354 --~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 --YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 6667777777777777777666667777777777777777777766664 33334444455555666667667766
Q ss_pred HHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.+++.. .+|....++..+|.++...|++++|+..+.++....|....++..++.+|...|+ .|...++++++
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 6666542 1244455566666666667777777777666666666666666666666666663 55555554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-12 Score=141.55 Aligned_cols=309 Identities=14% Similarity=0.160 Sum_probs=208.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHH
Q 001509 432 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 511 (1065)
Q Consensus 432 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 511 (1065)
-.+-+..|+..+-+..|..|+..-. . .........+|..+|.+
T Consensus 354 kRV~l~e~~~~~~i~tyteAv~~vd------P-------------------------------~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 354 KRVKLYEGNAAEQINTYTEAVKTVD------P-------------------------------KKAVGSPGTLWVEFAKL 396 (835)
T ss_pred hhhhhhcCChHHHHHHHHHHHHccC------c-------------------------------ccCCCChhhHHHHHHHH
Confidence 3445567889999999999886310 0 00122245688999999
Q ss_pred HHHcCChHHHHHHHHHHHHHCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------------C
Q 001509 512 LEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------------------Y 569 (1065)
Q Consensus 512 ~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~ 569 (1065)
|...|+.+.|..+|++++...-.. ..+|...|.+-+...+++.|+.+++.+...... +
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 999999999999999998754332 668999999999999999999999998765321 2
Q ss_pred hHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC-
Q 001509 570 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH- 648 (1065)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~- 648 (1065)
..+|..++.+....|-++.....|.+++.+.-. .+...++.+.+ +... ..++++.+.|++-+.+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmf-LEeh------------~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMF-LEEH------------KYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHH-HHhh------------HHHHHHHHHHHcCCccCC
Confidence 357778888888888888888888888875432 44445555554 4444 78888999998888875
Q ss_pred -CcchHHHhHHHHHHHh---cCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 001509 649 -TSNLYAANGAGVVLAE---KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724 (1065)
Q Consensus 649 -p~~~~a~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 724 (1065)
|.-...|+..-..+.. ...++.|..+|+++++..|.. ..-.+|+..+..--.-|--..|+..|++|-......
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~---~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a 619 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPE---HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEA 619 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHH
Confidence 4444455554433332 237888999999999877621 223455566666667788888899998876552111
Q ss_pred CcHHHHH-HHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Q 001509 725 TDAQILL-YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVF 803 (1065)
Q Consensus 725 ~~~~~~~-~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~ 803 (1065)
..-..+. ++.++-.--| ....+.+|++|++.-|++..-- +|+.+ .+++..+++...|..++
T Consensus 620 ~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~----mclrF-------------AdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKARE----MCLRF-------------ADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHH----HHHHH-------------HHHhhhhhhHHHHHHHH
Confidence 1111111 1122211112 2346778888888888765443 33222 26888899999999999
Q ss_pred HHHhhcCCC
Q 001509 804 SHLSAASNL 812 (1065)
Q Consensus 804 ~~l~~~~~~ 812 (1065)
..-+..-++
T Consensus 682 a~~sq~~dP 690 (835)
T KOG2047|consen 682 AHGSQICDP 690 (835)
T ss_pred HhhhhcCCC
Confidence 887766544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-14 Score=155.78 Aligned_cols=228 Identities=15% Similarity=0.104 Sum_probs=118.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
-...+...|+|++|.....+++...|++..++...-.++++.++|++|+.+.+.-....-.+ ...+..+.|+++++..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~--~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN--SFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc--hhhHHHHHHHHHcccH
Confidence 33444455556666666666666666666666555556666666666653332221111111 1124556666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1065)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1065)
++|+..+. ..++.+...+...++++++.++ |++|+..|+...+.+.++..........-... ..-..
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~---ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~~ 162 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRLER---YDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQVQ 162 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhHH
Confidence 66666555 2344444555555666666555 66666666665555444333222111110000 00000
Q ss_pred HHhccCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCC--------CchhhhhhHHHHHHHcCCHHH
Q 001509 294 ALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPH--------EFIFPYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 294 al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~--------~~~~~~~~la~~~~~~g~~~~ 360 (1065)
.+...+.. ....+.+|+.+.++...|+|.+|++.+..++... .... ....+...++.++...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111112 2345677778888888888888888887774321 1100 112345566777777777777
Q ss_pred HHHHHHHHHHhCCCcH
Q 001509 361 ALTNFEKVLEIYPDNC 376 (1065)
Q Consensus 361 A~~~~~~~l~~~p~~~ 376 (1065)
|..+|..++..+|.+.
T Consensus 243 a~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 7777777777666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-15 Score=169.87 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+|+|..|.+.+.++.+..|.....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44566999999999999998888889999999999999999999999999999885 56677899999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHccchHhHHHHHHHHHHHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAF 261 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~la~~~~~~~~~~~~~~A~~~~~~al 261 (1065)
+.+++..|++ +.++..++.++...|+++.|...+.+..+..+.+...+. ....-....+. .+.+...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 678999999999999999999999999987554444322 11111122222 445566777888
Q ss_pred HhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001509 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1065)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1065)
...| +++.++..++..+...|++++|...++.+++..+.++.... ...........++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 8777 59999999999999999999999999999997654332111 12333344456889999999999998 4
Q ss_pred CCCch--hhhhhHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
.|+.. .....+|.++++.|++++|..+|+ .++...|+... +..+|.++.+.|+.++|..+|++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666 778899999999999999999999 57778887655 569999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-15 Score=170.50 Aligned_cols=296 Identities=13% Similarity=0.034 Sum_probs=232.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
.+..|...+..|+++.|...+.+.....+.....++..+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988877655443333444444666699999999999999999999998444455668999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHH--------HHHHHHcC
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--------ANHFFFTG 282 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------a~~~~~~g 282 (1065)
|+++.|...++++++.+|+++.++..++.++...|+ +++|+..+..+.+..+.++.....+ ........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 9999999999988777655433311 11111122
Q ss_pred CHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHH
Q 001509 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1065)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1065)
+-+....++... ....+.++.+...++..+...|+.++|...+.++++. ++ ...... ....+..+++.+++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~-~~~l~~--l~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QY-DERLVL--LIPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC-CHHHHH--HHhhccCCChHHHH
Confidence 222222222222 2224667899999999999999999999999999872 22 222222 22333559999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 001509 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 442 (1065)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~ 442 (1065)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++. .+..++.++...|+.+
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~----------------~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY----------------DYAWLADALDRLHKPE 378 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH----------------HHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999876 3567899999999999
Q ss_pred HHHHHHHHHHcc
Q 001509 443 SAHQSFKDALGD 454 (1065)
Q Consensus 443 ~A~~~~~~al~~ 454 (1065)
+|..+|++++..
T Consensus 379 ~A~~~~~~~l~~ 390 (398)
T PRK10747 379 EAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhh
Confidence 999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-15 Score=149.95 Aligned_cols=203 Identities=18% Similarity=0.244 Sum_probs=145.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHH
Q 001509 137 LLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1065)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (1065)
-++...+|..|+.+++-.+..+.... ..-+++|.|++..|+|++|+..|.-+...+ +.+..++..++.|++-+|.|.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34566788888888887765544332 566778888888899998888888877633 3346778888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1065)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1065)
|...-.+ .|+++-....+-.+..+.++. +-+-.|...+.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklndE----k~~~~fh~~Lq--------------------------------- 148 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLNDE----KRILTFHSSLQ--------------------------------- 148 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCcH----HHHHHHHHHHh---------------------------------
Confidence 8776665 455665555555555555541 11111111111
Q ss_pred hccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
+..+-...++.+++..-.|.+|+..|.+++. .+|.+......++.||+++.-|+-+.+.+.-.+...|++
T Consensus 149 -------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~---dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 149 -------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ---DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred -------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 1124455677777777888999999998887 667777777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 001509 376 CETLKALGHIYVQLGQ 391 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~ 391 (1065)
+.+.+.++..+++.=+
T Consensus 219 tiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9888888888777633
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=162.38 Aligned_cols=313 Identities=16% Similarity=0.150 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
.-....|..++...+|.+|+..|..++...|++ ...|...+.++...|+|+.|.-..+..++++|.........+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345666777777777777777777777777777 5667777777777777777777777777777777776666666666
Q ss_pred HccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHH
Q 001509 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1065)
Q Consensus 243 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1065)
..++ ..+|...++. . .++ ...
T Consensus 129 a~~~---~i~A~~~~~~--------~-------------------------------------~~~-----------~~a 149 (486)
T KOG0550|consen 129 ALSD---LIEAEEKLKS--------K-------------------------------------QAY-----------KAA 149 (486)
T ss_pred hhHH---HHHHHHHhhh--------h-------------------------------------hhh-----------HHh
Confidence 6655 4444444330 0 000 112
Q ss_pred HHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
.|+..++..+......|....+.+..+.|+...|++++|+..--.++++++.+..+++..|.+++-.++.+.|+..|+++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 23333333332222234445566778899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhh
Q 001509 403 AKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 482 (1065)
Q Consensus 403 l~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1065)
+.++|+...+....... ...+.+..-|.-.++.|++..|.++|..++.+.|.
T Consensus 230 l~ldpdh~~sk~~~~~~---k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~------------------------- 281 (486)
T KOG0550|consen 230 LRLDPDHQKSKSASMMP---KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS------------------------- 281 (486)
T ss_pred hccChhhhhHHhHhhhH---HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-------------------------
Confidence 99999987643322110 11256778899999999999999999999986552
Q ss_pred hhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 483 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
....++.+|.+.+.+...+|+..+|+...+.++.++|.++.++.+.|.++...++|++|++.|+++
T Consensus 282 --------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 282 --------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred --------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223377889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCChHHHHHhhh
Q 001509 563 LKVNGKYPNALSMLGD 578 (1065)
Q Consensus 563 l~~~p~~~~~~~~l~~ 578 (1065)
++...+ .+....+..
T Consensus 348 ~q~~~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 348 MQLEKD-CEIRRTLRE 362 (486)
T ss_pred Hhhccc-cchHHHHHH
Confidence 998765 555444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=148.29 Aligned_cols=208 Identities=23% Similarity=0.192 Sum_probs=187.9
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 421 (1065)
..+.+.+|.-|+..|++..|...++++++++|++..+|..++.+|...|..+.|.+.|++++.+.|++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----------- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----------- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----------
Confidence 356788999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCch
Q 001509 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 501 (1065)
Q Consensus 422 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 501 (1065)
++++|.|.+++.+|++++|...|.+|+... ..+..
T Consensus 104 ----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P-----------------------------------------~Y~~~ 138 (250)
T COG3063 104 ----DVLNNYGAFLCAQGRPEEAMQQFERALADP-----------------------------------------AYGEP 138 (250)
T ss_pred ----chhhhhhHHHHhCCChHHHHHHHHHHHhCC-----------------------------------------CCCCc
Confidence 589999999999999999999999999732 34557
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhc
Q 001509 502 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 581 (1065)
Q Consensus 502 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 581 (1065)
+.++.|+|.|..+.|+++.|..+|++++..+|+.+.+...++..++..|++..|..+++......+-..+.+.....+-.
T Consensus 139 s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak 218 (250)
T COG3063 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAK 218 (250)
T ss_pred chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred cccchHHHHHHHHHhhhcCCCCCh
Q 001509 582 KNDDWVKAKETFRAASDATDGKDS 605 (1065)
Q Consensus 582 ~~g~~~~A~~~~~~al~~~~~~d~ 605 (1065)
..|+-..|..+=.++...+|....
T Consensus 219 ~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 219 RLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HhccHHHHHHHHHHHHHhCCCcHH
Confidence 889988888877777777776443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-15 Score=162.54 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHhhcCC---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001509 108 EHFILATQYYNKASRIDM---H-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p---~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1065)
...+.++..+.+++...| . .+..|+.+|.++...|+++.|+..|.+++..+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445578888888886433 2 356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHh
Q 001509 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1065)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1065)
.|+++++++|++ ..+++.+|.+++..|++++|+..|++++..+|+++.....+ .+....++ +.+|+..+.+....
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422222 22233444 88888888776654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
.+... |. .+..++..|++..+ ..+..+...... .|..+.+|+.+|.++...|++++|+.+|++++.
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32221 21 23444445555433 233333322111 122334444455555555555555555544443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=167.32 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=209.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 508 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 508 (1065)
+..|+.+++.|+..+|.-.|+.++. .+|.++.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 4569999999999999999999987 678899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHH-------hhhhhc
Q 001509 509 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM-------LGDLEL 581 (1065)
Q Consensus 509 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------l~~~~~ 581 (1065)
|.+....++-..|+..+.++++++|++..++..||..|...|.-.+|..++.+.+...|........ ...-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999888754322211 000112
Q ss_pred cccchHHHHHHHHHhhhcCC-CCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 582 KNDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 582 ~~g~~~~A~~~~~~al~~~~-~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
....+....+.|-.+....+ ..|+.....||.+ |+.. +.|++|+.+|+.+|..+|+|...|+.||-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 22234455566666555444 3688888899999 8888 99999999999999999999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC---c-----HHHHHH
Q 001509 661 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---D-----AQILLY 732 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~-----~~~~~~ 732 (1065)
.+....+..+|+..|++++++.| ....+++|||.+|+.+|-|.+|+.+|-.||...+... + ..+|-.
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 6778999999999999999999999999998754421 1 245555
Q ss_pred HHHHHHHhhcHHHH
Q 001509 733 LARTHYEAEQWQDC 746 (1065)
Q Consensus 733 lg~~~~~~g~~~~A 746 (1065)
|=.++...++.+-+
T Consensus 548 LR~als~~~~~D~l 561 (579)
T KOG1125|consen 548 LRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHcCCchHH
Confidence 55555555555533
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-14 Score=161.69 Aligned_cols=284 Identities=12% Similarity=0.092 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVG-KGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~g~~~~Al~~~ 185 (1065)
|+|..|.+.+.+.....+ +|..++. .+......|+++.|..+|.++.+.+|++..+ ....+.++...|+++.|+..+
T Consensus 98 Gd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455588888887665543 3444444 4667799999999999999999999998544 445599999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHccchHhHHHHHHHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--------ALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--------~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
+++...+|++ +.++..++.+|...|+++.|+..+.++.+..+.+..... .+........+ .+.....+
T Consensus 177 ~~~~~~~P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---~~~l~~~w 252 (398)
T PRK10747 177 DKLLEVAPRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---SEGLKRWW 252 (398)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHH
Confidence 9999999999 778899999999999999999999999987776544322 11111111111 34444455
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001509 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1065)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1065)
+..-...|+++.+...++..+...|+.++|...+..+++.. .++......+. ...+++++++..++..++ .
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~----~~~~l~~l~~~--l~~~~~~~al~~~e~~lk---~ 323 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ----YDERLVLLIPR--LKTNNPEQLEKVLRQQIK---Q 323 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHHHHHHhh--ccCCChHHHHHHHHHHHh---h
Confidence 55555667899999999999999999999999999998842 23333333333 345999999999999998 6
Q ss_pred CCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
.|+....++.+|.++...+++.+|...|++++...|++ ..+..++.++...|+.++|..+|++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67888889999999999999999999999999999985 556789999999999999999999998754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=164.34 Aligned_cols=234 Identities=16% Similarity=0.206 Sum_probs=188.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
+..|..+++.|++.+|.-+|+.+++.+|.++.+|..+|.+....++-..|+..++++++++|++ ..++..||.+|...|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N-leaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN-LEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc-HHHHHHHHHHHhhhh
Confidence 5679999999999999999999999999999999999999999999999999999999999999 778899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------cchHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCC
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQA------NEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~ 283 (1065)
.-..|..++.+-+...|....... +..-... -+...+..-.+.|-.+....| .++.+...||.+|...|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~--a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVS--AGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccc--cCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999999999888775332111 0000000 001124455566667777777 688888888888888888
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHH
Q 001509 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (1065)
|++|+..|+.++.. .|.+...|..||-.+....+..+|+..|.++++ ..|.++.+++++|.+++.+|.|.+|+.
T Consensus 446 fdraiDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 88888888888876 477778888888888888888888888888887 568888888888888888888888888
Q ss_pred HHHHHHHhCCC
Q 001509 364 NFEKVLEIYPD 374 (1065)
Q Consensus 364 ~~~~~l~~~p~ 374 (1065)
+|-.+|.+.+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 88888877554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-15 Score=161.90 Aligned_cols=241 Identities=18% Similarity=0.104 Sum_probs=183.5
Q ss_pred HcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhH
Q 001509 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 131 (1065)
Q Consensus 52 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~ 131 (1065)
..+..+.++..+.+++.... -....+...++.+|.+|...|... .|+..|++++.++|+++.+|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~Al~l~P~~~~a~ 101 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRA-----------LARNDFSQALALRPDMADAY 101 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHcCCCCHHHH
Confidence 34566778888877765321 112356778999999999998876 89999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
+.+|.++...|+++.|+..|+++++++|++..++..+|.+++..|++++|+..|++++..+|+++ . +.....+....+
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~-~~~~~~l~~~~~ 179 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-Y-RALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999983 2 222233455678
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1065)
++++|+..|.+++...+... |. .+.+.+..|+.. .+..+...+....++.|..+.+++.+|.++...|++++|+
T Consensus 180 ~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred CHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999988765533222 21 344444445411 1222223333444667788899999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHH
Q 001509 289 QLTETALAVTNHGPTKSHSYYNLARSY 315 (1065)
Q Consensus 289 ~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1065)
..|++++...+ +...+..+.+....
T Consensus 257 ~~~~~Al~~~~--~~~~e~~~~~~e~~ 281 (296)
T PRK11189 257 ALFKLALANNV--YNFVEHRYALLELA 281 (296)
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHH
Confidence 99999998742 24444444444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-15 Score=157.86 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=230.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+...|..|+..|+.++...|++...|..++..++..|+|+.|....++.+++.|.........+.++...+...+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 46678899999999999999999999999999999999999999999999999998888888888888888777776555
Q ss_pred HHHH------------HhC------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccch
Q 001509 186 KRAL------------QVH------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1065)
Q Consensus 186 ~~al------------~~~------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1065)
+..- .+- |.+ ..+.+..+.|+..+|+++.|...--..+++++.+.++++..|.+++...+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 4211 111 222 34566788999999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1065)
.+.|+..|++++.++|.+..+-... + .+.....+..-|.-.++.|+|..|..+
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~----~---------------------~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS----M---------------------MPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh----h---------------------hHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999766432111 0 133346777889999999999999999
Q ss_pred HHHHHHhcCC-CCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 328 YMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 328 ~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
|..++..-|. ...++..|.+++.+...+|+..+|+..++.++.++|....++...|.|+..+++|++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999985442 233456788999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 001509 407 PR 408 (1065)
Q Consensus 407 p~ 408 (1065)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 66
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=139.59 Aligned_cols=208 Identities=21% Similarity=0.210 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
..+++.+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+ .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 45678888888888888888888888888888888888888888888888 888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcC
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1065)
.++.+|.+++|...|.+++... .-+..+.++.++|.|..+.|+++.|..+|.+++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888888753 3456778999999999999999999999999998 56778888999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 411 (1065)
+|-.|..+++......+-....+.....+-...|+.+.+-.+=.++-...|....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999999888888888888899999999999999998888889998875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-15 Score=155.52 Aligned_cols=204 Identities=24% Similarity=0.229 Sum_probs=173.0
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
.....++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|.+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--------- 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--------- 99 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------
Confidence 34566788888888899999999999998888888888888999999999999999999999998888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
.++.++|.++...|++++|+.+|.+++... ..+
T Consensus 100 ------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----------------------------------------~~~ 132 (234)
T TIGR02521 100 ------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP-----------------------------------------LYP 132 (234)
T ss_pred ------HHHHHHHHHHHHcccHHHHHHHHHHHHhcc-----------------------------------------ccc
Confidence 467788889999999999999998887521 123
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
.....++.+|.++...|++++|...+.+++...|++..++..++.++...|++++|..++++++...|.++..+..++.+
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35567888899999999999999999999999998888899999999999999999999999998888888888888899
Q ss_pred hccccchHHHHHHHHHhhhc
Q 001509 580 ELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 580 ~~~~g~~~~A~~~~~~al~~ 599 (1065)
+...|+++.|..+.+.+...
T Consensus 213 ~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 213 ARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHhhHHHHHHHHHHHHhh
Confidence 98999999998887766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=153.23 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1065)
Q Consensus 83 ~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1065)
...+..+|.+|...|+.. +|+..|.+++..+|.++.++..+|.++...|++++|+..|.+++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 455666666666666544 677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|.+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 777777777777777777777777776643 222 34566667777777777777777777777777766667777777
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777666 677777777766666666666656666666666666655554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-13 Score=134.72 Aligned_cols=239 Identities=21% Similarity=0.260 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----hHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGL 205 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~ 205 (1065)
.-+..|..++-..+.++|+..|-.+++.+|....+.+.+|..+...|..+.|+.+.+..+. .|+.+ ..+...+|.
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999999999999999999887665 55552 345677888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 001509 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1065)
-|...|-++.|...|...+....--..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~--------------- 177 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV--------------- 177 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh---------------
Confidence 89999999999999988876554456667777777777766 777777777776666543211
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
..++.|..++..+....+++.|+..+.++++ .+|..+.+-+.+|.+....|+|..|++.+
T Consensus 178 -----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 178 -----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred -----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHH
Confidence 1123444444444444555555555555544 33444444444555555555555555555
Q ss_pred HHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 366 EKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1065)
Q Consensus 366 ~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 407 (1065)
+.+++.+|.. +.+...|..+|.+.|+.++.+.++.++....+
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5555444443 33444444444444444444444444444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-13 Score=135.88 Aligned_cols=297 Identities=22% Similarity=0.187 Sum_probs=219.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC-----HHHHHHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC-----AMALNYLA 275 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la 275 (1065)
+..|.-+.-..+.++|+..|..+++.+|...++.+.||.++...|+ .+.|+..-+..+. .|+- ..++..||
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE---vDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE---VDRAIRIHQTLLE-SPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch---HHHHHHHHHHHhc-CCCCchHHHHHHHHHHH
Confidence 4456666777788888888888888888888888888888888888 8888887666554 3432 35677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--CchhhhhhHHHHHH
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH--EFIFPYYGLGQVQL 353 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~~~ 353 (1065)
.-|...|-++.|+.+|....... .....+...+..+|....+|++|+..-.+..+..+.+. .....+..+++.+.
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 88888888888888888877543 34457788888889999999999988888776543222 22344566778888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
...+++.|+..+.++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|.... +++..+..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--------------evl~~L~~ 257 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--------------EVLEMLYE 257 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH--------------HHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999998887764 67888888
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
+|...|+.++.+..+.++.+..+ .+.+...++.+..
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~--------------------------------------------g~~~~l~l~~lie 293 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNT--------------------------------------------GADAELMLADLIE 293 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccC--------------------------------------------CccHHHHHHHHHH
Confidence 89999999998888888876321 3344555666666
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA---RNNLQLSIELVNEAL 563 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al 563 (1065)
...-.+.|..++.+-+..+|+.. ..+++...... .|...+.+..++.++
T Consensus 294 ~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 294 LQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 66777888888888888888743 33344333332 223444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-14 Score=155.67 Aligned_cols=259 Identities=25% Similarity=0.272 Sum_probs=205.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 001509 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 335 (1065)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 335 (1065)
..|.-..+...++..|...|+|+.|+.+++.++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456667777789999999999999999999988752 1234445556679999999999999999999999754
Q ss_pred ---CCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
..+|..+.++.+||.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2567778889999999999999999999999999863 33356788899999999999999999999988
Q ss_pred hCCCcHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhh
Q 001509 405 IDPRDAQARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 482 (1065)
Q Consensus 405 ~~p~~~~a~~~l~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1065)
+.-+-+ +.. ..+.++.++|.+|+.+|++.+|..+|++++.......
T Consensus 354 i~~~~~---------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----------------------- 401 (508)
T KOG1840|consen 354 IYLDAP---------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----------------------- 401 (508)
T ss_pred HHHhhc---------cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----------------------
Confidence 643111 111 1247899999999999999999999999997421000
Q ss_pred hhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------CCChHHHHHHHHHHHHHcCCHHHH
Q 001509 483 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLS 555 (1065)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~g~~~~A 555 (1065)
....+.....+.++|..|.+.+.+..|..+|..++.+ +|+....|.+|+.+|..+|+++.|
T Consensus 402 ------------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 402 ------------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred ------------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 0023445678889999999999999999999887753 345567888888889999999888
Q ss_pred HHHHHHHHHH
Q 001509 556 IELVNEALKV 565 (1065)
Q Consensus 556 ~~~~~~al~~ 565 (1065)
+++.+.++..
T Consensus 470 ~~~~~~~~~~ 479 (508)
T KOG1840|consen 470 EELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHH
Confidence 8888887753
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=155.02 Aligned_cols=259 Identities=21% Similarity=0.205 Sum_probs=208.4
Q ss_pred cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh-
Q 001509 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI- 371 (1065)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 371 (1065)
....|....+...++..|...|+|+.|+..+..++..+. ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 445677788888899999999999999999999998531 23344444556999999999999999999999986
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001509 372 -------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 444 (1065)
Q Consensus 372 -------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A 444 (1065)
+|....++.+|+.+|...|++.+|..++++++.+...... .........+.+++.++...+++++|
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~-------~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG-------ASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc-------cChHHHHHHHHHHHHHHHHhcchhHH
Confidence 4455789999999999999999999999999987432100 00001135688999999999999999
Q ss_pred HHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHH
Q 001509 445 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524 (1065)
Q Consensus 445 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 524 (1065)
+.++++++.+.. .. .-..++..+.++.++|.+|..+|++.+|.++
T Consensus 345 ~~l~q~al~i~~--~~---------------------------------~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 345 KKLLQKALKIYL--DA---------------------------------PGEDNVNLAKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred HHHHHHHHHHHH--hh---------------------------------ccccchHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 999999987421 00 0013445788999999999999999999999
Q ss_pred HHHHHHHC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C---CChHHHHHhhhhhccccchHHH
Q 001509 525 YRLILFKY--------QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----G---KYPNALSMLGDLELKNDDWVKA 589 (1065)
Q Consensus 525 ~~~al~~~--------p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~----p---~~~~~~~~l~~~~~~~g~~~~A 589 (1065)
|++++... +.....+..+|..+.+.+++.+|...|..+..+. | +-...+.+|+.+|..+|+++.|
T Consensus 390 ~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 390 YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence 99999753 3335688899999999999999999999887763 3 4446788999999999999999
Q ss_pred HHHHHHhhh
Q 001509 590 KETFRAASD 598 (1065)
Q Consensus 590 ~~~~~~al~ 598 (1065)
+++...++.
T Consensus 470 ~~~~~~~~~ 478 (508)
T KOG1840|consen 470 EELEEKVLN 478 (508)
T ss_pred HHHHHHHHH
Confidence 999998875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.7e-14 Score=149.60 Aligned_cols=202 Identities=14% Similarity=0.039 Sum_probs=178.6
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY--SDSLEFYKRA 188 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~--~~Al~~~~~a 188 (1065)
+|+..+.+++.++|.+..+|..+|.++...| .+++|+.++.+++..+|++..+|..++.++...|.. .+++.++.++
T Consensus 55 rAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 55 RALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 8999999999999999999999999999999 689999999999999999999999999999988874 7889999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH----hHHHHHHHHHHHHHhC
Q 001509 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA----GIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~----~~~~A~~~~~~al~~~ 264 (1065)
+..+|.+ ..+|...|.++..+|++++|+.++.++++.+|.|..+|...+.+....+..+ ..+..+.+..+++..+
T Consensus 135 l~~dpkN-y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 135 LSLDAKN-YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHhCccc-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 9999999 7889999999999999999999999999999999999999998887653211 1357888899999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 001509 265 PYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 317 (1065)
|++..+|+.++.++.. .+...+|...+..++.. .+..+.++..++.+|..
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALSDLLDLLCE 267 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHHHHHHHHHh
Confidence 9999999999999987 34556788888776653 46667788888888775
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-12 Score=146.31 Aligned_cols=328 Identities=15% Similarity=0.142 Sum_probs=204.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
.+.++....++...|++++|+..+......-++....+-.+|.++...|++++|...|...+..+|++ ...+.++..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 45566677777777777777777777777667777777777777777777777777777777777777 55566666665
Q ss_pred HHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 208 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME-KMQRAFEIYPYCAMALNYLANHFFFT 281 (1065)
Q Consensus 208 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1065)
.... ....-...|+......|....+... ..... .|+ .+...+. ++...+.. ..|.+...+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHh-hcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3332 3455566666666666654333211 11111 121 1333332 22333222 2333333333333211
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-CchhhhhhHHHHHHHcCCHHH
Q 001509 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 360 (1065)
... .+...+...|...-.......... .....+| ...++++.+|+.|...|++++
T Consensus 157 ~K~---------------------~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKA---------------------AIIESLVEEYVNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHH---------------------HHHHHHHHHHHHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 111 111111111111000000000000 0000112 235677889999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 001509 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE 440 (1065)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~ 440 (1065)
|+.++++++...|..++.+...|.++...|++.+|...++.+..+++.+-. +-...+..+.+.|+
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy---------------iNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY---------------INSKCAKYLLRAGR 277 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH---------------HHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999988763 45566778889999
Q ss_pred HHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHH
Q 001509 441 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 520 (1065)
Q Consensus 441 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 520 (1065)
+++|...+........ +..... ..-...+.....|.+|.+.|++..
T Consensus 278 ~e~A~~~~~~Ftr~~~-----~~~~~L-----------------------------~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 278 IEEAEKTASLFTREDV-----DPLSNL-----------------------------NDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHhhcCCCC-----CcccCH-----------------------------HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999887765321 000000 011134455667999999999999
Q ss_pred HHHHHHHHHHHCCCh
Q 001509 521 ASVLYRLILFKYQDY 535 (1065)
Q Consensus 521 A~~~~~~al~~~p~~ 535 (1065)
|+..|..+.......
T Consensus 324 ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 324 ALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988765443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-13 Score=150.01 Aligned_cols=317 Identities=17% Similarity=0.120 Sum_probs=233.0
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1065)
+|+.+.++..+|.++...|+.+.|...+.++....|.+ ....+..+.+++..|++++|+..+++++..+|++ ..++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHH
Confidence 79999999999999999999999999999988887754 5567888999999999999999999999999999 4444
Q ss_pred HHHHHHHHHcCCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 201 LGIGLCRYKLGQLG----KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1065)
Q Consensus 201 ~~la~~~~~~g~~~----~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 276 (1065)
.. +..++.+|++. .+...+......+|....++..+|.++...|+ +.+|+..+++++.++|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 43 55555555544 44444444335667777888889999999999 999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhh---hHHHHH
Q 001509 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY---GLGQVQ 352 (1065)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~la~~~ 352 (1065)
+++..|++++|+.++.+++...+..+. ....+..++.++...|++++|+..|.+++...+. .......+ .+...+
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE-SDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC-CChHHHHhhHHHHHHHH
Confidence 999999999999999999987543222 2356778999999999999999999998642211 11111111 222333
Q ss_pred HHcCCHHHHHHH--H-HHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHcCCCCC
Q 001509 353 LKLGDFRSALTN--F-EKVLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DAQARTLLKKAGEEVP 424 (1065)
Q Consensus 353 ~~~g~~~~A~~~--~-~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~~ 424 (1065)
...|....+..+ + .......|. ........+.++...|+.+.|...+..+...... ...... .
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---------~ 306 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR---------D 306 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH---------h
Confidence 334433333222 1 111111121 2233346788888999999999999887664322 111111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
..+....+.+++..|+++.|+..+..++...
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2456778999999999999999999999753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-12 Score=142.55 Aligned_cols=310 Identities=15% Similarity=0.160 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-----RYSDS 181 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-----~~~~A 181 (1065)
.|++++|+.++......-++....+-.+|.+++..|++++|...|...|..+|+|...+.++..+..... ....-
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 5889999999999888888888899999999999999999999999999999999999999998874443 56777
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Q 001509 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR-QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1065)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1065)
..+|.......|.+...-+ +...+..-..|.... .++...+.. .-|..+..+-.+|.....
T Consensus 97 ~~~y~~l~~~yp~s~~~~r--l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K-------------- 158 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRR--LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEK-------------- 158 (517)
T ss_pred HHHHHHHHHhCccccchhH--hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhH--------------
Confidence 8999999999998833222 222222222343333 333333332 234444444444432221
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 001509 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1065)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1065)
..+...+..-|...-.......... .....+|. ...+++.++..|...|++++|+.++++++. ..|
T Consensus 159 -------~~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htP 225 (517)
T PF12569_consen 159 -------AAIIESLVEEYVNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTP 225 (517)
T ss_pred -------HHHHHHHHHHHHHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCC
Confidence 1111111111111000000000000 00001121 245678899999999999999999999998 568
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
..+..++..|.++-..|++.+|...++.+-.+++.+..+....+..+++.|+.++|...+....+.+.+...-..-++
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ-- 303 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ-- 303 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH--
Confidence 889999999999999999999999999999999999999999999999999999999998877654421110000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
..-.....|.+|.+.|++..|+..|.....
T Consensus 304 ----c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 ----CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred ----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 001234568899999999999999988776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-13 Score=148.60 Aligned_cols=309 Identities=15% Similarity=0.073 Sum_probs=226.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1065)
+.+..+..++.+|...|... .|...+.++....|.+ ....+..|.++...|++++|...+++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667888998888888765 5566777766666644 456788899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1065)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1065)
+|.+..++.. +..++..|.+..+...+.+++ ..+|.. ...+..+|.++...|+++.|...+++++.++|++..+
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH
Confidence 9999987775 666666655554444444444 344544 4556678999999999999999999999999999999
Q ss_pred HHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH-H
Q 001509 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-Y 308 (1065)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~ 308 (1065)
+..+|.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+..++.++...+..+..... -
T Consensus 151 ~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (355)
T cd05804 151 VHAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLD 227 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhh
Confidence 9999999999999 9999999999999887543 345689999999999999999999987543221111111 1
Q ss_pred H-HHHHHHHHcCCHHHHHHH--HH-HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---------c
Q 001509 309 Y-NLARSYHSKGDYEKAGLY--YM-ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------N 375 (1065)
Q Consensus 309 ~-~la~~~~~~g~~~~A~~~--~~-~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~ 375 (1065)
. .+...+...|....+..+ .. ......+. +.........+.++...|+...|...+..+...... .
T Consensus 228 ~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 306 (355)
T cd05804 228 AASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARD 306 (355)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHh
Confidence 1 223333444543333332 11 11111111 222233346788889999999999999887664322 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
..+....+.++...|+++.|+..+..++...
T Consensus 307 ~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 307 VGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567778999999999999999999998753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-13 Score=143.82 Aligned_cols=223 Identities=14% Similarity=0.008 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKR 187 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~ 187 (1065)
.|.+|..+|..++. ..+.+++|+..+.+++.++|.+..+|..++.++...| .+.+++.++.+
T Consensus 35 ~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 35 EFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 45566666665544 3567889999999999999999999999999999998 68999999999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQL--GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
++..+|++ ..+|...+.++..+|.. ..++.++.+++..+|.|..+|...+.++...|. +++++..+.++++.+|
T Consensus 98 ~i~~npkn-yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 98 VAEDNPKN-YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHCCcc-hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCC
Confidence 99999999 67799999999999874 788999999999999999999999999999988 9999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 001509 266 YCAMALNYLANHFFFTGQ---HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1065)
.+..+|+..+.++...+. +. ...+.++.+..+++. ..|.+.
T Consensus 174 ~N~sAW~~R~~vl~~~~~l~~~~---------------------------------~~~e~el~y~~~aI~---~~P~N~ 217 (320)
T PLN02789 174 RNNSAWNQRYFVITRSPLLGGLE---------------------------------AMRDSELKYTIDAIL---ANPRNE 217 (320)
T ss_pred CchhHHHHHHHHHHhcccccccc---------------------------------ccHHHHHHHHHHHHH---hCCCCc
Confidence 999999998887665421 11 012234444444444 234444
Q ss_pred hhhhhHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1065)
Q Consensus 343 ~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1065)
.+|+.++.++.. .+...+|+..+..++...|.++.++-.|+.+|..
T Consensus 218 SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 218 SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 445555555444 2344455555555555555555566666665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-09 Score=129.58 Aligned_cols=249 Identities=13% Similarity=0.108 Sum_probs=162.2
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----
Q 001509 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (1065)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---- 196 (1065)
...+|.+..+|..++..+...|++++|+..+...+...|+...+++.+|.++++.+++.++..+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4567889999999999999999999999999999999999999999999999999998887766 6666655551
Q ss_pred --------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 197 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
..+++.+|.||-++|+.++|...|+++++.+|+++.++..+|..+... + +++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 145666777777777777777777777777777777777777666666 5 6777777766665
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 001509 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1065)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1065)
. |+..++|..+..++.+.+... |.+...+..+- +++..... ....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~i~----------------~ki~~~~~-~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLRIE----------------RKVLGHRE-FTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHHHH----------------HHHHhhhc-cchhH
Confidence 4 334445555555555554432 22222211111 11111000 01111
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL--------------------GQIEKAQELLRKA 402 (1065)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------g~~~~A~~~~~~a 402 (1065)
..+.-+=.+|...++|++++.++..+++.+|.|..+...++.+|... ..+..|+..|++.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 22333345566667777777777777777777777777777776633 2345566666666
Q ss_pred HHhCCCc
Q 001509 403 AKIDPRD 409 (1065)
Q Consensus 403 l~~~p~~ 409 (1065)
+...+.+
T Consensus 304 i~f~~G~ 310 (906)
T PRK14720 304 IVFDTGN 310 (906)
T ss_pred eeecCCC
Confidence 6555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=138.17 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=132.2
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch--
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1065)
.++..+..++.+|..++..|+++.|+..|++++..+|.++ .+++.+|.+++..|++++|+..|+++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778999999999999999999999999999999875 57899999999999999999999999999998743
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 198 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
.+++.+|.++... |+++.|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 2678888888876 667777777777777777765544333222111100 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
......+|.+++..|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 011234455555555555555555555555544445555555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1065)
.++...|++++|+.+++.+...+|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666665555554443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-11 Score=121.89 Aligned_cols=377 Identities=14% Similarity=0.115 Sum_probs=238.9
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001509 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1065)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1065)
.+..+|.+|++++..-.. ..|.....+..+|.||+...+|..|..+|+++-...|......+..++.+++.+.+..|
T Consensus 21 I~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 445556666666555544 33444445555666666666666666666666666666666556666666666666666
Q ss_pred HHHHHHHHHh-----------------CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchh
Q 001509 396 QELLRKAAKI-----------------DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 458 (1065)
Q Consensus 396 ~~~~~~al~~-----------------~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 458 (1065)
+.+...+... ..+.+.++.++........+.+.++.|++.++.|+++.|++-|+.+++.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---- 173 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---- 173 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh----
Confidence 5554433221 1111224444444444555678999999999999999999999999973
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHH----HCCC
Q 001509 459 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF----KYQD 534 (1065)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~ 534 (1065)
....+.+.++++.+..+.|++..|+++...+++ .+|.
T Consensus 174 ---------------------------------------sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 174 ---------------------------------------SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred ---------------------------------------cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 334667889999999999999999998888775 3442
Q ss_pred h-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHhhhhhccccchH
Q 001509 535 Y-------------------------VDAYLRLAAIAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 535 ~-------------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~ 587 (1065)
. ..+++..+.++++.++++.|.+.+..+--... -+|..+.+++..- ..+++.
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~ 293 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPT 293 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcc
Confidence 1 33667777888899999888877665432221 2455666666552 335566
Q ss_pred HHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc------chHHHhHHHHH
Q 001509 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAANGAGVV 661 (1065)
Q Consensus 588 ~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~~~la~~ 661 (1065)
....-+.-.+...|- ...++.++--+ |++. ..|+-|..++ ..+|+ +.+.+..+-.+
T Consensus 294 ~g~~KLqFLL~~nPf-P~ETFANlLll-yCKN------------eyf~lAADvL----AEn~~lTyk~L~~Yly~LLdaL 355 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPF-PPETFANLLLL-YCKN------------EYFDLAADVL----AENAHLTYKFLTPYLYDLLDAL 355 (459)
T ss_pred ccHHHHHHHHhcCCC-ChHHHHHHHHH-Hhhh------------HHHhHHHHHH----hhCcchhHHHhhHHHHHHHHHH
Confidence 666666667776553 33444455555 7776 6666666554 44554 23333333333
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHH-HHHHHHc-----CCHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 001509 662 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL-AHVYFAQ-----GNFALAMKMYQNCLRKFYYNTDAQILLYLAR 735 (1065)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~l-g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~ 735 (1065)
....-..++|..-+........ .-+..+ +.+.... .-...|++.|..+++.+ ..++...++
T Consensus 356 It~qT~pEea~KKL~~La~~l~--------~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~Ak 422 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLAGMLT--------EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-----LPVLMAQAK 422 (459)
T ss_pred HhCCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 3344566666666555443221 111111 1222111 12345677777777764 357788899
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 736 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 736 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
+|+...++..+.+.|++......++...+.|+|-+
T Consensus 423 iyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLNvaHv 457 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVEFCNDHDVWKLNVAHV 457 (459)
T ss_pred hhccccccHHHHHHHHHHHhhhcccceeeeccccc
Confidence 99999999999999999999998888888888754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=122.72 Aligned_cols=423 Identities=12% Similarity=0.092 Sum_probs=268.4
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
++.+|..|++++..-.+.+|.+...+..+|.+|+...+|..|..+|++.-...|......+..|..+++.+.+..|+.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 35677899999999999999888899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
..+... |.....+.-.-+.+.+..+++..+....++.- ..+........|.+.++.|+ ++.|++.|+.+++...
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhcC
Confidence 776543 33333444556667778888888877766521 12456778888888888888 9999999999999988
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001509 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT-NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1065)
.+|.+-+.++.++++.|++..|+++...++... ...|........-|.--...|+. +..-.. ..+.+
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~S---------al~eA 243 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQS---------ALVEA 243 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHH---------HHHHH
Confidence 888888899999999999999988888777542 11121100000000000001111 011111 11234
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCC
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 422 (1065)
+...+.++++.|+++.|.+.+..+-... .-+|.++++++..-. .+++.....-+.-.+.++|-.+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~------------ 310 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPP------------ 310 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCCh------------
Confidence 5556777888888888876654432111 113566777665433 3456666666666677777433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchh
Q 001509 423 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 502 (1065)
Q Consensus 423 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 502 (1065)
+++-|+-.+|++..-|+.|...+-+--... ..-..
T Consensus 311 ---ETFANlLllyCKNeyf~lAADvLAEn~~lT------------------------------------------yk~L~ 345 (459)
T KOG4340|consen 311 ---ETFANLLLLYCKNEYFDLAADVLAENAHLT------------------------------------------YKFLT 345 (459)
T ss_pred ---HHHHHHHHHHhhhHHHhHHHHHHhhCcchh------------------------------------------HHHhh
Confidence 677888888888877777776654321100 00011
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCChHHHHHhhh
Q 001509 503 TVLFNLARLLE-QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 503 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
..++++-..+. ..-..++|.+-+...-....+-......-...-...+ ....|++.|+..+++ ...+....++
T Consensus 346 ~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~Ak 422 (459)
T KOG4340|consen 346 PYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAK 422 (459)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 22333333322 2234455544443332211111000000011111111 122345555555554 3457778899
Q ss_pred hhccccchHHHHHHHHHhhhcCCCCChHH
Q 001509 579 LELKNDDWVKAKETFRAASDATDGKDSYA 607 (1065)
Q Consensus 579 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~ 607 (1065)
+|+...+|..+.+.|.........++.+-
T Consensus 423 iyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred hhccccccHHHHHHHHHHHhhhcccceee
Confidence 99999999999999999988777766653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=135.80 Aligned_cols=194 Identities=22% Similarity=0.324 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 001509 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 232 (1065)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 232 (1065)
++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445688999999999999999999999999999999873 256899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHcc-----chHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHH
Q 001509 233 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1065)
Q Consensus 233 a~~~la~~~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1065)
+++.+|.++.... +.+.+..|+..+.+++..+|.+..++..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a---------------------------------- 154 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA---------------------------------- 154 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH----------------------------------
Confidence 6888888887651 1123888888888888888877644321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1065)
+..++..... . ....+.+|.+++..|++.+|+..|..++...|+. +.+++.+|.
T Consensus 155 ~~~~~~~~~~--------------~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 155 KKRMDYLRNR--------------L---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHH--------------H---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 1112111110 0 0123568889999999999999999999997764 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 385 IYVQLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 385 ~~~~~g~~~~A~~~~~~al~~~p~ 408 (1065)
++...|++++|..+++.+....|+
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999988776653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=126.91 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=118.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
-..+|++++.++|++ ++.+|.++...|++++|+..|..++..+|.+..++..+|.++...|++.+|+..|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356789999999874 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
|++ +.+++.+|.|+..+|++++|+..|.+++...|+++..+..++.+....
T Consensus 89 p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999998888766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-10 Score=117.95 Aligned_cols=296 Identities=19% Similarity=0.109 Sum_probs=214.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
.-|..-+..|+|.+|.....+.-+..+....+++.-|.+.-.+|+++.|-.++.++.+..++..-.+.+..+.+....|+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34566667788888888888877777777777777777888888888888888888877666655667777888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHH---H--HHHHHcCCHHHH
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL---A--NHFFFTGQHFLV 287 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a--~~~~~~g~~~~A 287 (1065)
+..|.....+++...|.++.++.....+|...|+ +......+.++-+..--+..-...+ + .++-..++-..+
T Consensus 169 ~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888888888888888888888888888877 7777666666655432222111111 1 011112222222
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHH
Q 001509 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1065)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1065)
..+....-..+..-..++.....++.-+..+|+.++|......+++..-+ +. ...-.-....+++..=++..++
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~-----L~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR-----LCRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh-----HHHHHhhcCCCCchHHHHHHHH
Confidence 22222211222222344677788888899999999999999999974321 11 1112233567889999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 447 (1065)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 447 (1065)
.+..+|+++..+..||.++++.+.|.+|..+|+.+++..|+.. .+..+|.++...|+...|.+.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~----------------~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS----------------DYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh----------------hHHHHHHHHHHcCChHHHHHH
Confidence 9999999999999999999999999999999999999988765 478889999999999999999
Q ss_pred HHHHHc
Q 001509 448 FKDALG 453 (1065)
Q Consensus 448 ~~~al~ 453 (1065)
+++++.
T Consensus 384 r~e~L~ 389 (400)
T COG3071 384 RREALL 389 (400)
T ss_pred HHHHHH
Confidence 999984
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-10 Score=116.89 Aligned_cols=297 Identities=13% Similarity=0.054 Sum_probs=197.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHH
Q 001509 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427 (1065)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 427 (1065)
-|..-+..|+|..|.....+.-+..+...-.+..-+...-+.|+++.|-.++.++.+..+++.. .+
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l--------------~v 155 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL--------------AV 155 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH--------------HH
Confidence 3444455667777777776666555554455555556666667777777777776666544443 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHH
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 507 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 507 (1065)
....+.+....|++..|.....+++. ..|..+.++..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~-------------------------------------------~~pr~~~vlrL 192 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLE-------------------------------------------MTPRHPEVLRL 192 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHH-------------------------------------------hCcCChHHHHH
Confidence 44556666677777777777666665 44556666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCh---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 508 LARLLEQIHDTVAASVLYRLILFKYQDY---V-----DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 508 la~~~~~~g~~~~A~~~~~~al~~~p~~---~-----~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
..++|...|++.....++.++-+..--. . .++..+-.-....+..+.-..+++..-..-.+++.+...++.-
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~ 272 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER 272 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence 6677777777776666666655422211 1 1222221112222222223335555444445677888888888
Q ss_pred hccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHH
Q 001509 580 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 659 (1065)
Q Consensus 580 ~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 659 (1065)
+...|+.+.|.+....+++..-.+....+ ++ .... ++...=++..++.+..+|+++..+..||
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~--~~---~l~~------------~d~~~l~k~~e~~l~~h~~~p~L~~tLG 335 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLCRL--IP---RLRP------------GDPEPLIKAAEKWLKQHPEDPLLLSTLG 335 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHHHH--Hh---hcCC------------CCchHHHHHHHHHHHhCCCChhHHHHHH
Confidence 88899999999999888875543231111 11 1111 6777778888889999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC
Q 001509 660 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724 (1065)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 724 (1065)
.++.+.+.|.+|...|+.++...| +...+..+|+++-.+|+...|-..++.++..+..+
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 336 RLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999988875 56788899999999999999999999998765443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=129.67 Aligned_cols=274 Identities=19% Similarity=0.192 Sum_probs=187.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCC
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
|.-+++.|++...+.+|+.+++....+ ..+|..||..|+-+++|++|+++-..=+.+. .++ ......
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla-------r~l--gdklGE 94 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA-------RLL--GDKLGE 94 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH-------HHh--cchhcc
Confidence 556778888888888888888876554 3466778888888888888887754332221 001 001111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 504 (1065)
+...-|+|..+-..|.|++|+.+..+-+....... .......+
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg-------------------------------------Drv~e~RA 137 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG-------------------------------------DRVLESRA 137 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHh-------------------------------------HHHhhhHH
Confidence 24567889999999999999999888776321110 11225678
Q ss_pred HHHHHHHHHHcCC--------------------hHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHcCCHHHHHHH
Q 001509 505 LFNLARLLEQIHD--------------------TVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIEL 558 (1065)
Q Consensus 505 ~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~ 558 (1065)
+|++|.+|...|+ ++.|.++|..-++..... ..++-+||..|+-.|+|+.|+..
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~ 217 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF 217 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence 9999999987764 234555555555433322 34778889999999999999998
Q ss_pred HHHHHHHCCCC------hHHHHHhhhhhccccchHHHHHHHHHhhhcC-----CCCChHHHHhhHHHHHHHHHhhhhcCh
Q 001509 559 VNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDAT-----DGKDSYATLSLGNWNYFAALRNEKRAP 627 (1065)
Q Consensus 559 ~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~d~~~~~~lg~~~y~~~~~~~~~~~ 627 (1065)
-+.-+.+.... ..++.++|++|.-.|+++.|+++|+..+.+. ......+.++||+. |...
T Consensus 218 H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt-ytll-------- 288 (639)
T KOG1130|consen 218 HKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT-YTLL-------- 288 (639)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH-HHHH--------
Confidence 88777765332 3588899999999999999999999877632 22345577889999 8888
Q ss_pred hHHhhhHHHHHHHHHHHHhhCC------cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001509 628 KLEATHLEKAKELYTRVIVQHT------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 681 (1065)
Q Consensus 628 ~~~~~~~~~A~~~~~~~l~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 681 (1065)
+.+++|+.++.+-|.+.. ....+.+.||..+...|..++|+.+.++.+++
T Consensus 289 ----~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 289 ----KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 899999999988766422 12334555555555555555555555555444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-08 Score=112.84 Aligned_cols=611 Identities=15% Similarity=0.102 Sum_probs=306.3
Q ss_pred HHHHHHHHhcCCChHHHHHHH--HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhh
Q 001509 27 SDILDILKAEQAPLDLWLIIA--REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQR 104 (1065)
Q Consensus 27 ~~~~~~L~~e~~~~~~~~~~a--~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~ 104 (1065)
.-+.+++-.+.++....-.+- ..|.-.|+.|.|.+-++-+-+. .+|..||.......+++..+
T Consensus 713 ~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--------------~vW~nmA~McVkT~RLDVAk- 777 (1416)
T KOG3617|consen 713 KPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--------------SVWDNMASMCVKTRRLDVAK- 777 (1416)
T ss_pred hhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--------------HHHHHHHHHhhhhccccHHH-
Confidence 456777777777766553222 2456689999988777664222 35666666665554444111
Q ss_pred hhHHHHHH--HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001509 105 EKEEHFIL--ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (1065)
Q Consensus 105 ~k~~~~~~--A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al 182 (1065)
---|+... ....+.++.+ +|. ..-...+.+....|.+++|..+|.+.-+.+ .+-..|...|.+++|+
T Consensus 778 VClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~ 846 (1416)
T KOG3617|consen 778 VCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAF 846 (1416)
T ss_pred HhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHH
Confidence 01122222 2333445543 333 333455777888999999999999986644 4556788899999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
++.+.--++.- ...++..+.-+...++.+.|+++|+++-. |. .+.. .++ .+ +..+++.|-+
T Consensus 847 eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~--ha-fev~----rmL---~e---~p~~~e~Yv~--- 907 (1416)
T KOG3617|consen 847 EIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGV--HA-FEVF----RML---KE---YPKQIEQYVR--- 907 (1416)
T ss_pred HHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCC--hH-HHHH----HHH---Hh---ChHHHHHHHH---
Confidence 87765443333 34688889999999999999999987521 10 0000 000 00 1222222211
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 001509 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1065)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1065)
...++..|...|.++-..|+.+.|+.+|..+. -|+.+.++..-+|+.++|-.+-++.. ..
T Consensus 908 -~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----------D~fs~VrI~C~qGk~~kAa~iA~esg--------d~ 967 (1416)
T KOG3617|consen 908 -RKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----------DYFSMVRIKCIQGKTDKAARIAEESG--------DK 967 (1416)
T ss_pred -hccchHHHHHHHHHHhcccchHHHHHHHHHhh-----------hhhhheeeEeeccCchHHHHHHHhcc--------cH
Confidence 11233455555555555555555555555442 23333444444444444433322211 11
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHHhC------CC--------------cHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 001509 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PD--------------NCETLKALGHIYVQLG-QIEKAQELLRK 401 (1065)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------p~--------------~~~~~~~la~~~~~~g-~~~~A~~~~~~ 401 (1065)
.+.|.+|..|...|++.+|+.+|.++-... .. .+.-+...+..|...| ....|..+|.+
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 233344444444444444444443332210 00 0111122233333343 45555555443
Q ss_pred H------HH--hCCCcHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhh
Q 001509 402 A------AK--IDPRDAQARTLLKK-AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 472 (1065)
Q Consensus 402 a------l~--~~p~~~~a~~~l~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 472 (1065)
+ ++ .....+.+..++.+ ......|.++..-+.++....+|++|..++-.+...........+..-.
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~----- 1122 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVR----- 1122 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----
Confidence 3 11 12223334444443 3445567899999999999999999998765554321100000000000
Q ss_pred hhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCH
Q 001509 473 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 552 (1065)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 552 (1065)
-..++-+.+.......-.......++..+|.++.++|.|..|-+-|.++=. .+.....+++.|+.
T Consensus 1123 -------vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd--------Kl~AMraLLKSGdt 1187 (1416)
T KOG3617|consen 1123 -------VTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD--------KLSAMRALLKSGDT 1187 (1416)
T ss_pred -------hhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh--------HHHHHHHHHhcCCc
Confidence 001111111110001111223567888999999999999998888776521 11222334555554
Q ss_pred HHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhh---cChhH
Q 001509 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK---RAPKL 629 (1065)
Q Consensus 553 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~---~~~~~ 629 (1065)
++-+-+.+ -....++|. ++.-|++.-+|..--+.++.++..+.+ ..++-.||+. |-..+..+- .+...
T Consensus 1188 ~KI~FFAn-----~sRqkEiYI-mAANyLQtlDWq~~pq~mK~I~tFYTK--gqafd~LanF-Y~~cAqiEiee~q~ydK 1258 (1416)
T KOG3617|consen 1188 QKIRFFAN-----TSRQKEIYI-MAANYLQTLDWQDNPQTMKDIETFYTK--GQAFDHLANF-YKSCAQIEIEELQTYDK 1258 (1416)
T ss_pred ceEEEEee-----ccccceeee-ehhhhhhhcccccChHHHhhhHhhhhc--chhHHHHHHH-HHHHHHhhHHHHhhhhH
Confidence 43211100 011223333 333445555665555555555544433 2244456776 655543322 11222
Q ss_pred HhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHH
Q 001509 630 EATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709 (1065)
Q Consensus 630 ~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 709 (1065)
..|-.++|..++.++-+.+ .+...+....+.. ....+.+..-.++. .+...
T Consensus 1259 a~gAl~eA~kCl~ka~~k~---------------------~~~t~l~~Lq~~~------a~vk~~l~~~q~~~--eD~~~ 1309 (1416)
T KOG3617|consen 1259 AMGALEEAAKCLLKAEQKN---------------------MSTTGLDALQEDL------AKVKVQLRKLQIMK--EDAAD 1309 (1416)
T ss_pred HhHHHHHHHHHHHHHHhhc---------------------chHHHHHHHHHHH------HHHHHHHHHHHHhh--hhHHH
Confidence 2344444444444443322 1111111111111 00111111112222 24555
Q ss_pred HHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCc
Q 001509 710 AMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 761 (1065)
Q Consensus 710 A~~~~~~al~~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~ 761 (1065)
.+......+.. |.-++ ..++-.|...+....+|..|...+..+-...|+-.
T Consensus 1310 ~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1310 GIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 66666666654 22222 67788888899999999999999999988888643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=119.51 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=116.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
..+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46789999999875 6678999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
|+++.+++.+|.++...|+ +++|+..|.+++.+.|+++..+..++.+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999998887776543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-09 Score=136.67 Aligned_cols=382 Identities=15% Similarity=0.079 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1065)
......|..+...|.+.+|+..+..+... ..-..++...++.....|... .+..++..+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~----------~~~~~ll~~~a~~l~~~g~~~-----------~l~~~l~~l 400 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA----------QLLRDILLQHGWSLFNQGELS-----------LLEECLNAL 400 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH----------HHHHHHHHHhHHHHHhcCChH-----------HHHHHHHhC
Confidence 34456677788899999888887776322 122345556677777666544 444444433
Q ss_pred h-hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001509 121 S-RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 121 ~-~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1065)
- .....++.....++.+++..|++++|...+..+....+. ...+...++.++...|++.+|...+++++.
T Consensus 401 p~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 480 (903)
T PRK04841 401 PWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA 480 (903)
T ss_pred CHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1 111234556677888999999999999999988764321 123455678888999999999999999998
Q ss_pred hCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccchHhHHHHHHHHHHH
Q 001509 191 VHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1065)
Q Consensus 191 ~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1065)
..|... ..+...+|.++...|+++.|...+.+++...... ..++..++.++...|+ +..|...+.++
T Consensus 481 ~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~---~~~A~~~~~~a 557 (903)
T PRK04841 481 ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF---LQAAYETQEKA 557 (903)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 655542 2345678899999999999999999998764321 2346678889999999 99999999988
Q ss_pred HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 261 FEIYPY--------CAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1065)
Q Consensus 261 l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1065)
+..... ...++..++.+++..|++++|...+..++..... .......+..++.++...|+++.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 875221 2334567888999999999999999998875332 122355677789999999999999999999
Q ss_pred HHHhcCCCCCchhhhh----hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 331 SVKEINKPHEFIFPYY----GLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 331 al~~~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
+............... .....+...|+.+.|...+.......+... ..+..++.++...|++++|...+.++
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8764322211111111 122445568899999998877654322222 22567899999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 403 AKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 403 l~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
+.......... ....++..+|.++...|+.++|...+.+++...
T Consensus 718 l~~~~~~g~~~---------~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 718 NENARSLRLMS---------DLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHhCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 87632211100 012567788999999999999999999999853
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-09 Score=137.62 Aligned_cols=389 Identities=14% Similarity=0.023 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhH
Q 001509 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1065)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1065)
..+...+..+...|++..+...+..+-. .+.........+..+...|++..+..++..+-... ...........
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d----~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~--~~~~~~l~~~~ 415 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGD----AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV--LLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCC----HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH--HhcCcchHHHH
Confidence 4455667778888998887765544311 12223445556777788888887777665432110 11222334567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPD---------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
+.++...|++++|...+..+....+. ...+...++.++...|+++.|..++++++...+.......
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 490 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR----- 490 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH-----
Confidence 88888999999999999988764321 1345556788899999999999999999986554321111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
...+..+|.++...|+++.|...+.+++....... ...
T Consensus 491 -----~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-------------------------------------~~~ 528 (903)
T PRK04841 491 -----IVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-------------------------------------VYH 528 (903)
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------------------------------chH
Confidence 13567789999999999999999999986321000 111
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--- 568 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 568 (1065)
....++.++|.++...|+++.|...+.+++.... .....+..++.++...|++++|...+.+++.....
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 1345678899999999999999999999887422 12334567888999999999999999999876432
Q ss_pred --ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCC-hHHH-Hh---hHHHHHHHHHhhhhcChhHHhhhHHHHHHHH
Q 001509 569 --YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD-SYAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELY 641 (1065)
Q Consensus 569 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d-~~~~-~~---lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 641 (1065)
....+..++.++...|++..|...+..+........ ...+ .. +....+... |..+.|...+
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l 676 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWL 676 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHH
Confidence 244566788999999999999999999876432211 1100 00 111102222 6777777776
Q ss_pred HHHHhhCCcchH----HHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 642 TRVIVQHTSNLY----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQN 716 (1065)
Q Consensus 642 ~~~l~~~p~~~~----a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 716 (1065)
.......+.... .+..++.++...|++++|...+++++........ .....++..+|.++...|++++|...+.+
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 677 RQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665543222221 1346677777778888888888777765432211 12334666777777777888888888887
Q ss_pred HHHHhc
Q 001509 717 CLRKFY 722 (1065)
Q Consensus 717 al~~~~ 722 (1065)
++..+.
T Consensus 757 Al~la~ 762 (903)
T PRK04841 757 ALKLAN 762 (903)
T ss_pred HHHHhC
Confidence 777653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-11 Score=121.13 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEFY 185 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~~ 185 (1065)
...+++..+.+++..+|+++..|+.+|.++...|+++.|+..|.+++...|+++.++..+|.++ +..|+ +.+|..++
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3458899999999999999999999999999999999999999999999999999999999975 67777 59999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
+++++.+|++ ..+++.+|.+++..|++++|+.+|+++++..|.+..
T Consensus 134 ~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 134 DKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999999999 778999999999999999999999999999887654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=127.93 Aligned_cols=304 Identities=19% Similarity=0.194 Sum_probs=192.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1065)
-|.-+++.|++...+.+|+.+++...++.. .|.. ++..||+.|+..+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~---tLSA------------------------------IYsQLGNAyfyL~ 69 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLS---TLSA------------------------------IYSQLGNAYFYLK 69 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHH---HHHH------------------------------HHHHhcchhhhHh
Confidence 355566677777777777777766554332 1222 2333444555555
Q ss_pred CHHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cCCCCCchhhhhhHHHHHHHcC
Q 001509 283 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE---INKPHEFIFPYYGLGQVQLKLG 356 (1065)
Q Consensus 283 ~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g 356 (1065)
+|.+|+++...-+.. ..+....+.+.-++|..+--.|.|++|+.+..+-+.. +++.-....++|++|.+|...|
T Consensus 70 DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 70 DYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 555555544332211 1112233445566777777777777777776665432 2222233456777777777665
Q ss_pred C--------------------HHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 357 D--------------------FRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 357 ~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+ +..|+++|..-+++... ...++-+||..|+-+|+|+.|+..-+.-+.+.....
T Consensus 150 k~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG 229 (639)
T KOG1130|consen 150 KCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG 229 (639)
T ss_pred cccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh
Confidence 3 34555666555554322 134677888899999999999998887776543332
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhccc
Q 001509 411 QARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 490 (1065)
Q Consensus 411 ~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (1065)
+-... -..+.|+|.+|+-.|+++.|+++|+..+.+.....
T Consensus 230 DrAae---------RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg------------------------------- 269 (639)
T KOG1130|consen 230 DRAAE---------RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG------------------------------- 269 (639)
T ss_pred hHHHH---------HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-------------------------------
Confidence 21000 15788999999999999999999999886432111
Q ss_pred CCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 491 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ------DYVDAYLRLAAIAKARNNLQLSIELVNEALK 564 (1065)
Q Consensus 491 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 564 (1065)
.....+...|.+|..|.-...+.+|+.++.+-+.+.. ....++..||..+...|....|+.+....++
T Consensus 270 ------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 270 ------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred ------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2233677889999999999999999999988776433 2356888899999999999999888887766
Q ss_pred HC-----CC-ChHHHHHhhhhhccccc
Q 001509 565 VN-----GK-YPNALSMLGDLELKNDD 585 (1065)
Q Consensus 565 ~~-----p~-~~~~~~~l~~~~~~~g~ 585 (1065)
+. +. ...+..++..+....|.
T Consensus 344 ~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 344 SSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 53 11 22344555555444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=141.28 Aligned_cols=225 Identities=13% Similarity=0.077 Sum_probs=177.8
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
.+|.+..++..++..+...+++++|+.++...+..+|+....|+.+|.++...+++..+..+ .++.+.+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 78889999999999999999999999999999999999999999999999999987666555 4444433
Q ss_pred hhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHh
Q 001509 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 656 (1065)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 656 (1065)
...+| .+.+++...+...+. ..+++..+|.+ |-.. |..++|...|+++|+.+|+|+.+++
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 33344 334444433333333 55689999999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc----------
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---------- 726 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 726 (1065)
++|..|... ++++|+.++.+++... ...++|..+..++.+.+...+..-+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998764 3344555555555555544222222
Q ss_pred --------HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhh
Q 001509 727 --------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772 (1065)
Q Consensus 727 --------~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~ 772 (1065)
..++.-+=..|...++|++++.+|+.++..+|+|..+++.++.|+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344444477788899999999999999999999999999999865
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-10 Score=110.03 Aligned_cols=211 Identities=16% Similarity=0.065 Sum_probs=172.9
Q ss_pred HcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhH
Q 001509 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTW 131 (1065)
Q Consensus 52 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~ 131 (1065)
...+.++-+++...++......-+ .++.-.++-.+..+.+-.|+.. .|..++++.....|++....
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~---g~e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV~ 89 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGAL---GDEIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRVG 89 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhccc---CchHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhHH
Confidence 344566666666555322110000 1122334444444444445444 89999999888889999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
...|..+-..|++++|+++|+..+..+|.|..++-..-.+...+|+-.+|++.+...+...+.+ ..+|..++.+|...|
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999888889999999999999999999999999 788999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 277 (1065)
+|++|.-+++.++-+.|.++-.+..+|.+++..|-..++.-+..+|.++++++|.+..+++.+..+
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 999999999999999999999999999999998888889999999999999999888777665433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-07 Score=104.23 Aligned_cols=346 Identities=17% Similarity=0.180 Sum_probs=201.5
Q ss_pred HHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHH
Q 001509 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1065)
Q Consensus 238 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 317 (1065)
+.+....|- +++|..+|.+.-.. -.|-.+|...|.+++|.++.+.--. -..-..|++.+..+..
T Consensus 807 AvLAieLgM---lEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR-----iHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 807 AVLAIELGM---LEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR-----IHLRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc-----eehhhhHHHHHHHHHh
Confidence 344444555 77788777776543 2455667778888888777664321 1334678888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001509 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1065)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1065)
.++.+.|+.+|+++-. +. + .+...+.++..+++.|-+-. .+...|...|..+...|+.+.|+.
T Consensus 871 r~Di~~AleyyEK~~~-----ha-----f---ev~rmL~e~p~~~e~Yv~~~----~d~~L~~WWgqYlES~GemdaAl~ 933 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV-----HA-----F---EVFRMLKEYPKQIEQYVRRK----RDESLYSWWGQYLESVGEMDAALS 933 (1416)
T ss_pred hccHHHHHHHHHhcCC-----hH-----H---HHHHHHHhChHHHHHHHHhc----cchHHHHHHHHHHhcccchHHHHH
Confidence 8999999999987642 11 1 11222334455555543322 245777778888888899999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHH
Q 001509 398 LLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 477 (1065)
Q Consensus 398 ~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1065)
+|..+-. |+.+..+.+-+|+.++|-.+-++.
T Consensus 934 ~Y~~A~D-----------------------~fs~VrI~C~qGk~~kAa~iA~es-------------------------- 964 (1416)
T KOG3617|consen 934 FYSSAKD-----------------------YFSMVRIKCIQGKTDKAARIAEES-------------------------- 964 (1416)
T ss_pred HHHHhhh-----------------------hhhheeeEeeccCchHHHHHHHhc--------------------------
Confidence 8887643 556667777788888887766543
Q ss_pred HhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH------CCChHHHHHHHHHHHHHcC-
Q 001509 478 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARN- 550 (1065)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g- 550 (1065)
.+..+.|.+|+.|...|++.+|+.+|.++-.. ...+ +..-.|+.+....|
T Consensus 965 ----------------------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn-d~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 965 ----------------------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN-DMKDRLANLALMSGG 1021 (1416)
T ss_pred ----------------------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHhhcCc
Confidence 25567888999999999999999888876432 1111 01112222222222
Q ss_pred -CHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHh----------hhcCCCCChHHHHhhHHHHHHHH
Q 001509 551 -NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----------SDATDGKDSYATLSLGNWNYFAA 619 (1065)
Q Consensus 551 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------l~~~~~~d~~~~~~lg~~~y~~~ 619 (1065)
+.-.|..+|+..-- -...-..+|.+.|.+.+|++..-.. -.+.+..|+..+..-++. |...
T Consensus 1022 ~d~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF-F~~~ 1093 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGG-------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF-FENN 1093 (1416)
T ss_pred hhHHHHHHHHHHcch-------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH-HHhH
Confidence 33334444443210 0111223444555555555433211 114455677777777777 7777
Q ss_pred HhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCC--CcchHHHH
Q 001509 620 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG--SVF--VQMPDVWI 695 (1065)
Q Consensus 620 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~--~~~~~~~~ 695 (1065)
.+|++|..++-.+-.. .-+.-++...+..-..++.+.+ .|. +.+ .....++.
T Consensus 1094 ------------~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~m---Tp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1094 ------------QQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELM---TPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred ------------HHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhc---CcCcCCCccHHHHHHHHH
Confidence 7888888776444221 1111122222222222222111 121 100 12345788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 696 NLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
.+|.++..+|.|..|-+-|.+|-.+
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhhhH
Confidence 9999999999999999988887543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=130.06 Aligned_cols=216 Identities=17% Similarity=0.191 Sum_probs=176.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~ 123 (1065)
..+|..+...|-...|+.++++. .++.....+|..+|... +|..+..+-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~le- 452 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQELE- 452 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHhc-
Confidence 77888999999999999998864 35666788888888655 67777777777
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
.|+++..|..+|.+.....-|++|.++++.. +..|...+|...+..++|.++...++..+.++|-. ...|+.+
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf~~ 525 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWFGL 525 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHHhc
Confidence 6668888888888877777777777777665 34467777777788899999999999999999988 6779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1065)
|.|.++++++..|..+|.+++.++|++..+|.+++..|...+. -.+|...+.++++.+-.+..+|.+...+....|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 9999999999999999999999999999999999999998888 8888888999988887777777777777777777
Q ss_pred HHHHHHHHHHHHhcc
Q 001509 284 HFLVEQLTETALAVT 298 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~ 298 (1065)
++.|+..+.+.+...
T Consensus 603 ~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777776554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-10 Score=112.44 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+...+-+....+|.+..+ +.++..+...|+-+.+.....++...+|.+...+..+|...+..|+|..|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3566666677788999988 889999999999999999999988889999888888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHH
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
.|++ +.+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++-.|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9999 78899999999999999999999999999999999999999999999999 9999999999998888899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 272 NYLANHFFFTGQHFLVEQLTETAL 295 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al 295 (1065)
..|+.+....|++..|..+...-+
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999998887766543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.1e-07 Score=103.50 Aligned_cols=229 Identities=14% Similarity=0.124 Sum_probs=118.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 001509 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1065)
..+++.+|+..+.++++..|+...+....|.++++.|++++|..+++..-...+++ ...+-.+-.||..+|++++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-DLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-hHHHHHHHHHHHHHhhhhHHHHH
Confidence 44566666666666666666666666666666666666666665555444444444 44455566666666666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH---------HHHH
Q 001509 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-TGQHF---------LVEQ 289 (1065)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~---------~A~~ 289 (1065)
|++++..+|+ ...+..+-..|.+.+. |.+-.+.--+..+..|+++..+.....+++. ....+ -|..
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 6666666665 5555555555555554 4433333333344555555433333333222 11111 1333
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHH
Q 001509 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1065)
Q Consensus 290 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1065)
.++..+..........+ ....-.++..+|++++|..++..-+... ..+............+...+++.+-.++..+++
T Consensus 176 m~~~~l~~~gk~~s~aE-~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAE-IILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHhccCCccchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44444433211111111 2222344556677777777774333211 112222222344566666777777777777777
Q ss_pred HhCCCc
Q 001509 370 EIYPDN 375 (1065)
Q Consensus 370 ~~~p~~ 375 (1065)
...+++
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 777665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-10 Score=114.31 Aligned_cols=125 Identities=21% Similarity=0.264 Sum_probs=115.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HHcCC--HHHHH
Q 001509 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR-YKLGQ--LGKAR 217 (1065)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~-~~~g~--~~~A~ 217 (1065)
.++.++++..+++++..+|+++.+|+.+|.++...|++++|+..|.+++.+.|++ ..++..+|.++ ...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCCCcHHHH
Confidence 6778999999999999999999999999999999999999999999999999999 78899999975 67787 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
..++++++.+|+++.++..+|..+...|+ +++|+..++++++..|.+..
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999 99999999999999887553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-09 Score=121.47 Aligned_cols=224 Identities=17% Similarity=0.093 Sum_probs=196.8
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001509 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1065)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1065)
-|........++..+...|-...|+..|++.-. +-....||...|+..+|..+..+-++ .|.++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence 355667788899999999999999999988753 66788999999999999999999998 666788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhh
Q 001509 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 460 (1065)
Q Consensus 381 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 460 (1065)
.+|.+.....-|++|.++.+.... .+...+|......++|.++...|+..+.
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sa---------------------rA~r~~~~~~~~~~~fs~~~~hle~sl~------- 513 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISA---------------------RAQRSLALLILSNKDFSEADKHLERSLE------- 513 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhH---------------------HHHHhhccccccchhHHHHHHHHHHHhh-------
Confidence 999888777667777666654332 2234456667778999999999999998
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHH
Q 001509 461 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 540 (1065)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 540 (1065)
.+|....+||.+|.+..+.+++..|...|...+...|++..+|+
T Consensus 514 ------------------------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 514 ------------------------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred ------------------------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhh
Confidence 56778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
+++..|...++..+|...++++++.+-.+..+|-+...+....|.++.|++.|.+.+...
T Consensus 558 Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.3e-11 Score=112.27 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=109.3
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
..|.+++..+|.+....+.+|..++..|++++|+..|+.++..+|.++.++..+|.+++..|++.+|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
+ ..+++.+|.|+...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77789999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-10 Score=131.22 Aligned_cols=153 Identities=13% Similarity=-0.010 Sum_probs=131.0
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001509 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
+.-+.......|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++...|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 33334445567888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
++ ...++.+|.++..+|++++|+.+|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...
T Consensus 152 ~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 152 SS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred CC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHH
Confidence 98 77788899999999999999999999998888889999999999999888 889999999988876554433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=107.60 Aligned_cols=179 Identities=20% Similarity=0.210 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1065)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1065)
..+...+-.....+|.+..+ ..++..++..|+-+.++.+..+++..+|.+ ..+...+|...+..|++..|+..|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666677777889999999 999999999999999999999999999998 6677779999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 001509 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1065)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 304 (1065)
.+.|++..+|..+|.+|.+.|+ ++.|...|.+++++.|+.+.+.++++..++..|++..|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999988763 446
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 305 SHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1065)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1065)
..+..+++.+....|++..|.....+-
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 688899999999999999987765443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-10 Score=106.88 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=110.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
..|++++..+|++..+.+.+|.+++..|++.+|+..|++++..+|.+ ..+++.+|.++..+|++++|+.+|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46888999999999999999999999999999999999999999998 77899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHH
Q 001509 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
.++..++.+|.++...|+ +++|+..++++++.+|++....
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999 9999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-08 Score=100.34 Aligned_cols=166 Identities=18% Similarity=0.161 Sum_probs=145.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
..+-....+.+..|+.+-|..++++.....|.+..+....|..+-..|+|++|+++|...+.-+|.+ ..++...-.+..
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-TVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch-hHHHHHHHHHHH
Confidence 3444566777888999999999999988889999999999999999999999999999999999999 667778788888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---
Q 001509 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF--- 285 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--- 285 (1065)
.+|..-.|+..+...++..+.+.++|..++.+|+..|+ +.+|.-+++.++-+.|.++..+..++.+++..|..+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~---f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD---FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999998 999999999999999999999999998888877533
Q ss_pred HHHHHHHHHHhcc
Q 001509 286 LVEQLTETALAVT 298 (1065)
Q Consensus 286 ~A~~~~~~al~~~ 298 (1065)
.+.++|.++++..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 3566666666553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=127.28 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1065)
+..-++-.+.-+.|.+..+...|-+++. |....+....++..||.+....|..+ +|..++..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~ 112 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLD------YVRRYPHTELFQVLVARALEAAHRSD-----------EGLAVWRGI 112 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHH------HHHhccccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHH
Confidence 4455555666667777666666655432 23334456788999999999999877 999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHH
Q 001509 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1065)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1065)
+.+.|++..+++.++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.++
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~ 191 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGY 191 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988988 7889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1065)
+.+|.++...|+.++|...|++++.....-...
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999987655544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.5e-10 Score=102.95 Aligned_cols=109 Identities=14% Similarity=0.095 Sum_probs=100.9
Q ss_pred HhhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchH
Q 001509 120 ASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1065)
Q Consensus 120 a~~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1065)
+..+. ++.-...+.+|..++..|++++|...|+.+...+|.++..|+++|.++-.+|+|.+|+..|.+++.++|++ +.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-ch
Confidence 34556 66778899999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
+++..|.|++..|+.+.|+..|+.++...-.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999988643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=112.58 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.+-.-|.-++..++|.+|+..|.++|.++|.|+..|..+|.+|.++|.|..|++.++.++.++|.. ..+|..+|.+|+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 344567777788888888888888888888888888888888888888888888888888888887 6678888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 001509 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1065)
+|++.+|+..|+++|.++|++...+..|.......+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888888888888887766666555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-08 Score=104.55 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=72.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHH
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIR 200 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~ 200 (1065)
.++..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|..|+..|++.++.+|+++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778889999999999999999999999999988654 48999999999999999999999999999883 4567
Q ss_pred HHHHHHHHHcC
Q 001509 201 LGIGLCRYKLG 211 (1065)
Q Consensus 201 ~~la~~~~~~g 211 (1065)
+.+|.|+..++
T Consensus 110 Y~~g~~~~~~~ 120 (243)
T PRK10866 110 YMRGLTNMALD 120 (243)
T ss_pred HHHHHhhhhcc
Confidence 77887765543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.1e-09 Score=113.20 Aligned_cols=255 Identities=17% Similarity=0.095 Sum_probs=139.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1065)
.-+|..|+|..++..+. +.. ...+........+.+++..+|++...+.-+.. ..+....+...++..+...
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~------~~~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LKS-FSPENKLERDFYQYRSYIALGQYDSVLSEIKK------SSSPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CHT-STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T------TSSCCCHHHHHHHHHHCTS
T ss_pred HHHHHhhhHHHHHHHhh--ccC-CCchhHHHHHHHHHHHHHHcCChhHHHHHhcc------CCChhHHHHHHHHHHHhCc
Confidence 34556677777665555 111 11223445566677777777776654432211 1122233344444444433
Q ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 356 GDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 356 g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
++-+.++..+...+... +.++.+....|.++...|++++|+.++.+. .+. +.......
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l---------------E~~al~Vq 139 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSL---------------ELLALAVQ 139 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH---------------HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc---------------cHHHHHHH
Confidence 45555555554443222 123445555666677777777777666543 122 34444566
Q ss_pred HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 513 (1065)
++...++++.|...++.+.. .+.+...+....+.+..
T Consensus 140 i~L~~~R~dlA~k~l~~~~~-------------------------------------------~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQ-------------------------------------------IDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHC-------------------------------------------CSCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCcHHHHHHHHHHHHH
Confidence 67777777777777776654 22222222222333333
Q ss_pred HcC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccch-HHHH
Q 001509 514 QIH--DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDW-VKAK 590 (1065)
Q Consensus 514 ~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~ 590 (1065)
..| .+.+|..+|+.+....+..+..++.++.+++.+|++++|...+.+++..+|++++++.+++.+....|+. +.+.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 334 5777777777776666666777777777777777777777777777777777777777777777777776 4455
Q ss_pred HHHHHhhhcCCC
Q 001509 591 ETFRAASDATDG 602 (1065)
Q Consensus 591 ~~~~~al~~~~~ 602 (1065)
+++.++....|.
T Consensus 257 ~~l~qL~~~~p~ 268 (290)
T PF04733_consen 257 RYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHCHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 555555545444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-08 Score=101.53 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=122.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCcHHHHHHHHHcCCCCC
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA-AKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
......++.+.+...+..-...++.+..+.+.++...+..++..|++.+|.+.+... +...|.... .+....
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~-------T~q~~~ 282 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTI-------TPQLSS 282 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccc-------cchhhh
Confidence 334455677778888888888888887788999999999999999999999887643 111221000 001112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-ccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
...|+|+|+++++.|.|.-+..+|.+++. .|..... + +.......-.......
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~e 336 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSME 336 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchh
Confidence 34679999999999999999999999995 2211100 0 0000000012334678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 548 (1065)
++|+.|..|...|++-.|.++|.+++.....++..|++++.+++.
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-09 Score=112.11 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1065)
....|.++...|++++|+..+... ....+.....++++..++++.|.+.++.+.+.+.+..-+....+.+.+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l 176 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 333444455555555554443221 222333334455555555555555555555444443333333333333
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 388 QLG--QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 388 ~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
..| .+.+|.-+|+.+....+..+ .+++.++.+++.+|+|++|...+.+++.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~~~~t~---------------~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDKFGSTP---------------KLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCCS--SH---------------HHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HhCchhHHHHHHHHHHHHhccCCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333 34555555555444333332 2344455555555555555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-09 Score=110.69 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|....++++.|..++..|.++.|+..++..+...|++ +..+-..+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7888899999999999999999999999999999999 677888999999999999999999999999999988899999
Q ss_pred HHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHc
Q 001509 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1065)
Q Consensus 239 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1065)
..++..|+ +.+|+..++..+..+|+++..|..|+..|...|+-.++ ....+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a--------------------~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA--------------------LLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH--------------------HHHHHHHHHhC
Confidence 99999999 88999999999999999999999999999999987554 44556778888
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001509 319 GDYEKAGLYYMASVKEI 335 (1065)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1065)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998865
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=103.72 Aligned_cols=189 Identities=20% Similarity=0.256 Sum_probs=116.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1065)
.+..++..|..++..|+|.+|+..|+.++...|.+ ..+.+.+|.+++..|+|..|+..|++.+...|+++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678888888888888888888888888887765 57788888888888888888888888888888873 34667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1065)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1065)
.+|.+++.+..-. + ....+.....+|+..|+..+...|+++.+-..
T Consensus 84 ~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A-------- 129 (203)
T PF13525_consen 84 MLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA-------- 129 (203)
T ss_dssp HHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHH--------
T ss_pred HHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHH--------
Confidence 7777766541110 0 00111122566667777777777765533211
Q ss_pred CCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHH
Q 001509 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1065)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1065)
...+..+.. ....--+.+|..|++.|.|..|+..|+.+++.++..+....++..++.+|..+|....|
T Consensus 130 ------~~~l~~l~~------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 130 ------KKRLAELRN------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ------HHHHHHHHH------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111111100 11233455677777777777777777777777766666666777777777777777644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-05 Score=86.32 Aligned_cols=400 Identities=11% Similarity=0.051 Sum_probs=236.1
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 118 ~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
++-++.+|.+..+|+.+..-+-.+ -+++....|++.+...|..+.+|.......+..++|+.-..+|.++|..--+- .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 566889999999999999888777 99999999999999999999999999999999999999999999999765443 2
Q ss_pred HHHHHHHHHHHHcCCHHHHH----HHHHHHHH---hCCCCHHHHHHHHHHHHHccc------hHhHHHHHHHHHHHHHhC
Q 001509 198 AIRLGIGLCRYKLGQLGKAR----QAFQRALQ---LDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~----~~~~~al~---~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~al~~~ 264 (1065)
-+-..+-.+....|....+. ..|+-++. .++.....|...+..+..-.- ...++.....|++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 23334444445555544433 33333333 355666666666655543211 112455556667766543
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CC-
Q 001509 265 PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP- 338 (1065)
Q Consensus 265 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~- 338 (1065)
-.+.+ .|. +|..-..-.+.++ ..-.+......|..|...+++...... ..
T Consensus 168 m~nlEkLW~----------DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 168 MHNLEKLWK----------DYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred cccHHHHHH----------HHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 22221 111 1111111111111 001111223344455555544433211 00
Q ss_pred ---CCc-------hhhhhhHHHHHHHc------CC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---------
Q 001509 339 ---HEF-------IFPYYGLGQVQLKL------GD--FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--------- 391 (1065)
Q Consensus 339 ---~~~-------~~~~~~la~~~~~~------g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------- 391 (1065)
|.. +..|.++...-... |. -..-.-.|++++..-+-++++|+..+..+...++
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~ 303 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVP 303 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccc
Confidence 110 11122221111100 11 1122335667777667778888776666665555
Q ss_pred -----HHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcccchhhhccc
Q 001509 392 -----IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLLDS 463 (1065)
Q Consensus 392 -----~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 463 (1065)
.+++..+|++++...-.... .+++.++..--..- .++..-..+.+++..
T Consensus 304 ~a~~~t~e~~~~yEr~I~~l~~~~~--------------~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~--------- 360 (656)
T KOG1914|consen 304 DAKSLTDEAASIYERAIEGLLKENK--------------LLYFALADYEESRYDDNKEKKVHEIYNKLLKI--------- 360 (656)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhHHHhcccchhhhhHHHHHHHHhh---------
Confidence 56777777777653211110 12222222211111 234444455554432
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHH
Q 001509 464 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 543 (1065)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 543 (1065)
...+..-++.++-..-.+..-...|..+|.++-+..-....++..-|
T Consensus 361 ---------------------------------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 361 ---------------------------------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred ---------------------------------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 11112234555555566666778888999988764433334444444
Q ss_pred HH-HHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhc
Q 001509 544 AI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 544 ~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 599 (1065)
.+ |...++...|.+.|+-.+...++.+..-......+...++-..|...|++++..
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 44 456889999999999999999999999999999999999999999999999876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=107.45 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=125.9
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHH
Q 001509 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1065)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 272 (1065)
|.. ...+++.+..++..|.++.|...+...+...|+|+..+...+.++...++ ..+|.+.+++++.++|+.+.++.
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 555 56788888888888888888888888888888888888888888888888 88888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHH
Q 001509 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1065)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1065)
.+|..++..|++.+|+..++..+.. .|.++..|..++.+|..+|+..+|... .+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~A--------------------~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALLA--------------------RAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHHH--------------------HHHHH
Confidence 8888888888888888888887765 466778888888888888887776443 34556
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001509 353 LKLGDFRSALTNFEKVLEIY 372 (1065)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1065)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 67788888888888887765
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-08 Score=102.16 Aligned_cols=187 Identities=12% Similarity=0.121 Sum_probs=125.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 001509 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 234 (1065)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 234 (1065)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577889999999999999999999999999999883 22358899999999999999999999999999875 557
Q ss_pred HHHHHHHHHcc---------------chHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 001509 235 VALAVMDLQAN---------------EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1065)
Q Consensus 235 ~~la~~~~~~~---------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1065)
+.+|.++...+ +......|+..|+..+...|+...+-... ..+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~--------------~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT--------------KRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH--------------HHHHHHHH---
Confidence 78887654433 22335678888899999888875332111 10000000
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHH
Q 001509 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1065)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1065)
..+.--+.+|..|.+.|.|..|+.-++.++..++..+....+++.++..|...|..++|..+..
T Consensus 173 ---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 173 ---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred ---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 0112223455555555666556655555555555555555555555555555555555554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-05 Score=87.68 Aligned_cols=295 Identities=12% Similarity=0.013 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
.++|.+|+....+.++..|+.+.+....|..+++.|+.++|..+++..-...+++...+-.+-.+|...+++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 35688999999999999999999999999999999999999988888877788888899999999999999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cch------HhHHHHHHHHHH
Q 001509 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEA------AGIRKGMEKMQR 259 (1065)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~------~~~~~A~~~~~~ 259 (1065)
+++..+|+ ....+.+=.+|.+-++|.+-.++--+..+..|.++..+.....+.+.. ... --..-|...+++
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99999999 356778888899999888777777777778888876644444443332 110 012234455566
Q ss_pred HHHhC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 001509 260 AFEIY-PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1065)
Q Consensus 260 al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1065)
.++.. +-... -....-.++...|.+++|..++..-+.... .+.....-......+...+++.+-.++..+++...+
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l-~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~- 257 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL-TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN- 257 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-
Confidence 66555 22221 122334456678889999998854443211 122233344556677788889888888888887432
Q ss_pred CCCchhhhhh-------------HHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 338 PHEFIFPYYG-------------LGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 338 ~~~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
+....+.. .+..+-..+..+..++...+.+..+..++ -++..+-.-+...|+.+++...|-+-+
T Consensus 258 --Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 258 --DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred --cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 22111111 11111122333334444444443322222 233333333346688888777766544
Q ss_pred HhCC
Q 001509 404 KIDP 407 (1065)
Q Consensus 404 ~~~p 407 (1065)
..-|
T Consensus 336 g~kp 339 (932)
T KOG2053|consen 336 GDKP 339 (932)
T ss_pred CCCc
Confidence 4333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=108.18 Aligned_cols=119 Identities=21% Similarity=0.153 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
+.+-+-|.-++..++|.+|+..|.+|+. ++|.++..|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~-------------------------------------------l~P~nAVyy 118 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIE-------------------------------------------LDPTNAVYY 118 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------------------------------------cCCCcchHH
Confidence 5567779999999999999999999998 778899999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccc
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
.+.|.+|.++|.++.|++-++.++.++|.+..+|.+||..|..+|++.+|+..|++++.++|++...+..|.++-.+.++
T Consensus 119 cNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 119 CNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777766
Q ss_pred hH
Q 001509 586 WV 587 (1065)
Q Consensus 586 ~~ 587 (1065)
..
T Consensus 199 ~~ 200 (304)
T KOG0553|consen 199 PK 200 (304)
T ss_pred CC
Confidence 54
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-08 Score=99.14 Aligned_cols=177 Identities=21% Similarity=0.239 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 001509 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLK 380 (1065)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~ 380 (1065)
.+..++..|..++..|+|.+|+..|..++...+.++....+.+.+|.+++..|++..|+..|+..+..+|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 356777788888888888888888888888777777777788888888888888888888888888887775 45777
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 381 ALGHIYVQLG-----------QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449 (1065)
Q Consensus 381 ~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 449 (1065)
.+|.+++... ...+|+..|+..+...|++..+. +|...+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~-----------------------------~A~~~l~ 134 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE-----------------------------EAKKRLA 134 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH-----------------------------HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH-----------------------------HHHHHHH
Confidence 7777766542 34578888888888888876421 1111111
Q ss_pred HHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 450 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 529 (1065)
Q Consensus 450 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 529 (1065)
.+.. ....--+.+|..|.+.|.+..|+..++.++
T Consensus 135 ~l~~----------------------------------------------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 135 ELRN----------------------------------------------RLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHH----------------------------------------------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHH----------------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1111 022344567777888888888888888888
Q ss_pred HHCCCh---HHHHHHHHHHHHHcCCHHHH
Q 001509 530 FKYQDY---VDAYLRLAAIAKARNNLQLS 555 (1065)
Q Consensus 530 ~~~p~~---~~a~~~la~~~~~~g~~~~A 555 (1065)
...|+. ..++..++..+...|....|
T Consensus 169 ~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 169 ENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 877776 34677777777777777643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-09 Score=95.29 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=98.1
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 154 VLEAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 154 al~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
+..+. ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+..|.+++.++|+++.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 34556 6778889999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCC
Q 001509 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1065)
+++.+|.+++..|+ ...|...|+.++...-.
T Consensus 105 ~~~~ag~c~L~lG~---~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 105 APWAAAECYLACDN---VCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHhcc
Confidence 99999999999999 99999999998887633
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.9e-09 Score=115.02 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
+...|..++..|+|+.|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999999999998 67789999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
|+++.|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998877777664443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-08 Score=92.49 Aligned_cols=133 Identities=26% Similarity=0.226 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 81 ~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+|+.+++-.|.+|-.+|-.. -|.--|.+++.+.|.-|.++..+|..+...|+|+.|.+.|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 46666777777777777554 7888889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHH-HHHHHh
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF-QRALQL 226 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~~ 226 (1065)
+..+.++.|..++--|+|.-|...+.+..+.+|++|-.+ ..-.+-...-+..+|...+ +++...
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~--LWLYl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS--LWLYLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH--HHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999884332 1112223344566666544 344333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=92.13 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~ 202 (1065)
+.+++.+|..++..|++++|+..|.+++..+|++ ..+++.+|.+++..|++..|+..|+.++..+|+.+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678899999999999999999999999998876 57889999999999999999999999999988862 467889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
+|.++..+|+++.|+..|.+++...|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999887654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.6e-05 Score=84.95 Aligned_cols=79 Identities=14% Similarity=0.255 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCCHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDNVPAL 165 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~a~ 165 (1065)
-+++|..|...++. +...|+....|..++.+.+..|+.--|..+|..+-. ...+-...+
T Consensus 456 d~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fy 534 (1636)
T KOG3616|consen 456 DDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFY 534 (1636)
T ss_pred ccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHH
Confidence 47889999887764 567788888899999999999988888777754321 112223445
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 001509 166 LGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~ 185 (1065)
...|...+...+|.+|..+|
T Consensus 535 kvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 535 KVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 55555555556666666555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=109.15 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1065)
+...|..++..|+|.+|+.+|.+++..+|++ ..+++.+|.++..+|+++.|+..+.+++.++|.+..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 245 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
|+ +.+|+..|++++.++|+++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888887766443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=0.00032 Score=75.47 Aligned_cols=480 Identities=14% Similarity=0.069 Sum_probs=257.3
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH-ccchHhHHHHHHHHHHHHHhCCCCHHHH
Q 001509 198 AIRLGIGLCRYKLG--QLGKARQAFQRALQLDPENV---EALVALAVMDLQ-ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 198 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
..++++|..+...| +..+++.+++..+...|... .....||.+++. ..+ ++-|...++++..+...-|..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N---~elAksHLekA~~i~~~ip~fy 84 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKN---VELAKSHLEKAWLISKSIPSFY 84 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHcccccHH
Confidence 34555666666666 66666666666666555431 224444443332 222 5555555555544432222110
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCC-chhhhhhHH
Q 001509 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG-DYEKAGLYYMASVKEINKPHE-FIFPYYGLG 349 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~-~~~~~~~la 349 (1065)
....+++..++.+|+... .+..|...+.++++.....|- .-...+.++
T Consensus 85 ------------------------------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLa 134 (629)
T KOG2300|consen 85 ------------------------------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLA 134 (629)
T ss_pred ------------------------------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 123456667777777766 677777777777765433332 223456677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHH--HHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHcC
Q 001509 350 QVQLKLGDFRSALTNFEKVLEI-YPDN---CETLKA--LGHIYVQLGQ---IEKAQELLRKAAKIDPRDAQARTLLKKAG 420 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~--la~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 420 (1065)
+++.-..++..|++.+.--... ++-. ..+++. .+.++....+ ...+.....++......++.-...++
T Consensus 135 ql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk--- 211 (629)
T KOG2300|consen 135 QLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK--- 211 (629)
T ss_pred HHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH---
Confidence 8888888888888774322221 1111 112222 2333333333 33444444444444333333222221
Q ss_pred CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 421 EEVPIEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 421 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
..+.++-. .|...|+...+...+++.-.. ..............+ +.......+. .-|
T Consensus 212 -----vFyl~lql~yy~~~gq~rt~k~~lkQLQ~s-iqtist~~~~h~e~i------lgsps~~l~~----------wlp 269 (629)
T KOG2300|consen 212 -----VFYLVLQLSYYLLPGQVRTVKPALKQLQDS-IQTISTSSRGHDEKI------LGSPSPILFE----------WLP 269 (629)
T ss_pred -----HHHHHHHHHHHhcccchhhhHHHHHHHHHH-HhccCCCCCCccccc------cCCCChHHHh----------hcc
Confidence 22333333 345568877777766644321 000000000000000 0000000000 011
Q ss_pred c-hhHHHHHHH--HHHHHcCChHHHHHHHHHHHHHCCC------h--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 500 N-KVTVLFNLA--RLLEQIHDTVAASVLYRLILFKYQD------Y--------VDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 500 ~-~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~------~--------~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
. ..-++..+. ..-.-.|-+++|.++-.+++..... . ...+-.++.+-.-.|++.+|++.+..+
T Consensus 270 keqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm 349 (629)
T KOG2300|consen 270 KEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDM 349 (629)
T ss_pred HhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 111111111 1112346677777777777653211 1 113344566677889999999888777
Q ss_pred HHHC---CC-------ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHH--HhhHHHHHHHHHhhhhcChhHH
Q 001509 563 LKVN---GK-------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT--LSLGNWNYFAALRNEKRAPKLE 630 (1065)
Q Consensus 563 l~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~--~~lg~~~y~~~~~~~~~~~~~~ 630 (1065)
.+.. |. .+.+.+.+|......+-++.|...|..+.+.....+..++ ..++.. |...
T Consensus 350 ~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~----------- 417 (629)
T KOG2300|consen 350 KNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI----------- 417 (629)
T ss_pred HHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh-----------
Confidence 6653 43 3457778888888899999999999999998777666544 456666 7776
Q ss_pred hhhHHHHHHHHHHHHhhCCcc----------hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCcchHHHHHHHH
Q 001509 631 ATHLEKAKELYTRVIVQHTSN----------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS-VFVQMPDVWINLAH 699 (1065)
Q Consensus 631 ~~~~~~A~~~~~~~l~~~p~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~~lg~ 699 (1065)
++.+.-.+.++ .+.|.| ..+++..|...+.++++.+|...+.+.++..... ...-..-.+..||+
T Consensus 418 -~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~ 493 (629)
T KOG2300|consen 418 -GDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSH 493 (629)
T ss_pred -ccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence 44333333322 233432 2345566777788999999999999998876211 00012335677899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCcHHHH----HHHHHHHHHhhc--HHHHHHHHH
Q 001509 700 VYFAQGNFALAMKMYQNCLRKFYYNTDAQIL----LYLARTHYEAEQ--WQDCKKSLL 751 (1065)
Q Consensus 700 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~lg~~~~~~g~--~~~A~~~~~ 751 (1065)
+....|+..++..+..-++..-...+|..+. ..+-.+|...|+ .....+.|.
T Consensus 494 v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 494 VFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 9999999999999999888776566662222 233445555666 444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=89.59 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
+..++.+|..|-..|-+.-|...|.+++.+.|.-+.++..+|..+...|+|+.|...|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 34678889999999999999999999999999999999999999999999999999999999999999 77789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHH
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
+--|++.-|...|.+-.+.+|+++---..|-....... +.+|...+.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d----P~~A~tnL~ 190 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD----PKQAKTNLK 190 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC----HHHHHHHHH
Confidence 99999999999999999999998854333332222222 555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.1e-08 Score=97.82 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHH
Q 001509 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYK 186 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~Al~~~~ 186 (1065)
.+..+.-++.-+..+|+++..|..+|.+|+..|++..|...|.+++++.|+|+..+..+|.+++.... ..++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34455555666666777777777777777777777777777777777777777777776666655432 346666677
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1065)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1065)
+++..+|.+ ..+++.+|..++..|+|.+|+..|+.++...|.+.
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777777766 55566667777777777777777777666666543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=89.48 Aligned_cols=313 Identities=16% Similarity=0.122 Sum_probs=205.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----chHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP---ALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIR 200 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~ 200 (1065)
.-.+..|.-++...++.+|+..+.+.+..-.+... .+-.+..+....|.|.+++..--..+...-+. .-.++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777778888888888877765433322 23334456677777777766544433332111 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC------HH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC------AM 269 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 269 (1065)
..++..+..+-++.+++.+-...+.+....+ .+...++..+...+. ++++++.|+.++....++ ..
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~---fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV---FQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH---HHHHHHHHHHHHHHhhccCCceeeee
Confidence 6777777777778888877777766533222 445566666666666 888888888887754332 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCC
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPH 339 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~ 339 (1065)
++..|+.+|....++++|.-+..++........ ....+++.++.++..+|..-+|.++.+.+.+.. ++.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677788888888888888888777776543221 234567788999999999999999999887632 2445
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCC
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQIEK-----AQELLRKAAKIDPR 408 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~ 408 (1065)
........+|.+|...|+.+.|..-|+.+...... ...++...+.++....-..+ |+++-.+++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 56667788999999999999999999998875321 13445555555544433333 77777777665433
Q ss_pred cHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 409 DAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 409 ~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
-..-... ..+...++.+|...|.-++-...+.++-+
T Consensus 324 IG~K~~v---------lK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 324 IGAKLSV---------LKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhhHHH---------HHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 2211111 25678889999888888877777766544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-07 Score=93.06 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHH
Q 001509 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1065)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1065)
+....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.. ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4556788999999999999999999999999887653 4689999999999999999999999999999998 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCC
Q 001509 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1065)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 267 (1065)
.+|.++...|+...+...+..++.. +.+|+..+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666665432 677888888888888776
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=88.61 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=100.1
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchH
Q 001509 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1065)
.+..+.+..-...+..|.-++..|++++|..+|.-+.-.+|.++..|+++|.++...++|++|+..|..+..+.+++ +.
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~ 106 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YR 106 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CC
Confidence 34556666667889999999999999999999999999999999999999999999999999999999999999988 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001509 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1065)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1065)
+.+..|.|++.+|+...|+.+|..++. .|.+
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 689999999999999999999999998 4543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-06 Score=89.16 Aligned_cols=247 Identities=15% Similarity=0.126 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETL 379 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~ 379 (1065)
......|.-++...++.+|+..+.+.+..+.+.......+-.+..+...+|.|++++.+--..+....+ -.+++
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777788888888888877655433333344555667777888888776654444432111 24678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhh
Q 001509 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 459 (1065)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 459 (1065)
.+++..+....++.+++.+-...+.+....+ ...+......++..+...+.++++++.|+.++....
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~----------~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~--- 153 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRA----------GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH--- 153 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc----------ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh---
Confidence 8889999888899999988887777644333 122335677789999999999999999999987422
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh----
Q 001509 460 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---- 535 (1065)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 535 (1065)
..........++..+|.+|....++++|..+..++..+...+
T Consensus 154 ----------------------------------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 154 ----------------------------------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred ----------------------------------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 111223356789999999999999999999999988754322
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCChHHHHHhhhhhccccchHHHHHHHHHhhhc
Q 001509 536 ------VDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWVKAKETFRAASDA 599 (1065)
Q Consensus 536 ------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 599 (1065)
.-+++.++..+..+|..-.|.++.+++.++. +-.......+|.+|...|+.+.|...|+.+...
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2366788888999999999999999998764 223345667999999999999999999988763
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00032 Score=76.67 Aligned_cols=189 Identities=14% Similarity=0.168 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCChH-HHHHhhhhhccccchHHHHHH
Q 001509 518 TVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKET 592 (1065)
Q Consensus 518 ~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 592 (1065)
.+++..+|+.++..-- .+...++.++..-...- ..+.....+++++.+...++. +|..+-+.-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 6677788888775322 23344444444333222 366777888888887655554 555566666666678899999
Q ss_pred HHHhhhcCCC-CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHH
Q 001509 593 FRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 671 (1065)
Q Consensus 593 ~~~al~~~~~-~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 671 (1065)
|.++-+.... ++.+...++-. |+.. ++..-|..+|+--|...++.+...+.....+...++-..|
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mE--y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALME--YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHH--HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 9999875443 35554444433 5555 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 001509 672 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 722 (1065)
Q Consensus 672 ~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 722 (1065)
..+|++++...- + ......+|..+-..-..-|+...+++.=++-...|+
T Consensus 455 R~LFEr~l~s~l-~-~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 455 RALFERVLTSVL-S-ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHhccC-C-hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999998711 0 013456888887777788998888888777777766
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=86.87 Aligned_cols=107 Identities=29% Similarity=0.372 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1065)
..++.+|..+...|++++|+..|..++...+.++....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5678888888888889889888888887654444446678888999999999999999999988887775 5778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001509 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1065)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 412 (1065)
|.++...|++++|+.++.+++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 999999999999999999999888887753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-05 Score=85.21 Aligned_cols=440 Identities=14% Similarity=0.108 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHH--h---CC----------CCHHHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQL-LLAKGEVEQASSAFKIVLE--A---DR----------DNVPALLGQACVE 172 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~--~---~p----------~~~~a~~~la~~~ 172 (1065)
.|+..++.+...-.++-.+...++..+.+ |+..|.+.. ...++.... . .| .+....+..|.++
T Consensus 32 ~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi~ 110 (696)
T KOG2471|consen 32 EFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVIF 110 (696)
T ss_pred chHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhheee
Confidence 35577777777777766555555555544 444454322 222222211 1 11 2356678889999
Q ss_pred HHcCChHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHH---HHh---CC--CCH---------
Q 001509 173 FNRGRYSDSLEFYKRALQVHPS----CPGAIRLGIGLCRYKLGQLGKARQAFQRA---LQL---DP--ENV--------- 231 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~---~p--~~~--------- 231 (1065)
+....+..|++........-.. ....+-+..-..+......++|+.++.-. +.. .| ++.
T Consensus 111 yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~ 190 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTL 190 (696)
T ss_pred eeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccC
Confidence 9999999999887766554321 12233344444555555666666544322 211 01 000
Q ss_pred ----------------HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 232 ----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1065)
Q Consensus 232 ----------------~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1065)
.+...-...++...+ ..-+....+.+.....+.+.++...+..++..|+|.+|.+++...-
T Consensus 191 s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~---Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn 267 (696)
T KOG2471|consen 191 SPSAAERSFSTADLKLELQLYKVRFLLQTRN---LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN 267 (696)
T ss_pred CcchhcccchhhccchhhhHhhHHHHHHHHH---HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc
Confidence 011111122233322 5555555666666667889999999999999999999998876542
Q ss_pred h-ccCC---CCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------C-------CCCCchhhhhhHHHHHHH
Q 001509 296 A-VTNH---GPT--KSHSYYNLARSYHSKGDYEKAGLYYMASVKEI--------N-------KPHEFIFPYYGLGQVQLK 354 (1065)
Q Consensus 296 ~-~~~~---~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~-------~~~~~~~~~~~la~~~~~ 354 (1065)
- .... .|. .-..|.++|.++++.|.|.-+..+|.+++... . .......+.|+.|..|..
T Consensus 268 i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 268 IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH 347 (696)
T ss_pred cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh
Confidence 1 1111 111 23456899999999999999999999999511 0 112334678999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------------------------------------------
Q 001509 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-------------------------------------------- 390 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-------------------------------------------- 390 (1065)
.|++-.|.++|.+++..+-.+|..|..++.+.....
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~ 427 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSN 427 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceecccccc
Confidence 999999999999999999999999999999887430
Q ss_pred -----CHHHHHHHHHHHHHhCCCcHHHHHHHH------Hc-------------------CC---CCC-------------
Q 001509 391 -----QIEKAQELLRKAAKIDPRDAQARTLLK------KA-------------------GE---EVP------------- 424 (1065)
Q Consensus 391 -----~~~~A~~~~~~al~~~p~~~~a~~~l~------~~-------------------~~---~~~------------- 424 (1065)
-.+-|.-+++.++-+-|...+.-..+. +. +. ..|
T Consensus 428 ~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm 507 (696)
T KOG2471|consen 428 QLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENM 507 (696)
T ss_pred CCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHH
Confidence 023455555555554432211000000 00 00 000
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhH
Q 001509 425 -IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503 (1065)
Q Consensus 425 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 503 (1065)
..++-+.+.+-...|+.-.|+..-.+.+.... ...
T Consensus 508 ~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~--------------------------------------------lS~ 543 (696)
T KOG2471|consen 508 RQAIFANMAYVELELGDPIKALSAATKLLQLAD--------------------------------------------LSK 543 (696)
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh--------------------------------------------hhh
Confidence 24566667777888999999999888886422 223
Q ss_pred HHHHHHH-----HHHHcCChHHHHHHHHHHHH-----------------------HCC----------Ch-----HHHHH
Q 001509 504 VLFNLAR-----LLEQIHDTVAASVLYRLILF-----------------------KYQ----------DY-----VDAYL 540 (1065)
Q Consensus 504 ~~~~la~-----~~~~~g~~~~A~~~~~~al~-----------------------~~p----------~~-----~~a~~ 540 (1065)
++..+|. .+..+.+..+|...+.--+- .+| .. ...++
T Consensus 544 ~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~ 623 (696)
T KOG2471|consen 544 IYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFA 623 (696)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHH
Confidence 3333333 33444555555554433110 011 00 12557
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHhhhhhccccchHHHHHHHHHh
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKNDDWVKAKETFRAA 596 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 596 (1065)
+||..+.-+|++++|..++..+..+-+ ..+.+......+-+++|....|...+++.
T Consensus 624 nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 624 NLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 788888888888888888887777766 44555555555666778877777777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.1e-06 Score=101.12 Aligned_cols=229 Identities=15% Similarity=0.193 Sum_probs=187.8
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 001509 17 VALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYL 96 (1065)
Q Consensus 17 i~~~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~ 96 (1065)
+|++.-|.++.|+..++...|...=.|+..-...+..+..+.|+.+.++++..- + | ....++..+|..+-.+-...
T Consensus 1435 ~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N--~-REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1435 RDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI-N--F-REEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred cccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-C--c-chhHHHHHHHHHHHhHHHhh
Confidence 556777999999999999999999999999999999999999999999997641 1 1 11234555666555555555
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 97 GKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 97 g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1065)
|--+ .-.+.|++|.+..- -...+..+..+|...+.+++|.++|+.+++...+....|..+|..++++.
T Consensus 1511 G~ee-----------sl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1511 GTEE-----------SLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred CcHH-----------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc
Confidence 5322 45667777765532 34567788899999999999999999999988888899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHH
Q 001509 177 RYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~ 255 (1065)
+-+.|..++.+|+..-|.. ...+.-..|.+-++.|+.+.++.+|+-.+..+|.-.+.|..+...-...++ ......
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~ 1655 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRD 1655 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHH
Confidence 9999999999999999984 134455678888999999999999999999999999999999999999888 888888
Q ss_pred HHHHHHHhC
Q 001509 256 KMQRAFEIY 264 (1065)
Q Consensus 256 ~~~~al~~~ 264 (1065)
+|++++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 999988765
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00069 Score=73.01 Aligned_cols=424 Identities=16% Similarity=0.120 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHH
Q 001509 42 LWLIIAREYFKQG--KVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1065)
Q Consensus 42 ~~~~~a~~y~~~g--~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~ 119 (1065)
.++-+|..+-.+| ++..+|+.++......+.. .-.+.....||.+.+..-+ +++.|...+++
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~------~veart~LqLg~lL~~yT~----------N~elAksHLek 72 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISF------LVEARTHLQLGALLLRYTK----------NVELAKSHLEK 72 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChH------HHHHHHHHHHHHHHHHHhc----------cHHHHHHHHHH
Confidence 4567888888888 8999999999986654421 1233445566766654432 34578888888
Q ss_pred HhhcC---CCCh----hhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 120 ASRID---MHEP----STWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 120 a~~~~---p~~~----~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
+..+- |+.. .+.-.++.+|.... .+..|...+.+++......+ ..++.+|.++.-..++..|++.+.-
T Consensus 73 A~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 73 AWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred HHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 76543 4332 34556788888777 88999999999999876554 4568899999999999999988432
Q ss_pred HHHh-CCCCchHHHHH------HHHHHHHcCC---HHHHHHHHHHHHHhCCCCH---HH----HHHHHHH-HHHccchHh
Q 001509 188 ALQV-HPSCPGAIRLG------IGLCRYKLGQ---LGKARQAFQRALQLDPENV---EA----LVALAVM-DLQANEAAG 249 (1065)
Q Consensus 188 al~~-~p~~~~~~~~~------la~~~~~~g~---~~~A~~~~~~al~~~p~~~---~a----~~~la~~-~~~~~~~~~ 249 (1065)
.... +|-. ..++. .+.++....+ ...+......+......++ +. ++.+-.. |...|+...
T Consensus 153 ga~sAd~~~--~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt 230 (629)
T KOG2300|consen 153 GAESADHIC--FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRT 230 (629)
T ss_pred cccccchhh--hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 2211 1222 22222 2333333333 3344444444444332222 21 2223322 333455334
Q ss_pred HHHHHHHHHHHHHh-CCC------------CH-----------HHHHHH--HHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 001509 250 IRKGMEKMQRAFEI-YPY------------CA-----------MALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPT 303 (1065)
Q Consensus 250 ~~~A~~~~~~al~~-~p~------------~~-----------~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 303 (1065)
...+++.++..+.. .+. .+ .++..+ ...-...|-+++|.++.++++......+.
T Consensus 231 ~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq 310 (629)
T KOG2300|consen 231 VKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQ 310 (629)
T ss_pred hHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 55555655555432 111 11 111111 12223457788888888888865433322
Q ss_pred c-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-------chhhhhhHHHHHHHcCCHHHHHHHH
Q 001509 304 K-----------SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-------FIFPYYGLGQVQLKLGDFRSALTNF 365 (1065)
Q Consensus 304 ~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1065)
. ...+-.++.+-.-.|++.+|+.....+.+.....|. ....++.+|......|.++.|...|
T Consensus 311 ~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 311 ADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1 123344566677799999999999888875544444 2334566777777888999999999
Q ss_pred HHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 001509 366 EKVLEIYPD-N--CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ---ARTLLKKAGEEVPIEVLNNIGVIHFEKG 439 (1065)
Q Consensus 366 ~~~l~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~~l~~~~~~~~~~~~~~la~~~~~~g 439 (1065)
..+.+.-.. + ..+..++|.+|.+.|+-+.-.+.++. +.|.+.. ...+ ...+++..|...+.++
T Consensus 391 ~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l--------~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 391 IEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRL--------EASILYVYGLFAFKQN 459 (629)
T ss_pred HHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHH--------HHHHHHHHHHHHHHhc
Confidence 999876332 2 34566789999998876654444443 3443211 1111 1257888899999999
Q ss_pred CHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChH
Q 001509 440 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 519 (1065)
Q Consensus 440 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 519 (1065)
++.+|...+.+.++.... .+......-.+..++.+....|+..
T Consensus 460 ~lnEaK~~l~e~Lkmana-------------------------------------ed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 460 DLNEAKRFLRETLKMANA-------------------------------------EDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred cHHHHHHHHHHHHhhcch-------------------------------------hhHHHHHHHHHHHHHHHHHHhcchH
Confidence 999999999998874210 0012224456677888888889999
Q ss_pred HHHHHHHHHHHH
Q 001509 520 AASVLYRLILFK 531 (1065)
Q Consensus 520 ~A~~~~~~al~~ 531 (1065)
++.....-++..
T Consensus 503 es~nmvrpamql 514 (629)
T KOG2300|consen 503 ESRNMVRPAMQL 514 (629)
T ss_pred HHHhccchHHHH
Confidence 888887777653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=83.68 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
+++.+|.+++..|++++|+..|.+++...|.+..+++.+|.++...|+++.|+.+|++++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888888888888888888888888888887 4667888888888
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 001509 210 LGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1065)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888887766
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-07 Score=96.63 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHh---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1065)
....|+.+|.+++ .++|..+.+|-.++.+++.. ....+|..+..+++.++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999998888765 24578889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHH-HHHHccchHhHHHHH
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA-LAV-MDLQANEAAGIRKGM 254 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~-~~~~~~~~~~~~~A~ 254 (1065)
+++.|+..|++++.++|+. +.+++..|......|+.+.|+..++++++++|.-..+-.. +.. +|+..+ +++|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 8889999999999999999999999999999976655332 222 444443 67777
Q ss_pred HHHHHHH
Q 001509 255 EKMQRAF 261 (1065)
Q Consensus 255 ~~~~~al 261 (1065)
..|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 7765543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=80.53 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1065)
++..|+.+|.+++..|++++|+..|.+++..+|+++.+++.+|.++...| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 46666666666666655
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-07 Score=97.15 Aligned_cols=166 Identities=13% Similarity=0.080 Sum_probs=128.0
Q ss_pred hcCCCCh---hhH----HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChH
Q 001509 122 RIDMHEP---STW----VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYS 179 (1065)
Q Consensus 122 ~~~p~~~---~~~----~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~ 179 (1065)
...|.+. .+| +.+|...+..+. ...|+.+|.+++ ..+|....++..+|.|++.. ....
T Consensus 242 r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~ 321 (458)
T PRK11906 242 RLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQ 321 (458)
T ss_pred cCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 3335555 444 677877776664 578899999999 88999999999999988765 2345
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHH
Q 001509 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1065)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1065)
+|+.+..+++.++|.+ +.++..+|.+++..++++.|...|++++.++|+...+++..|.+....|+ .++|+..+++
T Consensus 322 ~a~~~A~rAveld~~D-a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~ 397 (458)
T PRK11906 322 KALELLDYVSDITTVD-GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 7888889999999999 77888999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q 001509 260 AFEIYPYCAMALNYLANH-FFFTGQHFLVEQLT 291 (1065)
Q Consensus 260 al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~ 291 (1065)
+++++|....+-...-.+ .+...-.+.++.+|
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 999998765433222222 33333344444444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=97.39 Aligned_cols=111 Identities=13% Similarity=0.170 Sum_probs=97.0
Q ss_pred hHHHhHHHHHH-HhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHH
Q 001509 652 LYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 729 (1065)
Q Consensus 652 ~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 729 (1065)
...++..+..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|+++.|+..|+++++.||..+. +.+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 34555666654 5679999999999999999996643 4689999999999999999999999999999987665 899
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 730 LLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
++.+|.++...|+++.|+.+|++++..+|++..+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999999999999987544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-07 Score=95.20 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=92.0
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHH
Q 001509 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1065)
Q Consensus 128 ~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1065)
...++..|..+ +..|+|++|+..|+.++..+|++ +.+++.+|.+|+..|+|++|+..|++++..+|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36677788776 56789999999999999999987 5789999999999999999999999999988876 366788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
.+|.++..+|+++.|+..|+++++..|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 889999999999999999999999999877543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.7e-06 Score=81.99 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1065)
.+..|+..|...+..|++++|+..|+.+....|.+ ..+.+.++.++++.++|+.|+..+++.+.++|.++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988865 57889999999999999999999999999999883 44556
Q ss_pred HHHHHHH
Q 001509 202 GIGLCRY 208 (1065)
Q Consensus 202 ~la~~~~ 208 (1065)
..|.+++
T Consensus 113 lkgLs~~ 119 (254)
T COG4105 113 LKGLSYF 119 (254)
T ss_pred HHHHHHh
Confidence 6666644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-07 Score=91.42 Aligned_cols=120 Identities=22% Similarity=0.159 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHH
Q 001509 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
.+.-+.-++..+..+|++ ..-|..+|.+|..+|++..|...|.+++++.|++++.+..++.+++...+.....++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 344455566666777777 5557777777777777777777777777777777777777777766665555566777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001509 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1065)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1065)
++++..+|.++.+++.||..++..|+|.+|...++..+...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-05 Score=79.91 Aligned_cols=248 Identities=16% Similarity=0.086 Sum_probs=154.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1065)
.+-+|..|.|..++......-.. +........+.++|..+|.+..-+.-....- .....+...++.....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~----~~~~e~d~y~~raylAlg~~~~~~~eI~~~~------~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS----KTDVELDVYMYRAYLALGQYQIVISEIKEGK------ATPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc----cchhHHHHHHHHHHHHccccccccccccccc------CChHHHHHHHHHHhhC
Confidence 34456667777666655554322 2445666777777777777654433222111 1112233334444444
Q ss_pred cCCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHH
Q 001509 355 LGDFRSALTNFEKVLE-IY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la 432 (1065)
-++.+.-+..+...+. .. ..+......-|.+|...|++++|+........+ ++.-.-.
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------------E~~Al~V 144 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------------EAAALNV 144 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------------HHHHHHH
Confidence 4444444443333332 22 223345555677788888888888877763322 2222224
Q ss_pred HHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHH
Q 001509 433 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512 (1065)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 512 (1065)
.++.+..+++-|...++++.... .-.++.++|..|
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---------------------------------------------ed~tLtQLA~aw 179 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---------------------------------------------EDATLTQLAQAW 179 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---------------------------------------------hHHHHHHHHHHH
Confidence 56677777888888888776521 333444555555
Q ss_pred HHc----CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHH
Q 001509 513 EQI----HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588 (1065)
Q Consensus 513 ~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 588 (1065)
... +++..|.-+|+..-...|..+...+..+.+++.+|++++|...++.++..++++|+++.++..+-...|...+
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 432 4678888888888887777788888888888889999999999999998888889888888888888887766
Q ss_pred HHHHHHHhh
Q 001509 589 AKETFRAAS 597 (1065)
Q Consensus 589 A~~~~~~al 597 (1065)
+..-+-.-+
T Consensus 260 ~~~r~l~QL 268 (299)
T KOG3081|consen 260 VTERNLSQL 268 (299)
T ss_pred HHHHHHHHH
Confidence 655444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=94.54 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=99.9
Q ss_pred HhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHHHHH
Q 001509 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 733 (1065)
Q Consensus 655 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~l 733 (1065)
++..|.-++..|+|..|...|...+..+|++.+ .+.++|.||.+++.+|+|..|...|..+++.+|..+. ++.++.|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 566677778899999999999999999998865 5789999999999999999999999999999988776 8999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 734 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 734 g~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
|.+....|+.++|..+|+++++.+|+.+.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999987765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.8e-07 Score=89.68 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=103.4
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 573 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 573 (1065)
..+.....++++|.++...|++++|+.+|++++...|+. ..++..+|.++...|+++.|+.++.+++...|.++..+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 345677889999999999999999999999999877653 57899999999999999999999999999999999999
Q ss_pred HHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcc
Q 001509 574 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 651 (1065)
Q Consensus 574 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 651 (1065)
..+|.++...|+...+...+..++ ..+.+|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~----------------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAE----------------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHH----------------------------------HHHHHHHHHHHHHHhhCchh
Confidence 999999999888776664444321 55677889999999999887
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.3e-08 Score=78.98 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 228 (1065)
++.+|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46677777777777888888888888888777777 667777777777777 67777777777777776
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-07 Score=88.68 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001509 111 ILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
..+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34455555444444443 4566777888888888888888888887776542 347778888888888888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcC
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
.+++.+.|.. ...+..+|.++..+|
T Consensus 96 ~~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 96 FQALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 8888877777 455677777777333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-06 Score=101.47 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=116.0
Q ss_pred CCCChhh--HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHH
Q 001509 124 DMHEPST--WVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--------YSDSLEFYKRALQ 190 (1065)
Q Consensus 124 ~p~~~~~--~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--------~~~Al~~~~~al~ 190 (1065)
-|.++.+ ++.+|..++..+. +..|+.+|+++++.+|+++.++..++.++..... ...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555554 4667888877665 8899999999999999999999988887766432 3355555566555
Q ss_pred h--CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH
Q 001509 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 191 ~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
. .|.. +.++..+|..+...|++++|...|++++.++| +..+|..+|.++...|+ +++|+..|.+++.++|..+
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788889999999999999999999999999 57899999999999999 9999999999999999988
Q ss_pred H
Q 001509 269 M 269 (1065)
Q Consensus 269 ~ 269 (1065)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.1e-08 Score=83.41 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001509 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1065)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (1065)
+|+++.|+.+|++++...|. +...++.+|.+++..|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 56777777777777777774 345566677777777777777777777 6666655 4556666777777777777777
Q ss_pred HHHHH
Q 001509 219 AFQRA 223 (1065)
Q Consensus 219 ~~~~a 223 (1065)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=86.51 Aligned_cols=123 Identities=20% Similarity=0.267 Sum_probs=95.8
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHH
Q 001509 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1065)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1065)
..++...+...++.++...+..+....+.+.+|.+++..|++++|...|..++...+.+.....+.+.++.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 46667777777777777666665667788889999999999999999999988754333334567888999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
+|+..+..+ ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999998663 3344457788889999999999999999998764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.66 E-value=9e-07 Score=84.81 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=70.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHcCCHH
Q 001509 140 AKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLG 214 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~ 214 (1065)
..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ...+++.+|.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666666666666666 4556666777777777777777777776665443 2335566666667777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Q 001509 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1065)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~a 260 (1065)
+|+..+.. +...+-.+.++..+|.++...|+ +++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHh
Confidence 76666654 22223334445556666666655 55665555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.5e-06 Score=82.08 Aligned_cols=195 Identities=17% Similarity=0.235 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HH
Q 001509 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA---LV 235 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~ 235 (1065)
.+..|+..|...++.|+|.+|...|+.+...+|.. ...+.+.++.++++.++++.|+..+++-+.+.|+++.+ ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999999877 35678889999999999999999999999999987644 55
Q ss_pred HHHHHHHHc-----cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHH
Q 001509 236 ALAVMDLQA-----NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN 310 (1065)
Q Consensus 236 ~la~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 310 (1065)
..|.+++.. .+......|+..|+..+...|++.-+-.....+-+ +... .+.--..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~-----------~~d~---------LA~~Em~ 172 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVK-----------LNDA---------LAGHEMA 172 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHH-----------HHHH---------HHHHHHH
Confidence 666665543 33455778899999999999987644332222211 1111 1122345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
+|+.|.+.|.+..|+..++.+++.++..+....++..+..+|..+|-.++|...-.-+-...|++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 66777777777777777777777666555666666777777777777776665544333334443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.7e-07 Score=95.83 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hh-----hhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHH
Q 001509 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YA-----DVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1065)
Q Consensus 42 ~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~-~~-----~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~ 115 (1065)
..-..|+.||+.|+|..|+..|++++..-..+. +. .....+..
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~------------------------------- 258 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA------------------------------- 258 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH-------------------------------
Confidence 445778999999999999999999754311000 00 00111223
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
++++++.+++..+.|..|+..+.++|..+|+|+.+++..|.++...|+|+.|+..|++++++.|++
T Consensus 259 --------------~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 --------------CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred --------------HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 344555555555555555555555555555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 001509 196 PGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 226 (1065)
..+...+..|..+...+... ...|.+++..
T Consensus 325 -ka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 325 -KAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555444443333 4455555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.6e-08 Score=77.10 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.+|..++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777777777777777777777777777777777776665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.6e-07 Score=95.10 Aligned_cols=111 Identities=16% Similarity=0.268 Sum_probs=84.5
Q ss_pred HHhHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC--c---
Q 001509 654 AANGAGVVLAEK-GQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--D--- 726 (1065)
Q Consensus 654 a~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~--- 726 (1065)
++..+|.+|... |+++.|+..|+++.+....... .....++..+|.++...|+|++|+..|+++...+...+ .
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 345678889888 9999999999999998754321 12346788999999999999999999999988643322 1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 727 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 727 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
...++..+.+++..|++..|...|.+....+|......
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 34567788899999999999999999999999664443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-07 Score=102.14 Aligned_cols=124 Identities=11% Similarity=0.058 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1065)
.+.+..|+.+|++++.++|+++.++..++.++.... +...+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 346779999999999999999999999888776542 345666666676664 7778889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
++++|...|++++.++|+ ...+..+|.++...|++++|+..|.+++.++|..+.
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999994 578999999999999999999999999999999875
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00013 Score=76.17 Aligned_cols=302 Identities=19% Similarity=0.117 Sum_probs=205.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 001509 167 GQACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1065)
..|.+....|+-..|.+.-.+.-++ ..+..+.+++.-+..-.-.|+++.|..-|+.++. +|... +..|-.+|+...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAq 165 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQ 165 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHH
Confidence 3455666677777887777777643 3344456667777777788888888888887764 44322 233333444433
Q ss_pred chHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001509 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1065)
Q Consensus 246 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1065)
..+..+.|..+..++....|.-+.++...-...+..|+++.|+++.+......-..+.. +-. ..|.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~--aeR------------~rAv 231 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV--AER------------SRAV 231 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh--HHH------------HHHH
Confidence 33347888888888888888887777777777777777777777776654332111100 000 0010
Q ss_pred HHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
- +...+... -.-+...|...-..++++.|+...+-..-+..+++.|+..++-.+++.+.+.
T Consensus 232 L------------------LtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 232 L------------------LTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred H------------------HHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 0 11111111 1234677888888899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001509 406 DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 485 (1065)
Q Consensus 406 ~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (1065)
.|... ++.+|....--+.++.-++++-.+..
T Consensus 293 ePHP~--------------------ia~lY~~ar~gdta~dRlkRa~~L~s----------------------------- 323 (531)
T COG3898 293 EPHPD--------------------IALLYVRARSGDTALDRLKRAKKLES----------------------------- 323 (531)
T ss_pred CCChH--------------------HHHHHHHhcCCCcHHHHHHHHHHHHh-----------------------------
Confidence 88654 34555555444556666666554211
Q ss_pred hhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 001509 486 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR-NNLQLSIELVNEALK 564 (1065)
Q Consensus 486 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g~~~~A~~~~~~al~ 564 (1065)
..|++....+..+..-...|++..|..--+.+....|. ..++..++.+-... |+-.++..++-+++.
T Consensus 324 -----------lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 -----------LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -----------cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 56778888888888888889999988888888888876 56777778876655 888888888888876
Q ss_pred H
Q 001509 565 V 565 (1065)
Q Consensus 565 ~ 565 (1065)
-
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-05 Score=75.49 Aligned_cols=234 Identities=11% Similarity=0.070 Sum_probs=160.0
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCChHHHHHhh
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN--GKYPNALSMLG 577 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 577 (1065)
......+.+.+.|..+|.+..-+.-.... ......+...++.+...-++.+.-+.-+.+.+... ..+......-+
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~---~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEG---KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccc---cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 46677778888888888876544333222 12224455556666555666665555555444332 23334555667
Q ss_pred hhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhH
Q 001509 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 657 (1065)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~ 657 (1065)
.++...|+++.|.........+ +..++ -..+ +.+. ..++-|.+.++++.+++-+- .+..
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~l----E~~Al--~VqI-~lk~------------~r~d~A~~~lk~mq~ided~--tLtQ 174 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENL----EAAAL--NVQI-LLKM------------HRFDLAEKELKKMQQIDEDA--TLTQ 174 (299)
T ss_pred HHhhcCCChHHHHHHHhccchH----HHHHH--HHHH-HHHH------------HHHHHHHHHHHHHHccchHH--HHHH
Confidence 7888899999999888863221 22222 2233 5555 77888888888888876553 3444
Q ss_pred HHHHHHh----cCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 001509 658 AGVVLAE----KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYL 733 (1065)
Q Consensus 658 la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l 733 (1065)
||..+.. .+.+..|.-+|+.+-+..+ ..+......+.|++.+|+|++|...++.+|.+ .+.++.++.++
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~-----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTP-----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccC-----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 5554443 3478899999999888665 46778888999999999999999999999988 57778899999
Q ss_pred HHHHHHhhcHHHHH-HHHHHHHHhCCCCcchH
Q 001509 734 ARTHYEAEQWQDCK-KSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 734 g~~~~~~g~~~~A~-~~~~kal~~~P~~~~~~ 764 (1065)
-.+-...|+..++. +.+.+....+|+.+.+.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 88888888887755 55677777888876654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=93.86 Aligned_cols=221 Identities=16% Similarity=0.090 Sum_probs=142.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 001509 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436 (1065)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~ 436 (1065)
++++|...|.++ |.+|...|++++|...|.++....-....... ....+...+.++.
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~---------Aa~~~~~Aa~~~k 86 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE---------AAKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH---------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHH---------HHHHHHHHHHHHH
Confidence 667776666664 55667777888888888777654311100000 0144556666665
Q ss_pred HcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHc-
Q 001509 437 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI- 515 (1065)
Q Consensus 437 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~- 515 (1065)
.. ++.+|+.+|++++......+ ....-..++..+|.+|...
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G-------------------------------------~~~~aA~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAG-------------------------------------RFSQAAKCLKELAEIYEEQL 128 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT--------------------------------------HHHHHHHHHHHHHHHCCTT
T ss_pred hh-CHHHHHHHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHHHHHc
Confidence 55 99999999999987422110 1122567888999999999
Q ss_pred CChHHHHHHHHHHHHHCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------hHHHHHhhhhhcc
Q 001509 516 HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNALSMLGDLELK 582 (1065)
Q Consensus 516 g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~ 582 (1065)
|+++.|+.+|++++..... ...++..+|.++...|+|.+|+..|+++....-++ ...+...+.+++.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 9999999999999975321 15588899999999999999999999998754221 1345667889999
Q ss_pred ccchHHHHHHHHHhhhcCCCCCh----HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCC
Q 001509 583 NDDWVKAKETFRAASDATDGKDS----YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 649 (1065)
Q Consensus 583 ~g~~~~A~~~~~~al~~~~~~d~----~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 649 (1065)
.|++..|...|++.....|.-.. ..+..|... | ..... ..+..|+..|..+-.++|
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A-~----~~~D~------e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA-Y----EEGDV------EAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH-H----HTT-C------CCHHHHCHHHTTSS---H
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH-H----HhCCH------HHHHHHHHHHcccCccHH
Confidence 99999999999999887654211 122222222 1 11111 567778888877666655
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.1e-07 Score=79.35 Aligned_cols=99 Identities=29% Similarity=0.486 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1065)
Q Consensus 85 ~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1065)
++..+|.++...|+.. +|+..+.+++...|.++.+++.+|.++...|+++.|+..|..++...|.+..+
T Consensus 2 ~~~~~a~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYD-----------EALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHH-----------HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 3566777777776655 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
+..+|.++...|++..|...+.+++...|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999988774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-05 Score=95.24 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=158.2
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-DRDN----VPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
...-|.+.+..+|++...|+.....+++.++.+.|...++++|.. ++.. ...|..+-.....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 355677778888888888888888888888888888888888853 3332 33455444445555666667778888
Q ss_pred HHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCC-
Q 001509 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY- 266 (1065)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~- 266 (1065)
|.+..... .++..+..+|...+.+++|.++|+.+++...+....|..++..+++.++ -+.|...+.+|++.-|.
T Consensus 1523 Acqycd~~--~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne---~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1523 ACQYCDAY--TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE---AEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHhcchH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH---HHHHHHHHHHHHhhcchh
Confidence 87765433 5677788888888888888888888888877777888888888888877 77788888888888887
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 267 -CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 267 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
+..+....|.+-|..|+.+.+..+|+..+... |...+.|..+...-...|+...+..+|++++.
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay---PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY---PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC---ccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 66677777777777777777777777776653 55666777777777777777777777777764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=92.69 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRD---------------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.-..|..+++.|+|..|...|++++..-+. -..+++++|.|+.++++|..|+..+.++|...|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345789999999999999999998765321 13467888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
.-++|..|.++..+|+++.|+..|+++++++|.|..+...|..+..+... ......+.|.+++..-+
T Consensus 291 -~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 -VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKLA 357 (397)
T ss_pred -hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Confidence 66688888888888888888888888888888888877777776655544 13334566666665443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=86.33 Aligned_cols=108 Identities=23% Similarity=0.362 Sum_probs=90.1
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001509 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1065)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1065)
.....++.+|.++...|++++|+..|.+++...+.++....+++++|.++...|++++|+..|++++.++|.....+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 35678899999999999999999999999976544444556899999999999999999999999999999999999999
Q ss_pred HHHHH-------HcCCHH-------HHHHHHHHHHHhCCCcH
Q 001509 383 GHIYV-------QLGQIE-------KAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 383 a~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 410 (1065)
|.++. ..|+++ +|+.+|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99988 777766 55566666677777654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.9e-08 Score=81.91 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
++|+.|+.+|++++..+|. +...++.+|.+++..|++++|+.++++ +..+|.++...+.+|.+++..|+|++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5688999999999999995 466788899999999999999999999 7888888899999999999999999999999
Q ss_pred HHH
Q 001509 186 KRA 188 (1065)
Q Consensus 186 ~~a 188 (1065)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0002 Score=75.35 Aligned_cols=224 Identities=27% Similarity=0.374 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~--~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1065)
..+..+...+.......+.. .......+..+...+.+..+...+...+. ..+.....+...+..+...+.+..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445555555555555542 45555566666666666666666666655 455555666666666666666666666
Q ss_pred HHHHHHHhCCCCchHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccchHhHHHHHHHHHH
Q 001509 184 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1065)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~ 259 (1065)
.+..++...+.. .......+. ++...|+++.|...|.+++...| .....+..++..+...++ +..++..+.+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHH
Confidence 666666655554 222333334 56666666666666666655444 223333333333333444 5555555555
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 001509 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1065)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1065)
++...+.. ....+..++..+...+.+..|+..+..++... +
T Consensus 193 ~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~ 233 (291)
T COG0457 193 ALKLNPDD------------------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELD---P 233 (291)
T ss_pred HHhhCccc------------------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC---c
Confidence 55555441 22334444444444444555555554444421 2
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1065)
.....+..++..+...+.+..+...+.+++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 12233344444444444455555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-07 Score=74.50 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=57.1
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 410 (1065)
+.+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999864
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0026 Score=71.35 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 001509 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-GIGLCRYKLGQLGKARQAFQR 222 (1065)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~-~la~~~~~~g~~~~A~~~~~~ 222 (1065)
.+.+...|...+...|.....|...|..-++.|....++.+|++++..-|-+ ...|. .++.+.-..|+.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4666777778888888888888888888889999999999999998888866 34333 345555566777888888888
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHccchHhHHHHHHHHHHHHHh
Q 001509 223 ALQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1065)
Q Consensus 223 al~~~p~~---~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 263 (1065)
|+.....+ ...|-.+......+.+ +..-...|.+.++.
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRilei 180 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEI 180 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhh
Confidence 88765543 3345555555544444 67777777777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0002 Score=75.27 Aligned_cols=226 Identities=30% Similarity=0.391 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHcCCHHHHH
Q 001509 142 GEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1065)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (1065)
+.+..+...+..++...+.. .......+..+...+.+..+...+...+. ..+.. ...+..++.++...+++..++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-AEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555555554442 44445555555555555555555555554 23333 344455555555555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 001509 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN-HFFFTGQHFLVEQLTETALA 296 (1065)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~ 296 (1065)
..+..++...+.. ......... ++...|++..+...+.+++.
T Consensus 116 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-------------------------------------DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-------------------------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555544444 333333333 45555555555555555543
Q ss_pred ccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
..+........+...+..+...+++..|+..+..++... +. ....+..++..+...+.+..|+..+..++...|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN---PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN 235 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC---cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCccc
Confidence 211012344555666666888999999999999999743 44 56778889999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 408 (1065)
...+..++..+...+.+..+...+.+++...|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 788888888888778899999999999999886
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-06 Score=86.32 Aligned_cols=110 Identities=23% Similarity=0.288 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHH
Q 001509 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1065)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1065)
.+..+.-++..|+|..|...|...++..+.++..+.++|+||.+++.+|+|+.|...|..+.+.++.+|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45556666667777777777777777777777777888888888888888888888888888877777777777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001509 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1065)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1065)
++..+|+.++|..+|+++++.+|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.6e-06 Score=76.94 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=75.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chHHHH
Q 001509 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1065)
Q Consensus 127 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1065)
.+..++..|...+..|+|..|+..|+.+....|.. ..+.+.++.+++..++|.+|+..+++.++++|.+ ...+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678899999999999999999999999988765 5788999999999999999999999999999988 355778
Q ss_pred HHHHHHHHcCC
Q 001509 202 GIGLCRYKLGQ 212 (1065)
Q Consensus 202 ~la~~~~~~g~ 212 (1065)
.+|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888887765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00035 Score=73.18 Aligned_cols=280 Identities=19% Similarity=0.141 Sum_probs=203.2
Q ss_pred HHHHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1065)
.|.++-.++.++-.. .+.+++.-++..+..|+++.|..-|+.++. +|. ....+.++-.-....|.++.|..+-..+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 566666555433332 345666678889999999999999998875 332 1222333333445679999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HHHHHHHHHH-HHccchHhHHHHHHHHHHHH
Q 001509 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL---DPENV---EALVALAVMD-LQANEAAGIRKGMEKMQRAF 261 (1065)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~---~a~~~la~~~-~~~~~~~~~~~A~~~~~~al 261 (1065)
....|.. ...+...-...+..|+++.|+...+..... .++-. .+-+.-+... .-..+ ...|......++
T Consensus 181 a~~Ap~l-~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad---p~~Ar~~A~~a~ 256 (531)
T COG3898 181 AEKAPQL-PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD---PASARDDALEAN 256 (531)
T ss_pred HhhccCC-chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHh
Confidence 9999999 444555566678899999999998876543 23211 1111111111 11222 678888899999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 001509 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1065)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1065)
++.|+....-..-+..++..|+..++-.+++.+.+..++. .++..|....--+.++.-++++-......|++
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--------DIALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 9999999999999999999999999999999998875432 23344444444445555566655544456888
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-GQIEKAQELLRKAAKI 405 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 405 (1065)
....+..+...+.-|++..|...-+.+....|. ..++..|+.+-... |+-.++..++-++++.
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 889999999999999999999999999999886 56677777777655 9999999999999874
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.5e-08 Score=98.61 Aligned_cols=239 Identities=13% Similarity=0.074 Sum_probs=159.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
+-..|+.|+.+|.|++|+.||.+.+..+|.|+..+.+.|.+|++.+.|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 34578888999999999999999999999888888889999999999998888888888888776 56678888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1065)
|+..+|...++.++++.|++.+....++.+..-... .-+.+.-|....+ .+-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~-----------~I~~KsT~G~~~A-----------------~Q~ 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRER-----------KIATKSTPGFTPA-----------------RQG 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh-----------hHHhhcCCCCCcc-----------------ccc
Confidence 889999999999999888876654444433221100 0011111111101 000
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1065)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1065)
..+++ ..-.-|..+...|.+..++.+|...+.... ........ +..+.+..++..++.-..+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~---~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATID---DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeeccccccC---ccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00111 012235667777788888877766654321 22222222 6677778888888888888877
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001509 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413 (1065)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 413 (1065)
..|.........+..-.-.|...++...++.++.+.|.+..+.
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~ 338 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPK 338 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccch
Confidence 7766555555555555556677788888888888888766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0069 Score=71.00 Aligned_cols=144 Identities=19% Similarity=0.099 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhh
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 580 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 580 (1065)
.+.+|..+|..-...|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+.+... .+.+-..|..+|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHH
Confidence 5678888888888888888888888765 6677888888888888888888888877766432 233333444455
Q ss_pred ccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHH
Q 001509 581 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660 (1065)
Q Consensus 581 ~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 660 (1065)
.+.++..+-.++.. .| ...-.-..|+- ++.. +.|+.|.-+|..+ .-+..|+.
T Consensus 1177 Akt~rl~elE~fi~-----gp--N~A~i~~vGdr-cf~~------------~~y~aAkl~y~~v--------SN~a~La~ 1228 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-----GP--NVANIQQVGDR-CFEE------------KMYEAAKLLYSNV--------SNFAKLAS 1228 (1666)
T ss_pred HHhchHHHHHHHhc-----CC--CchhHHHHhHH-Hhhh------------hhhHHHHHHHHHh--------hhHHHHHH
Confidence 55555544332221 12 22233345666 5555 8888888887544 44677888
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 001509 661 VLAEKGQFDVSKDLFTQV 678 (1065)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~ 678 (1065)
.+...|+|..|.+..+++
T Consensus 1229 TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 888889998888877765
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-06 Score=76.88 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=99.0
Q ss_pred chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHH
Q 001509 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 729 (1065)
Q Consensus 651 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 729 (1065)
.+..++.-|.-....|+|.+|+..|+.+....|.+.+ ...+.+.+|.+|+..|++..|+..+++.++++|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4556778888889999999999999999999997754 4689999999999999999999999999999888877 788
Q ss_pred HHHHHHHHHHhhc---------------HHHHHHHHHHHHHhCCCCcchH
Q 001509 730 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 730 ~~~lg~~~~~~g~---------------~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
++..|.+++.... ...|...|++++...|++..+.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999999876 7789999999999999986543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=80.69 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=97.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
..+.++.....+..|.-++..|++++|..+|+-+...+|.+ ...++++|.|+..+++|++|+..|..+..++++++...
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 33455567788999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH
Q 001509 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 235 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
+..|.+++..|+ ...|+..|..++. .|.+.
T Consensus 109 f~agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 109 FFTGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred chHHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 999999999999 9999999998887 45444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.4e-06 Score=91.24 Aligned_cols=119 Identities=14% Similarity=0.124 Sum_probs=85.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHH
Q 001509 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1065)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (1065)
..+...++++.|+.+|++..+.+|. +...+|.++...++..+|+.++.+++..+|.+ ...+...+..+...++++.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHH
Confidence 3344456777777777777776654 44556777777777777777777777777777 6666677777777777777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Q 001509 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1065)
Q Consensus 216 A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al 261 (1065)
|+...++++...|.+...|..|+.+|...|+ ++.|+..++.+-
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCc
Confidence 7777777777777777777777777777777 777777766543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0066 Score=68.22 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=132.1
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSM 575 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 575 (1065)
..+.....|......-...|+++...-.|++++--...+...|++.+......|+..-|...+..+.++. |..+.+...
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 3444566777777778899999999999999999999999999999999999999999999999988875 777888888
Q ss_pred hhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHH---HHHHHHHhhCCcch
Q 001509 576 LGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK---ELYTRVIVQHTSNL 652 (1065)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~---~~~~~~l~~~p~~~ 652 (1065)
.+.+--..|++..|..+++++.+..|. -..+-+.-.++ -... |..+.+. .++.....- ..+.
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~-e~r~------------~~~~~~~~~~~l~s~~~~~-~~~~ 436 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINW-ERRK------------GNLEDANYKNELYSSIYEG-KENN 436 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhH-HHHh------------cchhhhhHHHHHHHHhccc-ccCc
Confidence 888888899999999999999988754 22222222223 2222 5555555 233222221 1122
Q ss_pred H----HHhHHHHH-HHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHc
Q 001509 653 Y----AANGAGVV-LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704 (1065)
Q Consensus 653 ~----a~~~la~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~ 704 (1065)
. .+...+.. +.-.++.+.|..++.++.+..| .+-..|..+.++...+
T Consensus 437 ~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~-----~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 437 GILEKLYVKFARLRYKIREDADLARIILLEANDILP-----DCKVLYLELIRFELIQ 488 (577)
T ss_pred chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCC-----ccHHHHHHHHHHHHhC
Confidence 2 22223332 2345788888888888888876 5555666665555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0082 Score=67.76 Aligned_cols=225 Identities=19% Similarity=0.149 Sum_probs=124.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH------HHHh----CCCCHH-HHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQR------ALQL----DPENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~~~-a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
-..|.+|.+..++++|+++|.+ ++++ .|..+. .-...|.-+...|+ ++.|+..|-.+--
T Consensus 665 dkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q---~daainhfiea~~------- 734 (1636)
T KOG3616|consen 665 DKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ---LDAAINHFIEANC------- 734 (1636)
T ss_pred HhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh---HHHHHHHHHHhhh-------
Confidence 3445666666777777777654 2222 122111 11122333334444 6666666544321
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHH
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
+..-........+|.+|+.+++.+-.. ......|-.++.-|...|+|+-|..+|.++-. ...-.
T Consensus 735 -~~kaieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----------~~dai 798 (1636)
T KOG3616|consen 735 -LIKAIEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEADL-----------FKDAI 798 (1636)
T ss_pred -HHHHHHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhcch-----------hHHHH
Confidence 122233344456666666666554322 22334556677788888888888888866532 22334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHH------HHHH---hCCCcHHHHHHHHHc
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLR------KAAK---IDPRDAQARTLLKKA 419 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~------~al~---~~p~~~~a~~~l~~~ 419 (1065)
.+|-+.|++..|..+-+++.. |.. ...|...+.-+-..|+|.+|.++|- +++. ...-+.+...+..+.
T Consensus 799 ~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh
Confidence 667778888888777766543 222 3344445555555566555554442 1111 112222333444444
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
....-.++...+|.-+...|+...|...|-++-.
T Consensus 877 h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 877 HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 3444457788889999999999999988877643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=7e-06 Score=74.12 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
.+++++|+++-..|+.++|+.+|++++..+. ..+....++
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL----------------------------------------~~~~~~~a~ 41 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGL----------------------------------------SGADRRRAL 41 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------------------------------------CchHHHHHH
Confidence 4678889999999999999999999987432 233456788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAIAKARNNLQLSIELVNEALK 564 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 564 (1065)
+.+|.++..+|++++|+.+++..+..+|+ +......++.++...|++++|+.++-.++.
T Consensus 42 i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 42 IQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999988887 667777788888899999999888877665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.7e-06 Score=74.70 Aligned_cols=99 Identities=26% Similarity=0.261 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1065)
.+++.+|.++...|+.++|+.+|++++......+....+++.+|.++...|++++|+.++++.+..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567888889999999999999999998754344555678888999999999999999999999988888 77788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001509 383 GHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 383 a~~~~~~g~~~~A~~~~~~al~ 404 (1065)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999988877664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=72.58 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH----HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART----LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~----~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
...|...-.++.+...+++|..-+...-.++..+..... .-.+.|..+|+..-...+.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 455555566666666666666665554444322211000 0013355566666666677777888888777666554
Q ss_pred HcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 001509 452 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 531 (1065)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 531 (1065)
.. ....+...+......+..+..+++-+
T Consensus 149 ~~--------------------------------------------------~V~~ii~~~e~~~~~ESsv~lW~KRl-- 176 (366)
T KOG2796|consen 149 KT--------------------------------------------------VVSKILANLEQGLAEESSIRLWRKRL-- 176 (366)
T ss_pred HH--------------------------------------------------HHHHHHHHHHhccchhhHHHHHHHHH--
Confidence 32 11111222222233344455554432
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCC-----CCh
Q 001509 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-----KDS 605 (1065)
Q Consensus 532 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~d~ 605 (1065)
..+.+.++.++.-.|.|.-.+..++++++.+ |..+.....+|.+.++.|+.+.|..+|+.+-+.... ...
T Consensus 177 ----~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 177 ----GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred ----HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 3355566677777778888888888888877 566777778888888888888888888754432111 122
Q ss_pred HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Q 001509 606 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS 685 (1065)
Q Consensus 606 ~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 685 (1065)
....+.+.+ |.-+ +++..|...|.+++..+|.++.+.++.|.++.-.|+...|+..++.+.+..|+.
T Consensus 253 ~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 253 MVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 334445555 6666 899999999999999999999999999999999999999999999999999865
Q ss_pred CCCcchHHHHHHHHHH
Q 001509 686 VFVQMPDVWINLAHVY 701 (1065)
Q Consensus 686 ~~~~~~~~~~~lg~~~ 701 (1065)
.. +..+.+||-.+|
T Consensus 320 ~l--~es~~~nL~tmy 333 (366)
T KOG2796|consen 320 YL--HESVLFNLTTMY 333 (366)
T ss_pred ch--hhhHHHHHHHHH
Confidence 32 334555655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-06 Score=70.34 Aligned_cols=56 Identities=25% Similarity=0.390 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
..|++++|+..|++++..+|++..+++.+|.+++..|++++|..++.+++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444444444444444444444444444444444444444444444443
|
... |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.02 Score=67.44 Aligned_cols=255 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
.|.+....+-|++|...|++. .-+..+...+ .-..++.+.|..+..++ +.+.+|..+|.+..+.|..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCch
Confidence 355556666677777777653 1122222221 22345556665555443 1256778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293 (1065)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 293 (1065)
.+|+..|-++ +++..+.....+....|. |++-+.++..+.+.. ..+.+-..|..+|...++..+...+..
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~---~edLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGK---YEDLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHhc-
Confidence 8888777664 355566666666677776 777777776665432 222333444555555665555444331
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1065)
Q Consensus 294 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1065)
.|+. .-....|.-++..|.|+.|.-+|...-. |-.++..+..+|+|..|+..-+++
T Consensus 1191 -------gpN~-A~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1191 -------GPNV-ANIQQVGDRCFEEKMYEAAKLLYSNVSN-----------FAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred -------CCCc-hhHHHHhHHHhhhhhhHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 1222 2234567777777778777776655432 556777777888888887777765
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
++..+|...+..+...+.+.-|.-+=-.. .+.++-+-.+...|...|-|++-+.+++.++.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~i-------------------ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNI-------------------IVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhcCceE-------------------EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 34566777666666665554443221100 01123355667788888999998888888876
Q ss_pred c
Q 001509 454 D 454 (1065)
Q Consensus 454 ~ 454 (1065)
+
T Consensus 1308 L 1308 (1666)
T KOG0985|consen 1308 L 1308 (1666)
T ss_pred h
Confidence 3
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.3e-06 Score=76.68 Aligned_cols=98 Identities=18% Similarity=0.287 Sum_probs=47.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
-|.-++..|+|++|...|..+|...|..+ ..+.+.|.++++++.+..|+..+.+++.++|.. ..++...+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHH
Confidence 35555555555555555555555554331 233444444444555555555555555555544 333444444444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 209 KLGQLGKARQAFQRALQLDPENVE 232 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1065)
++..|+.|+..|.++++.+|....
T Consensus 180 k~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHH
Confidence 444455555555555554444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-05 Score=87.08 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHh
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1065)
.++...++++.|+.+|++....+|+. ...++.++...++-.+|+..+.+++...|.+...+...+.+++..++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--- 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--- 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Confidence 34444567777777777777777653 44567777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
++.|+...+++....|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777666644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-06 Score=88.82 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=145.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
|+|.|++|+.+|.+++..+|.++..+.+++.+|+....|..|...|..++.++.....+|...+.+-...|...+|...+
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDC 188 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 45556699999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 265 (1065)
+.+|.+.|++ ..+.-.++. .....++ +-+.+.-|....+........- ...|
T Consensus 189 E~vL~LEP~~-~ELkK~~a~----i~Sl~E~----~I~~KsT~G~~~A~Q~~~Q~l~-------------------~K~~ 240 (536)
T KOG4648|consen 189 ETVLALEPKN-IELKKSLAR----INSLRER----KIATKSTPGFTPARQGMIQILP-------------------IKKP 240 (536)
T ss_pred HHHHhhCccc-HHHHHHHHH----hcchHhh----hHHhhcCCCCCccccchhhhcc-------------------ccCc
Confidence 9999999998 443332222 2221111 1122223332222222222110 0111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhh
Q 001509 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1065)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1065)
|..++..|.+..++..+..-+...+.+. ..-.. +..|...-+++.++.-..+++. ..+......
T Consensus 241 ---------G~~Fsk~~~~~~~i~~~~~~~A~~~~~~---~L~~~-~~~~~KI~~~~~~~~~~~~~~~---~~~s~~~~~ 304 (536)
T KOG4648|consen 241 ---------GYKFSKKAMRSVPVVDVVSPRATIDDSN---QLRIS-DEDIDKIFNSNCGIIEEVKKTN---PKPTPMPDT 304 (536)
T ss_pred ---------chhhhhhhccccceeEeeccccccCccc---cCccc-HHHHHHHhhcchhHHHHHHhcC---CCCCcCccc
Confidence 2233333444433333332222211110 01111 4555666667777666655543 334444444
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (1065)
.+.+..-.-.|...++...++.++.+.|.+-..
T Consensus 305 s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 305 SGPPKAETIAKTSKEVKPTKQTAVKVAPAVETP 337 (536)
T ss_pred CCCchhHHHHhhhhhcCcchhheeeeccccccc
Confidence 555555566677888888888888888876433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.027 Score=68.02 Aligned_cols=479 Identities=14% Similarity=0.078 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHHHcCCH
Q 001509 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (1065)
+..|+.+++-+++..+- ...+.+.+|.+++ ...+++.|...+.+++.....+. ....+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44566666666642221 2345666777766 57778888888887776554311 1234556778888888877
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh-hhh-H-HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 001509 322 EKAGLYYMASVKEINKPHEFIFP-YYG-L-GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1065)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~~-~~~-l-a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1065)
. |+..+.+.+......+..... .+. + ...+...+++..|+..++.+.... +.++. +....+.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 999999988765432222111 111 2 333334489999999999988764 34433 333346666677878
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHc---ccc----hhhhccc
Q 001509 393 EKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI--GVIHFEKGEFESAHQSFKDALG---DGI----WLTLLDS 463 (1065)
Q Consensus 393 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~---~~~----~~~~~~~ 463 (1065)
+.+++.++++........ +..........+|..+ -.++...|++..+...++..-. ... |.. ..+
T Consensus 196 ~d~~~~l~~~~~~~~~~q-----~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~-~~~ 269 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQ-----LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPS-WDE 269 (608)
T ss_pred hhHHHHHHHHHHHHhhcc-----cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCC-cCC
Confidence 888888887754321110 0000000001223222 2345667887777766655432 111 000 000
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhcc-cC--CCCcC-CCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----
Q 001509 464 KTKTYVIDASASMLQFKDMQLFHRFE-ND--GNHVE-LPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKY----- 532 (1065)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~--~~~~~-~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 532 (1065)
.....+.. ..... .. ...+. .+.. ..-+++--|.+....+..+.|.+++.+++..-
T Consensus 270 -d~~i~l~~------------~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~ 336 (608)
T PF10345_consen 270 -DGSIPLNI------------GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI 336 (608)
T ss_pred -CeeEEeec------------ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc
Confidence 00000000 00000 00 00000 1111 22233334555566677778888888877521
Q ss_pred --CCh-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CC------ChHHHHHhhhhhcc
Q 001509 533 --QDY-------------------VDAYLRLAAIAKARNNLQLSIELVNEALKVN---GK------YPNALSMLGDLELK 582 (1065)
Q Consensus 533 --p~~-------------------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~ 582 (1065)
+.. ....+..+.+..-.+++..|...+..+.... |. .+.+++..|..+..
T Consensus 337 ~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~ 416 (608)
T PF10345_consen 337 KSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS 416 (608)
T ss_pred cCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH
Confidence 100 1134555667778899999999988877653 22 36788999999999
Q ss_pred ccchHHHHHHHH--------HhhhcCCCCChHHHH--hhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc-c
Q 001509 583 NDDWVKAKETFR--------AASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-N 651 (1065)
Q Consensus 583 ~g~~~~A~~~~~--------~al~~~~~~d~~~~~--~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~ 651 (1065)
.|+.+.|..+|. .+....+..+.+.+. ++..+ +... ..... ...+........+......|+ +
T Consensus 417 ~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I-~~~~---~~~~~--~~~~~~~l~~~i~p~~~~~~~~~ 490 (608)
T PF10345_consen 417 TGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAII-LQYE---SSRDD--SESELNELLEQIEPLCSNSPNSY 490 (608)
T ss_pred cCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHH-hHhh---cccch--hhhHHHHHHHhcCccccCCccHH
Confidence 999999999998 333344443433322 22222 2221 11000 000122333333333333332 2
Q ss_pred hHHHhHH-HHHHH--hcCCcHHHHHHHHHHHHHh-cC-CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 652 LYAANGA-GVVLA--EKGQFDVSKDLFTQVQEAA-SG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 652 ~~a~~~l-a~~~~--~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
...++.+ ..++. ..-...++...+...++.. .. +...-..-++..+|+.++ .|+..+.......++......++
T Consensus 491 ~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d 569 (608)
T PF10345_consen 491 NRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSD 569 (608)
T ss_pred HHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhh
Confidence 2222222 22222 2223457777777777665 21 111112234556677777 78888888887777765444433
Q ss_pred --HHHHH-----HHHHHHHHhhcHHHHHHHHHHHHH
Q 001509 727 --AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 755 (1065)
Q Consensus 727 --~~~~~-----~lg~~~~~~g~~~~A~~~~~kal~ 755 (1065)
..+|. .+...+...|+.++|.....+.-.
T Consensus 570 ~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 570 YSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 23332 345557778999999888776644
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.5e-06 Score=69.57 Aligned_cols=65 Identities=34% Similarity=0.565 Sum_probs=36.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
+..|+|++|+..|++++..+|++ ..+++.+|.|++..|++++|...+.+++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555555555555555555555 445555555555555555555555555555555555444444
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-06 Score=68.34 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=30.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001509 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1065)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1065)
+++..++|+.|+.++++++..+|++ ...++..|.|+..+|++..|+..|+++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4444455555555555555555544 3444445555555555555555555555555544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.014 Score=62.98 Aligned_cols=121 Identities=11% Similarity=0.083 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 180 (1065)
|.+++.+|...|.++......++ ..+-++....+-.++.+.-...+...-+..|..+...+..|...++.|.|..
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 35566699999999876655443 3444555666677888887777777778889888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCc------------h--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 181 SLEFYKRALQVHPSCP------------G--AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1065)
Q Consensus 181 Al~~~~~al~~~p~~~------------~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1065)
|++.+..-...-.... . ..-...+.|+...|.+.+++..+.+.+..
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9998876554411110 1 11234689999999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.1e-06 Score=69.39 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=55.9
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC----c-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Q 001509 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----D-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 757 (1065)
Q Consensus 689 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~ 757 (1065)
+...++.++|.+|..+|++++|+.+|++++....... . ..++..+|.++...|++++|+.++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999997642222 1 6788899999999999999999999998763
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.5e-05 Score=73.90 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
+-.-|.-+|..|+|.+|..-|..+|.+.|..+ ..++.+.|.|+++++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33446667778888888888888888777763 33455677778888888888888888888888877777777777
Q ss_pred HHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 241 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
|.+... +++|+..|.+++..+|....+.-..+.+--.
T Consensus 178 yek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 777766 7888888888888888777666665554433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00013 Score=68.41 Aligned_cols=140 Identities=18% Similarity=0.193 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1065)
.+.+|.+.+ .+.|. ....+.+|..+...|++.+|...|++++. ..-.++..++++|...+..+++..|...++.
T Consensus 75 ~~Rea~~~~----~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 75 HLREATEEL----AIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred HHHHHHHHH----hhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 344454444 44453 44678899999999999999999999986 3557789999999999999999999999999
Q ss_pred HHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHH
Q 001509 188 ALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 188 al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
+.+.+|.. .+...+.+|..+..+|.+.+|...|+.++...| .+.+....+..+..+|+ ..++-..+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr---~~ea~aq~ 216 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGR---LREANAQY 216 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcc---hhHHHHHH
Confidence 99999876 456788899999999999999999999999888 46777788888888886 44444333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.9e-06 Score=67.11 Aligned_cols=61 Identities=33% Similarity=0.462 Sum_probs=53.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
..+|+..++++.|+.+++.++..+|.++..++.+|.+++..|++.+|+..|++++...|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 4678888899999999999999999988889999999999999999999999999888887
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00083 Score=65.64 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=121.3
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCChHHHHHhhhhhccccchH
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGDLELKNDDWV 587 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~ 587 (1065)
-.+++++|.++|.++ +.+|....++..|-..|-++-... .+....|.-.+.+|.+ .+..
T Consensus 26 g~~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPE 90 (288)
T ss_pred CCcchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChH
Confidence 345778888777766 333444444444444444443321 0112334444555433 4777
Q ss_pred HHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHh-cC
Q 001509 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KG 666 (1065)
Q Consensus 588 ~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g 666 (1065)
+|..++++++++ |... |++..|.... ..||.+|.. ..
T Consensus 91 eAv~cL~~aieI----------------yt~~------------Grf~~aAk~~--------------~~iaEiyEsdl~ 128 (288)
T KOG1586|consen 91 EAVNCLEKAIEI----------------YTDM------------GRFTMAAKHH--------------IEIAEIYESDLQ 128 (288)
T ss_pred HHHHHHHHHHHH----------------HHhh------------hHHHHHHhhh--------------hhHHHHHhhhHH
Confidence 777777776654 4444 5555444432 345666653 36
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHh
Q 001509 667 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEA 740 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~lg~~~~~~ 740 (1065)
+++.|+..|+++-+-..+.... ..-.+++..+..-...++|.+|+..|+++....-+++- ...++..|.|++-.
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 7888888888888776542111 12235666677777889999999999998875333321 44566778888888
Q ss_pred hcHHHHHHHHHHHHHhCCCCcchH
Q 001509 741 EQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 741 g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
.+.-.+...+++-..++|.....+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccH
Confidence 999999999999999999876554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00013 Score=64.12 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHH
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~ 207 (1065)
+-..|..+...|+.+.|++.|.+++...|.++.+|.+.|..+.-+|+..+|+..+++++.+.... ...++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34568888999999999999999999999999999999999999999999999999999986443 234678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 001509 208 YKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
..+|+.+.|...|+.+-++...
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCH
Confidence 9999999999999999887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00057 Score=64.20 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHh
Q 001509 552 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA 631 (1065)
Q Consensus 552 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~ 631 (1065)
++....-..+.+.+.|.. .-.+.|+......|++.+|...|.+++.-.-..|...++.+++. .+..
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~------------ 137 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI------------ 137 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh------------
Confidence 333333344444444432 23344566666666666666666666554333455555555555 4444
Q ss_pred hhHHHHHHHHHHHHhhCCc--chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHH
Q 001509 632 THLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 709 (1065)
+++..|...++++.+.+|. .+.....+|.+|...|.+..|...|+.++...| .+......+..+.++|+..+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchhH
Confidence 5555555566555555554 344445555555556666666666666655554 34455555555555555555
Q ss_pred HHHHHHHHH
Q 001509 710 AMKMYQNCL 718 (1065)
Q Consensus 710 A~~~~~~al 718 (1065)
|...|....
T Consensus 212 a~aq~~~v~ 220 (251)
T COG4700 212 ANAQYVAVV 220 (251)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0012 Score=65.65 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCch
Q 001509 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEI 71 (1065)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~ 71 (1065)
..+.+|...-.++.+...+++|.--|+..-..+.
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~ 100 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQ 100 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCC
Confidence 3466787777788888888888877776654443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-06 Score=68.76 Aligned_cols=74 Identities=24% Similarity=0.433 Sum_probs=61.0
Q ss_pred CCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 001509 648 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 721 (1065)
Q Consensus 648 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 721 (1065)
+|.-..+++++|.+|...|++++|+..|+++++... ++..+....++.++|.+|..+|++++|+.+|+++++.+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 355667899999999999999999999999998742 22222346789999999999999999999999999874
|
... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.073 Score=64.29 Aligned_cols=414 Identities=17% Similarity=0.124 Sum_probs=242.8
Q ss_pred HHHHHHHHHhccCCC-CCchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCCchh----hhhhHHHHHHHcCCHHH
Q 001509 287 VEQLTETALAVTNHG-PTKSHSYYNLARSYH-SKGDYEKAGLYYMASVKEINKPHEFIF----PYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 287 A~~~~~~al~~~~~~-~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~la~~~~~~g~~~~ 360 (1065)
|++.++.++...+.. ...+.+++.+|.+++ ...+++.|..++.+++..... +.... +.+.++.++.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 566777776433322 245677889999887 789999999999999875543 44332 3455788888888777
Q ss_pred HHHHHHHHHHhCCC---cH-H-HHHHH-HHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHcCCCCCHHHHHHHH
Q 001509 361 ALTNFEKVLEIYPD---NC-E-TLKAL-GHIYVQLGQIEKAQELLRKAAKID--PRDAQARTLLKKAGEEVPIEVLNNIG 432 (1065)
Q Consensus 361 A~~~~~~~l~~~p~---~~-~-~~~~l-a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~~~~~~~~la 432 (1065)
|...+.+.++.... .. . ++..+ ...+...+++..|+..++...... +.++.+.. -+....+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v-----------~~~l~~~ 186 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV-----------LASLSEA 186 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH-----------HHHHHHH
Confidence 99999999886443 21 1 12222 333333479999999999988765 34443322 1334446
Q ss_pred HHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHH--
Q 001509 433 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR-- 510 (1065)
Q Consensus 433 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~-- 510 (1065)
.++...+....+++.++.+....... .. ... ..+....++..+-.
T Consensus 187 ~l~l~~~~~~d~~~~l~~~~~~~~~~-q~------------------------------~~~--~~~~qL~~~~lll~l~ 233 (608)
T PF10345_consen 187 LLHLRRGSPDDVLELLQRAIAQARSL-QL------------------------------DPS--VHIPQLKALFLLLDLC 233 (608)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhhc-cc------------------------------CCC--CCcHHHHHHHHHHHHH
Confidence 77778888888999888886522100 00 000 11223334444333
Q ss_pred HHHHcCChHHHHHHHHHHH---H---HCC---C---------------------h------------HHHHHHHHHHHHH
Q 001509 511 LLEQIHDTVAASVLYRLIL---F---KYQ---D---------------------Y------------VDAYLRLAAIAKA 548 (1065)
Q Consensus 511 ~~~~~g~~~~A~~~~~~al---~---~~p---~---------------------~------------~~a~~~la~~~~~ 548 (1065)
++...|++..+...++.+- . ..| . . .-+|+.-|.....
T Consensus 234 ~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~ 313 (608)
T PF10345_consen 234 CSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLY 313 (608)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhh
Confidence 3455677666665544432 2 111 0 0 1134444555666
Q ss_pred cCCHHHHHHHHHHHHHHCCC-------C-------------------hHHHHHhhhhhccccchHHHHHHHHHhhhcCC-
Q 001509 549 RNNLQLSIELVNEALKVNGK-------Y-------------------PNALSMLGDLELKNDDWVKAKETFRAASDATD- 601 (1065)
Q Consensus 549 ~g~~~~A~~~~~~al~~~p~-------~-------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~- 601 (1065)
.+..+.|.+++.+++..-.+ . ..+....+++.+-.++|..|......+.....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 77777888888887764211 0 01344677777888999999998887776321
Q ss_pred --C-----CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHH--------HHHhhCCc---chHHHhHHHHHHH
Q 001509 602 --G-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT--------RVIVQHTS---NLYAANGAGVVLA 663 (1065)
Q Consensus 602 --~-----~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~--------~~l~~~p~---~~~a~~~la~~~~ 663 (1065)
. ..+..++..|-. +... |+.+.|...|. .+....+. .+.+..++..++.
T Consensus 394 ~~~~~~~~~~~~~~yL~gl~-~q~~------------g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 394 SPSKLYESLYPLLHYLLGLY-YQST------------GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred CccchhhhhhHHHHHHHHHH-HHHc------------CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 1 234455555554 5555 99999999998 44455555 3556677778877
Q ss_pred hcCCcHH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHh-cCCCc----HHHHHH
Q 001509 664 EKGQFDV----SKDLFTQVQEAASGSVFVQMPDVWINLAHVYF--AQGNFALAMKMYQNCLRKF-YYNTD----AQILLY 732 (1065)
Q Consensus 664 ~~g~~~~----A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~-~~~~~----~~~~~~ 732 (1065)
..+.-.. +..++..+-.....+........+..+-.++. ..-...++...+..+++.. ....+ .-++..
T Consensus 461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 6665443 44444443332221111111112222222221 2234458888888888876 22222 445667
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 733 LARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 733 lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
++..++ .|+..+.......+++..+..
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~ 567 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKS 567 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhh
Confidence 777777 788777666665566655443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=77.58 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=85.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
++..+++.+|.+...+..-+..+..+|+..+|..++..++-..|.. -.+++.+|.++.+.|...+|--++..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3444556666655555555555566788888888888888776654 35678888888888888888777777776666
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
.. ...++.+|.++..+|.+......|..+.+.+|....+.
T Consensus 281 ~~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FF-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cc-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 65 44477788888888888888888888888888755443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.042 Score=59.19 Aligned_cols=288 Identities=12% Similarity=0.072 Sum_probs=158.1
Q ss_pred cCCCCCCCHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhc
Q 001509 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG 97 (1065)
Q Consensus 18 ~~~~l~~d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g 97 (1065)
--+.+|.|...+.+-++..|.+...|+++...|-.+|.+++-..+++++..+-+ ++ .-+|.....|
T Consensus 20 ~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~------------~~aw~ly~s~ 85 (660)
T COG5107 20 PSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IM------------EHAWRLYMSG 85 (660)
T ss_pred cccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--cc------------cHHHHHHhcc
Confidence 458899999999999999999999999999999999999999999999977632 11 2355555566
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc------C----CHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK------G----EVEQASSAFKIVLEADRDNVPALLG 167 (1065)
Q Consensus 98 ~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~------g----~~~~A~~~~~~al~~~p~~~~a~~~ 167 (1065)
.+. ..+|.....+|.+++...- +.+.|...- -|.+. | .+-+|-++.-.++-.+|.....|-.
T Consensus 86 ELA------~~df~svE~lf~rCL~k~l-~ldLW~lYl-~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~e 157 (660)
T COG5107 86 ELA------RKDFRSVESLFGRCLKKSL-NLDLWMLYL-EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDE 157 (660)
T ss_pred hhh------hhhHHHHHHHHHHHHhhhc-cHhHHHHHH-HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHH
Confidence 555 4467777777777775543 244444322 22222 1 1233333333333356776666666
Q ss_pred HHHHHHH---------cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---------HcC----CHHHHHHHHHHHHH
Q 001509 168 QACVEFN---------RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---------KLG----QLGKARQAFQRALQ 225 (1065)
Q Consensus 168 la~~~~~---------~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~---------~~g----~~~~A~~~~~~al~ 225 (1065)
.+..+.. +.+.+.-...|.+++..--.+....|...-..-. -.| -|-.|...|+....
T Consensus 158 y~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~n 237 (660)
T COG5107 158 YGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQN 237 (660)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 5554432 3344556667777776544442222221111111 111 24455566655544
Q ss_pred h-------CCCCHH-----------HHHHHHHHHHHccc---hHhHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001509 226 L-------DPENVE-----------ALVALAVMDLQANE---AAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1065)
Q Consensus 226 ~-------~p~~~~-----------a~~~la~~~~~~~~---~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1065)
+ +|.+.. -|.+........+- .+-.. .---.+++++...|-.+.+|+.....+...++
T Consensus 238 lt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd 317 (660)
T COG5107 238 LTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISD 317 (660)
T ss_pred HhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccH
Confidence 3 222111 12222222221110 00011 22234555666666666666666666666666
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
-+.|+.....++... +.....++.+|...++-+.-..+|+++..
T Consensus 318 ~q~al~tv~rg~~~s------psL~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 318 KQKALKTVERGIEMS------PSLTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHhcccCC------CchheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 666666665554332 23445555555555555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3e-05 Score=84.56 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=49.0
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
.+|+++.+|+++|.+|+..|+|++|+..|++++.++|++..+ |+++|++|..+|++++|+.+|++++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777777776643 777777777777777777777777765
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.042 Score=59.16 Aligned_cols=147 Identities=10% Similarity=0.008 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
-+..-++-+|++...|+.+...+-.+|.+++-.+.+.+...-.|--+.+|...-..-...++|.....+|.++|...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999998888888888777777777889999999999998866553
Q ss_pred chHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc------hHhHHHHHHHHHHH
Q 001509 196 PGAIRLGIGLCRYKLG-----Q----LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1065)
Q Consensus 196 ~~~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~A~~~~~~a 260 (1065)
+.|...-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+..... ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33332222111221 1 2233333333344577777777777766544322 12355556666776
Q ss_pred HHhC
Q 001509 261 FEIY 264 (1065)
Q Consensus 261 l~~~ 264 (1065)
+...
T Consensus 188 l~tP 191 (660)
T COG5107 188 LQTP 191 (660)
T ss_pred HcCc
Confidence 6544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.05 Score=58.93 Aligned_cols=145 Identities=7% Similarity=-0.041 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch--hhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001509 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1065)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1065)
.+..-|-++..++++.+|...|.++.+.....|... .++.++....+-.++.+.-...+...-+..|..+......|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344567788889999999999988887554433322 233333344445566666666666666778888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 001509 385 IYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK-KAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 385 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~-~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
+.++.+.+.+|+..+..-...-...... .+. +.....+. -.-+..+.+++..|.+.++...+++.+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~--~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESP--WLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccc--hhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999998887554431111000 000 00001111 2224457788999999999999998875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.062 Score=59.07 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 001509 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRAL 224 (1065)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 224 (1065)
.-...|+.++...+.++..|........+.+.+.+--.+|.+++..+|++ +.+|+..|.-.+.-+. ++.|...|.+++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34556777777777778888777777777777888888888888888888 6667776666666554 788888888888
Q ss_pred HhCCCCHHHHHHHHHHHH
Q 001509 225 QLDPENVEALVALAVMDL 242 (1065)
Q Consensus 225 ~~~p~~~~a~~~la~~~~ 242 (1065)
+.+|+++..|...-.+.+
T Consensus 168 R~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred hcCCCChHHHHHHHHHHH
Confidence 888888877665554443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=69.45 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 174 (1065)
.|+.|.+.++.....+|.+++.++..|.+++...+ +++|+.-|+.+|.++|+...+++.+|.++..
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 46677777777777777777777777766665533 2334444444444555555555555544443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.9e-05 Score=82.28 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=65.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1065)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1065)
.+|+++.+++++|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999999999999832 469999999999999999999999999973
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.043 Score=63.40 Aligned_cols=168 Identities=20% Similarity=0.154 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh------hhhHHHHHH----HcCCHHHHHHHHHHHHHhCCCcH
Q 001509 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQL----KLGDFRSALTNFEKVLEIYPDNC 376 (1065)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~la~~~~----~~g~~~~A~~~~~~~l~~~p~~~ 376 (1065)
....+..+.--.|+-+.++..+..+.+..+ -..+.+ |+....... .......|..++......+|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~--i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSEN--IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH
Confidence 444444555556888888888888775211 111111 111111111 24567889999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccc
Q 001509 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 456 (1065)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 456 (1065)
-.++..|.++...|+.++|+..|++++.......+.. .-+++.+++++..+++|++|..+|....+.+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~-----------~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLH-----------HLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHH-----------HHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999885443333222 24688999999999999999999999987543
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCCh-------HHHHHHHHHHH
Q 001509 457 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT-------VAASVLYRLIL 529 (1065)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al 529 (1065)
| ......|..|.++...|+. ++|..++.++-
T Consensus 337 W------------------------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 337 W------------------------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred c------------------------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3667788889999999988 66666666553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.018 Score=66.45 Aligned_cols=194 Identities=16% Similarity=0.103 Sum_probs=131.8
Q ss_pred HHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHH
Q 001509 556 IELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 635 (1065)
Q Consensus 556 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~ 635 (1065)
.-.|+-++.+-|. .+...+..+ --.|+-+.++..+..+.+...-..+.+.+.|-. |+.....--.... ......
T Consensus 177 ~G~f~L~lSlLPp--~~~kll~~v-GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~--y~~~~~~~~~~~~-~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSLLPP--KVLKLLSFV-GFSGDRELGLRLLWEASKSENIRSPLAALVLLW--YHLVVPSFLGIDG-EDVPLE 250 (468)
T ss_pred HHHHHHHHHhCCH--HHHHHHhhc-CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHH--HHHHHHHHcCCcc-cCCCHH
Confidence 3345555555552 222222222 334899999999999877443334443332222 3322211111000 227788
Q ss_pred HHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 636 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 715 (1065)
Q Consensus 636 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 715 (1065)
.|..++.......|+....++..|.++...|+.++|+..|++++.....-. .-..-+++.+|+++.-+++|.+|...|.
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-QLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-hHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 999999999999999999999999999999999999999998875332100 0123468899999999999999999999
Q ss_pred HHHHHhcCCCc-HHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHhCC
Q 001509 716 NCLRKFYYNTD-AQILLYLARTHYEAEQW-------QDCKKSLLRAIHLAP 758 (1065)
Q Consensus 716 ~al~~~~~~~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~kal~~~P 758 (1065)
.+.+. +.-. .-..|..|.++...|+. ++|...|.++-.+..
T Consensus 330 ~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 330 RLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99875 2222 55566678889999998 778888877766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00051 Score=60.39 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 734 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~lg 734 (1065)
.-|..+.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+.++|+.-+.++++..+.... -.++...|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 346667777888888888888888776 56778888888888888888888888888877544332 55666777
Q ss_pred HHHHHhhcHHHHHHHHHHHHHhCC
Q 001509 735 RTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 735 ~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
.+|...|+-+.|+.-|..+-++..
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCC
Confidence 777788888888888877777653
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0051 Score=67.94 Aligned_cols=118 Identities=14% Similarity=0.013 Sum_probs=89.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 150 ~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+....++..|.+...+..-+..+..+|+..+|+.++..++-..|.. ...+++.+|.++.+.|...+|--++..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3344555666665555555555666799999999999988876654 445678899999999999999888888888777
Q ss_pred CCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHH
Q 001509 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1065)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 270 (1065)
.....++.++.++...++ +...+..|..+.+..|.....
T Consensus 281 ~~t~n~y~l~~i~aml~~---~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGE---YNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred cccccceeHHHHHHHHhh---hhhhhhhhhhhhccCcchhHH
Confidence 766668888888888888 778888888888877765433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=66.67 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC-
Q 001509 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ- 212 (1065)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~- 212 (1065)
|+.|.+.++.....+|.++.+++..|.++..+.+ +++|+.-|+.++.++|+. ..+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhh
Confidence 6789999999999999999999999988877633 678999999999999999 7889999999987764
Q ss_pred ----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 213 ----------LGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 213 ----------~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
|++|..+|++++..+|++......|...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8899999999999999998887777655
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00064 Score=72.91 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
+|+.......+.+..+.|...|.++.+..+.....|...|.+.+. .++...|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 455555666666666667777776664444455666666666555 344444777777777766666 555666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCH
Q 001509 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 268 (1065)
..|+.+.|..+|++++..-|... ..|.....+....|+ ++....+..++.+..|...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 66777777777777666555433 456666666666666 6666666667766666644
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0083 Score=71.01 Aligned_cols=279 Identities=22% Similarity=0.212 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHc
Q 001509 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----GDFRSALTNFEKVLEI-----YPDNCETLKALGHIYVQL 389 (1065)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~ 389 (1065)
....|..+|+.+.+ ..+..+.+.+|.+|..- .+.+.|+.+|..+... .-..+.+.+.+|.+|.+.
T Consensus 227 ~~~~a~~~~~~~a~-----~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK-----LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQG 301 (552)
T ss_pred hhhHHHHHHHHHHh-----hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcC
Confidence 35667777777765 44556677777777654 5788888888888761 112456788889998885
Q ss_pred C-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcccchhhhc
Q 001509 390 G-----QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLL 461 (1065)
Q Consensus 390 g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~ 461 (1065)
. ++..|+.+|.++......+ ..+.+|.++.... ++..|..+|..|...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~-----------------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G------ 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPD-----------------AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG------ 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC------
Confidence 3 6788999999888776543 4567787777655 5788999999987643
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHHHCCChHH
Q 001509 462 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI----HDTVAASVLYRLILFKYQDYVD 537 (1065)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~ 537 (1065)
...+.+.++.+|..- -+...|..+|.++.... .+.
T Consensus 359 ---------------------------------------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~ 397 (552)
T KOG1550|consen 359 ---------------------------------------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPS 397 (552)
T ss_pred ---------------------------------------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chh
Confidence 667788888887653 37789999999998877 344
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCh----HHHHHhhhhhcccc----chHHHHHHHHHhhhcCCCCChHHH
Q 001509 538 AYLRLAAIAKAR-NNLQLSIELVNEALKVNGKYP----NALSMLGDLELKND----DWVKAKETFRAASDATDGKDSYAT 608 (1065)
Q Consensus 538 a~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~d~~~~ 608 (1065)
+...++.++..- +.+..+.-.+.......-..+ .........+.... +...+...+.++.. ..+..+.
T Consensus 398 A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~g~~~a~ 474 (552)
T KOG1550|consen 398 AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA---QGNADAI 474 (552)
T ss_pred hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh---ccCHHHH
Confidence 444444444332 666666555554444332211 11111111122221 34455555555433 3466777
Q ss_pred HhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhc-C--CcHHHHHHHHHHHHHh
Q 001509 609 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-G--QFDVSKDLFTQVQEAA 682 (1065)
Q Consensus 609 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~-g--~~~~A~~~~~~~~~~~ 682 (1065)
+.||.+ |+..... . .+++.|...|..+.... ..+.+++|.++..- | .+..|..++.++.+..
T Consensus 475 ~~lgd~-y~~g~g~-~-------~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 475 LKLGDY-YYYGLGT-G-------RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred hhhcce-eeecCCC-C-------CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 888888 6665222 1 56888888888887777 77888888888742 1 2678888888877655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0036 Score=64.43 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=131.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhc-CCCCChHHHH--hhHHHHH
Q 001509 540 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATL--SLGNWNY 616 (1065)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~d~~~~~--~lg~~~y 616 (1065)
..-+.+....|++.+|-..+.+++.-.|.+..++...-.+++.+|+...-...+++++.. .+....++++ .++-. .
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L 185 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-L 185 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-H
Confidence 334556778899999999999999999999999999999999999999999999999876 3333333332 12211 3
Q ss_pred HHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHH
Q 001509 617 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 696 (1065)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 696 (1065)
... |.|.+|.+.-.++++++|.+.++...++.++...|++.++.+...+--..-..+.. -...-|..
T Consensus 186 ~E~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m-lasHNyWH 252 (491)
T KOG2610|consen 186 EEC------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM-LASHNYWH 252 (491)
T ss_pred HHh------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH-HHhhhhHH
Confidence 333 99999999999999999999999999999999999999999988775443221100 11224556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 697 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 697 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
.+.++...+.|+.|+++|..-+-.-....+
T Consensus 253 ~Al~~iE~aeye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 253 TALFHIEGAEYEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHhhccc
Confidence 677888889999999999876543223344
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.013 Score=69.41 Aligned_cols=283 Identities=16% Similarity=0.125 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG-- 176 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-- 176 (1065)
....|..+|+.+... .+..+.+.+|.+++.- .+.+.|+.+|..+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345788888887654 4677778888887754 5899999999999771 1125668889999998853
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cchHh
Q 001509 177 ---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAG 249 (1065)
Q Consensus 177 ---~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~ 249 (1065)
++..|+.+|.++......+ ..+.+|.|+..-. ++..|..+|..+... .+..+.+.++.++..- |-..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 6788999999998876544 4688899988766 678999999998764 4788899999887654 33345
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHHH----cCCHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAVTNHGPTKSHSYYNLAR-SYHS----KGDYEK 323 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~-~~~~----~g~~~~ 323 (1065)
...|..++.++.... ++.+...++.++... +.+..+...+..........+....+++..-. .... ..+...
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 899999999999888 555555555554443 66666665555444332111111111111111 1111 125566
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHH
Q 001509 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQ 396 (1065)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~ 396 (1065)
+...+.++.. .....+...+|.+|..- .++..|...|..+.... ....+++|.++..- ..+..|.
T Consensus 458 ~~~~~~~a~~-----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~ 529 (552)
T KOG1550|consen 458 AFSLYSRAAA-----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAK 529 (552)
T ss_pred HHHHHHHHHh-----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHH
Confidence 7777776654 45556677788777664 36899999999998876 88899999888754 1278888
Q ss_pred HHHHHHHHhCCC
Q 001509 397 ELLRKAAKIDPR 408 (1065)
Q Consensus 397 ~~~~~al~~~p~ 408 (1065)
.+|.++...+..
T Consensus 530 ~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 530 RYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHhcCch
Confidence 899888876654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.14 Score=56.33 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQ 190 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~ 190 (1065)
.-..+|..+....+.++..|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|..+|.++|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 557788899988899999999999888888889999999999999999999999999998888876 8999999999999
Q ss_pred hCCCCchHHH
Q 001509 191 VHPSCPGAIR 200 (1065)
Q Consensus 191 ~~p~~~~~~~ 200 (1065)
.+|++ +.+|
T Consensus 169 ~npds-p~Lw 177 (568)
T KOG2396|consen 169 FNPDS-PKLW 177 (568)
T ss_pred cCCCC-hHHH
Confidence 99999 4444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.03 Score=55.17 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH----
Q 001509 503 TVLFNLARLLEQI-HDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN---- 571 (1065)
Q Consensus 503 ~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 571 (1065)
..+..+|.+|..- .++++|+.+|+.+-.-.... -.+++..+......++|..|+..|+++....-+++.
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 3455677777765 88999999999887644322 347788888888999999999999998887665553
Q ss_pred ---HHHHhhhhhccccchHHHHHHHHHhhhcCCC
Q 001509 572 ---ALSMLGDLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 572 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
.++.-|.|++-..+.-.+...+++..+..|.
T Consensus 194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3445677777778877777777777777765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=69.72 Aligned_cols=128 Identities=12% Similarity=0.186 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHH
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 710 (1065)
+..+.|..+|.++++..+.....|...|.+-.. .++...|..+|+.+++..| .++.+|......+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 679999999999997666678888888988666 5666779999999999997 7789999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 711 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 711 ~~~~~~al~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..+.
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 999999998754443 356888888888889999999999999999999865544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=69.79 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
.++|..|+.+|.+++.++|..+..|..++.++++..+++.+...+.+++.++|+.+.+.+.+|.+......|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45677899999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q 001509 187 RALQVH 192 (1065)
Q Consensus 187 ~al~~~ 192 (1065)
++..+.
T Consensus 103 ra~sl~ 108 (284)
T KOG4642|consen 103 RAYSLL 108 (284)
T ss_pred HHHHHH
Confidence 886553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0033 Score=68.95 Aligned_cols=165 Identities=15% Similarity=0.161 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------CC--
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------DN-- 161 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------------------~~-- 161 (1065)
+.+...-++.-.+|++++|+.+.+|+.++.-. .....+|..+|+++++... .+
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 44555778888999999999999999887532 2345677777777665311 01
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAV 239 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~ 239 (1065)
+.+...+|.+..+.|+.++|++.++.+++.+|.. ...++..+..|+..++.|.++...+.+.=.. -|.+....+.-+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3345778999999999999999999999988763 4668899999999999999999999885433 2555555555554
Q ss_pred HHHHc-cc------------hHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 240 MDLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1065)
Q Consensus 240 ~~~~~-~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1065)
+..+. ++ ...-..|++.+.++++.||..|..+..
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 43331 11 111345778899999999988865543
|
The molecular function of this protein is uncertain. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=70.99 Aligned_cols=93 Identities=30% Similarity=0.465 Sum_probs=69.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Q 001509 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1065)
..|..++....|..|+..|.+++.++|.. +..+.+.+.|++++.+++.+.....++++++|+.+.+++.+|...+....
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~-~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV-ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc-chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34556666777777777777777777777 56677777777777777777777777777777777777777777777766
Q ss_pred hHhHHHHHHHHHHHHHh
Q 001509 247 AAGIRKGMEKMQRAFEI 263 (1065)
Q Consensus 247 ~~~~~~A~~~~~~al~~ 263 (1065)
+.+|+..+.+++.+
T Consensus 94 ---~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 ---YDEAIKVLQRAYSL 107 (284)
T ss_pred ---ccHHHHHHHHHHHH
Confidence 77777777777554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.016 Score=57.37 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=24.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNC------ETLKALGHIYVQLGQIEKAQELLRKAA 403 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al 403 (1065)
.+|...++|++|..++.++.+-+.++. .++-..+.+......+.++..+|+++.
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs 98 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS 98 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444445555555555555554333221 223333444444444555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=52.09 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1065)
|.+|+.+|..|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788888888888888888888888888888888877764
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0052 Score=67.41 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=123.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHH
Q 001509 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 620 (1065)
Q Consensus 541 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~ 620 (1065)
.+..-..+..++..-++..+++++++|+.+.+|..|+.- ...-..+|..+|+++++.... .++.. ...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~-- 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFL-- 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhh--
Confidence 334445667788888888999999999998888887763 233467788888887764321 11111 000
Q ss_pred hhhhcChhHHhhhHHHHHHHHHHHHhhCCc--chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 001509 621 RNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 698 (1065)
Q Consensus 621 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg 698 (1065)
....-+-..+...+. .+++...+|.+.-+.|+.++|++.|..+++..|.. ++..++.+|.
T Consensus 241 ---------------~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLi 302 (539)
T PF04184_consen 241 ---------------QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLI 302 (539)
T ss_pred ---------------hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHH
Confidence 000001111111222 24566788999999999999999999999887743 4677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-hc---------------HHHHHHHHHHHHHhCCCCcc
Q 001509 699 HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQ---------------WQDCKKSLLRAIHLAPSNYT 762 (1065)
Q Consensus 699 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~-g~---------------~~~A~~~~~kal~~~P~~~~ 762 (1065)
.++..++.|.++...+.+- .....+..+.+.|..+....+. ++ -..|.+.+.+|++.+|.-+.
T Consensus 303 e~LLelq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 303 EALLELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 9999999999998887663 2111233455555444433221 11 13477899999999997654
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0098 Score=61.37 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=123.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCCCchhhhhhHHHHHH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQL 353 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~ 353 (1065)
+.+.+-.|++.+|....++.+... |.+..++..--.+++..|+...-...+.+++...+ ..|-+..+.-.++..+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~---PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY---PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC---chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 445566788888877788877653 56666677777788888888888888888876422 33444555556788899
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
..|-|++|.+...++++++|.+..+.+.++.++...|++.++.++..+.-..-.... ++ ..--|...+.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~----ml-------asHNyWH~Al 255 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW----ML-------ASHNYWHTAL 255 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh----HH-------HhhhhHHHHH
Confidence 999999999999999999999999999999999999999999998876543222111 00 0123556788
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 001509 434 IHFEKGEFESAHQSFKDAL 452 (1065)
Q Consensus 434 ~~~~~g~~~~A~~~~~~al 452 (1065)
+++..+.|+.|+.+|..-+
T Consensus 256 ~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 256 FHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhcccchhHHHHHHHHHH
Confidence 8999999999999998765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.022 Score=56.48 Aligned_cols=209 Identities=14% Similarity=0.129 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHH
Q 001509 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----PDNCE 377 (1065)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~ 377 (1065)
..|..-+.+|...++|++|..++.++.+-...+.. ...++-..+.+...+..+.++..+|+++...+ |+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 34445556666666777777766666643322111 12234445555666667777777777776542 33333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccch
Q 001509 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457 (1065)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 457 (1065)
.-...+--....-++++|+++|++++.+...+...+... +.+...+.++.+...+.+|-..+.+-......
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~---------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF---------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH---------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 333333334456688999999999888755444332222 56777788888989998888877765431100
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHH----CC
Q 001509 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQ 533 (1065)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p 533 (1065)
....+.....+.....++....+|..|...|+..-++ .|
T Consensus 183 -------------------------------------~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 183 -------------------------------------CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred -------------------------------------HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 0022223344555556666677888888888876542 23
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 534 DYVDAYLRLAAIAKARNNLQLSIELVNE 561 (1065)
Q Consensus 534 ~~~~a~~~la~~~~~~g~~~~A~~~~~~ 561 (1065)
+...+.-+|... +..|+.++..+++..
T Consensus 226 ed~r~lenLL~a-yd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 226 EDSRSLENLLTA-YDEGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHHHHHHHH-hccCCHHHHHHHHcC
Confidence 444455554433 456777766665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.014 Score=63.47 Aligned_cols=180 Identities=15% Similarity=0.114 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCChHHHHHhhhhhcc---ccchHHHHHHHHHhhhcCCCCChHHH
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYAT 608 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~d~~~~ 608 (1065)
++....+-..|....+|+.-+.+.+.+-.+ -++.+.+.+.+|.++.+ .|+.++|+..+..++......++.++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445566666777788888877777776665 35566777778888777 78888888888887776666777788
Q ss_pred HhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHH-HHh-----
Q 001509 609 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ-EAA----- 682 (1065)
Q Consensus 609 ~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~-~~~----- 682 (1065)
..+|.+ |-......... .....++|+..|.++...+| +.+.-.+++.++...|.-.+...-+.++. ...
T Consensus 221 gL~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 221 GLLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888 76663321110 11558999999999999995 45556667777777775433332222222 100
Q ss_pred cC-CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 683 SG-SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 683 p~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
.+ .....+-+.+-.++.+..-.|++++|+..++++++.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 00 000122333344555555555555555555555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.15 Score=54.71 Aligned_cols=171 Identities=13% Similarity=0.031 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 001509 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312 (1065)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 312 (1065)
.+..++.+++..+......+|...++.+-...|+.+.++..--.+....++.+.+...+.+++.................
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 46667777777777677778888888887778887777766666666678888888888888876543333333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-cCCCCCchhhhhhHHHHHHHcC--C------HHHHHHHHHHHHHh--CCCcH-----
Q 001509 313 RSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYYGLGQVQLKLG--D------FRSALTNFEKVLEI--YPDNC----- 376 (1065)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g--~------~~~A~~~~~~~l~~--~p~~~----- 376 (1065)
..+... ....|...+...+.. +...++......-+..++...+ + .+....++..+... .|-..
T Consensus 166 ~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 166 KQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 333332 334566666555542 2222221111111222222222 1 22222333322211 22222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 377 --ETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 377 --~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
..+-..|.-.++.++|..|..+|+-++.
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2334457778889999999999997663
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00031 Score=51.05 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 346677777777777777777777777777777777776664
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00025 Score=77.20 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+...|+.|+..|.+++.++|+.+..+-.++.+++..+++..|+.-+.++++.+|....+++..|.+....+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 45667788888888888888888777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCchHHHHHHHHH
Q 001509 186 KRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~ 206 (1065)
+......|+. +.+...+..|
T Consensus 96 ~~~~~l~Pnd-~~~~r~~~Ec 115 (476)
T KOG0376|consen 96 EKVKKLAPND-PDATRKIDEC 115 (476)
T ss_pred HHhhhcCcCc-HHHHHHHHHH
Confidence 8888888877 4444444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.33 E-value=1.2 Score=58.61 Aligned_cols=329 Identities=12% Similarity=0.039 Sum_probs=186.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHH-HHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001509 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1065)
Q Consensus 45 ~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~ 123 (1065)
.+|.+-++.|.|..|+..+++-...+ ...+. ...+..|-.+|...+..+ .-...... ...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-------k~~~~~e~l~fllq~lY~~i~dpD-----------gV~Gv~~~-r~a 1448 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-------KEKETEEALYFLLQNLYGSIHDPD-----------GVEGVSAR-RFA 1448 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-------chhHHHHHHHHHHHHHHHhcCCcc-----------hhhhHHHH-hhc
Confidence 67888888888999998888841111 11122 223344444777666655 22222221 122
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1065)
+| .+..........|++..|..+|++++..+|+....+.+.-...+..|.+...+...+-.....++........-
T Consensus 1449 ~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~ 1524 (2382)
T KOG0890|consen 1449 DP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLG 1524 (2382)
T ss_pred Cc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHH
Confidence 33 45566677778899999999999999999998888888888889999999988877766655555533333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchH--hHHHHHHHHHHHHHh-------CCCCHHHHHHH
Q 001509 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA--GIRKGMEKMQRAFEI-------YPYCAMALNYL 274 (1065)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~--~~~~A~~~~~~al~~-------~p~~~~~~~~l 274 (1065)
-.+.|.+++++.-..+.. ..+-.+..+.. +|.+.+...... ...+.++..+..+-. .......+..+
T Consensus 1525 ~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1525 VEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred HHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 344578888877665544 22222333321 454444433211 112233322221110 00001111111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----CCCCchhhhhhH
Q 001509 275 ANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPHEFIFPYYGL 348 (1065)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~l 348 (1065)
..++.... -....+......+. .......|-+....-....+..+-+-.+++++-... .......+|+..
T Consensus 1601 ~kLH~l~e----l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1601 MKLHLLLE----LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHHH----HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 11111100 00011111111111 111222222222221222224444444555443321 234567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001509 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1065)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 406 (1065)
|++....|+++.|...+-.+.+.. -+.+....|..+...|+...|+.++++.+..+
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999998888765 57889999999999999999999999999754
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.53 Score=54.33 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhcCCC---chhhhhh-hhHHHHHHHHHHHHHHHH
Q 001509 21 QLPRDASDILDILKAEQAPL--DLWLIIAREYFKQGKVEQFRQILEEGSSP---EIDEYYA-DVRYERIAILNALGVYYT 94 (1065)
Q Consensus 21 ~l~~d~~~~~~~L~~e~~~~--~~~~~~a~~y~~~g~~~~A~~~l~~~~~~---~~~~~~~-~~~~~~~~~l~~La~~y~ 94 (1065)
++.++...+..+...+..+- -+-+....+||..|.|++|+..--.+-.. +....|. ......++.+...+.-.+
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Confidence 33445555555555554442 23367789999999999999987666321 1111111 111122222222221111
Q ss_pred HhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHhC--CCCHHHHHHHHHH
Q 001509 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV-LEAD--RDNVPALLGQACV 171 (1065)
Q Consensus 95 ~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~--p~~~~a~~~la~~ 171 (1065)
..-. .+..--.+-..++++++...-.+...+..+|..+-. ..+..++.+ ++.+ +++...++.+...
T Consensus 118 ~~~~------~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s 186 (929)
T KOG2062|consen 118 KNPE------QKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLIS 186 (929)
T ss_pred cCcc------ccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHH
Confidence 1100 000001123444555555554455555555554432 123344443 2222 2344455555555
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1065)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1065)
......|. .+.+..+++..-+.+..-++.+..|+..+.+.+.+...+++.++
T Consensus 187 ~v~~~efR--~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 187 LVNNREFR--NKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHhhHHHH--HHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 55533332 23344444443222222367889999999999999999999988
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.31 Score=57.86 Aligned_cols=239 Identities=15% Similarity=0.094 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh-
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP- 570 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 570 (1065)
.+......+......+++.+|..++.++...-|. .....-..+.+....|+++.|.++.+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4555666677777888999999888887764443 134455567788899999999999999999877553
Q ss_pred ----HHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHH-----hhHHHHHHHHHhhhhcChhHHhhh--HHHHHH
Q 001509 571 ----NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-----SLGNWNYFAALRNEKRAPKLEATH--LEKAKE 639 (1065)
Q Consensus 571 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~-----~lg~~~y~~~~~~~~~~~~~~~~~--~~~A~~ 639 (1065)
.++..+|.+..-.|++.+|..+...+.+.....+.+.+. .-+.+ .... |. +.....
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~ 560 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEK 560 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHH
Confidence 467788888899999999999998888765444444322 22222 2222 42 222222
Q ss_pred HH----HHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCCcchH-HHHHHHHHHHHcCCHHHHHHH
Q 001509 640 LY----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPD-VWINLAHVYFAQGNFALAMKM 713 (1065)
Q Consensus 640 ~~----~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~ 713 (1065)
.| .+-+...|...+.....+.++...-+++.+..-....+..... ...+-++. +++.|+.+++..|++++|...
T Consensus 561 ~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~ 640 (894)
T COG2909 561 AFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQ 640 (894)
T ss_pred HHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 22 3344456666666666666665444477766666665554432 11112222 335899999999999999999
Q ss_pred HHHHHHHhcCCC---c--HHHHHHHHHHHHHhhcHHHHHHHHHH
Q 001509 714 YQNCLRKFYYNT---D--AQILLYLARTHYEAEQWQDCKKSLLR 752 (1065)
Q Consensus 714 ~~~al~~~~~~~---~--~~~~~~lg~~~~~~g~~~~A~~~~~k 752 (1065)
+..+......+. + ..+..-....+...|++..|...+.+
T Consensus 641 l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 641 LDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999887765543 1 22222333445568999999888876
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.073 Score=53.49 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=146.7
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1065)
.|+.+-..++..+|.+-.+|..+-.++-..+ +..+-+.++..++..+|.|...|...-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776554 5788899999999999999999999988999999988 8899999999
Q ss_pred HhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c--chHhHHHHHHHHHHHHHhCCC
Q 001509 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-N--EAAGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~--~~~~~~~A~~~~~~al~~~p~ 266 (1065)
..+..+ -.+|...-.|+...+.++.-+.+...+++.+-.|-.+|...-.+.... | .....+.-+.+....+...|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988888 667888888888889999999999999999888877776544333221 1 112356677888899999999
Q ss_pred CHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH
Q 001509 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1065)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 295 (1065)
|..+|+.|..++.. .| .+..+..+....+
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999988875 44 2344444444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.3 Score=55.63 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
+++|.+.|-.+-..+ .-..++...|+|-.+.+++...-.. ..+...-.++..+|..+.....++.|.++|.
T Consensus 750 feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765432211 2234566677777777766543211 1223456789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1065)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 401 (1065)
.... .-++..+++...+|++- +.+...-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 7753 23456777777777653 344445677888888999999999999999888755
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.069 Score=60.05 Aligned_cols=125 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC----
Q 001509 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKP---- 338 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~---- 338 (1065)
......+..++.+....|.++.|...+..+....... ...+.+.+..+..+...|+..+|+..+...+. .....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 3455677788888888888888888888877643222 22567778888888888888888888877776 22111
Q ss_pred --------------------------CCchhhhhhHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001509 339 --------------------------HEFIFPYYGLGQVQLKL------GDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1065)
Q Consensus 339 --------------------------~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1065)
.....+++.+|...... +..+.++..|..++..+|....+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 11123455566666666 7888899999999999999888999888877
Q ss_pred HHc
Q 001509 387 VQL 389 (1065)
Q Consensus 387 ~~~ 389 (1065)
...
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.15 Score=54.75 Aligned_cols=237 Identities=14% Similarity=0.112 Sum_probs=139.2
Q ss_pred HHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHHHHc
Q 001509 436 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 515 (1065)
Q Consensus 436 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~ 515 (1065)
...|+++.|..++.++-.... .... ........++|+.|......
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~---~~~~--------------------------------~~~~~La~~~yn~G~~l~~~ 48 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN---SLDP--------------------------------DMAEELARVCYNIGKSLLSK 48 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh---cCCc--------------------------------HHHHHHHHHHHHHHHHHHHc
Confidence 568999999999999865321 0000 01112567899999999999
Q ss_pred C-ChHHHHHHHHHHHHHC----------CCh----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHCCCChHHHHHhh
Q 001509 516 H-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLG 577 (1065)
Q Consensus 516 g-~~~~A~~~~~~al~~~----------p~~----~~a~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~ 577 (1065)
+ +++.|..++++++..- |+. ..++..++.++...+.++ .|..+++.+-...|+.+.++...-
T Consensus 49 ~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l 128 (278)
T PF08631_consen 49 KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKL 128 (278)
T ss_pred CCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 9 9999999999998762 111 346778888888877654 456666666667788888887767
Q ss_pred hhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC--Ccch-HH
Q 001509 578 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH--TSNL-YA 654 (1065)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~-~a 654 (1065)
.+..+.++.+.+.+.+.+++...+-.+...-..+..+.-+.. .....|...+...+... |... +.
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~------------~~~~~a~~~ld~~l~~r~~~~~~~~~ 196 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE------------KSPELAAFCLDYLLLNRFKSSEDQWL 196 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh------------hCcHHHHHHHHHHHHHHhCCChhHHH
Confidence 776778999999999999988655333332222332211111 34456666666666542 3221 11
Q ss_pred -HhHHHHHHHhc--CCcHHH--HHHHHHHHH---HhcCCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 655 -ANGAGVVLAEK--GQFDVS--KDLFTQVQE---AASGSVFVQ-----MPDVWINLAHVYFAQGNFALAMKMYQNCLR 719 (1065)
Q Consensus 655 -~~~la~~~~~~--g~~~~A--~~~~~~~~~---~~p~~~~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 719 (1065)
..-+..++... ++.... ++.+..++. ......... ....+.+.|...++.++|..|+.+|+-++.
T Consensus 197 e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 197 EKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 11112222222 222222 223322222 111111101 112344667777777888888888877664
|
It is also involved in sporulation []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0027 Score=62.55 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDN----------VPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1065)
.++...|+-++..|+|.+|...|..++.. .|.. .+.+++++.|++..|+|-+++.....+|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 56777899999999999999998887632 3433 35567778888888888888888888888
Q ss_pred hCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001509 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1065)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1065)
..|.+ ..+++..|.+....=+..+|...|.++++++|.-.
T Consensus 259 ~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 259 HHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred cCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 88888 66678888888888888888888888888887543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.67 Score=52.98 Aligned_cols=239 Identities=13% Similarity=0.045 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 001509 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341 (1065)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 341 (1065)
+|..|..|+.....+-.++.|...|-+.-...... .....--...+.+-.--|.|++|.+.|-.+-.. +
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr-----D- 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-----D- 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----h-
Confidence 67788888887777777766666665443221100 000001122344444557777777777554320 1
Q ss_pred hhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHc
Q 001509 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419 (1065)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 419 (1065)
.-..++.+.|++-....+++..-.-.. .-..++..+|..+..+..+++|.++|...-..
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------------- 825 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------------- 825 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------------
Confidence 112345556666655555543221111 11457777777777777777777777654321
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCC
Q 001509 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 499 (1065)
Q Consensus 420 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 499 (1065)
-++..++++...|++-..+.. .-|
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~-----------------------------------------------~Lp 849 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLAR-----------------------------------------------TLP 849 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHH-----------------------------------------------hcC
Confidence 223444555444443322222 234
Q ss_pred chhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 500 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 500 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
.+...+-.+|..+...|.-++|.+.|-+. ..|.- ........+++.+|.++.++.- -|.-.......+.-
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~--s~pka------Av~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaq 919 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR--SLPKA------AVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQ 919 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc--cCcHH------HHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 46667777888888888888888776543 12221 1122344556666666554421 12222222223333
Q ss_pred hccccchHHHHHHHHHh
Q 001509 580 ELKNDDWVKAKETFRAA 596 (1065)
Q Consensus 580 ~~~~g~~~~A~~~~~~a 596 (1065)
++..++..+|++.++++
T Consensus 920 ll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHhhcchHHHHHHhhhc
Confidence 44556666666666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.042 Score=56.70 Aligned_cols=151 Identities=18% Similarity=0.068 Sum_probs=86.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
...-+..+.-....|++..|...|..++...|.+..+.+.++.++...|+.+.|..++...-.................+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455666777777888888888888888888887888888888888888877777665532222222111000011222
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcC
Q 001509 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTG 282 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g 282 (1065)
.+....... ..+++.+..+|++..+.+.++..+...|+ .+.|+..+-..+..+- .+..+...+..++...|
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 222222221 23344455567777777777777777666 6667666666665543 23344444444444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.18 E-value=1.2 Score=58.69 Aligned_cols=122 Identities=14% Similarity=0.137 Sum_probs=89.1
Q ss_pred chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-cC------
Q 001509 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-YY------ 723 (1065)
Q Consensus 651 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------ 723 (1065)
-...|...|.+--..|.++.|...+-.+.+.. -+.++...|..+...|+-..|+..++..+... ++
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 45678888888888999999998888887765 37899999999999999999999999999653 22
Q ss_pred --CCc------HHHHHHHHHHHHHhhcHH--HHHHHHHHHHHhCCCCcchHHHHHHHhhHHHHHHH
Q 001509 724 --NTD------AQILLYLARTHYEAEQWQ--DCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTL 779 (1065)
Q Consensus 724 --~~~------~~~~~~lg~~~~~~g~~~--~A~~~~~kal~~~P~~~~~~~nla~~~~~~~~~~l 779 (1065)
|.. ..+.+.++.-....|++. +-+++|+.+..+.|....-+|.+|..+.++-....
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~ 1807 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYK 1807 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhh
Confidence 011 122333333333445432 35688999999999888888999976666655433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00032 Score=47.33 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001509 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1065)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~ 148 (1065)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.32 Score=54.63 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=111.5
Q ss_pred CCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhcCC--
Q 001509 648 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-KFYYN-- 724 (1065)
Q Consensus 648 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~-- 724 (1065)
.......+..++.+..+.|+++.|...+.++....+.... ..+.+.+..+.++...|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3346678899999999999999999999999886532211 2678999999999999999999999999887 22211
Q ss_pred ---------------------C-c-------HHHHHHHHHHHHHh------hcHHHHHHHHHHHHHhCCCCcchHHHHHH
Q 001509 725 ---------------------T-D-------AQILLYLARTHYEA------EQWQDCKKSLLRAIHLAPSNYTLRFDAGV 769 (1065)
Q Consensus 725 ---------------------~-~-------~~~~~~lg~~~~~~------g~~~~A~~~~~kal~~~P~~~~~~~nla~ 769 (1065)
. . +.++..+|.-.... +..+++...|..++++.|+....++++|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 1 45556666666666 77788899999999999999999999998
Q ss_pred HhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Q 001509 770 AMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 808 (1065)
Q Consensus 770 ~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~ 808 (1065)
.+............. ... .....-+..|+..|-.-..
T Consensus 301 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ai~~y~~al~ 337 (352)
T PF02259_consen 301 FNDKLLESDPREKEE-SSQ-EDRSEYLEQAIEGYLKALS 337 (352)
T ss_pred HHHHHHHhhhhcccc-cch-hHHHHHHHHHHHHHHHHHh
Confidence 765554422211111 111 2234456667776644433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00035 Score=47.18 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHhhCCcchHHHhHHHHHHHhcCCcHHHH
Q 001509 641 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672 (1065)
Q Consensus 641 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 672 (1065)
|+++++++|+|+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666654
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.56 Score=58.04 Aligned_cols=186 Identities=8% Similarity=-0.046 Sum_probs=95.5
Q ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChH--------HHHHhhhhhcc
Q 001509 516 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYPN--------ALSMLGDLELK 582 (1065)
Q Consensus 516 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~--------~~~~l~~~~~~ 582 (1065)
|..---..+++.+....| ..+....-.+....|+++-+.......-+.. |.+.. .+..-..+...
T Consensus 670 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (932)
T PRK13184 670 GFTPFLPELFQRAWDLRD--YRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSN 747 (932)
T ss_pred cCchhhHHHHHHHhhccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHc
Confidence 444444556666655443 2666777777888898887766655543211 22221 11111222234
Q ss_pred ccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHH
Q 001509 583 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVL 662 (1065)
Q Consensus 583 ~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~ 662 (1065)
...++++.+.+... ++.....+-++ +...+-.... ...+-.+++.+.+.....-..........++|
T Consensus 748 ~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (932)
T PRK13184 748 KEDYEKAFKHLDNT-------DPTLILYAFDL-FAIQALLDEE-----GESIIQLLQLIYDYVSEEERHDHLLVYEIQAH 814 (932)
T ss_pred cccHHHHHhhhhhC-------CHHHHHHHHHH-HHHHHHHhcc-----chHHHHHHHHHHhccCChhhhhhhhHHHHHHH
Confidence 44566666544421 11111112222 2222111100 02222333333322222222344455567778
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 663 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 719 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 719 (1065)
....+++.|-.++...-...-. .+...+++..|..+...++-+-|...|.-|.+
T Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 815 LWNRDLKKAYKLLNRYPLDLLL---DEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHhccHHHHHHHHHhCChhhhc---cccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 8888999998888553322211 14456778888888888888889999888874
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00071 Score=73.73 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCC
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1065)
..+..++..+.|+.|+.+|.++|.++|+++..+-..+.+++..++|..|+..+.++++.+|.. ...|+..|.++..++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHHH
Confidence 456677788899999999999999999999999999999999999999999999999999988 6778889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001509 213 LGKARQAFQRALQLDPENVEALVALAVMDL 242 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1065)
+.+|...|+....+.|+.+.+...+..+..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999887766665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.051 Score=56.10 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHH
Q 001509 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 615 (1065)
Q Consensus 536 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~ 615 (1065)
.+.-+.-+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-..........+ .+.+.
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l--~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL--QAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH--HHHHH
Confidence 3344455666778899999999999999999999999999999999999999999888864332222111111 11110
Q ss_pred HHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHH
Q 001509 616 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 695 (1065)
Q Consensus 616 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 695 (1065)
+...+ .... -...+.+.+..+|+|..+.+.++..+...|+.+.|++.+-.++..+.+. .+..+.-
T Consensus 212 ll~qa-----------a~~~-~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk 276 (304)
T COG3118 212 LLEQA-----------AATP-EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARK 276 (304)
T ss_pred HHHHH-----------hcCC-CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHH
Confidence 11110 0000 1234566677899999999999999999999999999998888876543 4455665
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 001509 696 NLAHVYFAQGNFALAMKMYQ 715 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~~~~ 715 (1065)
.+-.++...|.-+.+...|+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 277 TLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHhcCCCCHHHHHHH
Confidence 66666555554443443333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.11 E-value=1 Score=53.61 Aligned_cols=278 Identities=17% Similarity=0.043 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--CCchhhh
Q 001509 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP--HEFIFPY 345 (1065)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~ 345 (1065)
...+..-+..+...|...+|+...-.+-.. ..-+......+.-++..++..--. ..++.+|.+ -..+...
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~----~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDP----EMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTPRLV 418 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCH----HHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCchHH
Confidence 556666666666777777766654433110 111122222333344444433222 222222100 1122334
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001509 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416 (1065)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 416 (1065)
+..+.......++.+|..++.++...-|. .....-..|.+....|+++.|..+.+.++..-|.+.....+
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~- 497 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI- 497 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh-
Confidence 45677778889999999888887764332 13455567888889999999999999999987776543222
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcC
Q 001509 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 496 (1065)
Q Consensus 417 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 496 (1065)
.++..+|.+..-.|++.+|..+...+....... +
T Consensus 498 ---------~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------------------------~ 531 (894)
T COG2909 498 ---------VALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------------------------D 531 (894)
T ss_pred ---------hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------------------------c
Confidence 467888999999999999999999887632100 0
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHH--HHHHHH----HHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----N 566 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~--~~~~~a----l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~ 566 (1065)
.......+.+..+.++..+|+...|. ..+... +...|-..-.....+.++...-+++.+..-....+.. .
T Consensus 532 ~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~ 611 (894)
T COG2909 532 VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT 611 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc
Confidence 12224556667788888888433332 223222 2233332222222222222222244444444333333 2
Q ss_pred CCChH---HHHHhhhhhccccchHHHHHHHHHhhhcC
Q 001509 567 GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDAT 600 (1065)
Q Consensus 567 p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 600 (1065)
|.... ++++++.+++..|++++|...+..+....
T Consensus 612 ~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 612 PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 33222 23478888888899999988888776643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=44.56 Aligned_cols=33 Identities=21% Similarity=0.509 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
.+++.+|.+++..|++++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0069 Score=59.73 Aligned_cols=121 Identities=21% Similarity=0.170 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHH
Q 001509 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505 (1065)
Q Consensus 426 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 505 (1065)
.++..-|.-++..|+|.+|...|..|+..-... .+...+.. .++ +.++....+.+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L-~lkEkP~e--------------~eW----------~eLdk~~tpLl 233 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNL-QLKEKPGE--------------PEW----------LELDKMITPLL 233 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH-HhccCCCC--------------hHH----------HHHHHhhhHHH
Confidence 456777999999999999999999998631100 00010000 000 11233356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 571 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 571 (1065)
.|++.|+...|++-++++....++..+|.+..+|++.|......=+..+|...|.+++.++|.-..
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 899999999999999999999999999999999999999999888999999999999999886544
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.018 Score=63.69 Aligned_cols=175 Identities=19% Similarity=0.206 Sum_probs=120.4
Q ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001509 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1065)
Q Consensus 25 d~~~~~~~L~~e~~~~~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~--y~~~g~~~~~ 102 (1065)
|+..++.+|...|-..+.+++++.++..+|+...|-.++++++-. | ++. ........ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 999999999999999999999999999999999999999998422 0 000 00000000 00111111
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCC
Q 001509 103 QREKEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVP-ALLGQACVEFNRGR 177 (1065)
Q Consensus 103 ~~~k~~~~~~A~~~~~~a~~~~p~~~---~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~-a~~~la~~~~~~g~ 177 (1065)
.--..+.|. .+++.....+.++|-+..|+++++-++.++|. ++. +++.+-....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 000112222 34556677888999999999999999999998 664 44555556677788
Q ss_pred hHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 001509 178 YSDSLEFYKRALQVHPSC----PGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1065)
Q Consensus 178 ~~~Al~~~~~al~~~p~~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1065)
|+--+.+++......... .+...+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 888888887765521111 234567888888888888 7888888888887764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.12 Score=56.38 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHH
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYK---LGQLGKARQAFQR-ALQLDPENVEALV 235 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~----~p~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~a~~ 235 (1065)
....+-.+|....+|+.-+.+.+.+-.+ -++. ..+.+.+|.++.+ .|+.++|+..+.. +....+.+++.+.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~-~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ-HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc-hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344444555555555555555544433 1222 3445555666655 5666666666655 3333444555566
Q ss_pred HHHHHHHHc------cchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHH
Q 001509 236 ALAVMDLQA------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1065)
Q Consensus 236 ~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 309 (1065)
.+|.+|-.. .+....++|+..|.+++..+|+.-. -.+++.++...|.......-..+. -.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtLL~~~g~~~~~~~el~~i-------------~~ 287 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATLLMLAGHDFETSEELRKI-------------GV 287 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHcCCcccchHHHHHH-------------HH
Confidence 666555321 1223477888888888888864332 233344444444322211111110 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
.+...+.+.|..+ .....+.+-.++.+.+-.|++++|+..+++++...|..
T Consensus 288 ~l~~llg~kg~~~---------------~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 288 KLSSLLGRKGSLE---------------KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHhhcccc---------------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1112222222211 12222334445666667778888888888887776553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.022 Score=54.79 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001509 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1065)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1065)
...++..+...|++++|...+..++....+..-...+-.+++.+++..|.+++|+..+....... -.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 34445555555555555555555553222212223344556666666666666666665543210 01233445566666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 001509 388 QLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 388 ~~g~~~~A~~~~~~al~~~p~ 408 (1065)
..|+..+|+..|.+++...++
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 171 AKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HcCchHHHHHHHHHHHHccCC
Confidence 666666666666666666533
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.082 Score=55.05 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHH
Q 001509 690 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 767 (1065)
Q Consensus 690 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nl 767 (1065)
.+..+-.-|+-|++.++|..|+..|.+.|+.--..++ ...|.+.+-+.+..|+|..|+.-..+++.+.|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4456667789999999999999999999987444444 67778889999999999999999999999999999888877
Q ss_pred HHHh
Q 001509 768 GVAM 771 (1065)
Q Consensus 768 a~~~ 771 (1065)
|.|+
T Consensus 160 Akc~ 163 (390)
T KOG0551|consen 160 AKCL 163 (390)
T ss_pred hHHH
Confidence 7763
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.044 Score=52.79 Aligned_cols=120 Identities=19% Similarity=0.045 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 001509 252 KGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1065)
Q Consensus 252 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1065)
+......+....+|.+. .+...++..++..+++++|+..++.++..+.+....+.+-..++++...+|.++.|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555555565543 345667899999999999999999999887776677788899999999999999999988
Q ss_pred HHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
..... +..........|.++...|+-.+|...|++++...++.
T Consensus 150 ~t~~~----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKE----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccc----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 76653 22233445668999999999999999999999987543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0018 Score=43.95 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
.+++.+|.+|...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0018 Score=43.87 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555556666666666555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.2 Score=50.55 Aligned_cols=236 Identities=14% Similarity=0.050 Sum_probs=153.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 001509 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGV 433 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~ 433 (1065)
...-..|+.+.+.++..+|.+..+|...-.++..++ +..+-+.++..++.-+|.+.+ +|...-.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ---------------vWHHRr~ 120 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ---------------VWHHRRV 120 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh---------------HHHHHHH
Confidence 345567888888888899988888888777776664 567778888888888888884 5666666
Q ss_pred HHHHcCCHH-HHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHHHH
Q 001509 434 IHFEKGEFE-SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 512 (1065)
Q Consensus 434 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 512 (1065)
+....|++. .-+...+.++. .+..+-.+|...--++
T Consensus 121 ive~l~d~s~rELef~~~~l~-------------------------------------------~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 121 IVELLGDPSFRELEFTKLMLD-------------------------------------------DDAKNYHAWSHRQWVL 157 (318)
T ss_pred HHHHhcCcccchHHHHHHHHh-------------------------------------------ccccchhhhHHHHHHH
Confidence 666677766 56666666665 2334556666666677
Q ss_pred HHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHCCCChHHHHHhhhhhcc-cc-
Q 001509 513 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNALSMLGDLELK-ND- 584 (1065)
Q Consensus 513 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g- 584 (1065)
...+.++.-+.+...+++.+-.+-.+|+..-.+... .| ..+.-+.+..+.+.+.|++..+|..|.-++.. .|
T Consensus 158 r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 158 RFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 777788888888888888777666666554333222 22 23345667778888899999999888777664 44
Q ss_pred -chHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHH-hhCCcch
Q 001509 585 -DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHTSNL 652 (1065)
Q Consensus 585 -~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p~~~ 652 (1065)
............+...+...++.+--|..+ |...+...+...+ .-..+|..+|+.+- +.+|-..
T Consensus 238 ~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~---~~a~~a~~ly~~La~~~DpiR~ 303 (318)
T KOG0530|consen 238 SSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAE---ELARKAVKLYEDLAIKVDPIRK 303 (318)
T ss_pred cCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccch---HHHHHHHHHHHHHhhccCcHHH
Confidence 244455555555444455677777777777 6333222221111 01224777776655 5666533
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0027 Score=43.01 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+|+.+|.+++..|++++|+..|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.76 E-value=1.9 Score=50.96 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=128.6
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCChHHHHHhhhh
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 579 (1065)
....|..+.......|.+..-...+++++...+.....|+..+...- ..+-...+...+..++...|-...+|...-..
T Consensus 311 ~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallA 390 (881)
T KOG0128|consen 311 KDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLA 390 (881)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHH
Confidence 33445555566666777777777777777777777777766655432 23334444555555666666554444433222
Q ss_pred hccccc-hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHh-hhh----cChhHHhhhHHHHHHHHHHHHhhC-Ccch
Q 001509 580 ELKNDD-WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR-NEK----RAPKLEATHLEKAKELYTRVIVQH-TSNL 652 (1065)
Q Consensus 580 ~~~~g~-~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~-~~~----~~~~~~~~~~~~A~~~~~~~l~~~-p~~~ 652 (1065)
+.+.+. ...-...+.+.+...- .+.+- |+...+ ... .....-+..|..|..+|....... -...
T Consensus 391 leR~re~~~vI~~~l~~~ls~~~--------~l~~~-~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~ 461 (881)
T KOG0128|consen 391 LERNREEITVIVQNLEKDLSMTV--------ELHND-YLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRT 461 (881)
T ss_pred HHhcCcchhhHHHHHHHHHHHHH--------HHHHH-HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 222222 2222233333332110 01111 111100 000 011112366777888877776652 2233
Q ss_pred HHHhHHHHHHH-hcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHH
Q 001509 653 YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQIL 730 (1065)
Q Consensus 653 ~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 730 (1065)
..+...|.+.+ ..++.+.|+.+.+.+.....+ .....|+....+-...|+...+..++.+|+.....+.+ -.++
T Consensus 462 ~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~ 537 (881)
T KOG0128|consen 462 EVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVL 537 (881)
T ss_pred HHHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHH
Confidence 45566666666 457899999988887664431 23337888888888889999999999999876444433 3444
Q ss_pred HHHHHHHHHhhcHHHHHHH
Q 001509 731 LYLARTHYEAEQWQDCKKS 749 (1065)
Q Consensus 731 ~~lg~~~~~~g~~~~A~~~ 749 (1065)
...-+.....|.++.....
T Consensus 538 ~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 538 EFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHhccccHHHHhhh
Confidence 4444444455555554433
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.044 Score=56.96 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1065)
.+-.-|+-|+...+|..|..+|...|+.... ++..|.+.|.+.+..|+|..|+..+.+++..+|.+ .-+++.-+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhH
Confidence 4445678888888888888888888776433 34567778888888888888888888888888888 566777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 001509 206 CRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
|++.+..+..|..+.+..+.++-
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888887766543
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=1.1 Score=55.46 Aligned_cols=141 Identities=13% Similarity=0.142 Sum_probs=103.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhc
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~ 123 (1065)
+.+-.+++....|+.|+..|.++..+ |++.+ +--.+.+.+|...+...+...+ ...|.+|+..|++.- -
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~ 547 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRES-----FPGRK-EGYEAQFRLGITLLEKASEQGD----PRDFTQALSEFSYLH-G 547 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhc-----CCCcc-cchHHHHHhhHHHHHHHHhcCC----hHHHHHHHHHHHHhc-C
Confidence 55667788888999999999997554 43322 3345677778777776665433 257889999998864 4
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC
Q 001509 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-----GRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 124 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-----g~~~~Al~~~~~al~~~p~~ 195 (1065)
.|.-|--|+..|.+|...|+|++-+++|.-+++..|+++..-...-.+.++. .+-..|+...--++...|..
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4777888999999999999999999999999999999876655544444433 23345666666677777766
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.4 Score=48.30 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
+|+...|.+-+..+++..|..|......+.++...|.|+.|...+..+-..-..-..+...+-+..+..|++++|+....
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 45556666666667777777777777777777777777777777665544433334445555566677777777777766
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001509 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1065)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1065)
-++.-.-+. +.+....+...-.+|-+++|.-.|++++.++|.....|
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 666554444 33333344455566777777777777777776544333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.96 Score=45.75 Aligned_cols=202 Identities=16% Similarity=0.159 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCCCCCHHHHHH
Q 001509 355 LGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNN 430 (1065)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~ 430 (1065)
...+++|+..|++++++.+.. ..++..+..+++++|++++-...|.+++..-.... ....+....++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV---------TrNySEKsIN~ 110 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV---------TRNYSEKSINS 110 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH---------hccccHHHHHH
Confidence 347899999999999987764 45777888899999999999999988775311100 00111122333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHHH
Q 001509 431 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 510 (1065)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~ 510 (1065)
+-..-....+.+.-...|+..+..- .... ........-..+|.
T Consensus 111 IlDyiStS~~m~LLQ~FYeTTL~AL------------------------------kdAK-------NeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 111 ILDYISTSKNMDLLQEFYETTLDAL------------------------------KDAK-------NERLWFKTNTKLGK 153 (440)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH------------------------------Hhhh-------cceeeeeccchHhh
Confidence 3333223333333333333332200 0000 01111223345888
Q ss_pred HHHHcCChHHHHHHHHHHHHHCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--hH----H
Q 001509 511 LLEQIHDTVAASVLYRLILFKYQD------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY--PN----A 572 (1065)
Q Consensus 511 ~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~----~ 572 (1065)
+|...|.+..-..+++++-..+.. ....|..-..+|..+.+...-..+|++++.+...- |. +
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI 233 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI 233 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence 888888888888887776653321 14466666778888888888889999999876433 32 3
Q ss_pred HHHhhhhhccccchHHHHHHHHHhhhcCCC
Q 001509 573 LSMLGDLELKNDDWVKAKETFRAASDATDG 602 (1065)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 602 (1065)
.-.=|..+++.|+|.+|..-|-.+.+.++.
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 334567788899999999988888876543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=50.69 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=83.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCC
Q 001509 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1065)
Q Consensus 46 ~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p 125 (1065)
.|..++..|++-+|+.+++.++...... . ...-++..-|.++..++..-.+...|..++..++++|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5789999999999999999986542211 0 112456667888888888777777888888899999999999999
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1065)
Q Consensus 126 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 157 (1065)
..+..++.+|.-+-...-|+++..-.++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888877777788888888887765
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.17 Score=55.57 Aligned_cols=83 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHH
Q 001509 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
+.-+.+|++|++.+|++ ..+++.+-.+..+..+.+....-|++++..+|++...|..+.......-..-.+......|.
T Consensus 48 E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34567777888888876 56666666666677777777777888888888777776655544433211111445555555
Q ss_pred HHHH
Q 001509 259 RAFE 262 (1065)
Q Consensus 259 ~al~ 262 (1065)
+++.
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 5543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.093 Score=58.14 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=101.8
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------C------------CCC---HHHHHHHH
Q 001509 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------D------------RDN---VPALLGQA 169 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~a~~~la 169 (1065)
..+..+|.+.++++.++.++..+|++..|..++++++-. + +.| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 346788999999999999999999999998888887521 1 122 23456667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1065)
..+.++|-+..|+++++-++.++|. +|-.+++.+-....+.++++--+..++........ -+...+..+..+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7788889999999999999999988 67777787888888888888777777765442111 11233344444444
Q ss_pred ccch------------HhHHHHHHHHHHHHHhCCC
Q 001509 244 ANEA------------AGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 244 ~~~~------------~~~~~A~~~~~~al~~~p~ 266 (1065)
.++. ...+.|-..+.+++...|.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4431 1125666666666666553
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.46 Score=51.69 Aligned_cols=172 Identities=19% Similarity=0.119 Sum_probs=114.0
Q ss_pred HcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHCCCChHHHHHhhhhhcc----ccc
Q 001509 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----NDD 585 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~ 585 (1065)
..+.+..|...+..+-. -....+...++.++... .+...|..+|.. .....++...+.||.+|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccC
Confidence 44677777777777654 22336777778777653 368889999994 4456678889999999887 458
Q ss_pred hHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcchHHHhHHHHHHHhc
Q 001509 586 WVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 665 (1065)
Q Consensus 586 ~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 665 (1065)
..+|..+|.++.......-..+...+|.+ |.... .... -..+...|...|.++.... ++.+...+|.+|..-
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~~----~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G 200 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QALA----VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG 200 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhhc----ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC
Confidence 99999999999887654224457778877 66541 0000 0033456777777776655 555666677666542
Q ss_pred ----CCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcC
Q 001509 666 ----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 705 (1065)
Q Consensus 666 ----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g 705 (1065)
.++.+|...|.++.+.. + +...++++ +++..|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 36777777777777654 2 56677777 555555
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.18 Score=55.36 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccc---------hHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001509 219 AFQRALQLDPENVEALVALAVMDLQANE---------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1065)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1065)
-|.+.+..+|.++.+|+.+..+.-..-. ....+..+.+|++|++.+|++...+..+-.......+.+....
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666667777776666654433311 1224566677777777777777777777777777777777777
Q ss_pred HHHHHHhccCCCCCchHHHHHHH---HHHHHcCCHHHHHHHHHHHHHh
Q 001509 290 LTETALAVTNHGPTKSHSYYNLA---RSYHSKGDYEKAGLYYMASVKE 334 (1065)
Q Consensus 290 ~~~~al~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~al~~ 334 (1065)
.++.++...+. ....|.... ...+..-.+......|.+++..
T Consensus 87 ~we~~l~~~~~---~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 87 KWEELLFKNPG---SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHCCC---ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 77777766432 333333322 2222334566777777777653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.21 Score=47.74 Aligned_cols=28 Identities=21% Similarity=0.096 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccc
Q 001509 428 LNNIGVIHFEKGEFESAHQSFKDALGDG 455 (1065)
Q Consensus 428 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 455 (1065)
+...|......|+...++..+.+++.+.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly 36 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALY 36 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3444666677889999999999999853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0025 Score=66.24 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1065)
|+.|+..|..++.++|.....+..++.+++..++...|+.-|..++.++|+...-+-..+.....+|++.+|...+..++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 33555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HhC
Q 001509 190 QVH 192 (1065)
Q Consensus 190 ~~~ 192 (1065)
+++
T Consensus 210 kld 212 (377)
T KOG1308|consen 210 KLD 212 (377)
T ss_pred hcc
Confidence 443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.41 Score=53.76 Aligned_cols=157 Identities=19% Similarity=0.167 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhh------------cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 001509 109 HFILATQYYNKASR------------IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------- 157 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~------------~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------- 157 (1065)
-|.+|...|.-+.. ..|.+...++.++.++..+|+.+.|..+..++|-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 35566666655433 35777889999999999999988887777776521
Q ss_pred --CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHh
Q 001509 158 --DRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQL 226 (1065)
Q Consensus 158 --~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~ 226 (1065)
.|.|- .+++..-..+.+.|-+..|+.+++-++.++|. +|-.+.+.+-....+..+|.=-+..++.. +..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 22332 23444455667789999999999999999998 66666676766777888888777777765 333
Q ss_pred CCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCC
Q 001509 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1065)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 266 (1065)
-|+ ...-..++.+++..........|...+.+|+.+.|.
T Consensus 413 ~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 413 LPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred cCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 453 344566777777776655577888899999988874
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0062 Score=63.43 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=85.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCH
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1065)
.+.-.+..|.++.|+..|..++.++|.....+...+.+++..++...|+..|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556678889999999999999999999999999999999999999999999999999999 55678889999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 001509 214 GKARQAFQRALQLDP 228 (1065)
Q Consensus 214 ~~A~~~~~~al~~~p 228 (1065)
.+|...|..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998864
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.098 Score=50.02 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1065)
++..++..+...|++..|+..+++++..+|-+ ..++..+..++...|+...|+..|.++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44455555666666666666666666666666 5556666666666666666666666553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0099 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 730 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
++.+|.++...|++++|+..|++++..+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444444555444555555555555444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.012 Score=40.38 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 001509 693 VWINLAHVYFAQGNFALAMKMYQNCLRKF 721 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 721 (1065)
+|.+||.+|..+|+|++|+.+|++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36678888888888888888888866543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=1.1 Score=48.74 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 178 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~ 178 (1065)
...+..|...+..+... .++...+.++..|... .+..+|...|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 34566777777777652 2335677777777654 45788888888543 44577888888888877 4588
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cchHhH
Q 001509 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1065)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1065)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++-... ++.+.+.+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 899999999988754431234566777776542 2336888888877665 677778888776553 333457
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1065)
Q Consensus 251 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1065)
.+|+..|.++..... ...++.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 888888888877765 66667777 555555
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.016 Score=38.81 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcC
Q 001509 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 723 (1065)
Q Consensus 692 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 723 (1065)
++++++|.+|...|++++|+..|+.+++.+|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999875
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=2.3 Score=47.99 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001509 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1065)
....+.+.......|+++...+..+..+...|+.+.|+..|...+...-. ....++.+|.++....+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666677888888888888888888888888888877661100 2345677888888888999998888888
Q ss_pred HHhCCCCchHHHHHHHHHHH
Q 001509 189 LQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~ 208 (1065)
...+.-+.....+..|.|++
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHh
Confidence 87776663333344455554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.015 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
+++.+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666666666666666666666666663
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.015 Score=39.30 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 001509 729 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 729 ~~~~lg~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
+++.+|.+|...|++++|..+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444455555555555555555555555544
|
... |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.071 Score=47.87 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 690 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 690 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
.....|+++|++.... +..+.+.+++..++.-+....-+.+|+|+..+++.++|+.++.+....++..|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4578899999998765 45678899999987322233478999999999999999999999999999999998766
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=47.85 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
..++....+-+..++.+.+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +.+.-.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3456666777777888888888888888888888888888888889999999999988887777777 666777888888
Q ss_pred HcCCHH
Q 001509 209 KLGQLG 214 (1065)
Q Consensus 209 ~~g~~~ 214 (1065)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 887753
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=3.1 Score=42.72 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHH
Q 001509 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 506 (1065)
Q Consensus 427 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 506 (1065)
+-..+..+++..|.|.+|+......+..-. ..+..+....++.
T Consensus 127 Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vhl 169 (421)
T COG5159 127 LECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVHL 169 (421)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehhh
Confidence 445677889999999999988877664110 0113445566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-----HCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHC
Q 001509 507 NLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYL--RLAAIAKARNNLQLSIELVNEALKVN 566 (1065)
Q Consensus 507 ~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~--~la~~~~~~g~~~~A~~~~~~al~~~ 566 (1065)
.-..+|....+..++...+..+-. ..|....+.+ .-|.+.+...+|..|..+|-++++-.
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 777788887877777766665543 2343333322 22445566678888888888877744
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=4.2 Score=42.99 Aligned_cols=170 Identities=11% Similarity=0.055 Sum_probs=105.1
Q ss_pred HHHHHHHHHccchHhHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC--CCch-
Q 001509 235 VALAVMDLQANEAAGIRKGMEKMQRAFE----IYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG--PTKS- 305 (1065)
Q Consensus 235 ~~la~~~~~~~~~~~~~~A~~~~~~al~----~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~- 305 (1065)
..|..+|...++ |.+|+......+. ++. .-..+...-...|+...+..+|...+..+....+.. |...
T Consensus 132 arli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQ 208 (411)
T KOG1463|consen 132 ARLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQ 208 (411)
T ss_pred HHHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHH
Confidence 356667777777 8888877666553 222 223455556778888888888877777666543321 2222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhh---hhhHHHHHHHcCCHHHHHHHH--HHHHHhCCCcHHHH
Q 001509 306 -HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETL 379 (1065)
Q Consensus 306 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~ 379 (1065)
..-..-|..+....+|..|..||-.+.+.+..-...+.+ +-.+-.|-+..+..++--.++ ..+++.......++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Am 288 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAM 288 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHH
Confidence 222334666777789999999999998766533332232 233344445556666544433 44555555567888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 001509 380 KALGHIYVQL--GQIEKAQELLRKAAKIDP 407 (1065)
Q Consensus 380 ~~la~~~~~~--g~~~~A~~~~~~al~~~p 407 (1065)
...+..+.+. .+|+.|+.-|..-+..+|
T Consensus 289 kavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 289 KAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 8888877654 467888888877666554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.9 Score=43.73 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=129.1
Q ss_pred cCChHHHHHHHHHHHHHCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChH-HHHHhhhhhcccc
Q 001509 515 IHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYPN-ALSMLGDLELKND 584 (1065)
Q Consensus 515 ~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~l~~~~~~~g 584 (1065)
...+++|+..|+++++..+.- ..++-.+..+++..|++.+-+..|.+++..- .+..+ ....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 358899999999999988765 4577788889999999999998888876532 11111 1111111112223
Q ss_pred chHHHHHHHHHhhh---cCCCCCh--HHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc---------
Q 001509 585 DWVKAKETFRAASD---ATDGKDS--YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--------- 650 (1065)
Q Consensus 585 ~~~~A~~~~~~al~---~~~~~d~--~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--------- 650 (1065)
+..--..+|+..+. ....... .....||.+ |+.. +.|.+-..+++++-.....
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl-~fd~------------~e~~kl~KIlkqLh~SCq~edGedD~kK 186 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKL-YFDR------------GEYTKLQKILKQLHQSCQTEDGEDDQKK 186 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhh-heeH------------HHHHHHHHHHHHHHHHhccccCchhhhc
Confidence 33333344444333 1111111 244578888 8888 7777766666665443111
Q ss_pred ---chHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 651 ---NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 651 ---~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
-...+..-.++|..+.+-..-..+|++++...+.-++|-. ..+.-.=|..+++.|+|.+|-.-|=.|++.+.....
T Consensus 187 GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 187 GTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred cchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 1122233356777888888888899999887654333221 122233356688889999999999888887644333
Q ss_pred ---HHH--HHHHHHHHHHhh
Q 001509 727 ---AQI--LLYLARTHYEAE 741 (1065)
Q Consensus 727 ---~~~--~~~lg~~~~~~g 741 (1065)
... +.-|+..+.++|
T Consensus 267 pRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 267 PRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cchhHHHHHHHHHHHHHHcC
Confidence 222 333455555543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.16 Score=51.63 Aligned_cols=96 Identities=11% Similarity=0.181 Sum_probs=64.9
Q ss_pred cCCcHHHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HHhcCCC----cHHHHH
Q 001509 665 KGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL-------RKFYYNT----DAQILL 731 (1065)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~~~~~----~~~~~~ 731 (1065)
...+++|+..|.-++-... +......+.++..+||+|..+|+.+....++++|+ .....+. ...+++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456666666666554432 11111346688899999999998655555555544 4322222 278899
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHhCCCC
Q 001509 732 YLARTHYEAEQWQDCKKSLLRAIHLAPSN 760 (1065)
Q Consensus 732 ~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 760 (1065)
.+|.+.++.|++++|..+|.+++...-.+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999865443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.071 Score=40.01 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
+.++++|..+++.|++.+|+.+...+++..|+|..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4689999999999999999999999999999998776
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.75 Score=43.44 Aligned_cols=136 Identities=12% Similarity=0.050 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHhhCCcc--hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHH
Q 001509 632 THLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 709 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 709 (1065)
+..++|+.-|..+-+..-.+ +.+....+.+..+.|+...|+..|..+-.-.|-+.. -.-.+.+.-+.++...|-|++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-GRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHHHhccccHHH
Confidence 66778888887776655442 456677789999999999999999998776542110 112345566778889999998
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHHHHHHH
Q 001509 710 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 710 A~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
-....+... ...++....+.-.||.+-++.|++.+|...|..+.. +.+.|....+-|.+
T Consensus 151 V~srvepLa-~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 151 VSSRVEPLA-GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHhhhcc-CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 877766533 222333467778899999999999999999998877 33334444444443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.03 E-value=8.1 Score=43.80 Aligned_cols=238 Identities=15% Similarity=0.020 Sum_probs=137.0
Q ss_pred CCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Q 001509 497 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY----VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 572 (1065)
Q Consensus 497 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 572 (1065)
..|..+...+..+..+...|+.+.|+.++...+. +.. .-.++.++.++.-..+|..|...+..+...+.-..-.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~ 339 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAF 339 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHH
Confidence 4456777778888888888887777787777765 222 3366777888888888888888888887776544444
Q ss_pred HHHhh-hhhccc--------cchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHH
Q 001509 573 LSMLG-DLELKN--------DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 643 (1065)
Q Consensus 573 ~~~l~-~~~~~~--------g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 643 (1065)
|..++ -|++.. |+-+.|..+++.... +... .. ++...++.-..++.++-.+
T Consensus 340 Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~-----------------l~~~--a~-K~~P~E~f~~RKverf~~~ 399 (546)
T KOG3783|consen 340 YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE-----------------LLAN--AG-KNLPLEKFIVRKVERFVKR 399 (546)
T ss_pred HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH-----------------HHHh--cc-ccCchhHHHHHHHHHHhcc
Confidence 44443 444332 233333333332211 1110 00 1111111223333333222
Q ss_pred HHhhCCcchHH--HhHHHHHHHhc--CCcHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 644 VIVQHTSNLYA--ANGAGVVLAEK--GQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCL 718 (1065)
Q Consensus 644 ~l~~~p~~~~a--~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 718 (1065)
.- .++..+.+ +..++.++..- ...++.. -+...++ .|....+ +..-.++.+|.++..+|+...|..+|..++
T Consensus 400 ~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 400 GP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred cc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 22333222 23444443321 1222222 1122222 2222111 222356788999999999999999999999
Q ss_pred HHhcCCC-c----HHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhCCC
Q 001509 719 RKFYYNT-D----AQILLYLARTHYEAEQ-WQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 719 ~~~~~~~-~----~~~~~~lg~~~~~~g~-~~~A~~~~~kal~~~P~ 759 (1065)
+.....+ + |-++|.+|..++..|. ..+|..++.+|.....+
T Consensus 477 ~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 477 EKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 6532222 2 8899999999999999 99999999999887743
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.26 Score=42.18 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHcCC
Q 001509 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~ 212 (1065)
+..+++.+..+|++..+.+.+|..+...|++++|+..+-.+++.+++. ...++-.+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666677777777777777777777777777777666666554 23334444444444444
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.14 Score=38.43 Aligned_cols=40 Identities=23% Similarity=0.059 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1065)
.++.+|..++..|+|.+|..+++.+++..|+|..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566677777777777777777777777777766655443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.34 Score=42.45 Aligned_cols=45 Identities=24% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001509 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1065)
Q Consensus 253 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1065)
+++.+.++..+.|..+..++.+|.-+-....|.++..-.++++..
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 445555555555555666666666555555566666665555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.43 Score=45.08 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001509 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163 (1065)
Q Consensus 84 ~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (1065)
..+..+..+-+..+... .+..++.-+--+.|..+..-+.-|.+++..|+|.+|+..|+.+....|..+.
T Consensus 11 ~gLie~~~~al~~~~~~-----------D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPD-----------DAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHccCChH-----------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 34444455555555444 8888898888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
+--.++.|++..|+..== .+-..++...++
T Consensus 80 ~kALlA~CL~~~~D~~Wr-~~A~evle~~~d 109 (160)
T PF09613_consen 80 AKALLALCLYALGDPSWR-RYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHHcCChHHH-HHHHHHHhcCCC
Confidence 999999999988886432 223344444443
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.39 E-value=15 Score=43.89 Aligned_cols=117 Identities=18% Similarity=0.055 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN---RGRYSDSLEF 184 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~Al~~ 184 (1065)
+.-+.=+..+..-+.+++.+...++.+..++...|++++-...-..+..+.|.++..|+....-... .+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444556667777778888888888888888999998887777777777888888887766554333 3667778888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKL-------GQLGKARQAFQRALQL 226 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~ 226 (1065)
|.+++.-.-.. .+|...+..+... ++++.-...|.+++..
T Consensus 173 ~ekal~dy~~v--~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 173 FEKALGDYNSV--PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHhcccccc--hHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 88887644332 3355555444433 4566667777777654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.63 Score=42.07 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 161 NVPALLGQACVEFNRGR---YSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1065)
Q Consensus 161 ~~~a~~~la~~~~~~g~---~~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1065)
.....+.+|+++....+ ..+.+.+++.+++ ..|.......+.++..++++++|+.++.+....++..|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35667888888877644 5678888888886 6676666778889999999999999999999999999998887544
Q ss_pred HH
Q 001509 237 LA 238 (1065)
Q Consensus 237 la 238 (1065)
--
T Consensus 111 k~ 112 (149)
T KOG3364|consen 111 KE 112 (149)
T ss_pred HH
Confidence 33
|
|
| >PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.0012 Score=49.95 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-----hcCCch
Q 001509 882 KLEDEQKRLRQQEEHFQRVKEQW-----RSSTPA 910 (1065)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~ 910 (1065)
++.+..++|+.++++..+||||| ||+|+|
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhcccCC
Confidence 34555679999999999999999 888875
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.24 Score=50.78 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1065)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1065)
|..++|..+|..++.++|.++.+++.+|......+++-+|-.+|-+++.++|.|..++.+.+
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 33334555555555555555555555555444444455555555555555555544444433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.37 Score=41.17 Aligned_cols=74 Identities=18% Similarity=0.082 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHH
Q 001509 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYK 186 (1065)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1065)
.+..+.+.+..+|++..+.+.+|..++..|+++.|+..|-.+++.+++. ..+.-.+-.++-..|.-.....-|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4667888899999999999999999999999999999999999988765 4455555555555555443333333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.08 E-value=4.8 Score=38.31 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chHHHHHHHHHHHH
Q 001509 135 GQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRYK 209 (1065)
Q Consensus 135 g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~~~ 209 (1065)
+.-+.+.+..++|+..|..+-+..-.+ ..+.+..|.+....|+...|+..|..+-.-.|.. ...+++.-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 333445566666666666665543333 3345566666666666666666666665544332 12345555566666
Q ss_pred cCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Q 001509 210 LGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~ 262 (1065)
.|-|+.-..-.+-+- ..+|--..+.-.||...++.|+ +..|...|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 666665544443321 1233334445555555555555 5555555555443
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.6 Score=50.84 Aligned_cols=8 Identities=63% Similarity=0.954 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001509 865 EARRKAEE 872 (1065)
Q Consensus 865 ~~~~~~~e 872 (1065)
+.++++++
T Consensus 247 Eer~~ee~ 254 (1064)
T KOG1144|consen 247 EERRREEE 254 (1064)
T ss_pred HHHHHHHH
Confidence 33333333
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.1 Score=37.70 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC----Cc--
Q 001509 660 VVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN----TD-- 726 (1065)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~-- 726 (1065)
.-....|.|++|...+.++.+....-+.. -+.-++-.|+..+..+|+|++++..-..+|..|... .+
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 33445577777777777777665321000 134466677888999999999999999999877432 22
Q ss_pred ---HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 727 ---AQILLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 727 ---~~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
..+.+.-+.++...|+.++|+..|+.+-+.
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 445566788889999999999999987653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.11 Score=35.55 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKI 153 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~ 153 (1065)
|..+|.+|...|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.56 Score=46.21 Aligned_cols=105 Identities=10% Similarity=0.170 Sum_probs=84.3
Q ss_pred hHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc----H
Q 001509 652 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----A 727 (1065)
Q Consensus 652 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~ 727 (1065)
..++..+|..|...|+++.|+..|.++++...+.. ...++++++..+.+..|++.....+..++-.......+ .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 35788999999999999999999999988664322 35678899999999999999999999998876544444 3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCC
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
.+-.+-|..+...++|..|...|-.+..-..
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 4455678888889999999999877765544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.67 E-value=19 Score=42.44 Aligned_cols=252 Identities=14% Similarity=0.123 Sum_probs=131.9
Q ss_pred HcCChHHHHHHHHHHHHHC--CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH-HHhhhhhccccch
Q 001509 514 QIHDTVAASVLYRLILFKY--QD----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL-SMLGDLELKNDDW 586 (1065)
Q Consensus 514 ~~g~~~~A~~~~~~al~~~--p~----~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~ 586 (1065)
..|+..+|..++.-.+-.. |. ...+++.+|.++...|.- ..+++...+....+..-.+ ..||.-+..+|.-
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 4577888888777766442 11 134788888888777765 7778877777655333222 1344444444432
Q ss_pred HHHHHHHHHhhh---cCCC-CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHH-HHHHHHhhCCcchHHHhHHHHH
Q 001509 587 VKAKETFRAASD---ATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE-LYTRVIVQHTSNLYAANGAGVV 661 (1065)
Q Consensus 587 ~~A~~~~~~al~---~~~~-~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~~~~a~~~la~~ 661 (1065)
. .+.|+++-. .... .-..+-+.||-+ .... . -.+|++ ++.-+-+.....+.--.++|..
T Consensus 447 ~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~-mlGt------------~-~~eaiedm~~Ya~ETQHeki~RGl~vGia 510 (929)
T KOG2062|consen 447 N--EEIYEKLKEVLYNDSAVSGEAAGIAMGLL-MLGT------------A-NQEAIEDMLTYAQETQHEKIIRGLAVGIA 510 (929)
T ss_pred c--HHHHHHHHHHHhccchhhhhHHHHhhhhH-hhCc------------C-cHHHHHHHHHHhhhhhHHHHHHHHHHhHH
Confidence 1 233333322 2111 111234455544 2222 1 223333 2222222222334444566777
Q ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHH
Q 001509 662 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYE 739 (1065)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~lg~~~~~ 739 (1065)
+.--|+-++|-.+.++++.-. .+. -...-.+.+|..|...|+..--...+.-++.. .+.| ..+-..+|.+++
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpi--lR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~- 584 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPI--LRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLF- 584 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chh--hhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEe-
Confidence 777788888888888876532 100 11234567888888888876655555555433 1222 223334454443
Q ss_pred hhcHHHHHHHHHHHHHhCCCCcchHHHHHHHhhHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Q 001509 740 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA 808 (1065)
Q Consensus 740 ~g~~~~A~~~~~kal~~~P~~~~~~~nla~~~~~~~~~~l~~~~~~~~~~~~a~~~l~~a~~~~~~l~~ 808 (1065)
.+++.+..+..-+-+- -|+.++|..|+++-. -.|=.++.+|+.++.-+-.
T Consensus 585 -~dp~~~~s~V~lLses--~N~HVRyGaA~ALGI----------------aCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 -RDPEQLPSTVSLLSES--YNPHVRYGAAMALGI----------------ACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred -cChhhchHHHHHHhhh--cChhhhhhHHHHHhh----------------hhcCCCcHHHHHHHhhhhc
Confidence 4566666655544333 367777777765432 2223356666666666654
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.52 Score=49.62 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=38.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 134 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
+-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|+..++..+...|++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 44455566666666666666666666666666666666666666666666666666666665
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.73 Score=42.73 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=61.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
++.....-+..++++.+..++..+--+.|+.+..-..-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|++.+
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al 91 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhc
Confidence 34444445557788888888887777788888888888888888888888888888887777666 55566777787777
Q ss_pred CCH
Q 001509 211 GQL 213 (1065)
Q Consensus 211 g~~ 213 (1065)
|+.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.37 Score=47.49 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1065)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1065)
.++..+|.+|...|+++.|++.|.++...........+.++.+.++.+..+++.....++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555666666666666665555554433344455555555555666666655555555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.81 Score=48.19 Aligned_cols=74 Identities=16% Similarity=0.000 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
+.++-.++...+++..|+.+.+.++.+.|++ +.-+--.|.+|.++|.+..|...++..++..|+++.+......
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3445556777788888888888888888887 4446667888888888888888888888888877766544433
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=20 Score=41.06 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHH------------HCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----C------------
Q 001509 516 HDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----N------------ 566 (1065)
Q Consensus 516 g~~~~A~~~~~~al~------------~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-----~------------ 566 (1065)
.-|++|...|.-+.. .+|-+++.++.++.+...+|+.+.|..++.+++=. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 445566666665554 34566889999999999999999988888877642 1
Q ss_pred ----CCChHHHH---HhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHH
Q 001509 567 ----GKYPNALS---MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 639 (1065)
Q Consensus 567 ----p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~ 639 (1065)
|.+..+|. .......+.|-|..|.++.+-+++..|..|+++...+.++ |.-.+ .+|.=-+.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI~ 399 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWIIE 399 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHHH
Confidence 22333332 2333445678899999999999999999899988888887 54331 66666666
Q ss_pred HHHHH-----HhhCCcchHHHhHHHHHHHhcCC---cHHHHHHHHHHHHHhc
Q 001509 640 LYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 640 ~~~~~-----l~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 683 (1065)
+++.. +..-|+-.+ -..+|..|..... -..|...+.+++...|
T Consensus 400 ~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 400 LSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 66554 334455433 2345666665544 5678888888888765
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.31 Score=50.08 Aligned_cols=69 Identities=28% Similarity=0.424 Sum_probs=46.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|.-....|+.+.|..+|..++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.+..++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 334456667777777777777777777 556666776666666677777777777777777766665554
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.05 E-value=3.5 Score=36.43 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhhcCCCC------------hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE------------PSTWVGKGQLLLAKGEVEQASSAFKIVL 155 (1065)
Q Consensus 89 La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~------------~~~~~~~g~~~~~~g~~~~A~~~~~~al 155 (1065)
.+..|+.++.-+ +...++.|.+|...+.++.....+- ...+..++..+...|+|++++.....++
T Consensus 6 Va~aY~aLs~ae--~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 6 VAMAYMALSDAE--RQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHH--HHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344454444333 2234566667777777665443221 1234445555555566655555444443
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=18 Score=40.05 Aligned_cols=120 Identities=13% Similarity=0.009 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
+..|-..+..++...|..|......+.++...|.|+.+...+..+-.... ....+...+-+..+.+|+++.|...-.
T Consensus 305 ~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~---s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 305 IIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG---TTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc---CCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 66666666677777777777777777777777777777666654433221 122455556667777888888877766
Q ss_pred HHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1065)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1065)
-++. +.-....+...-+-....+|-++++..++.+++.++|..
T Consensus 382 ~~l~---~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLS---NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhc---cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 6654 222222333333444455677788888888888777653
|
|
| >KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.53 E-value=18 Score=42.27 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=14.2
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHHhc
Q 001509 656 NGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 656 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
+++..+++.-|.|.+ |.++...+|
T Consensus 750 FGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 750 FGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred ccceeEeecCcchHH----HHHHHhcCH
Confidence 555566667777654 555555554
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.48 E-value=20 Score=39.64 Aligned_cols=176 Identities=16% Similarity=0.027 Sum_probs=119.1
Q ss_pred ChHHHHHhhhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhC
Q 001509 569 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 648 (1065)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 648 (1065)
+.+....-|.+-+-.|+..+|.+.+..+....-+.....++.|...+.+.. .+..+|+.+|..+--.-
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al~~lD~aRLla 178 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATALKLLDQARLLA 178 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHHHHHHHHHHhC
Confidence 344444555555667888888888776655443334444444443322333 77888999999888888
Q ss_pred Ccch--HHHhHH-HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Q 001509 649 TSNL--YAANGA-GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 725 (1065)
Q Consensus 649 p~~~--~a~~~l-a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 725 (1065)
|... .+.... ..+....|+.+++..+-.+.+..+..|.|..+..-.|..+.+-+. .+. -...+..++..+....
T Consensus 179 PGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~-d~~--~~~~l~~~ls~~d~~~ 255 (421)
T PRK12798 179 PGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD-DEI--RDARLVEILSFMDPER 255 (421)
T ss_pred CchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc-ccc--cHHHHHHHHHhcCchh
Confidence 8843 344444 444468899999999999999999887776555555554444333 222 2233666666654444
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCC
Q 001509 726 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759 (1065)
Q Consensus 726 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 759 (1065)
...+|..+++.-.-.|+.+-|.-.-.+++.+...
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~ 289 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALKLADP 289 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999744
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.21 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1065)
+++.+|.++...|+++.|...|..+++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.22 Score=32.34 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 693 VWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
+++++|.++..+|+++.|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555555555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.9 Score=43.91 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhh------CCc-chHHHhHHHHHHHhcCCc-------HHHHHHHHHHHHHhcCCC-CCcchHHHHH
Q 001509 632 THLEKAKELYTRVIVQ------HTS-NLYAANGAGVVLAEKGQF-------DVSKDLFTQVQEAASGSV-FVQMPDVWIN 696 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~------~p~-~~~a~~~la~~~~~~g~~-------~~A~~~~~~~~~~~p~~~-~~~~~~~~~~ 696 (1065)
..++.|++.|.-++-. .|. -...+..+|++|-..|+. ..|+..|.++.+....+. ..+...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4556666666555432 221 356778889999998874 555555666655443211 1244678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 001509 697 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 737 (1065)
Q Consensus 697 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~~ 737 (1065)
+|.+..+.|++++|+.+|.+++..-..+. +..+..+++-.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s~-~~~l~~~AR~~ 210 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKASK-EPKLKDMARDQ 210 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHH
Confidence 99999999999999999999998633333 34555555443
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.06 E-value=19 Score=38.35 Aligned_cols=110 Identities=21% Similarity=0.076 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCh-
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-----GKYP- 570 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~- 570 (1065)
..-..++.+|...++|.+|+.+....+.. .+.-++.+..-...|....+...|...+..+-... |...
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQ 208 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQ 208 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHH
Confidence 34456888999999999999888777652 12335666777778888899999888887775532 2221
Q ss_pred -HHHHHhhhhhccccchHHHHHHHHHhhhcCCCC--ChHHHHhhH
Q 001509 571 -NALSMLGDLELKNDDWVKAKETFRAASDATDGK--DSYATLSLG 612 (1065)
Q Consensus 571 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--d~~~~~~lg 612 (1065)
.+-..-|.++..-.+|..|..+|-.+.+.+..- +..+..+|-
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLK 253 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLK 253 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHH
Confidence 233345777777889999999999999866542 234444443
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=18 Score=38.06 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=45.2
Q ss_pred chhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
....-+.+-+...+..+...-++....+++++|.+..++..++.--. .-..+|..+++++++.
T Consensus 183 ~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 183 FLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKA 245 (556)
T ss_pred ccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHH
Confidence 33444556666777778888888888899999998888888775332 2456777777777764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.96 E-value=10 Score=43.53 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=46.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HcCCCCCHHHH
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK-KAGEEVPIEVL 428 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~-~~~~~~~~~~~ 428 (1065)
..++..|.+++|...----+. ..-|..|+.-....=+++-|...|.++-.+. --.....+-. +.....|-+++
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~-~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLR-YLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccH-HHHHHHHHHHHHhcCCCchHHH
Confidence 445666666666443211111 1234455555555556666666666543221 0000111111 11122233333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 001509 429 NNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 429 ~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
++.++.-.|++.+|..+|.+.
T Consensus 638 --lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 638 --LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred --HHHHHHhhhhHHHHHHHHHHc
Confidence 467777788888888888764
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.3 Score=51.36 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001509 824 THVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 861 (1065)
Q Consensus 824 ~~~~~~~~~l~~~~~~~~~~~~~e~~~~~k~e~~~~~~ 861 (1065)
.+++....+|.+.++.-+++++++++...+.++.++.+
T Consensus 214 Kgv~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ 251 (1064)
T KOG1144|consen 214 KGVRAMQEALAKRQEEEERQKREEEERLRREEEEERRR 251 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444444444333444444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.70 E-value=27 Score=39.35 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=133.7
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHhhh
Q 001509 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 499 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
|.+...+..+..++....+..--..++.+++... .+--+++.++.+|... ..+.-..++++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344555566666666666666667777777654 4467888999999988 5567788899999999888888888888
Q ss_pred hhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCcc--hHHHh
Q 001509 579 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN--LYAAN 656 (1065)
Q Consensus 579 ~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~a~~ 656 (1065)
.|.+ ++...+..+|.+++...-+....+ .+-.+ +.+....-. .+.+.-+....++-...... ..++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~--~i~ev-WeKL~~~i~-------dD~D~fl~l~~kiqt~lg~~~~~Vl~q 209 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNA--AIKEV-WEKLPELIG-------DDKDFFLRLQKKIQTKLGEGRGSVLMQ 209 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhh--hHHHH-HHHHHHhcc-------ccHHHHHHHHHHHHHhhccchHHHHHH
Confidence 8777 888999999999876432211110 11111 222211000 23333333333333222221 11222
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 736 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~lg~~ 736 (1065)
.+-.-|....++.+|+.++..+++.+. .+..+.-++...+.. ++......+-|.....+
T Consensus 210 dv~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~lRd----------------~y~~~~~~e~yl~~s~i 268 (711)
T COG1747 210 DVYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENLRD----------------KYRGHSQLEEYLKISNI 268 (711)
T ss_pred HHHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHHHH----------------HhccchhHHHHHHhcch
Confidence 222334455677777777777776653 233333333222211 22223333334444444
Q ss_pred HHHhhcHHHHHHHHHHHHHhCCCCcchH
Q 001509 737 HYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 737 ~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
-..-.++.+|..-|.+.++.+..|-..+
T Consensus 269 ~~~~rnf~~~l~dFek~m~f~eGnFVfH 296 (711)
T COG1747 269 SQSGRNFFEALNDFEKLMHFDEGNFVFH 296 (711)
T ss_pred hhccccHHHHHHHHHHHheeccCceEEe
Confidence 4455677889999999999988875543
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.41 Score=49.35 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=70.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001509 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
|.+.....|+++..|...+......|-|.+--..|.+++..+|.+ ...|.. .+.-+...++++.+...|.++++.+|.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 344445567888888888888888888888888999999999988 555554 566677888999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 001509 230 NVEALVALAVMD 241 (1065)
Q Consensus 230 ~~~a~~~la~~~ 241 (1065)
++..|...-.+.
T Consensus 175 ~p~iw~eyfr~E 186 (435)
T COG5191 175 SPRIWIEYFRME 186 (435)
T ss_pred CchHHHHHHHHH
Confidence 888877655443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.60 E-value=7.5 Score=36.30 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1065)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1065)
.+......-...++..++..++..+--+.|+. ..+.+.-|.++...|++.+|+..|+.+....+..+.+.-.++.++..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~-~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL-KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 44455555566888888888888888888888 66678888888888888888888888887777777777777777777
Q ss_pred ccc
Q 001509 244 ANE 246 (1065)
Q Consensus 244 ~~~ 246 (1065)
.|+
T Consensus 91 l~D 93 (153)
T TIGR02561 91 KGD 93 (153)
T ss_pred cCC
Confidence 776
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.59 E-value=4.2 Score=46.36 Aligned_cols=128 Identities=23% Similarity=0.156 Sum_probs=97.3
Q ss_pred HHHHHHHHHhhcCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H
Q 001509 112 LATQYYNKASRIDMHEPSTWVG--KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-A 188 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~--~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-a 188 (1065)
-++..+...+.++|.++..++. +...+...+....+.-.+..++..+|.+..+...+|.+....|....++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566666667788888876544 477777788888999999999999999999999999988888777766666555 7
Q ss_pred HHhCCCCchHHHH------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001509 189 LQVHPSCPGAIRL------GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1065)
Q Consensus 189 l~~~p~~~~~~~~------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1065)
....|.+ ..... .++..+..+|+..++.....+++.+.|.++.....+...
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDN-AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcch-HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 7778887 33333 357777888888888899999999988886654444433
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.45 E-value=32 Score=39.82 Aligned_cols=278 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 503 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 503 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
.++.+-|.-..+..+|..++++|...+...|.+ ......++.||....+.+.|.++++++-+.+|.++.....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Q ss_pred hhhhccccchHHHHHHHHHhhhcCCCCChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHHHHhhCCc---chH
Q 001509 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS---NLY 653 (1065)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~ 653 (1065)
..+...-+.-.+|+.....................+.- +...--+.++....-.+.. ...
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~-----------------~~PTt~lsv~~~l~~~n~Q~I~sE~ 497 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAE-----------------CKPTTDLSVQGLLMIFNSQTISSES 497 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhc-----------------CCCchHHHHHHHHHHHhcchhhhcc
Q ss_pred HHhHHHHHHHhcCCcHHHHHHHHHHHH-------HhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc
Q 001509 654 AANGAGVVLAEKGQFDVSKDLFTQVQE-------AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 726 (1065)
Q Consensus 654 a~~~la~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 726 (1065)
+...+++.+..+-...-|.+..-.++- ... +...-+..+-.|+-+.---.-....|+.=.......--
T Consensus 498 ~~~~l~~~~~~q~~v~~~~~e~L~F~L~~~~~~~~~~-----~ka~e~~~~~~Cln~~~~~~FGe~~~~~E~~~nE~~WF 572 (872)
T KOG4814|consen 498 SSQTLSILYTLQMIVKVSEEEPLEFFLNYLPTVQKLL-----QKAVEFLKTVKCLNQLPPDVFGEAIYQQEVAVNEIEWF 572 (872)
T ss_pred hHHHHHHHhHHHHHHHHHHHhHHHHHHhhccchhHHH-----HHHHHHHHHHHHHhhcCCchhhhHHHHHHhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CCCCc------chHHHHHHHhhHHHH-HHHhhhcCCHHHHHHHHHHH
Q 001509 727 AQILLYLARTHYEAEQWQDCKKSLLRAIHL---APSNY------TLRFDAGVAMQKFSA-STLQKTRRTADEVRSTVAEL 796 (1065)
Q Consensus 727 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~~---~P~~~------~~~~nla~~~~~~~~-~~l~~~~~~~~~~~~a~~~l 796 (1065)
..+-..||.-+.+-..++-..++++-+.+. -|.|. .++--.+++++-... +.-.+..-+-++..-+-..|
T Consensus 573 a~T~WNLav~C~Kd~~~e~~~EF~~L~~~f~~~ip~D~~~~~~~~I~R~~~L~~~~~IaLEk~~K~~~~~~Q~~~~se~L 652 (872)
T KOG4814|consen 573 ASTSWNLAVKCLKDQSCESISEFPQLCIQFIDLIPVDDFTMYHFTIWRFKALILQLIIALEKAKKDQHQKDQDIYESEEL 652 (872)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHccCCcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHH
Q 001509 797 ENAVRV 802 (1065)
Q Consensus 797 ~~a~~~ 802 (1065)
.+.+.+
T Consensus 653 ~~s~~~ 658 (872)
T KOG4814|consen 653 VNSINV 658 (872)
T ss_pred Hhhhhh
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.5 Score=37.90 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.7
Q ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCcH
Q 001509 663 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 727 (1065)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 727 (1065)
...|++..|++.+.+..+....+.... ...+++++|.++...|++++|+..++.+++......|.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~ 77 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDR 77 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCH
Confidence 356888888888888777665432211 24567788888889999999999999998877666663
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.29 E-value=22 Score=37.57 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHHH
Q 001509 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 106 k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~la~~~~~~g~~~~Al~ 183 (1065)
+..-...|+.+- +.-...-.+|..+..+|..++..|++..|..+|-.. +++.+.. .+-
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll-------------- 128 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLL-------------- 128 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHH--------------
Confidence 344455666665 333333356788888888888888887777766422 1111111 111
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC----------C-HHH-HHHHHHHHHHccch
Q 001509 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL----DPE----------N-VEA-LVALAVMDLQANEA 247 (1065)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~----------~-~~a-~~~la~~~~~~~~~ 247 (1065)
+.......|.............|..+++...|...+...++. .|. . +.. ...+-...+..++.
T Consensus 129 -~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~ 207 (260)
T PF04190_consen 129 -EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL 207 (260)
T ss_dssp -HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H
T ss_pred -HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH
Confidence 111222334442222333344577889999888877766655 332 2 211 11122222333333
Q ss_pred HhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001509 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1065)
Q Consensus 248 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1065)
..+..-...|...++.+|.....+..+|..||..
T Consensus 208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHTHH---HHHHTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCccccccHHHHHHHHHHHHHHCCC
Confidence 3345555555655666666666677777777653
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=20 Score=41.39 Aligned_cols=180 Identities=16% Similarity=0.076 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCchHHHHHHHH
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGL 205 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~ 205 (1065)
+.++..+...|++.+|..+|.+.-..+.. ...-++-.+.-+...|..++-..+.++-..-. -+.|. ..+.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk----aAAE 711 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK----AAAE 711 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH----HHHH
Confidence 45677777778888888777653211100 01123445555666666665555444432221 11111 2356
Q ss_pred HHHHcCCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 206 CRYKLGQLGKARQAFQ----------RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1065)
Q Consensus 206 ~~~~~g~~~~A~~~~~----------~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 275 (1065)
++...|+..+|+...- -+-+++....+.+..++..+..... +--|-+.|.++-. ...+.
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~---~gLAaeIF~k~gD--------~ksiV 780 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS---PGLAAEIFLKMGD--------LKSLV 780 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc---cchHHHHHHHhcc--------HHHHh
Confidence 6677777777765331 1122222333333333333333322 2333333332211 11233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1065)
.++...++|.+|..+.++. +.....+|+..|+.+....+|++|.+.|.++.
T Consensus 781 qlHve~~~W~eAFalAe~h------Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKH------PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hheeecccchHhHhhhhhC------ccccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 4455566666666655543 22334566666666666666666666555543
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.7 Score=51.24 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=51.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHH
Q 001509 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1065)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1065)
..+.+..|+..|.+++...|.....+...|.++.+. |+.-.|+.....+++++|.. ..+++.++.++..++.+.+|
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHHHh
Confidence 334455566666666666666666666665555554 33444555555566666655 44566666666666666666
Q ss_pred HHHHHHHHHhCCC
Q 001509 217 RQAFQRALQLDPE 229 (1065)
Q Consensus 217 ~~~~~~al~~~p~ 229 (1065)
+.+...+....|.
T Consensus 465 l~~~~alq~~~Pt 477 (758)
T KOG1310|consen 465 LSCHWALQMSFPT 477 (758)
T ss_pred hhhHHHHhhcCch
Confidence 6666555555553
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=26 Score=36.93 Aligned_cols=193 Identities=15% Similarity=0.065 Sum_probs=102.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1065)
+.+....++..+...-+..-..+++++|....+++.|+.-.... +.+|...++++++....+ +.-.+....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~----yr~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETI----YRQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHH----HhhHHHHhh
Confidence 44556667777777788888888999999998888888655544 777888888877653211 111111111
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHH
Q 001509 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1065)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1065)
.|...+|.. +. +......+-..++.|..++|+..+|++.+....+.++. .....++-++...+....-|..
T Consensus 259 ~~~~~da~~------rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQL------RR--DTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhhh------hc--ccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 00 01112234456888889999999999999888874431 1111223334444444433333
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHH-------------HcC---CHHHHHHHHHHHHHhCCCcHH
Q 001509 361 ALTNFEKVLEI-YPDNCETLKALGHIYV-------------QLG---QIEKAQELLRKAAKIDPRDAQ 411 (1065)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~-------------~~g---~~~~A~~~~~~al~~~p~~~~ 411 (1065)
...++-+.-.+ -|.+....+.-+.+-. +.| --..|++.+.++.+.+|.-+.
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcH
Confidence 22222222111 1333222222221111 111 123578888899999998775
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=90.32 E-value=27 Score=36.93 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHh
Q 001509 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576 (1065)
Q Consensus 499 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 576 (1065)
..++..+..+|..|.+.|++.+|..+|-.. ++...... +... ....-.|.....+...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~---------------~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEE---------------WSTKGYPSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHH---------------HHHHTSS--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHH---------------HHHhcCCcchhHHHHH
Confidence 347889999999999999999888777532 22222211 1111 1122334445555544
Q ss_pred hh-hhccccchHHHHHHHHHhhhc----CCC--------CChHHHHhhHHHHHHHHHhhhhcChhHHhhhHHHHHHHHHH
Q 001509 577 GD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 643 (1065)
Q Consensus 577 ~~-~~~~~g~~~~A~~~~~~al~~----~~~--------~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 643 (1065)
+. -|+..++...|...+....+. .|. ...+.+++...+ ......... ...+..-.+.|+.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~~ 219 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYKP 219 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhCc
Confidence 44 355667888887766655543 221 122233333333 222211111 1456666666777
Q ss_pred HHhhCCcchHHHhHHHHHHHhc
Q 001509 644 VIVQHTSNLYAANGAGVVLAEK 665 (1065)
Q Consensus 644 ~l~~~p~~~~a~~~la~~~~~~ 665 (1065)
.|..+|.-...+..+|.+|+..
T Consensus 220 ~L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 220 SLKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp ---HHHHTHHHHHHHHHHHH--
T ss_pred cccccHHHHHHHHHHHHHHCCC
Confidence 7777777777788888888753
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.21 E-value=26 Score=38.51 Aligned_cols=163 Identities=9% Similarity=0.018 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001509 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA------------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 177 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~------------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 177 (1065)
..++.+=.+.+..+|....+|..+-.++.. +.-++.-+.+...+++.+|+...+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 367777778888899888777765433322 2235666777888899999999999999999887765
Q ss_pred -hHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------cc-
Q 001509 178 -YSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 246 (1065)
Q Consensus 178 -~~~Al~~~~~al~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 246 (1065)
+..=++++.++++.+|.+-..+.+..-.+-. ......+=+.+..+++.-++.|..+|.....+.... |.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5788899999999999883332222222211 212255667788888888999999988877766532 20
Q ss_pred --hHhHHHHHHHHHHHHHhCCCCHHHHHH
Q 001509 247 --AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1065)
Q Consensus 247 --~~~~~~A~~~~~~al~~~p~~~~~~~~ 273 (1065)
..-+..-+.....++-.+|++..+|+.
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122445555666666667777666654
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.19 E-value=11 Score=43.13 Aligned_cols=134 Identities=16% Similarity=0.032 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001509 145 EQASSAFKIVLEADRDNVPALLG--QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1065)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~--la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1065)
.-++..+...+..+|.++..++. +...+...+....+...+..++..+|.+ ..++..+|......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~ 126 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISE 126 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33566666666678888776544 3666777788889999999999999999 55678888887777777766666655
Q ss_pred -HHHhCCCCHHHHHHH------HHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001509 223 -ALQLDPENVEALVAL------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1065)
Q Consensus 223 -al~~~p~~~~a~~~l------a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1065)
+....|.+......+ +.+....+. ..++...+.++....|.++.+...+.......-
T Consensus 127 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~c 190 (620)
T COG3914 127 IAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPKYPRVLGALMTARQEQC 190 (620)
T ss_pred HHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhc
Confidence 888889888776655 555555566 777778888888888888777666655544333
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.46 Score=47.01 Aligned_cols=58 Identities=29% Similarity=0.479 Sum_probs=37.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001509 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1065)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1065)
....++.+.|.++|.+++.+.|.. ..-|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 445566666666666666666666 5556666666666666666666666666666654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.95 E-value=26 Score=36.26 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHH-
Q 001509 309 YNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDNCETL- 379 (1065)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~- 379 (1065)
..++.+++..|.|.+|+......+..+. +.+.....+..-..+|....+..++...+..+-.. .|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3455666666777777666666554332 33444555555666666666666666555544322 12211111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 380 -KALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 380 -~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
..-|.+++...+|.-|..+|-.+++-
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhc
Confidence 12244445556677777777766654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.7 Score=32.61 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 001509 692 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 721 (1065)
Q Consensus 692 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 721 (1065)
.++.++|.+|..+|++++|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888888888888888888653
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.3 Score=34.60 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhhcHHHHHHHHHH
Q 001509 694 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 752 (1065)
Q Consensus 694 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~k 752 (1065)
...-|.-++.+.+..+|+..+.+++++.+++++ ..++-+|..+|...|++.+.+.+...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566888999999999999998776665 67788889999999999998877543
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=60 Score=39.41 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001509 501 KVTVLFNLARLLEQIHDTVAASVLYRLIL 529 (1065)
Q Consensus 501 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 529 (1065)
.....|.+|+.+...|+.++|..+|..+.
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55677788888777888888888888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.72 E-value=10 Score=43.39 Aligned_cols=131 Identities=18% Similarity=0.127 Sum_probs=63.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHH
Q 001509 136 QLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1065)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 214 (1065)
...+..|+++.+....... ..-|.- ..-....+..+..+|.++.|+.+... +..++.+ ..++|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~rFeL---Al~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PDHRFEL---ALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHHHhHH---HHhcCCHH
Confidence 3444566777765555311 111211 23344555566666666666654321 2334433 34667776
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
.|...... .+++..|..||...+..|+ ++-|..+|.++-. +..|..+|...|+.+...++...+
T Consensus 336 ~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 336 IALEIAKE-----LDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHCCC-----CSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHh-----cCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 66654432 3356677777777777777 6666666665422 234445555566655555554444
Q ss_pred H
Q 001509 295 L 295 (1065)
Q Consensus 295 l 295 (1065)
.
T Consensus 400 ~ 400 (443)
T PF04053_consen 400 E 400 (443)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.83 Score=45.28 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001509 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1065)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1065)
.....++.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34456677777777777777777777777777777777777777777777777777766
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.74 Score=47.59 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=72.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001509 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPS 194 (1065)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1065)
.|.++....|+++..|...+......|-|.+--..|.+++..+|.|+..|.. -+.-++..+++..+...|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444555678999999999998889999999999999999999999999977 556678889999999999999999999
Q ss_pred CchHHHH
Q 001509 195 CPGAIRL 201 (1065)
Q Consensus 195 ~~~~~~~ 201 (1065)
+ +.+|+
T Consensus 175 ~-p~iw~ 180 (435)
T COG5191 175 S-PRIWI 180 (435)
T ss_pred C-chHHH
Confidence 9 44444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.93 E-value=2.7 Score=46.92 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1065)
......|+..|.+++...|.....+..++.+++.. |+.-.|+.-+-.+++++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44556899999999999999999999999888876 566778888888999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001509 184 FYKRALQVHPSC 195 (1065)
Q Consensus 184 ~~~~al~~~p~~ 195 (1065)
+...+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 999888888866
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.81 E-value=4.9 Score=50.37 Aligned_cols=150 Identities=16% Similarity=0.102 Sum_probs=117.8
Q ss_pred HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 001509 256 KMQ-RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1065)
Q Consensus 256 ~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1065)
.+. ....+.|.....+..|+.++...|++++|+....++.-. ....+.....+.+++...+..++...|+..+.
T Consensus 960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ 1039 (1236)
T KOG1839|consen 960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLN 1039 (1236)
T ss_pred HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHH
Confidence 555 334567888999999999999999999999988877632 33457778889999999999999999999998
Q ss_pred HHHHhc-----CCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHH
Q 001509 330 ASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLGQIEKAQ 396 (1065)
Q Consensus 330 ~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~ 396 (1065)
++.... +..|.......+++.++...+.++.|+.+++.++..+. .+...+..++.++...+++..|+
T Consensus 1040 ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1040 RALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred HHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 887643 24566677778899999999999999999999988532 13456667777777778887777
Q ss_pred HHHHHHHHh
Q 001509 397 ELLRKAAKI 405 (1065)
Q Consensus 397 ~~~~~al~~ 405 (1065)
...+....+
T Consensus 1120 ~~ek~t~~i 1128 (1236)
T KOG1839|consen 1120 EHEKVTYGI 1128 (1236)
T ss_pred HHHhhHHHH
Confidence 776665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.2 Score=29.90 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001509 38 APLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1065)
Q Consensus 38 ~~~~~~~~~a~~y~~~g~~~~A~~~l~~~ 66 (1065)
++.-.|..+...|++.|++++|+++|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45568999999999999999999999976
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.34 E-value=50 Score=36.23 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHHhhCC---------cchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHH
Q 001509 632 THLEKAKELYTRVIVQHT---------SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINLAHVY 701 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p---------~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~lg~~~ 701 (1065)
+.+++|..+-...+.... -....|+.+..++...|+...-...+...+.... ++...........|-..|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 778888877766554311 1233456666677777887776666666655443 111112223344456778
Q ss_pred HHcCCHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCCCCcchHH
Q 001509 702 FAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 765 (1065)
Q Consensus 702 ~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 765 (1065)
...+.|+.|-....+.. ||... .+..+|++|++..-+++|..|.++|-.|+...|++..+-|
T Consensus 220 L~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf 285 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGF 285 (493)
T ss_pred hhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhH
Confidence 88899999988866654 22221 2778899999999999999999999999999998655544
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=83 Score=38.22 Aligned_cols=316 Identities=9% Similarity=-0.020 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHH
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a 120 (1065)
..++.-|...++.|++..+..+...+...... ..+-+..+..+-.. ....-+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~--------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLY--------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcH--------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 56788899999999999998888876332211 11222222111111 012244556
Q ss_pred hhcCCCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 001509 121 SRIDMHEPSTWVGKGQLLL---AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1065)
Q Consensus 121 ~~~~p~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1065)
+..+|+.|..-..+..... ..+++..-+.+ ....|.+....+..+......|+-.+|......+....... +
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~----~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~-p 163 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAF----SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSL-P 163 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-C
Confidence 6777888766655544433 34455544442 22347777777788888889999888877777765544332 1
Q ss_pred HHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccchHhHHHHHHHHH
Q 001509 198 AIRLGI------------------GLCRYKLGQLGKARQAFQRALQLDPENVEALV-ALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 198 ~~~~~l------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
...-.+ ....+..|+...|......+ .+ ....+. .+..++. + ...+..
T Consensus 164 ~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l---~~-~~~~~a~a~~al~~---~---p~~~~~--- 230 (644)
T PRK11619 164 NACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL---PA-DYQTIASALIKLQN---D---PNTVET--- 230 (644)
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc---Ch-hHHHHHHHHHHHHH---C---HHHHHH---
Confidence 212222 22233334444333332221 11 111100 0001100 0 111111
Q ss_pred HHHHhC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 001509 259 RAFEIY-PYCA-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (1065)
Q Consensus 259 ~al~~~-p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 335 (1065)
.+... |... .....++..-+...+.+.|..++..........+ ....+...+|......+...+|..++..+....
T Consensus 231 -~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~ 309 (644)
T PRK11619 231 -FARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS 309 (644)
T ss_pred -HhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc
Confidence 11111 2211 1122333334456666778777776543322111 222334445544444433567777777654321
Q ss_pred CCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001509 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1065)
Q Consensus 336 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 404 (1065)
......-....+.+..+++..+...+..+-..........+-+|..+...|+.++|..+|+++..
T Consensus 310 ----~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 310 ----QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ----CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 11122223334555788888887777776444445677888899998889999999999999754
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.81 E-value=0.3 Score=57.09 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=6.2
Q ss_pred HHHHHHHHHhh
Q 001509 798 NAVRVFSHLSA 808 (1065)
Q Consensus 798 ~a~~~~~~l~~ 808 (1065)
+|+..|.++..
T Consensus 1258 ~aIh~FD~ft~ 1268 (1516)
T KOG1832|consen 1258 EAIHRFDQFTD 1268 (1516)
T ss_pred HHHhhhhhhee
Confidence 55666665553
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.69 E-value=54 Score=35.98 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHh--CC--CcHH
Q 001509 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--YP--DNCE 377 (1065)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p--~~~~ 377 (1065)
+..|+.+..+|...|+...-..++...+.... ...........+-.+|+..+.|+.|-....+..-- .. ..+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 35677777778888876666666655554221 22223334555677888888888888777665411 11 2256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001509 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 409 (1065)
.++.+|.+..-+++|..|..++-.++...|..
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 77788999999999999999999999999873
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=86.56 E-value=4 Score=44.31 Aligned_cols=108 Identities=13% Similarity=0.009 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCcCCCCchhHHHHHHH
Q 001509 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509 (1065)
Q Consensus 430 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 509 (1065)
.=|..++++++|..|..-|..++++|.....+........ -+.......+-..+.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~-------------------------~di~~vaSfIetklv 235 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASA-------------------------EDISSVASFIETKLV 235 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCh-------------------------hhHHHHHHHHHHHHH
Confidence 3366788899999999999999987754333322111000 000111233455788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
.||..+++.+.|+....+.+..+|.++.-+++.|.++....+|.+|.+.+--+
T Consensus 236 ~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998887665543
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.45 E-value=8.5 Score=48.39 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=117.2
Q ss_pred hhhHHHHHHHcCCHHHHHH------HHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001509 345 YYGLGQVQLKLGDFRSALT------NFEKVL-EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 417 (1065)
....|+.....|.+.+|.+ ++.... .++|.....+..++.++...|++++|+.+-.++.-+.....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~------- 1007 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL------- 1007 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc-------
Confidence 3445666677777777777 555333 45788899999999999999999999998877765432110
Q ss_pred HcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccchhhhcccccchhhhhhhhhHHHhhhhhhhhhcccCCCCc
Q 001509 418 KAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 495 (1065)
Q Consensus 418 ~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 495 (1065)
+... ....+.+++...+..++...|+..+.++...-. ....
T Consensus 1008 --g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~-----------------------------------Ls~g 1050 (1236)
T KOG1839|consen 1008 --GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL-----------------------------------LSSG 1050 (1236)
T ss_pred --cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc-----------------------------------cccC
Confidence 1111 124577888888888898999998888876311 0011
Q ss_pred CCCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 496 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 562 (1065)
Q Consensus 496 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~g~~~~A~~~~~~a 562 (1065)
...|....+..+++.++...+.++.|+.+.+.++..... +..++..++.+....+++..|....+..
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 146667777788888888889999999999998874322 2345555555555555555555444443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.25 E-value=1.5 Score=30.29 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001509 692 DVWINLAHVYFAQGNFALAMKMYQNCLRK 720 (1065)
Q Consensus 692 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 720 (1065)
+++..||.+-+..++|.+|+.-|++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.6 Score=30.63 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 001509 728 QILLYLARTHYEAEQWQDCKKSLLRAIHL 756 (1065)
Q Consensus 728 ~~~~~lg~~~~~~g~~~~A~~~~~kal~~ 756 (1065)
.++..||.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999876
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.28 E-value=31 Score=39.58 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHh
Q 001509 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1065)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1065)
......|+++.++.... .-.+-|.-+......++..+.+.|.++.|+..-. ++...+.| .+..|+
T Consensus 269 k~av~~~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~--- 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGN--- 333 (443)
T ss_dssp HHHHHTT-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT----
T ss_pred HHHHHcCChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCC---
Confidence 34456778888776664 1223344445556777788888888777775432 23333333 344455
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1065)
++.|.+... ..+++..|..||......|+++-|...+.++
T Consensus 334 L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 334 LDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 444444332 2234555555555555555555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=85.00 E-value=6.2 Score=34.11 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=30.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001509 138 LLAKGEVEQASSAFKIVLEADRD---------NVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1065)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1065)
.+..|+|..|++.+.+.+..... ...+++.+|.++...|++++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44566666665555555433211 12445556666666666666666666666554
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.86 E-value=70 Score=35.62 Aligned_cols=151 Identities=17% Similarity=0.048 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001509 250 IRKGMEKMQRAFEIYPYCA---MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1065)
Q Consensus 250 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1065)
...|+..|..+--..|... .++..-..+....|+.+++..+..+.+....+++...+.+..++..+...++-. -..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~ 242 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDA 242 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHH
Confidence 5555555555555555432 222233334455566666666655555555555554455544444444443221 112
Q ss_pred HHHHHHHhcCCCCCchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001509 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD----NCETLKALGHIYVQLGQIEKAQELLRKA 402 (1065)
Q Consensus 327 ~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 402 (1065)
.+..++..+ ..+.....|+.++..-.-.|+.+-|.-.-.+++.+... ...+.+..+....-..+++.++..+..+
T Consensus 243 ~l~~~ls~~-d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 243 RLVEILSFM-DPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHhc-CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 244444433 33444567888888888888888888888888876422 2334444444444556677776666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.71 E-value=7.3 Score=38.53 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=58.9
Q ss_pred CcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHhhcHH
Q 001509 667 QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQ 744 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~lg~~~~~~g~~~ 744 (1065)
.-..|...|-++-. .+..+++...+.||..|. ..+..+|+..|-+++...... .++.++..|+.++++.|+++
T Consensus 121 ~d~~A~~~fL~~E~----~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 121 GDQEALRRFLQLEG----TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred CcHHHHHHHHHHcC----CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34566665554432 223478899999998887 578999999999999986544 35999999999999999999
Q ss_pred HHHH
Q 001509 745 DCKK 748 (1065)
Q Consensus 745 ~A~~ 748 (1065)
.|.-
T Consensus 196 ~AYi 199 (203)
T PF11207_consen 196 QAYI 199 (203)
T ss_pred hhhh
Confidence 8753
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=84.67 E-value=43 Score=35.10 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhh
Q 001509 667 QFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAE 741 (1065)
Q Consensus 667 ~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~lg~~~~~~g 741 (1065)
.....++++.++.......... -...+...+|..|+..|++++|+.+|+.+...|....- ..++..+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3345566666666655422111 23346678999999999999999999999887754432 677888899999999
Q ss_pred cHHHHHHHHHHHH
Q 001509 742 QWQDCKKSLLRAI 754 (1065)
Q Consensus 742 ~~~~A~~~~~kal 754 (1065)
+.+..+.+.-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9998877765543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.57 E-value=1e+02 Score=37.29 Aligned_cols=112 Identities=15% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhhHHHHHHHc
Q 001509 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1065)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1065)
.+++.+..|.-|+.+.+.--. ........+...|..++..|++++|...|-+.+..+. |..+. .-+...
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi------~kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVI------KKFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHH------HHhcCH
Confidence 445555566666665544211 1122345667778888889999999988888875431 22111 122333
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001509 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1065)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1065)
.....-..+++.+.+..-.+..--..|-.+|.++++.++-.++
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHH
Confidence 3444455566666655444455555667777777776554443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.38 E-value=5.3 Score=41.44 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001509 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1065)
+..|..+..+.+.++|.++.-+.-+|.+|.+.|.+.-|+..+...+...|+.+.+-...+.
T Consensus 197 ~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 197 WELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3366666666666777666666666777777777777777776666666666655544433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.20 E-value=6.5 Score=38.85 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhC-CcchHHHhHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHcCCHHHHHH
Q 001509 634 LEKAKELYTRVIVQH-TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 712 (1065)
Q Consensus 634 ~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 712 (1065)
-+.|...|-++-... -+++...+.||..|. ..+..+|+.++.++++..+.+.. -+|+++..|+.+|+.+|+++.|--
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-FNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcchhhhhh
Confidence 345555555443321 136677777777776 56777888888888887764422 368888888888888888887753
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.99 E-value=7.4 Score=45.45 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 001509 849 QNRQRQEAARQAA 861 (1065)
Q Consensus 849 ~~~~k~e~~~~~~ 861 (1065)
++|+++|++|+.+
T Consensus 358 kererqEqErk~q 370 (1118)
T KOG1029|consen 358 KERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.83 E-value=1.6 Score=27.22 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 001509 693 VWINLAHVYFAQGNFALAMKMY 714 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~ 714 (1065)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555555555554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.72 E-value=21 Score=37.67 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1065)
++..++..+...|+++.+...++..+..+|.+-.+|..+-.+|+..|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555666666666666667777776666776666666666666777777777666666655
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.61 E-value=10 Score=31.06 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccchHhHHHHHHHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~ 257 (1065)
+..|.-++...+..+|+..|.++++..++....+..||.+.....+.+.+.+.+.+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666667777777777777777666666655554443333333355555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=83.15 E-value=21 Score=39.10 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC--------CC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 166 LGQACVEFNRGRYSDSLEFYKRALQVHP--------SC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p--------~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+.-|..++++++|..|..-|..+|++.. .. ...+--.+..||+.+++.+.|+....+.+.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3345566777777777777777666531 11 012334578899999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccchHhHHHHHHH
Q 001509 229 ENVEALVALAVMDLQANEAAGIRKGMEK 256 (1065)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~A~~~ 256 (1065)
.+...++..+.+.....+ |.+|-..
T Consensus 260 ~~frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred chhhHHHHHHHHHHHHHH---HHHHHHH
Confidence 888888777777776666 6655543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.85 E-value=7.4 Score=41.00 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=60.8
Q ss_pred CchhhhhhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001509 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1065)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 405 (1065)
.+..++..++..+...|+++.++..++..+..+|.+-..|..+...|...|+...|+..|+++-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999999999999999988764
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=82.82 E-value=35 Score=35.39 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q 001509 540 LRLAAIAKARNNLQLSIELVNEALKVNG 567 (1065)
Q Consensus 540 ~~la~~~~~~g~~~~A~~~~~~al~~~p 567 (1065)
..++.+....|++++.+.++++++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 4455555566666666666666665544
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=82.09 E-value=4.5 Score=27.61 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=6.4
Q ss_pred HHHHHHHHcCChHHHHHH
Q 001509 167 GQACVEFNRGRYSDSLEF 184 (1065)
Q Consensus 167 ~la~~~~~~g~~~~Al~~ 184 (1065)
.+|..+...|+|++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.77 E-value=1.3e+02 Score=36.46 Aligned_cols=214 Identities=7% Similarity=-0.044 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCC-chhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHhh
Q 001509 44 LIIAREYFKQGKVEQFRQILEEGSSP-EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR 122 (1065)
Q Consensus 44 ~~~a~~y~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~ 122 (1065)
..-|...|++|++++|+..|-+.+.. ++. +. ..-|+... ....-..+++...+
T Consensus 372 ~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~V-------------i~kfLdaq-----------~IknLt~YLe~L~~ 425 (933)
T KOG2114|consen 372 RKYGDYLYGKGDFDEATDQYIETIGFLEPS--EV-------------IKKFLDAQ-----------RIKNLTSYLEALHK 425 (933)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcccCChH--HH-------------HHHhcCHH-----------HHHHHHHHHHHHHH
Confidence 55666777888888888877766543 111 10 00011000 11123333444443
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchHHH
Q 001509 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1065)
Q Consensus 123 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1065)
..-.+.+-...+-.+|.+.++.++-.++.+ ..+.-... .-..-.++...+-+++|.-+-.+.- .+ ..
T Consensus 426 ~gla~~dhttlLLncYiKlkd~~kL~efI~----~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~----~h-e~-- 494 (933)
T KOG2114|consen 426 KGLANSDHTTLLLNCYIKLKDVEKLTEFIS----KCDKGEWFFDVETALEILRKSNYLDEAELLATKFK----KH-EW-- 494 (933)
T ss_pred cccccchhHHHHHHHHHHhcchHHHHHHHh----cCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc----cC-HH--
Confidence 333333444455667777777665443333 22211000 0111123444444555544433321 12 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccchHhHHHHHHHHHHHHHhCC--CCHHH----HHH
Q 001509 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMA----LNY 273 (1065)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~----~~~ 273 (1065)
.+-.++..+|+|.+|+.++.. +.|... ......|..++... .++-+..+-+.+...- ..... ...
T Consensus 495 -vl~ille~~~ny~eAl~yi~s---lp~~e~l~~l~kyGk~Ll~h~----P~~t~~ili~~~t~~~~~~~~~~~s~~~~~ 566 (933)
T KOG2114|consen 495 -VLDILLEDLHNYEEALRYISS---LPISELLRTLNKYGKILLEHD----PEETMKILIELITELNSQGKGKSLSNIPDS 566 (933)
T ss_pred -HHHHHHHHhcCHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhhC----hHHHHHHHHHHHhhcCCCCCCchhhcCccc
Confidence 234556778899999988876 344332 33555666666543 4444444444443221 11000 011
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 001509 274 LANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1065)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 302 (1065)
+-.+....+++.....+++......+..+
T Consensus 567 ~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 567 IEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred hhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 22333445555555555555444444333
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=81.65 E-value=4.9 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcHHHHHHH
Q 001509 730 LLYLARTHYEAEQWQDCKKS 749 (1065)
Q Consensus 730 ~~~lg~~~~~~g~~~~A~~~ 749 (1065)
++.+|-.++.+|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=81.36 E-value=44 Score=38.20 Aligned_cols=173 Identities=16% Similarity=0.078 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH-HH-HHHHHHHHHHHHHHhchhhh---hhhhhHHHHHHHHHHH
Q 001509 43 WLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR-YE-RIAILNALGVYYTYLGKIET---KQREKEEHFILATQYY 117 (1065)
Q Consensus 43 ~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~-~~-~~~~l~~La~~y~~~g~~~~---~~~~k~~~~~~A~~~~ 117 (1065)
.-.+|..+|-.|+|+-|..+|+.+... |..++ .. -+.++-..|.+.+..+.... .+..-+..++.|...|
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~D-----f~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKD-----FKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHH-----HhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 357999999999999999999987432 32221 11 12334444555555554322 1223346778888888
Q ss_pred HHHh----hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----CHHHHHHHHHHH--HHcCChHHHHHH
Q 001509 118 NKAS----RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRD-----NVPALLGQACVE--FNRGRYSDSLEF 184 (1065)
Q Consensus 118 ~~a~----~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----~~~a~~~la~~~--~~~g~~~~Al~~ 184 (1065)
.+.- ...+.-..+.+..+.++...|.+.+|...+-++... ..+ .+..+-..|.++ ........-..-
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh
Confidence 8842 222233456666777888888887777766666544 211 122233333333 111000000000
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+++ .+...+.-|.-|...|+...|..+|..++....
T Consensus 366 ~RK--------~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 FRK--------YAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hHH--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 111 023344567778888999999999998887643
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.18 E-value=2.7 Score=26.13 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~ 65 (1065)
...+.+|..++.+|++++|..++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3568899999999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.54 E-value=57 Score=36.06 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=99.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----C
Q 001509 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFNR----G 176 (1065)
Q Consensus 103 ~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~----g 176 (1065)
...+...++.-+.+...+++.+|++..+|+.+..++.+.+. +..=+.++.++++.+|.|..+|...=.+.-.. .
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 34456677888999999999999999999999999987764 68889999999999999988875544433332 3
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
...+=+.+..+++..++.+ -.+|.....++-. .|+ ...-+.....++-.+|++..+|+..-
T Consensus 164 ~~~~El~ftt~~I~~nfSN-YsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~r 236 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSN-YSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHR 236 (421)
T ss_pred cchhHHHHHHHHHhccchh-hhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehH
Confidence 3677788999999999988 4555555444431 232 23344566667778999999987733
|
|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=5 Score=51.74 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=17.9
Q ss_pred CchhhhhhhhHHHhcCCCCC----CCCCCCCCCch
Q 001509 984 DDDVEENANDRLAAAGLEDS----DVDDEMAPSIT 1014 (1065)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 1014 (1065)
+++.-.+-+++|++-.|.-+ -.-.+..|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 33444567888999888432 22233555555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1065 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 3e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 6e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-12 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-08 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 3e-10 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-08 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 1e-07 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-05 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-05 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 8e-05 | ||
| 3zgq_A | 482 | Crystal Structure Of Human Interferon-induced Prote | 5e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein Ifit5 Length = 482 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-42
Identities = 86/457 (18%), Positives = 169/457 (36%), Gaps = 74/457 (16%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G+ E A + + DN LL + + F R S F A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
+P A +G + GQL +A + ++ AL+L P+ ++ + LA + E A
Sbjct: 62 QNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
++ A + P + L N G+ + A+ P + ++
Sbjct: 121 -----VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAW 172
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
NL ++++G+ A ++ +V ++ P F+ Y LG V + F A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV-TLD-P-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVL 428
L + P++ L +Y + G I+ A + R+A ++ P A
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA---------------Y 274
Query: 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 488
N+ EKG A + AL
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTAL------------------------------------ 298
Query: 489 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548
H + L NLA + + + A LYR L + ++ A+ LA++ +
Sbjct: 299 RLCPTHAD-------SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 549 RNNLQLSIELVNEALKVNGKYPNALSMLGDL--ELKN 583
+ LQ ++ EA++++ + +A S +G+ E+++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-40
Identities = 63/342 (18%), Positives = 130/342 (38%), Gaps = 29/342 (8%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A ++ + R + + + +++++ + ++ + A V
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
RG+ +++E Y+ AL++ P + + G + A QA+ ALQ +P+
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDG-YINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 233 ALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
L L E A +A E P A+A + L F G+ +L
Sbjct: 137 VRSDLGNLLKALGRLEEA-----KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E A+ + P +Y NL +++A Y+ ++ ++ P+ + L
Sbjct: 192 FEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS-PN-HAVVHGNLAC 245
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V + G A+ + + +E+ P + L + + G + +A++ A ++ P A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 411 QARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ LNN+ I E+G E A + ++ AL
Sbjct: 306 DS---------------LNNLANIKREQGNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-38
Identities = 76/424 (17%), Positives = 151/424 (35%), Gaps = 63/424 (14%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALG-------- 90
+ +A ++ G E Q+ + V +I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 91 ------------VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y+ LG + ++ + +E A ++Y A R+ ++ L
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+A G++E A A+ L+ + D + GR ++ Y +A++ P+ A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
+G G++ A F++A+ LDP ++A + L + + + A +
Sbjct: 172 -WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-----VAA 225
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
RA + P A+ LA ++ G L A+ P +Y NLA +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALK 282
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
KG +A Y ++ + L ++ + G+ A+ + K LE++P+
Sbjct: 283 EKGSVAEAEDCYNTAL-RLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436
L + Q G++++A ++A +I P A A +N+G
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---------------YSNMGNTLK 384
Query: 437 EKGE 440
E +
Sbjct: 385 EMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 1e-37
Identities = 72/434 (16%), Positives = 148/434 (34%), Gaps = 72/434 (16%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
+ +P EA L + + + A +E + A + P LA G
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEA-----IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
Q +AL P +L + G E+A Y+ +++ +P F
Sbjct: 116 DMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP-NFA 169
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 403 AKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 462
+ P A N+ +++E+G + A +++ A+
Sbjct: 230 LSLSPNHAVV---------------HGNLACVYYEQGLIDLAIDTYRRAI---------- 264
Query: 463 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 522
E + + NLA L++ A
Sbjct: 265 --------------------------ELQPHFPD-------AYCNLANALKEKGSVAEAE 291
Query: 523 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582
Y L + D+ LA I + + N++ ++ L +AL+V ++ A S L + +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 583 NDDWVKAKETFRAA 596
+A ++ A
Sbjct: 352 QGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 8e-34
Identities = 89/466 (19%), Positives = 160/466 (34%), Gaps = 81/466 (17%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+ + Y+ G A + + + +P+N L+ L+ + Q + + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLA 59
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+ P A A + L N + GQ + AL + P Y NLA + + GD
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGD 116
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
E A Y++++ + N P LG + LG A + K +E P+
Sbjct: 117 MEGAVQAYVSAL-QYN-PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE 440
LG ++ G+I A KA +DP A N+G + E
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA---------------YINLGNVLKEARI 218
Query: 441 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 500
F+ A ++ AL L N
Sbjct: 219 FDRAVAAYLRAL-------------------------------------------SLSPN 235
Query: 501 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 560
V NLA + + A YR + + DAY LA K + ++ + + N
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 561 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 620
AL++ + ++L+ L +++ + + +A +R A + + A +L + L
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL-EVFPEFAAAHSNLAS-----VL 349
Query: 621 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 666
+ + + L++A Y I + A + G L E
Sbjct: 350 QQQGK--------LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-32
Identities = 74/466 (15%), Positives = 151/466 (32%), Gaps = 82/466 (17%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA + GD+E A + M ++ +P + L + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ--EP-DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427
++ P E LG++Y + GQ+++A E R A ++ P
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG--------------- 103
Query: 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 487
N+ G+ E A Q++ AL
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSAL----------------------------------- 128
Query: 488 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 547
+ + + V +L LL+ + A Y + ++ A+ L +
Sbjct: 129 -QYNPDLYC-------VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180
Query: 548 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 607
A+ + L+I +A+ ++ + +A LG++ + + +A + A + +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVV 239
Query: 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667
+L + ++ A + Y R I A L EKG
Sbjct: 240 HGNLAC-----VYYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 727
++D + D NLA++ QGN A+++Y+ L + A
Sbjct: 287 VAEAEDCYNTALRLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA 339
Query: 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
LA + + Q+ AI ++P+ + G +++
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 68/446 (15%), Positives = 136/446 (30%), Gaps = 83/446 (18%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
LA+ + G E+ P + L+ + +++ + ++K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
+ P Y LG V + G + A+ ++ L + PD + L V G +E
Sbjct: 62 Q--NP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 394 KAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
A + A + +P R +++G + G E A + A+
Sbjct: 119 GAVQAYVSALQYNPDLYCVR---------------SDLGNLLKALGRLEEAKACYLKAI- 162
Query: 454 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 513
E N NL +
Sbjct: 163 -----------------------------------ETQPNFAV-------AWSNLGCVFN 180
Query: 514 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 573
+ A + + +++DAY+ L + K ++ AL ++ +
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Query: 574 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH 633
L + + A +T+R A A +L N AL+ +
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLAN-----ALKEKGS-------- 286
Query: 634 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 693
+ +A++ Y + ++ + N + E+G + + L+ + E
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAA 341
Query: 694 WINLAHVYFAQGNFALAMKMYQNCLR 719
NLA V QG A+ Y+ +R
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIR 367
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-39
Identities = 57/410 (13%), Positives = 128/410 (31%), Gaps = 42/410 (10%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILE----------------EGSSPEIDEYYADVRY 80
+ + + Y ++ +++ L ++ E + + Y
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 81 ERIAILNA--LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
+ +A L Y + + E + Y + + K L
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELR-----RAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ + +LE D N+ G + + HP
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
L +G+ + ++ +AR+ F ++ +DP+ A + A ++ A +
Sbjct: 376 -WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA-----ISA 429
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
A ++ + +L G L + +++ A+ L
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAF 486
Query: 317 SKGDYEKAGLYY----MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+K D + A ++ + K + + + LG KL + +A+ + L +
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422
++ A+ +Y+ A L ++ I P + A LLK+A EE
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 8e-36
Identities = 75/549 (13%), Positives = 162/549 (29%), Gaps = 68/549 (12%)
Query: 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV 91
+L P D + + A+ Y G + + + ++ + RY L L
Sbjct: 110 VLDITGNPNDAFWL-AQVYCCTG---DYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYD 165
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ L + +++ A + + I + E S +GQ+ ++A +
Sbjct: 166 WQGALNLLGETNPFRKDEK-NANKLLMQDGGIKL-EASMCYLRGQVYTNLSNFDRAKECY 223
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL--GIGLCRYK 209
K L D A L +R + L +
Sbjct: 224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269
+ + + ++ ++ + L+ A + + + EI PY
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR---FIDVLAITTKILEIDPYNLD 340
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329
+G+ +L + + + P K+ ++ + Y +A Y+
Sbjct: 341 VYPLHLASLHESGEK---NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
S ++ +F + G G+ A++ + ++ LG ++QL
Sbjct: 398 KSS-TMDP--QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454
Query: 390 GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449
G I A E L+ + + D LN +GV+ F K + ++A F+
Sbjct: 455 GNILLANEYLQSSYALFQYDPLL---------------LNELGVVAFNKSDMQTAINHFQ 499
Query: 450 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509
+AL NL
Sbjct: 500 NAL------------------------------------LLVKKTQSNEKPWAATWANLG 523
Query: 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569
++ AA L + + + +A + + L+I ++E+L ++
Sbjct: 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583
Query: 570 PNALSMLGD 578
A +L
Sbjct: 584 IMASDLLKR 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 61/555 (10%), Positives = 134/555 (24%), Gaps = 81/555 (14%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +Y + ++ L + + A L G +A+ + + +
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLA--QVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 234 LVALAVMDL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288
+A + A G K ++ + A+ + GQ +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213
Query: 289 QLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ A ++ L ++ D E + + + F+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + D ++ + + + L + + K +
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
IDP + +V E GE + D +
Sbjct: 334 IDPYNL---------------DVYPLHLASLHESGEKNKLYLISNDLV------------ 366
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
+ W V + + + + A
Sbjct: 367 ------------------------DRHPEKAVT-WLAVGIYYLCVNKISE-----ARRYF 396
Query: 525 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584
+ + A++ A +I A ++ LG ++
Sbjct: 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455
Query: 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644
+ + A E +++ A D LG N+ H + A L +
Sbjct: 456 NILLANEYLQSSY-ALFQYDPLLLNELGV-----VAFNKSDMQTAIN-HFQNALLLVKKT 508
Query: 645 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704
G + +D + D Q ++ +V +A VY +
Sbjct: 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-----NDANVHTAIALVYLHK 563
Query: 705 GNFALAMKMYQNCLR 719
LA+ L
Sbjct: 564 KIPGLAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-24
Identities = 61/538 (11%), Positives = 129/538 (23%), Gaps = 100/538 (18%)
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
+LA + TG + + L S Y A D++ A +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 333 KEINKPHEFIFP-------------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y GQV L +F A +++ L + E
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDA--------------------QARTLLKKA 419
L ++ E L + DA + +
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297
Query: 420 GEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 477
+ ++L F + F L
Sbjct: 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL------------------------- 332
Query: 478 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 537
E D +++ V L + + ++ ++ ++ +
Sbjct: 333 -----------EIDPYNLD-------VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374
Query: 538 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 597
+L + N + + +++ ++ ++ A + +A + A+
Sbjct: 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434
Query: 598 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 657
L LG + A E + N
Sbjct: 435 RL-FQGTHLPYLFLGM-----QHMQLGN--------ILLANEYLQSSYALFQYDPLLLNE 480
Query: 658 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQ 715
GVV K + + F + + W NL H Y + A+
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 716 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
L DA + +A + + L ++ ++P+ A+++
Sbjct: 541 QGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 8e-23
Identities = 67/515 (13%), Positives = 146/515 (28%), Gaps = 68/515 (13%)
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSY---YNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L++Q + A V + + + LA+ Y GDY +A + N+
Sbjct: 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARA-KCLLTKEDLYNRSS 150
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LG 383
Y +KL D++ AL + D K G
Sbjct: 151 AC---RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 443
+Y L ++A+E ++A +D + +A L E + + +++
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST----- 262
Query: 444 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503
+ A +++ L+ + + + L +
Sbjct: 263 -YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS--------SINGLEKSSD------- 306
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
+L A L + + IL +D Y A + N+ +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366
Query: 564 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 623
+ + +G L + +A+ F +S D + A + + + E
Sbjct: 367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAH-----SFAIE 420
Query: 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683
++A YT G+ + G ++ +
Sbjct: 421 GE--------HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 684 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHY 738
P + L V F + + A+ +QN L A L +
Sbjct: 473 YD-----PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527
Query: 739 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
+ + + +L + + L+ ++ + +
Sbjct: 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 90.3 bits (224), Expect = 9e-19
Identities = 62/456 (13%), Positives = 135/456 (29%), Gaps = 66/456 (14%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTK-EDLY 146
Query: 407 PRDAQARTLLKKAGEEVPI-----------------------------------EVLNNI 431
R + R L ++ +
Sbjct: 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206
Query: 432 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEN 490
G ++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 207 GQVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259
Query: 491 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 550
+ + + L+ L D + + Y + + D L A R+
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319
Query: 551 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 610
+ + + L+++ + + ++ + K D + + L+
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLA 378
Query: 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 670
+G Y+ + + +A+ +++ A G A +G+ D
Sbjct: 379 VG--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425
Query: 671 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 730
+ +T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 426 AISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLL 478
Query: 731 LYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 766
L + Q A+ L +
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-35
Identities = 50/301 (16%), Positives = 104/301 (34%), Gaps = 18/301 (5%)
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
V + + + +V+E D + L + ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLG-KARQAFQRALQLDPENVEALVALAV--MDLQA 244
+ ++PS P + +G +G AR+ +A L+ A +A
Sbjct: 82 LVDLYPSNPVS-WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
++ A M A ++ C + + Y+ + T L E+ AL++ P
Sbjct: 141 HDQA-----MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED 192
Query: 305 SHSYYNLARSYHSKGDYEKAGLYY------MASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + G+++ A ++ + ++ ++ LG V KL +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
AL + L + P N T A+G+I+ +G E A + A + D + T+L
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 419 A 419
Sbjct: 313 C 313
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-30
Identities = 60/375 (16%), Positives = 109/375 (29%), Gaps = 64/375 (17%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ I + + Q LD+ + +A ++ + ++E D ++A
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVME------KDPFHASCLPV 61
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
I L L + E +K + P +W G L
Sbjct: 62 HIGTLVELN--------------KANE----LFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103
Query: 142 GE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
G E A ++ PA + + ++ Y A Q+ C +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM- 162
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L IGL A + F +AL + PE+ + + V+ Q E + + A
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDA 219
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
E A+ NL
Sbjct: 220 LEKIK----------------------------AIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y +A Y+ + P Y +G + +G+F +A+ F L + D+ ++
Sbjct: 252 YAEALDYHRQ-ALVLI-PQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 381 ALGHIYVQLGQIEKA 395
LGH +A
Sbjct: 309 MLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-30
Identities = 51/320 (15%), Positives = 106/320 (33%), Gaps = 39/320 (12%)
Query: 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ + + ++ ++N+ ++ A + + + ++ P + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI 63
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL---QANEAAGIRKGMEKMQRAF 261
+L + + + + L P N + A+ L NE A + +A
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA-----RRYLSKAT 118
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A + F +H TA + + Y +
Sbjct: 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTNNS 175
Query: 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------- 372
+ A ++ ++ I E F + +G V + G++++A F LE
Sbjct: 176 KLAERFFSQAL-SIAP--EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432
L LGH+ +L + +A + R+A + P++A + IG
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA---------------STYSAIG 277
Query: 433 VIHFEKGEFESAHQSFKDAL 452
IH G FE+A F AL
Sbjct: 278 YIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 52/363 (14%), Positives = 111/363 (30%), Gaps = 59/363 (16%)
Query: 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ ++ EN++ +V+LA + + + E P+ A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLA---ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG-DYEKAGLYYMASVKE 334
+ +L + + + P+ S++ + Y G E A Y +
Sbjct: 64 GTLVELNKA---NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-T 119
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ K + + G + A+ + ++ + +G Y +
Sbjct: 120 LEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177
Query: 395 AQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 454
A+ +A I P D V++ +GV+ F+ GE+++A + F DAL
Sbjct: 178 AERFFSQALSIAPEDP---------------FVMHEVGVVAFQNGEWKTAEKWFLDAL-- 220
Query: 455 GIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 514
+ +L NL + +
Sbjct: 221 --------------------------------EKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 515 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 574
+ A +R L Y + I N + +++ + AL + +++
Sbjct: 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 575 MLG 577
MLG
Sbjct: 309 MLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-17
Identities = 50/374 (13%), Positives = 95/374 (25%), Gaps = 75/374 (20%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGIWLTLLDS 463
+ P + + +G + G E A + A T L+
Sbjct: 85 LYPSNPVS---------------WFAVGCYYLMVGHKNEHARRYLSKA-------TTLEK 122
Query: 464 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 523
A W + A
Sbjct: 123 T------YGPA------------------------WI------AYGHSFAVESEHDQAMA 146
Query: 524 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 583
Y + L + NN +L+ ++AL + + P + +G + +N
Sbjct: 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 584 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYF---AALRNEKRAPKLEATHLEKAKEL 640
+W A++ F A + + T+ R K+ +A +
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK--------YAEALDY 258
Query: 641 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 700
+ + +V N + G + + G F+ + D F L H
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-----DDTFSVTMLGHC 313
Query: 701 YFAQGNFALAMKMY 714
+ A
Sbjct: 314 IEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 37/278 (13%), Positives = 78/278 (28%), Gaps = 27/278 (9%)
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
V+ +LA D L +++ K + N L ++ +
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83
Query: 564 KVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRN 622
+ P + +G + A+ A+ + A ++ G+ +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTYGPAWIAYGH-----SFAV 137
Query: 623 EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAA 682
E ++A Y G+ +++ F+Q A
Sbjct: 138 ESE--------HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189
Query: 683 SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-------AQILLYLAR 735
P V + V F G + A K + + L K + +L L
Sbjct: 190 PED-----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 736 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
+ +++ + +A+ L P N + G
Sbjct: 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSL 282
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 38/370 (10%), Positives = 107/370 (28%), Gaps = 66/370 (17%)
Query: 411 QARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 468
+ T++ ++ + + ++V+ ++ H+ +F+ ++ +
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM---------------- 49
Query: 469 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 528
E D H + L L + E L +
Sbjct: 50 --------------------EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHKL 82
Query: 529 LFKYQDYVDAYLRLAAIAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587
+ Y ++ + + + + +++A + Y A G +
Sbjct: 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHD 142
Query: 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 647
+A + A+ L +G + A+ +++ +
Sbjct: 143 QAMAAYFTAAQL-MKGCHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALSI 188
Query: 648 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYFA 703
+ + + GVV + G++ ++ F ++ + + + NL HV
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248
Query: 704 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 763
+A A+ ++ L +A + H +++ A+ L +
Sbjct: 249 LKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Query: 764 RFDAGVAMQK 773
G ++
Sbjct: 307 VTMLGHCIEM 316
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-34
Identities = 68/397 (17%), Positives = 128/397 (32%), Gaps = 73/397 (18%)
Query: 43 WLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98
L + ++ G+ + QF ++ D Y R + +GK
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRR-------ATVFLAMGK 52
Query: 99 IETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158
+ A K + M + + +G LLL +G++++A FK VL+++
Sbjct: 53 SK-----------AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 159 RDNVPA---------------LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
L QA F+ Y+ ++ F + L+V R
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELR 160
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
C K G+ KA + A +L +N EA ++ + Q + + +++ ++
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKL 217
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ K + A G Y
Sbjct: 218 DQDHKRCFAHYKQ-------------------------VKKLNKLIESAEELIRDGRYTD 252
Query: 324 AGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A Y + +K E + + + K A+ +VL++ PDN LK
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
Y+ ++A + A + + D Q R L+KA
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-29
Identities = 57/338 (16%), Positives = 111/338 (32%), Gaps = 52/338 (15%)
Query: 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186
+ + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + + A RL G K G+L +A F++ L+ +P E A +
Sbjct: 62 KVIALKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES-------- 112
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ +A E+ + AL+ + + L V +
Sbjct: 113 ---------QLVKADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEV---CVWDAE 155
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
A + +G+ KA A+ K K + +Y + + +LGD +L+
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKL--KS-DNTEAFYKISTLYYQLGDHELSLSEVR 212
Query: 367 KVLEIYPDNCETLKALGHI------------YVQLGQIEKAQELLRKAAKIDPRDAQART 414
+ L++ D+ + ++ G+ A K +P A+
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 415 LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
I + + A + + L
Sbjct: 273 RS-----------KERICHCFSKDEKPVEAIRICSEVL 299
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-24
Identities = 57/442 (12%), Positives = 136/442 (30%), Gaps = 97/442 (21%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ L + + G A + A+V + + P + YY V L +G ++AL +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAV-DGD-P-DNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426
KV+ + D GH+ ++ G++++A++ +K K +P + + + + + ++
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121
Query: 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 486
L + + F+ ++ +A L
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKIL---------------------------------- 147
Query: 487 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 546
E EL + + I D + D +A+ +++ +
Sbjct: 148 --EVCVWDAELRELRAECFIKEGEPRKAISD-------LKAASKLKSDNTEAFYKISTLY 198
Query: 547 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 606
+ +LS+ V E LK++ + + + K
Sbjct: 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV-----------------------KKLN 235
Query: 607 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI------VQHTSNLYAANGAGV 660
+ L + R A Y V+ ++T
Sbjct: 236 KLIESAE-----ELIRDGR--------YTDATSKYESVMKTEPSVAEYTVRSK--ERICH 280
Query: 661 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 720
++ + + + ++V + + + + A Y + + A++ Y+
Sbjct: 281 CFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDRAEAYLIEEMYDEAIQDYEAAQE- 334
Query: 721 FYYNTDAQILLYLARTHYEAEQ 742
+ D QI L + +Q
Sbjct: 335 -HNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 54/411 (13%), Positives = 119/411 (28%), Gaps = 106/411 (25%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAF 261
G GQL A F A+ DP+N A A + + ++AA + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVI 64
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A +G
Sbjct: 65 ALKMDFTAA-------------------------------------RLQRGHLLLKQGKL 87
Query: 322 EKAGLYY------------MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
++A + + + + D+ +A+T +K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429
E+ + E + +++ G+ KA L+ A+K+ + +A
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA---------------FY 192
Query: 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489
I ++++ G+ E + ++ L LD D +K ++ ++
Sbjct: 193 KISTLYYQLGDHELSLSEVRECL-------KLDQ-------DHKRCFAHYKQVKKLNKLI 238
Query: 490 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAI 545
L R + A+ Y ++ + + R+
Sbjct: 239 ESAE----------ELIRDGRYTD-------ATSKYESVMKTEPSVAEYTVRSKERICHC 281
Query: 546 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
+I + +E L++ NAL + L + + +A + + AA
Sbjct: 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 5e-22
Identities = 56/432 (12%), Positives = 116/432 (26%), Gaps = 85/432 (19%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
+ AR G + ++G+ + A FK L
Sbjct: 66 LKMDFTAAR---------------LQRGHLLLKQGKLDEAEDDFKKVL------------ 98
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
+ S + + QL + ++ ++ F+ A I
Sbjct: 99 ----KSNPSEQEEKEAESQLVK-----ADEMQRLRSQALDAFDGADYTAAITF------- 142
Query: 525 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584
IL + A + +I + A K+ A + L +
Sbjct: 143 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202
Query: 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644
D + R L L + ++ + K+ KL
Sbjct: 203 DHELSLSEVREC------------LKL-DQDHKRCFAHYKQVKKLNKLIES--------- 240
Query: 645 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704
L G++ + + V + SV + H +
Sbjct: 241 --------------AEELIRDGRYTDATSKYESVMKT-EPSVAEYTVRSKERICHCFSKD 285
Query: 705 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN---Y 761
A+++ L+ + L A + E + + + A ++
Sbjct: 286 EKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343
Query: 762 TLRFDAGVAMQK 773
A +++
Sbjct: 344 EGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 595
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 596 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 650
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 711 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 766
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 767 AGVAMQKFSASTLQKTRR 784
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 7e-34
Identities = 76/627 (12%), Positives = 168/627 (26%), Gaps = 111/627 (17%)
Query: 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112
Q+ SP + YA L G ++
Sbjct: 4 MNGEPDIAQLKG--LSPSQRQAYAVQ-------LKNRGNHFFTAKNFN-----------E 43
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A +YY A +D +EP + ++ G++E+ LE D+ ALL +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPE 229
+ G ++D++ +I + K + R Q+ P
Sbjct: 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Query: 230 NVEALVAL-----AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + N ++ + A + +AN
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
L+ + + + + K + A + S+ ++
Sbjct: 224 MYHSLLSANTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESI-NLHPTPNS--- 278
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
++P + + + +++G+F + F +
Sbjct: 339 LNPENVYP---------------YIQLACLLYKQGKFTESEAFFNETK------------ 371
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE---------QI 515
E+P +L + ++
Sbjct: 372 ------------------------LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Query: 516 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 575
+ + L + +I+L+ +A +++ + A
Sbjct: 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467
Query: 576 LGDLELKNDDWVKAKETFRAASD-ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 634
L L+L+ + +A E F ++ A + + EA +
Sbjct: 468 LAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF-----------------AEAAKI 510
Query: 635 EKAKELYTRVIVQHTSNLYAANGAGVV 661
+K + + L G++
Sbjct: 511 QKRLRADPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-30
Identities = 62/427 (14%), Positives = 126/427 (29%), Gaps = 41/427 (9%)
Query: 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLG----KI 99
L + ++ + L + + ++E + +L + ++ G +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178
Query: 100 ETKQREKEEHFILATQYYNKASRIDMHEPSTWV--GKGQLLLAKGEVEQASSAFKIVLEA 157
E ++ A + A + L + SA +
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217
+ AL F + D+ + ++ +HP+ I L + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL--TLADKENSQEFF 296
Query: 218 QAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ FQ+A+ L+PE M LQ + A E Q+A + P LA
Sbjct: 297 KFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA-----KEDFQKAQSLNPENVYPYIQLA 351
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-- 333
+ G+ E PT A +GD++ A Y + +
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 334 -----------EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + QL F +A+ K E+ P + + L
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA--------RTLLKKAGEEVP--IEVLNNIG 432
+ +Q+ +I++A EL +A + + ++K P +
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTL 528
Query: 433 VIHFEKG 439
+ KG
Sbjct: 529 ARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 1e-29
Identities = 72/643 (11%), Positives = 176/643 (27%), Gaps = 135/643 (20%)
Query: 142 GEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197
G + L + F +++++++Y+ A+++ P+ P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257
I C G L K + +AL++ P++ +AL+ A + +
Sbjct: 61 F-YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS----------ANESLGNF 109
Query: 258 QRAFEIY--------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
A A L + L E L++ + P+ +
Sbjct: 110 TDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS 169
Query: 310 NLA--------RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S ++ +Y+ A +++ + + + + + S
Sbjct: 170 FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY-LVANDLLTKSTDMYHSL 228
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
L+ + + L G + + AQ LL+++ + P
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP------------ 276
Query: 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 481
+ + +K + + F+ A+
Sbjct: 277 ----NSYIFLALTLADKENSQEFFKFFQKAV----------------------------- 303
Query: 482 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 541
+ + + ++ ++ + D A ++ + V Y++
Sbjct: 304 -------DLNPEYPP-------TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349
Query: 542 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 601
LA + + S NE P + ++ D+ A + + A
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK---- 405
Query: 602 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 661
+ E H+ ++ + L +
Sbjct: 406 ----------------------RLEEVQEKIHVGIG------PLIGKATILARQSSQDPT 437
Query: 662 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 721
++ +F+ + L T+ E + I LA + A++++++
Sbjct: 438 QLDEEKFNAAIKLLTKACELDP-----RSEQAKIGLAQLKLQMEKIDEAIELFEDSAI-- 490
Query: 722 YYNTDAQILLYLARTHYEAEQWQD---CKKSLLRAIHLAPSNY 761
T + A T EA + Q + + L + Y
Sbjct: 491 LARTMDE--KLQATTFAEAAKIQKRLRADPIISAKMELTLARY 531
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-29
Identities = 60/426 (14%), Positives = 119/426 (27%), Gaps = 44/426 (10%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
+ I+ Y G +E+ + LE I ++ R + +LG +
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLGNFTDAM 113
Query: 93 --YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L E + ++ + Q+L + +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
F LE N Y + ALQ S + L
Sbjct: 174 FDSHLEVSSVN------------TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
A L AL + A +Q + ++P
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT- 275
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ +LA + + A+ P +YY+ + Y DY+ A
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVD---LNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
+ + +N E ++PY L + K G F + F + +P E I
Sbjct: 333 FQKAQ-SLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQART-LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 446
G + A + A +++ + + G+ + ++ ++ +F +A +
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 447 SFKDAL 452
A
Sbjct: 450 LLTKAC 455
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-28
Identities = 62/579 (10%), Positives = 144/579 (24%), Gaps = 111/579 (19%)
Query: 113 ATQYYNKASRIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168
+ + + + +G +A ++ +E D +
Sbjct: 6 GEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI 65
Query: 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228
+ + G +EF +AL++ P A L LG A L L+
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKA-LLRRASANESLGNFTDAMFDLS-VLSLNG 123
Query: 229 ENVEALVALAVMDLQANEAAGIRKGM--EKMQRAFEIYPYCAMALNYLA--------NHF 278
+ A + + +A + + R ++ P ++ +
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ + L AL + T S Y +
Sbjct: 184 NTSSNYDTAYALLSDALQR-LYSATDEGYLVANDLLTKSTDMYHSLLSANT---VDDPLR 239
Query: 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
G + A ++ + ++P + L ++ +
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKF 298
Query: 399 LRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 458
+KA ++P + G ++F ++++A + F+ A
Sbjct: 299 FQKAVDLNPEYPPT---------------YYHRGQMYFILQDYKNAKEDFQKAQ------ 337
Query: 459 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 518
+ +V +L+ + E
Sbjct: 338 ------------------------------SLNPENVYPYIQLACLLYKQGKFTESEAF- 366
Query: 519 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578
+ K+ + A I R + +I+ + A ++ +G
Sbjct: 367 ------FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420
Query: 579 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 638
L K AT+ + +E++ A
Sbjct: 421 LIGK------------------------ATILARQSSQDPTQLDEEK--------FNAAI 448
Query: 639 ELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 677
+L T+ + A G + + + D + +LF
Sbjct: 449 KLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-26
Identities = 57/474 (12%), Positives = 137/474 (28%), Gaps = 43/474 (9%)
Query: 319 GDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
G + ++ + G +F A+ ++ +E+ P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFE 437
+ Y+ G +EK E KA +I P ++A L +
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA---------------LLRRASANES 105
Query: 438 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 497
G F A +G + ++ A + +++ +
Sbjct: 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165
Query: 498 PWNKVTVLFNLARLLEQIHDTVA---ASVLYRLILFKYQDYVDAYLRLAA--IAKARNNL 552
+F+ + ++ + A L L + D +A + K+ +
Sbjct: 166 SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225
Query: 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 612
+ + AL G ++ + A+ + + + +SY + L
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY--IFLA 283
Query: 613 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672
L +++ ++ + + + + + G + + +K
Sbjct: 284 L-----TLADKEN--------SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330
Query: 673 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 732
+ F + Q + +I LA + + QG F + + KF T ++ +
Sbjct: 331 EDFQKAQSLNP-----ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTF 383
Query: 733 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 786
A + + K A L + G + K + Q ++
Sbjct: 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 43/393 (10%), Positives = 107/393 (27%), Gaps = 76/393 (19%)
Query: 27 SDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + D L+ + D ++A + + + + E A L
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA-------L 246
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+++ + A ++ + P++++ L K ++
Sbjct: 247 CYTGIFHFLKNNLLD-----------AQVLLQESINLH-PTPNSYIFLALTLADKENSQE 294
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
F+ ++ + + P + + F Y ++ E +++A ++P + +
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQLACL 353
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIY 264
YK G+ ++ F P E A + D + A +++ A +
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA-----IKQYDIAKRLE 408
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
+ T + + + + A
Sbjct: 409 EVQEKIHVGIGPLI---------------------GKATILARQSSQDPTQLDEEKFNAA 447
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV---------------- 368
+ E++ GL Q++L++ A+ FE
Sbjct: 448 IKLLTKAC-ELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Query: 369 ---------LEIYPDNCETLKALGHIYVQLGQI 392
L P ++ Y G +
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-33
Identities = 39/364 (10%), Positives = 94/364 (25%), Gaps = 33/364 (9%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V + + +A + + G A V++
Sbjct: 141 VAIASHDGGKQALETVQA----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
V A+ + L +A + P AI G + L
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQAL 255
Query: 211 GQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268
+ + +A L P+ V A+ + L+ + + + +A + P
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL-----LPVLCQAHGLTPQQV 310
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+A+ + + A +T P + + + + ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388
+ + E + G + L + L + + P+ + +
Sbjct: 368 CQAH-GLT--PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 389 LGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 448
L +++ +L +A + P+ A + + G +
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVA---------------IASNGGGRPALESIVAQLSRP 469
Query: 449 KDAL 452
AL
Sbjct: 470 DPAL 473
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-31
Identities = 36/375 (9%), Positives = 96/375 (25%), Gaps = 40/375 (10%)
Query: 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
+++ + + L ++ +A + + A
Sbjct: 104 QQVVAIASHDGGKQALETVQR-----------LLPVLCQAHGLTPEQVVAIASHDGGKQA 152
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
V+ + V A+ + L +A + P AI
Sbjct: 153 LETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 212
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQ 258
G + L + + +A L P+ V A+ L+ + + +
Sbjct: 213 -SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL-----LPVLC 266
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A + P +A+ + + + A +T P + + + +
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASNGGGKQAL 323
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
++ + + + + + L + L + + P+
Sbjct: 324 ETVQRLLPVLCQAH-GLT--PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEK 438
+ + G L +++ +L +A + P A + +
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA---------------IASHDGGKQAL 425
Query: 439 GEFESAHQSFKDALG 453
+ A G
Sbjct: 426 ETVQRLLPVLCQAHG 440
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-30
Identities = 37/348 (10%), Positives = 90/348 (25%), Gaps = 29/348 (8%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ + V A+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 228 PENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P+ V A+ L+ + + + +A + P +A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ + A +T P + + + + + ++ + + + +
Sbjct: 260 RLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQAH-GLT--PQQVVAI 313
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + L + L + + P + + L +++ +L +A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 406 DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453
P A + + G + A G
Sbjct: 374 TPEQVVA---------------IASNGGGKQALETVQRLLPVLCQAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-30
Identities = 46/482 (9%), Positives = 110/482 (22%), Gaps = 72/482 (14%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ + A V++ V A+ +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
L +A + P AI + L + +A L PE V A+ +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 237 LAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
L+ + + + +A + P +A+ + + A
Sbjct: 180 NGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+T P + + + + ++ + + + +
Sbjct: 235 HGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQA 288
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414
L + L + + P + + G L +++ +L +A + P+ A
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA-- 346
Query: 415 LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 474
+ + + A
Sbjct: 347 -------------IASHDGGKQALETVQRLLPVLCQAH---------------------- 371
Query: 475 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 534
V + L + + A L +
Sbjct: 372 --------------GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGL-------TPE 410
Query: 535 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 594
V A +A +Q + ++ +A + + A++ G + V
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD 470
Query: 595 AA 596
A
Sbjct: 471 PA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-25
Identities = 50/555 (9%), Positives = 120/555 (21%), Gaps = 96/555 (17%)
Query: 211 GQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
L A + LQLD + + AV + A A + P
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA-------PLNLTPE 70
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+A+ + + A +T P + + + + ++
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLP 127
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
+ E + + L ++ L + + P+ + + G
Sbjct: 128 VL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 387 VQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 446
L +++ +L +A + P+ A + + G +
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVA---------------IASNGGGKQALETVQRLLP 229
Query: 447 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 506
A G L V +
Sbjct: 230 VLCQAHG-------LTP-----------------------------QQVVAIASNGGGKQ 253
Query: 507 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 566
L + + A L V A + +A +Q + ++ +A +
Sbjct: 254 ALETVQRLLPVLCQAHGLTP-------QQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306
Query: 567 GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRA 626
+ A++ G + + + A + A S
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASHDG------------- 352
Query: 627 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 686
K +++ + + + A G + Q
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP--- 409
Query: 687 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 746
+ + A + + + E
Sbjct: 410 --EQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGRPALESIVAQ 465
Query: 747 KKSLLRAIHLAPSNY 761
A+ +++
Sbjct: 466 LSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 34/357 (9%), Positives = 85/357 (23%), Gaps = 40/357 (11%)
Query: 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY-------- 92
V+ +L + + + AL
Sbjct: 141 VAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 198
Query: 93 ------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
G + + +A + + G A
Sbjct: 199 QAHGLTPQQVVAIASNGGGKQALETVQR----LLPVLCQAHGLTPQQVVAIASNGGGKQA 254
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
V++ V A+ + + L +A + P AI
Sbjct: 255 LETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAI- 313
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 258
G + L + + +A L P+ V A+ + L+ + + +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL-----LPVLC 368
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A + P +A+ + + A +T P + + + +
Sbjct: 369 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---PEQVVAIASHDGGKQAL 425
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
++ + + + + G + L + L+ + L ++
Sbjct: 426 ETVQRLLPVLCQAH-GLTP--QQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-22
Identities = 52/581 (8%), Positives = 124/581 (21%), Gaps = 121/581 (20%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ + A L+ D + + + V ++ L + P
Sbjct: 11 SGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPE 70
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
AI + L + + +A L P+ V A+ + ++ +
Sbjct: 71 QVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG----------GKQAL 119
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
E +QR + A +T P + + +
Sbjct: 120 ETVQRLLPVL---------------------------CQAHGLT---PEQVVAIASHDGG 149
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+ + + E + G + L + L + + P
Sbjct: 150 KQALETVQALLPVL---CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVI 434
+ + G L +++ +L +A + P+ A + + G
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA---------------IASNGGG 251
Query: 435 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 494
+ A
Sbjct: 252 KQALETVQRLLPVLCQAH------------------------------------GLTPQQ 275
Query: 495 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 554
V + L + + A L V A +A +Q
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLT-------PQQVVAIASNGGGKQALETVQR 328
Query: 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 614
+ ++ +A + + A++ + + + A + A S G
Sbjct: 329 LLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLTPEQVVAIASNGG- 386
Query: 615 NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 674
K +++ + + + A +
Sbjct: 387 ------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPV 434
Query: 675 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 715
Q Q + A + +
Sbjct: 435 LCQAHGLTP-----QQVVAIASNGGGRPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-14
Identities = 42/469 (8%), Positives = 102/469 (21%), Gaps = 82/469 (17%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H ++ + + + AG +++ G + +R+ALT
Sbjct: 4 HHHHHQWSGARALEALLTVAGELR-GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424
L + P+ + + L +++ +L +A + P+ A
Sbjct: 63 --APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA------------ 108
Query: 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 484
+ + + A
Sbjct: 109 ---IASHDGGKQALETVQRLLPVLCQAH-------------------------------- 133
Query: 485 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 544
L +V + + + + A + + V A
Sbjct: 134 -----------GLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGG 182
Query: 545 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 604
+A +Q + ++ +A + + A++ G + + + A +
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQ 241
Query: 605 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 664
A S G + + +++ + + + A
Sbjct: 242 VVAIASNGG-----GKQALET--------VQRLLPVLCQAHGLTPQQVVAIASNSGGKQA 288
Query: 665 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724
+ Q Q + A + +
Sbjct: 289 LETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTP 341
Query: 725 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
+ E Q L +A L P G Q
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQA 390
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 8e-32
Identities = 62/369 (16%), Positives = 120/369 (32%), Gaps = 39/369 (10%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFIL------------ATQYYNKASRIDMHEPSTWVGK 134
++ GV + E+H L A ++ A D + +
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ LA G+ + A V++ D A L + + +G+ ++ + +K+ L+ +PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 195 CPGAIR--------------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
L + G A + L++ + E A
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL----- 295
++ E RK + ++ A ++ A ++ ++ G H L L
Sbjct: 187 FIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 296 ---AVTNHGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQ 350
++ K A G Y A Y + +K E + + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K A+ +VL++ PDN LK Y+ ++A + A + + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 411 QARTLLKKA 419
Q R L+KA
Sbjct: 364 QIREGLEKA 372
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-30
Identities = 62/488 (12%), Positives = 130/488 (26%), Gaps = 92/488 (18%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
G L + Q+ + + L G+ +D+L + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A +G+ A + +QL + A + + + A
Sbjct: 55 GDPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ ++ + P + +
Sbjct: 114 -----EDDFKKVLKSNPSENEEKEAQSQL----------------------IKSDEMQRL 146
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
+ A + GDY A + ++ E + +K G+ R A+++ +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---RELRAECFIKEGEPRKAISDLKAA 203
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVL 428
++ DN E + +Y QLG E + +R+ K+D + K+ + + L
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK---LNKL 260
Query: 429 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 488
G + A ++ +
Sbjct: 261 IESAEELIRDGRYTDATSKYESVM------------------------------------ 284
Query: 489 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548
+ + + E V + + V A + +L D V+A A
Sbjct: 285 KTEPSIAEY---TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341
Query: 549 RNNLQLSIELVNEALKVNGKYPNALSMLGDLEL-----KNDDWVKAKETFRAASDATDGK 603
+I+ A + N L + + D+ K R A +
Sbjct: 342 EEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ-EII 400
Query: 604 DSYATLSL 611
+Y L+L
Sbjct: 401 KAYRKLAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 59/469 (12%), Positives = 128/469 (27%), Gaps = 96/469 (20%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H +++ ++ Y ++ + ++ K + LG+ L G AL+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-------MADVEK-------HLELGKKLLAAGQLADALSQ 48
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424
F ++ PDN +++ +G+ + A L K ++ AR
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR----------- 97
Query: 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 484
G + ++G+ + A FK L K+ + + Q
Sbjct: 98 ----LQRGHLLLKQGKLDEAEDDFKKVL-----------KSNPSENEEKEAQSQLIKSD- 141
Query: 485 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 544
++ L + A D AA IL + A
Sbjct: 142 ----------------EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 545 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 604
+ +I + A K+ A + L + D + R
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC-------- 237
Query: 605 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 664
L L + ++ + K+ KL + L
Sbjct: 238 ----LKL-DQDHKRCFAHYKQVKKLN-----------------------KLIESAEELIR 269
Query: 665 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724
G++ + + V + + + H + A+++ L+
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVR-SKERICHCFSKDEKPVEAIRVCSEVLQ--MEP 326
Query: 725 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
+ L A + E + + + A ++ +R A +
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 59/406 (14%), Positives = 130/406 (32%), Gaps = 53/406 (13%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ L + + G A + A+V + + P +I YY V L +G ++AL +
Sbjct: 28 KHLELGKKLLAAGQLADALSQFHAAV-DGD-PDNYIA-YYRRATVFLAMGKSKAALPDLT 84
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426
KV+++ D GH+ ++ G++++A++ +K K +P + + + + + ++
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144
Query: 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 486
L + + F G++ +A L
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKIL---------------------------------- 170
Query: 487 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 546
E EL + + I D + D +A+ +++ +
Sbjct: 171 --EVCVWDAELRELRAECFIKEGEPRKAISD-------LKAASKLKNDNTEAFYKISTLY 221
Query: 547 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA--SDATDGKD 604
+ +LS+ V E LK++ + + ++ N A+E R +DAT +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281
Query: 605 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 664
S Y + + +A + + V+ N+ A
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341
Query: 665 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710
+ +D + + QE + L
Sbjct: 342 EEMYDEAIQDYETAQEHNEND-----QQIREGLEKAQRLLKQSQKR 382
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 9e-22
Identities = 56/451 (12%), Positives = 127/451 (28%), Gaps = 118/451 (26%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
Y S+ ++ L+ +G GQL A F A
Sbjct: 5 HHHSSGVDLGTENLYFQSMADVEKHLE------------LGKKLLAAGQLADALSQFHAA 52
Query: 224 LQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281
+ DP+N A A + + ++AA + + + ++ A
Sbjct: 53 VDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVIQLKMDFTAA----------- 96
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY------------M 329
+G ++A +
Sbjct: 97 --------------------------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE 130
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
+ + + GD+ +A+ +K+LE+ + E + +++
Sbjct: 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190
Query: 390 GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449
G+ KA L+ A+K+ + +A I ++++ G+ E + +
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEA---------------FYKISTLYYQLGDHELSLSEVR 235
Query: 450 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509
+ L LD D +K ++ ++ L
Sbjct: 236 ECL-------KLDQ-------DHKRCFAHYKQVKKLNKLIESAE----------ELIRDG 271
Query: 510 RLLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKV 565
R + A+ Y ++ + + R+ +I + +E L++
Sbjct: 272 RYTD-------ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324
Query: 566 NGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
NAL + L + + +A + + A
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 49/374 (13%), Positives = 110/374 (29%), Gaps = 49/374 (13%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY-YTYLG 97
L KQGK+++ F+++L+ + + + + ++ + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
+ A + +K + + + + + + +GE +A S K +
Sbjct: 151 LNAFGSGDYTA----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-----------GIGLC 206
DN A + + + G + SL + L++
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ G+ A ++ ++ +P E V + + ++ P
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
AL A + + ++ + H L ++ +K
Sbjct: 327 DNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
Y + VK K E I Y L L+ +PDN + +
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLA-------------------LQWHPDNFQNEEEKKKA 424
Query: 386 YVQLGQIEKAQELL 399
+ I A+E+L
Sbjct: 425 EKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 535 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 571
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 572 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 626
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 627 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 686
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 687 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 746
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 747 KKSLLRAIHLAPSN 760
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 4e-31
Identities = 61/445 (13%), Positives = 126/445 (28%), Gaps = 58/445 (13%)
Query: 52 KQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111
+ ++ F + + + E+ A + N L G+ E E
Sbjct: 27 GENSLDDFEDKVFYRTEFQNREFKAT-------MCNLLAYLKHLKGQNE----AALECLR 75
Query: 112 LATQYY--NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL---- 165
A + A + ++ TW + G + V
Sbjct: 76 KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135
Query: 166 ------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRY-KLGQLGKAR 217
G ++ + + +++AL+ P P L I R A
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
++A++L+P+N V LA+ + E +G + ++ A E P L A
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255
Query: 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG------------DYEKA 324
+ + +L + AL P ++ + + Y +K K
Sbjct: 256 FYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 325 GLYYMASVKEINKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
+V + K E L + + A F+K
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Query: 381 ALGHI----YVQLGQIEKAQELLRKAAKIDPRDAQA-------RTLLKKAGEEVP--IEV 427
Q+ +KA + KI+ + + + + K + E
Sbjct: 373 LHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEA 432
Query: 428 LNNIGVIHFEKGEFESAHQSFKDAL 452
L+ + + + + A + + L
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 2e-18
Identities = 68/507 (13%), Positives = 134/507 (26%), Gaps = 118/507 (23%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNL 311
+ F+ + A N LA GQ+ + A + ++ N
Sbjct: 41 RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINK-------PHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y+ G +Y K + G +++ A
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 365 FEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
FEK LE P N E L +L + A + LR+A +++P + + LL
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL----- 215
Query: 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 481
+ + E E + ++AL
Sbjct: 216 ------ALKLHKMREEGEEEGEGEKLVEEAL----------------------------- 240
Query: 482 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 541
E + VL + A+ + + A L + L + + +
Sbjct: 241 -------EKAPGVTD-------VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286
Query: 542 LAAI-------------------AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582
+ K + ++ + +A + N S+L L
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346
Query: 583 NDDWVKAKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 640
D + +A+ F+ + T L GN+ + ++ E +A H + ++
Sbjct: 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-MKCEDKA----IHHFIEGVKI 401
Query: 641 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHV 700
L + + +SK+ + LA +
Sbjct: 402 N--------QKSREKEKMKDKLQKIAKMRLSKN--------------GADSEALHVLAFL 439
Query: 701 YFAQGNFALAMKMYQNCLRKFYYNTDA 727
A + + L A
Sbjct: 440 QELNEKMQQADEDSERGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 4e-17
Identities = 66/494 (13%), Positives = 141/494 (28%), Gaps = 97/494 (19%)
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPS 194
L+ + ++ E A + A ++ +G+ +LE ++A ++
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 195 CPGA--------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Y +G+L + + + + +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ G + +RA + E AL P
Sbjct: 144 WTRLKCGGNQNERAKVCF---------------------------EKALEKK---PKNPE 173
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG----QVQLKLGDFRSAL 362
LA + + ++ + + I + + L +++ + +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA------------ 410
E+ LE P + L++ Y + + +KA ELL+KA + P +A
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 411 ------------------------QARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 444
A LKKA E V + + +H ++E A
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 445 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 504
F+ L K + + ++ + V++ K
Sbjct: 354 EYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSRE 407
Query: 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 564
+ L++I ++ L K +A LA + + +Q + E L+
Sbjct: 408 KEKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 565 VNGKYPNALSMLGD 578
P+A S G+
Sbjct: 459 SGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 49/457 (10%), Positives = 118/457 (25%), Gaps = 103/457 (22%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH------EFIFPYYGLGQVQLKL 355
K+ LA H KG E A + + I + H + + V +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 356 GDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLG--QIEKAQELLRKAAKI 405
G +KV + ++ E G ++ G Q E+A+ KA +
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 406 DPRDAQARTLLKKAGEEVPIEVLNNIGVIHF---EKGEFESAHQSFKDALGDGIWLTLLD 462
P++ E + + + + ++A + A+
Sbjct: 168 KPKNP---------------EFTSGLAIASYRLDNWPPSQNAIDPLRQAI---------- 202
Query: 463 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 522
+ ++ L L + E+ +
Sbjct: 203 --------------------------RLNPDNQYLKVLLALKLHKMREEGEEEGE---GE 233
Query: 523 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582
L L K D A + ++ +IEL+ +AL+ +G
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 583 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 642
V + +++ +L + A
Sbjct: 294 KVFQVMNL-------------------------RENGMYGKRKLLEL----IGHAVAHLK 324
Query: 643 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 702
+ + + + + A Q++ ++ F + V Q+ + +
Sbjct: 325 KADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ-LY 383
Query: 703 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 739
A+ + ++ + + + + + +
Sbjct: 384 QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 4e-13
Identities = 67/502 (13%), Positives = 130/502 (25%), Gaps = 98/502 (19%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K H +NL +S D+E Y K L ++ G +AL
Sbjct: 17 KCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKAT----MCNLLAYLKHLKGQNEAALE 72
Query: 364 NFEKVLEIY---------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414
K E+ + T +Y +G++ Q + K + + +
Sbjct: 73 CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132
Query: 415 LLKKAGEEVPIEVLNNIG--VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 472
+ E+ G + + E A F+ AL
Sbjct: 133 IES-------PELDCEEGWTRLKCGGNQNERAKVCFEKAL-------------------- 165
Query: 473 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 532
E + E + L + + A R +
Sbjct: 166 ----------------EKKPKNPEFTSGLAIASYRL----DNWPPSQNAIDPLRQAIRLN 205
Query: 533 QDYVDAY----LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 588
D L+L + + +LV EAL+ + L + D+ K
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265
Query: 589 AKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT------ 642
A E + A + ++Y +G Y A + + K EL
Sbjct: 266 AIELLKKALEYIP-NNAYLHCQIGC-CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323
Query: 643 -RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 701
+ + + + + A Q++ ++ F + V Q+ +
Sbjct: 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ-L 382
Query: 702 FAQGNFALAMKMYQNCLR---KFYYNT-------------------DAQILLYLARTHYE 739
+ A+ + ++ K D++ L LA
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442
Query: 740 AEQWQDCKKSLLRAIHLAPSNY 761
E+ Q + R +
Sbjct: 443 NEKMQQADEDSERGLESGSLIP 464
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 507 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 566
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 567 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 610
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 611 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 670
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 671 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 726
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 727 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-28
Identities = 58/408 (14%), Positives = 122/408 (29%), Gaps = 62/408 (15%)
Query: 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80
P + S + ++ + +F K E +E + + +
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
+ + Y R EE N+ ++ + G
Sbjct: 198 YK----RSPESYDKADESFTKAARLFEE----QLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
K + A K +E V + + A + +R ++ ++ +AL++ +
Sbjct: 250 KNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-Y 307
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
G + L +A + F +A +LDPEN+ + LA + + N+ A
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK---FDDCETLFSEA 364
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+P A K D
Sbjct: 365 KRKFPEAPEV-------------------------------------PNFFAEILTDKND 387
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---------LGDFRSALTNFEKVLEI 371
++KA Y ++ E+ + Y G+ + K + +F A EK ++
Sbjct: 388 FDKALKQYDLAI-ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
P + + L + +Q I++A L ++A + + + A
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 4e-28
Identities = 47/386 (12%), Positives = 121/386 (31%), Gaps = 50/386 (12%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V+Y+ L + ++ + KA + + + G+ A
Sbjct: 40 VFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Query: 151 FK---IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--------- 198
+ + + ++ +L + + + + A
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 199 ---IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG------ 249
+ + + + + + + D E + L L ++ + A
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 250 ---IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
+ ++K ++ A++L + F + + A+ + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVN 271
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
SY +A + D + Y+ ++ +++ YY GQ+ L ++ A +F+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKAL-KLDS--NNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426
K E+ P+N L + + + + + L +A + P E
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP---------------E 373
Query: 427 VLNNIGVIHFEKGEFESAHQSFKDAL 452
V N I +K +F+ A + + A+
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAI 399
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 70/488 (14%), Positives = 142/488 (29%), Gaps = 58/488 (11%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ + + + Y+ A YY ++ E+ + F Y L + +GD +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKEDPVF---YSNLSACYVSVGDLKKV 58
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQARTLLKKAG 420
+ K LE+ PD + L LG+ A L + D DA +L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML---- 114
Query: 421 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 480
+ + + A L+ +K + + S+
Sbjct: 115 ---------ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165
Query: 481 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 540
F F+ + N E ++ L +
Sbjct: 166 --SFFGIFKPELT-----------FANYDESNEA-----DKELMNGLSNLYKRSPESYDK 207
Query: 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 600
+ KA + ++ NE K+ K +L G + +D + A E + A +
Sbjct: 208 ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267
Query: 601 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 660
+SY Y A + ++ + + + + ++N G
Sbjct: 268 PRVNSY--------IYMALIMADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQ 312
Query: 661 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 720
+ +D + F + +E + +I LA + + + F ++ RK
Sbjct: 313 MNFILQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRK 367
Query: 721 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQ 780
F ++ + A + + K AI L + + K + T
Sbjct: 368 F--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425
Query: 781 KTRRTADE 788
T E
Sbjct: 426 PTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 59/493 (11%), Positives = 137/493 (27%), Gaps = 86/493 (17%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
G + ++ ++ A +YYN A + +P + ++ G++++
Sbjct: 9 LKDKGNQFFRNKKYDD----AIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI--GLCRYKL 210
LE D LL +A G+++D++ +I + L + +
Sbjct: 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+L + A E + + M F I+
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT------SMASFFGIFKPELTF 177
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY-HSKGDYEKAGLYYM 329
NY + E E ++N SY S+ + +E+
Sbjct: 178 ANYDES----------NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++ + G + D A + +K +E++P + + I
Sbjct: 228 ---EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADR 283
Query: 390 GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449
+ KA K+D ++ + G ++F ++ A + F
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSV---------------YYHRGQMNFILQNYDQAGKDFD 328
Query: 450 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509
A E D ++ + +
Sbjct: 329 KAK------------------------------------ELDPENIFPYIQLACLAYREN 352
Query: 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569
+ + + K+ + + A I +N+ +++ + A+++ K
Sbjct: 353 KFDDCETL-------FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405
Query: 570 PNALSMLGDLELK 582
+ L K
Sbjct: 406 DGIYVGIAPLVGK 418
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 60/424 (14%), Positives = 132/424 (31%), Gaps = 90/424 (21%)
Query: 69 PEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP 128
+ ++ + ER A+ G I+T E L+TQ + + P
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE---LSTQPAKERKDKQENLP 159
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------QACVEFNR--G 176
S + E + + EAD++ + L +A F +
Sbjct: 160 SV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
+ + L+ ++ ++ G+ ++ A + ++A++L P V + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISL-EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
+A+ I + + + AL
Sbjct: 276 MAL----------IMADRNDSTEYYNYF---------------------------DKALK 298
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
S YY+ + +Y++AG + + E++ E IFPY L + +
Sbjct: 299 ---LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-ELDP--ENIFPYIQLACLAYREN 352
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA------ 410
F T F + +P+ E I +KA + A +++ +
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412
Query: 411 --------------------QARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSF 448
+A LL+KA + P + + + ++ + + A F
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Query: 449 KDAL 452
+++
Sbjct: 473 EESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-23
Identities = 72/607 (11%), Positives = 165/607 (27%), Gaps = 126/607 (20%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
KG + + A + LE D V + + G +E +AL+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVALAVMDLQANEAAG 249
+ P + L LG+ A +L D + L E
Sbjct: 68 LKPDYSKVL-LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML--------ERNL 118
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
++ M K++ F L+ + + T++A S++
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA----------SFF 168
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEK 367
+ + + +Y+++ + ++ ++ Y F L +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427
++ +L+ G A E ++KA ++ PR +
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----------------VNS 272
Query: 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 487
+ +I ++ + + F AL
Sbjct: 273 YIYMALIMADRNDSTEYYNYFDKAL----------------------------------- 297
Query: 488 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 547
+ D N+ V ++ ++ + + A + + + Y++LA +A
Sbjct: 298 -KLDSNNSS-------VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Query: 548 ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 607
N L +EA + + P + ++ +D+ KA + + A
Sbjct: 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI---------- 399
Query: 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 667
+ KL+ ++ A L
Sbjct: 400 ----------------ELENKLDGIYVGIA-------------PLVGKATLLTRNPTVEN 430
Query: 668 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 727
F + +L + + + I LA + Q + A+ +++ +
Sbjct: 431 FIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
Query: 728 QILLYLA 734
+ A
Sbjct: 486 LQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 1e-19
Identities = 62/566 (10%), Positives = 153/566 (27%), Gaps = 105/566 (18%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G ++ + A + + AL+L +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKED---------------------------------- 38
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ + L+ + G V +++ AL + P S A + G +
Sbjct: 39 ----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A + I P + + + + + +
Sbjct: 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 443
+ + K + A ++ E + + ++
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFAN----YDESNEADKELMNGLSNLYKRSPESYDK 207
Query: 444 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 503
A +SF A +D + + K+
Sbjct: 208 ADESFTKAARL-----------FEEQLDKNNEDEKLKE------------------KLAI 238
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
L + +D + A + + + V++Y+ +A I RN+ ++AL
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 564 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 623
K++ + G + ++ +A + F A + D ++ + + L E
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC-----LAYRE 351
Query: 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683
+ + + L++ + N +L +K FD + + E +
Sbjct: 352 NK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 684 GSVFVQMPDVWINLAHVY---------FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 734
++ +++ +A + NF A + + + Q + LA
Sbjct: 404 -----KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLA 456
Query: 735 RTHYEAEQWQDCKKSLLRAIHLAPSN 760
+ + E + + LA +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTM 482
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 56/328 (17%), Positives = 106/328 (32%), Gaps = 21/328 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W+ + Q + V + + E + P + G ++ F + A+
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A + +G+ + + A A QR L+L P N++AL+ALAV + + A
Sbjct: 94 QDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---------N 299
E ++ + P + T + + V N
Sbjct: 153 -----CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L +H G++ +A + A++ +P E + LG
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRP-EDYSLWNRLGATLANGDRSE 264
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
A+ + + LEI P + LG + LG +A A + + + + A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 420 GEEVPIEVLNNIGVIHFEKGEFESAHQS 447
L I + ++ E A
Sbjct: 325 ISGNIWAAL-RIALSLMDQPELFQAANL 351
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 50/404 (12%), Positives = 110/404 (27%), Gaps = 59/404 (14%)
Query: 252 KGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV----TNHGPTKSH 306
+ ++ E + +A + + Q + + T +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ +GD L+ A++ + P + LG Q + + ++A+ +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG-DAEAWQFLGITQAENENEQAAIVALQ 123
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426
+ LE+ P+N + L AL Y + A E L+ K +P+
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL-------------- 169
Query: 427 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 486
+ N + G V +
Sbjct: 170 -VKNKKGSPGLTRRMSKSPVDSSVLEG---------------VKELYLEAAHQN------ 207
Query: 487 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 546
G+ ++ + L L + A + L + + RL A
Sbjct: 208 -----GDMID-----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257
Query: 547 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-----SDATD 601
+ + ++E AL++ + + LG + + +A F A
Sbjct: 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Query: 602 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 645
+ + +S W + P+L ++ R
Sbjct: 318 QQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 6e-17
Identities = 58/401 (14%), Positives = 116/401 (28%), Gaps = 63/401 (15%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
A ++ + W + E+ + + + E + + +
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ G K+ + + A D + W G + A A +
Sbjct: 69 F-EEGLKRLKEGDLPV----TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYK-- 209
LE +N+ AL+ A N D+ E K ++ +P ++ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 210 ------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
L ++ + A + + ++ DLQ + + RA +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDP-------DLQTGLGV-LFHLSGEFNRAIDA 235
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ AL V P + L + + E+
Sbjct: 236 F---------------------------NAALTVR---PEDYSLWNRLGATLANGDRSEE 265
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A Y ++ EI +P FI Y LG + LG +R A++NF L + + +
Sbjct: 266 AVEAYTRAL-EI-QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 384 -----HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+I+ L + + D L +A
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDV---LLRA 360
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 439 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 497
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 498 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 557
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 558 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 617
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 618 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 673
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 674 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 727
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 728 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 782
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 45/384 (11%), Positives = 90/384 (23%), Gaps = 95/384 (24%)
Query: 355 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 407 PRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 466
+D G+ ++G+ + A+
Sbjct: 62 FKDWPG---------------AFEEGLKRLKEGDLPVTILFMEAAI-------------- 92
Query: 467 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 526
D E W L + + AA V +
Sbjct: 93 ----------------------LQDPGDAEA-WQ------FLGITQAENENEQAAIVALQ 123
Query: 527 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDL 579
L + + A + LA ++ Q + E + +K N KY + + +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 580 ELKNDDWVKAKET----FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE 635
D + AA D D LG
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV-----LFHLSGE--------FN 230
Query: 636 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI 695
+A + + + + N G LA + + + + +T+ E G +
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI-----RSRY 285
Query: 696 NLAHVYFAQGNFALAMKMYQNCLR 719
NL G + A+ + L
Sbjct: 286 NLGISCINLGAYREAVSNFLTALS 309
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 69/413 (16%), Positives = 127/413 (30%), Gaps = 97/413 (23%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQLLL 139
L+A + LG T ++ S+ +G+ L
Sbjct: 9 LSASAENVSSLGLGSGGG---------GTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 140 AKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRALQVHP 193
G+ + F+ ++A +++ L LG A F G Y+ +++++K L +
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY--FYLGDYNKAMQYHKHDLTLAK 117
Query: 194 SCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
S A G +G +G+ +A +R L L
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL------------------ARQL 159
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG------- 301
G R AL L N + G+H + V
Sbjct: 160 GDRLSE-------------GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206
Query: 302 -------------PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPY 345
+ + NL +Y+ GD++ A ++ + +E
Sbjct: 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELL 399
LG + LG F A ++++ L + ++ +LG+ Y L + A E
Sbjct: 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326
Query: 400 RKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ I A+ L + GE ++G H G E A + + L
Sbjct: 327 NRHLAI------AQELGDRIGE---ARACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-17
Identities = 56/388 (14%), Positives = 102/388 (26%), Gaps = 97/388 (25%)
Query: 46 IAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101
G F+ ++ + AI + LG Y YLG
Sbjct: 54 EGERLCNAGDCRAGVAFFQAAIQA---------GTEDLRTLSAIYSQLGNAYFYLGDYNK 104
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEAD 158
A QY+ L LAK + +A S
Sbjct: 105 -----------AMQYHKHD----------------LTLAKSMNDRLGEAKS--------- 128
Query: 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLG-IGLCRYKLGQL 213
GR+ ++ +R L + L +G + G+
Sbjct: 129 ------SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182
Query: 214 GKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269
R + + A+ L + R
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLK------------------LMRDLGDRGAQGR 224
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A L N ++ G + + L + + + NL S+ G +E A
Sbjct: 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284
Query: 327 YYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
+Y + E+ + Y LG L +F +A+ + L I
Sbjct: 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ + +G E+A + + ++
Sbjct: 345 ACWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 59/440 (13%), Positives = 120/440 (27%), Gaps = 95/440 (21%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGD 357
G S S S G + + + G+ GD
Sbjct: 4 GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 358 FRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413
R+ + F+ ++ ++ LG+ Y LG KA + + + A+
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------AK 117
Query: 414 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 473
++ + GE + N+G G F+ A + L + L
Sbjct: 118 SMNDRLGE---AKSSGNLGNTLKVMGRFDEAAICCERHL--TLARQL------------- 159
Query: 474 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 533
G+ + + L+NL + + + +
Sbjct: 160 ------------------GDRLS----EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE 197
Query: 534 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 593
+A Q +++L L G A LG+ D+ A E
Sbjct: 198 AL----------TRAVEFYQENLKL-MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246
Query: 594 RAA---SDATDGKDSYATLSLGNW-NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 649
+ + + + + N N L + A A H ++ L + +
Sbjct: 247 QERLRIAREFGDRAAERR-ANSNLGNSHIFLGQFEDA----AEHYKRTLALA-VELGERE 300
Query: 650 SNLYAANGAGVVLAEKGQFDVSKDLFTQ-----------VQEAASGSVFVQMPDVWINLA 698
+ G +F+ + + + + EA + +L
Sbjct: 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA----------CWSLG 350
Query: 699 HVYFAQGNFALAMKMYQNCL 718
+ + A G A+K + L
Sbjct: 351 NAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-13
Identities = 47/334 (14%), Positives = 89/334 (26%), Gaps = 60/334 (17%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP----STWVGKGQLLLAK 141
L G G ++ A + + + + G
Sbjct: 51 LALEGERLCNAGDCRA-----------GVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL 99
Query: 142 GEVEQASSAFKIVLE-----ADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQVHPSC 195
G+ +A K L DR G GR+ ++ +R L +
Sbjct: 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159
Query: 196 PG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANE 246
L +G + G+ R + + A+ L + +
Sbjct: 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK-LMRDLGD 218
Query: 247 AAGI-----------------RKGMEKMQRAFEIY------PYCAMALNYLANHFFFTGQ 283
+ +E Q I A + L N F GQ
Sbjct: 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278
Query: 284 HFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINK 337
+ + LA+ ++ S Y+L +Y ++ A Y+ + +E+
Sbjct: 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
+ LG +G AL E+ L++
Sbjct: 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 58/441 (13%), Positives = 120/441 (27%), Gaps = 110/441 (24%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 400
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 401 KAAKIDPRD--AQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 458
A + D + + +G +F G++ A Q K L
Sbjct: 73 AAIQAGTEDLRTLSAIY-------------SQLGNAYFYLGDYNKAMQYHKHD------L 113
Query: 459 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 518
TL ++ + + NL L+ +
Sbjct: 114 TL---------------------------AKSMNDRLGE----AKSSGNLGNTLKVMGRF 142
Query: 519 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578
A++ L + D + +A NL GK+ +
Sbjct: 143 DEAAICCERHLTLARQLGDRL----SEGRALYNLGN-------VYHAKGKHLGQRNPGKF 191
Query: 579 LELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGN----W----NYFAALRNEKRAP 627
+ + +A E ++ + + + GN + ++ AA+ + +
Sbjct: 192 GDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR-ACGNLGNTYYLLGDFQAAIEHHQER- 249
Query: 628 KLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 686
L A+E R + SNL G GQF+ + + + + + ++
Sbjct: 250 ------LRIAREFGDRAAERRANSNL------GNSHIFLGQFEDAAEHYKR-----TLAL 292
Query: 687 FVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTD-AQILLYLART 736
V++ + +L + Y F A++ + L ++ A+ L
Sbjct: 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352
Query: 737 HYEAEQWQDCKKSLLRAIHLA 757
H + K + + LA
Sbjct: 353 HSAIGGHERALKYAEQHLQLA 373
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-26
Identities = 45/313 (14%), Positives = 100/313 (31%), Gaps = 48/313 (15%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + Q ++ + + + +++ ++ Q P A R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+GL + + + G A A A LDP+++ ALAV + AA + ++
Sbjct: 61 -LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRA 114
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
P + + + + +
Sbjct: 115 WLLSQPQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPN 152
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+Y + A++ E+N P + LG + ++ SA N + +E+ PD+ +
Sbjct: 153 EYRECRTLLHAAL-EMN-P-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439
LG + ++A + +A I+P + N+ V +
Sbjct: 210 NKLGATLANGNRPQEALDAYNRALDINPGYVRVM---------------YNMAVSYSNMS 254
Query: 440 EFESAHQSFKDAL 452
+++ A + A+
Sbjct: 255 QYDLAAKQLVRAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 42/346 (12%), Positives = 101/346 (29%), Gaps = 36/346 (10%)
Query: 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LL 166
H + Y + + +G +L + +A+ AF+ V +A + A L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
G E + ++ A + P + + A + + L
Sbjct: 62 GLTQAE--NEKDGLAIIALNHARMLDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLS 118
Query: 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
P+ + D+ ++ + F ++
Sbjct: 119 QPQYEQLGSVNLQADVDIDDLNVQSED----------------------FFFAAPNEYRE 156
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
L AL + P + + +L Y+ +Y+ A +V+ +P + +
Sbjct: 157 CRTLLHAALEM---NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRP-DDAQLWN 210
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
LG + AL + + L+I P + + Y + Q + A + L +A +
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 407 PRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ + + ++ + ++ +
Sbjct: 271 VGGTTPTGEASREATR---SMWDFFRMLLNVMNRPDLVELTYAQNV 313
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 8e-19
Identities = 30/342 (8%), Positives = 74/342 (21%), Gaps = 80/342 (23%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+ L + A + + W G +
Sbjct: 25 MEEGLSMLKLANLA-----------EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------- 198
A A D ++ A N + +L + L P
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 199 ------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
+ + R AL+++P + + +L V +
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV----------LYN 183
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A A+ + P + + L
Sbjct: 184 LSNNYDSAAANL---------------------------RRAVELR---PDDAQLWNKLG 213
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ + ++A Y ++ +IN P ++ Y + + + A + + +
Sbjct: 214 ATLANGNRPQEALDAYNRAL-DIN-P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 373 PDNCETL------------KALGHIYVQLGQIEKAQELLRKA 402
+ + + + + +
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 5e-18
Identities = 56/334 (16%), Positives = 106/334 (31%), Gaps = 29/334 (8%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G + Y E N P+ + G LKL + A FE V + P+ E
Sbjct: 1 GHMLQNNTDYP---FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEK 438
++LG + + A L A +DP+D + V H +
Sbjct: 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV---------------HAALAVSHTNE 102
Query: 439 GEFESAHQSFKDALG-----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 493
+A S + L + + L + ++ + F + +
Sbjct: 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162
Query: 494 H-VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 552
+E+ N + +L L ++ +A+ R + D + +L A N
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222
Query: 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-----SDATDGKDSYA 607
Q +++ N AL +N Y + + + A + A T ++
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282
Query: 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 641
+ W++F L N P L + E +
Sbjct: 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 27/210 (12%), Positives = 58/210 (27%), Gaps = 7/210 (3%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTY-LGKIETKQREKEEHFILATQYYNKASRIDMHEP 128
Y + + + E E + A ++ ++
Sbjct: 117 LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE----CRTLLHAALEMNPNDA 172
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188
G L + A++ + +E D+ N R ++L+ Y RA
Sbjct: 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232
Query: 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
L ++P + + + Q A + RA+ + + + +
Sbjct: 233 LDINPGYVRV-MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR-EATRSMWD 290
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHF 278
R + M R + A + A F
Sbjct: 291 FFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 22/173 (12%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ--------YYNKAS 121
+D V AL V +T
Sbjct: 83 MLDPKDIAV-------HAALAVSHTNEHNAN----AALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
+ + A E + + LE + ++ + Y +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 182 LEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+RA+++ P +LG L + +A A+ RAL ++P V
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATL--ANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 32/255 (12%), Positives = 64/255 (25%), Gaps = 36/255 (14%)
Query: 534 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 593
Y + + NL + + + A LG + +N+ A
Sbjct: 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78
Query: 594 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEA-THLEKAKEL--------YTRV 644
A D KD +L + NE A A L +
Sbjct: 79 NHARML-DPKDIAVHAALAV-----SHTNEHNAN--AALASLRAWLLSQPQYEQLGSVNL 130
Query: 645 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704
+ A ++ + L E + +L +Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND-----AQLHASLGVLYNLS 185
Query: 705 GNFALAMKMYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758
N+ A + + + + L T + Q+ + RA+ + P
Sbjct: 186 NNYDSAAANLRRAVELRPDDAQLWNK--------LGATLANGNRPQEALDAYNRALDINP 237
Query: 759 SNYTLRFDAGVAMQK 773
+ ++ V+
Sbjct: 238 GYVRVMYNMAVSYSN 252
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 37/249 (14%), Positives = 78/249 (31%), Gaps = 16/249 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++E Y +A ++H Y+ G+ A A++ E
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 233 A--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+++ + + + +++ E Y ++ + A+ +
Sbjct: 74 DYKVISKSFARIGNAYHK-----LGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKK 127
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E V P K+ + Y +K D+ A Y +K P E Y
Sbjct: 128 AEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-P-EDARGYSNRAA 181
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 411 QARTLLKKA 419
+ +
Sbjct: 242 NGSSAREID 250
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 24/268 (8%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+G + ++A + E +D L +A E+ +G Y ++ A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQANEAAG 249
++ I ++G ++ ++ +++ A + L+ E
Sbjct: 67 QGREMRADYKV-ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE- 124
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKS 305
++K + + P A +F A+ P +
Sbjct: 125 ----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDW-------PNAVKAYTEMIKRAPEDA 173
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
Y N A + + +A ++ E + F+ Y Q+ + ++ SAL
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDP--NFVRAYIRKATAQIAVKEYASALETL 230
Query: 366 EKVLEIYPDNCE--TLKALGHIYVQLGQ 391
+ + + + + +Y + Q
Sbjct: 231 DAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 38/295 (12%), Positives = 90/295 (30%), Gaps = 65/295 (22%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + + ++ +++A +Y + E++K + + + G++ +
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITY---LNNRAAAEYEKGEYET 56
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ------ART 414
A++ +E + K + + ++G L+K + + T
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116
Query: 415 LLKKAGEEVP------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 462
L+ A +E+ E G +F K ++ +A +++ + +
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI---------- 166
Query: 463 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 522
+ N+ L L E I D
Sbjct: 167 --------------------------KRAPEDARGYSNRAAALAKLMSFPEAIAD----- 195
Query: 523 VLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
+ K ++V AY+R A A ++E ++ A + + N S
Sbjct: 196 --CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 33/249 (13%), Positives = 63/249 (25%), Gaps = 60/249 (24%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G YK Q +A + + +A +L ++ L A + + A
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAA----------AEYEKGEYETAIST 60
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A+ G Y +++S+ G+
Sbjct: 61 L---------------------------NDAVEQ---GREMRADYKVISKSFARIGNAYH 90
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+++ K + + KL + L E + P+ E + G
Sbjct: 91 KLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 443
Y A + + K P DA+ +N + F
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARG---------------YSNRAAALAKLMSFPE 191
Query: 444 AHQSFKDAL 452
A A+
Sbjct: 192 AIADCNKAI 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 50 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK----IET 101
+++G+ + +E+G E+ Y +G Y LG IE
Sbjct: 48 EYEKGEYETAISTLNDAVEQG--REMRADY----KVISKSFARIGNAYHKLGDLKKTIEY 101
Query: 102 KQREKEEH-----------FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
Q+ EH + + ++ + +G+ K + A A
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ +++ ++ +A + +++ +A++ P+ A IR +
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT--AQIA 219
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ + A + A D E A + L
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 26/252 (10%), Positives = 53/252 (21%), Gaps = 60/252 (23%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G K F A+ ++ K E++ D L + G+ E A L A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
I G K + K
Sbjct: 67 QGREMRAD---------------YKVISKSFARIGNAYHKLGDLKKTI-------EYYQK 104
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
+ T +L L +++
Sbjct: 105 SLTE------------------------------HRTADILTKLRNAEKELKK------- 127
Query: 525 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584
+ + + +++ +++ E +K + S K
Sbjct: 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM 187
Query: 585 DWVKAKETFRAA 596
+ +A A
Sbjct: 188 SFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 597 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 656
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 716
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 717 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 771 MQKFSAS 777
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 485
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 486 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 545
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 546 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 599
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 600 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 659
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 660 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 719
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 720 KFYYNTDAQILLYLARTHYEAEQ 742
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 28/272 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR---QAF 220
A F Y++++E + + + P +C Y+L + A+ + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETY 63
Query: 221 QRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278
+ M + A +++ Q A + + ++F
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLA-----IQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ G L Q E + T T +Y L ++Y+ +Y KA ++ + E+
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKP- 173
Query: 339 HEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYV 387
Y + A +EK++E+ K + + Y
Sbjct: 174 -NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
KA + +DP + +A LK
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMK 264
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 2e-22
Identities = 35/316 (11%), Positives = 74/316 (23%), Gaps = 66/316 (20%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAG 325
A+ F + A+ V N + Y A Y+ Y+ A
Sbjct: 5 VEFRYADFLFKNNNY-------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
++N + G++ +K G A+ ++ ++ + +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 445
+ G A + + K + D + +G ++ E+ A
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKV---------------FYELGQAYYYNKEYVKAD 162
Query: 446 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 505
SF L E N +
Sbjct: 163 SSFVKVL------------------------------------ELKPNIYIGYLWRARAN 186
Query: 506 FNLARLLEQ---IHD-TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 561
+Q V + ++A +A + +
Sbjct: 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246
Query: 562 ALKVNGKYPNALSMLG 577
L ++ A+ L
Sbjct: 247 ILALDPTNKKAIDGLK 262
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-22
Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 44/304 (14%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
K E A + +NK + P + + + + A +
Sbjct: 6 EFRYADFLFKNNNYAE----AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 153 IVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
+ + +G+ S +++ Y+ A+ + IG Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG-QIGSYFYN 120
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
G A Q ++ ++ + + L + A + E+ P
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA-----DSSFVKVLELKPNI 175
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ + A + LA K YEK +
Sbjct: 176 YIGYLWRARANAAQDPD----------------------TKQGLA-----KPYYEKL-IE 207
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
A K E I + D A ++ +L + P N + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 388 QLGQ 391
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 36/281 (12%), Positives = 68/281 (24%), Gaps = 74/281 (26%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA--LVALAVMDLQANEAAGIRKGMEKMQRAF 261
+K +A + F + + A+ +L + A +K +E
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLA--QKDIETYFSKV 67
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ + + KG
Sbjct: 68 NATKAKSAD-------------------------------------FEYYGKILMKKGQD 90
Query: 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381
A Y A+V + + + Y +G G+F A+ EK + + +
Sbjct: 91 SLAIQQYQAAV-DRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE 147
Query: 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL--------------------KKAGE 421
LG Y + KA K ++ P +K E
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Query: 422 EVP----------IEVLNNIGVIHFEKGEFESAHQSFKDAL 452
IE I + + A ++K+ L
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-17
Identities = 39/304 (12%), Positives = 73/304 (24%), Gaps = 75/304 (24%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ A +Y +A + K + Y +L + A + E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEA--KKYNSPYI-YNRRAVCYYELAKYDLAQKDIE 61
Query: 367 ---KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423
+ + G I ++ GQ A + + A D
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM----------- 110
Query: 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 483
IG + KG F A Q + +
Sbjct: 111 ----YGQIGSYFYNKGNFPLAIQYMEKQI------------------------------- 135
Query: 484 LFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 543
+ V + L + + V A + +L + YL A
Sbjct: 136 -----RPTTTDPK-------VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183
Query: 544 AIAKARNNL---QLSIELVNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKET 592
A++ L+ + ++V + A + N D VKA
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243
Query: 593 FRAA 596
++
Sbjct: 244 WKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 37/282 (13%), Positives = 70/282 (24%), Gaps = 52/282 (18%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D+ A FK +E F ++ + R L Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA------KKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 93 -------------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVG 133
+ Y GKI K+ + A Q Y A D +
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQ 113
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G KG A + + + + Y + + + L++ P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 194 SCPGAIRLGIGLCRYKLGQLGK---ARQAFQRALQLDPEN--------VEALVALAVMDL 242
+ L K A+ +++ +++ +EA +A
Sbjct: 174 NIYIGY-LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ K + + P A++ L H
Sbjct: 233 INRD---KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 4e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 537 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 597 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 655
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 656 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 715
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 716 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 760
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 34/307 (11%), Positives = 74/307 (24%), Gaps = 64/307 (20%)
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVI 434
N + + +A E+ K N V
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI---------------YNRRAVC 46
Query: 435 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH 494
++E +++ A + + F + D
Sbjct: 47 YYELAKYDLAQKDIETY---------------------------FSKVNATKAKSAD--- 76
Query: 495 VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 554
++L + A Y+ + + +D Y ++ + + N L
Sbjct: 77 ----------FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPL 126
Query: 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 614
+I+ + + ++ P LG N ++VKA +F L
Sbjct: 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKPNIYIGYLWRAR- 184
Query: 615 NYFAALRNEKRAPKLEA--THLEKAKELYTRVIVQHTSNLYAA-NGAGVVLAEKGQFDVS 671
A + K + EK E+ ++ L A +
Sbjct: 185 ----ANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240
Query: 672 KDLFTQV 678
+ +
Sbjct: 241 DAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 560
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 561 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 620
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 621 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 680
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 681 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 731
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 732 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 62/344 (18%), Positives = 120/344 (34%), Gaps = 51/344 (14%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRA 188
G+ L G+ S F+ ++ +++ L LG A F Y+ +LE++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY--FYLHDYAKALEYHHHD 69
Query: 189 LQVHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLD------PENVEALVAL 237
L + + A G +G LG +A QR L + AL L
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
+ ++ G + + ++ A++ E+ A+
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY-------------EENLSLVTAL 176
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLK 354
+ + ++ NL +++ G++ A + + + KE Y LG +
Sbjct: 177 GDR-AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235
Query: 355 LGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
LG+F +A ++K L + ++ +LG+ Y L EKA + K I
Sbjct: 236 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI--- 292
Query: 409 DAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
A+ L + GE ++G + G + A + L
Sbjct: 293 ---AQELKDRIGE---GRACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 8e-18
Identities = 39/206 (18%), Positives = 63/206 (30%), Gaps = 21/206 (10%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 327 YYMASV---KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA----------QARTLLKKAGEEVPI-E 426
L LG++Y G+ + + +L+ G+
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 184
Query: 427 VLNNIGVIHFEKGEFESAHQSFKDAL 452
N+G H+ G F A + + L
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRL 210
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 54/386 (13%), Positives = 102/386 (26%), Gaps = 90/386 (23%)
Query: 46 IAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101
K G F ++ + AI + LG Y YL
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQ---------VGTEDLKTLSAIYSQLGNAYFYLHDYAK 61
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
A +Y++ + + ++ +A +
Sbjct: 62 -----------ALEYHHHD--LTLAR-----------TIGDQLGEAKA------------ 85
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG----QLGKAR 217
G + +++ +R L + ++G Y LG GK
Sbjct: 86 ---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGK-- 138
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMAL 271
+ + + ++ ++ + + A
Sbjct: 139 ------------SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAF 186
Query: 272 NYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
L N + G E L + + +Y NL +Y G++E A YY
Sbjct: 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246
Query: 329 MAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETL 379
+ +++ Y LG L D+ A+ K L I
Sbjct: 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ Y LG ++A K +I
Sbjct: 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNF 365
GD ++ A+V+ + + + Y LG L D+ AL
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 66
Query: 366 EKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
L + + LG+ LG ++A ++ I +R L K
Sbjct: 67 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI------SRELNDKV 120
Query: 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 462
GE L N+G ++ KG+ L
Sbjct: 121 GE---ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 49/375 (13%), Positives = 95/375 (25%), Gaps = 81/375 (21%)
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQARTLLKKAGEEVPIEVLNNIGV 433
C L G + G A ++ D + + +G
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIY-------------SQLGN 51
Query: 434 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD-----MQLFHR- 487
+F ++ A + L + T+ D + + L+ + R
Sbjct: 52 AYFYLHDYAKALEYHHHDLT--LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109
Query: 488 ---FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 544
+ V L+NL + K
Sbjct: 110 LDISRELNDKVGE----ARALYNLGNVYHA--------------KGKSFGCPGPQDTGEF 151
Query: 545 IAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAA-- 596
RN LQ +++L E L + + A LG+ ++ A
Sbjct: 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211
Query: 597 -SDATDGKDSYATLSLGNW-NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
+ K + + N N + L + A + + +K L R + +
Sbjct: 212 IAKEFGDKAAERR-AYSNLGNAYIFLGEFETA----SEYYKKTLLLA-RQLKDRAVEAQS 265
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQ-----------VQEAASGSVFVQMPDVWINLAHVYFA 703
G ++ + D + + E + +L + Y A
Sbjct: 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA----------CWSLGNAYTA 315
Query: 704 QGNFALAMKMYQNCL 718
GN AM + L
Sbjct: 316 LGNHDQAMHFAEKHL 330
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 38/259 (14%), Positives = 83/259 (32%), Gaps = 15/259 (5%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ V + + + A + +GL + G +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDA-YIQLGLGYLQRGNTEQAKVP 59
Query: 220 FQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
++AL++DP + +A ALAV + A E+ ++A A LN
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLA-----DEEYRKALASDSRNARVLNNYGGF 114
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ ++ Q A T + P +S + NL +A Y+ S+ +N+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKSL-RLNR 172
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+ + K ++ A ++ + N +L + + A
Sbjct: 173 --NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 398 LLRKAAKIDPRDAQARTLL 416
+ ++ P + +
Sbjct: 231 YGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 5e-22
Identities = 48/296 (16%), Positives = 87/296 (29%), Gaps = 62/296 (20%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + H +++ ++ +K E Y LG L+ G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQN------PLKTDKGRDEARDAYIQLGLGYLQRGNTEQ 55
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAG 420
A K LEI P + + AL ++ + + A E RKA D R+A+
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV-------- 107
Query: 421 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 480
LNN G +E+ +E A+Q +A D + Y +
Sbjct: 108 -------LNNYGGFLYEQKRYEEAYQRLLEASQDTL-----------YPERSRV------ 143
Query: 481 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 540
NL + Q+ A + L ++ L
Sbjct: 144 ------------------------FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVAL 179
Query: 541 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
+A + + + + + G+ +L + L +D A
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 51/299 (17%), Positives = 93/299 (31%), Gaps = 70/299 (23%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
IDP A A + V+ + E + A + ++ AL
Sbjct: 66 IDPSSADA---------------HAALAVVFQTEMEPKLADEEYRKAL------------ 98
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
+D + VL N L + A
Sbjct: 99 ------------------------ASDSRNAR-------VLNNYGGFLYEQKRYEEAYQR 127
Query: 525 YR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 582
Y + + L ++ + E ++L++N P+ + DL K
Sbjct: 128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187
Query: 583 NDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 641
++V A++ + + G + +L LG + A A++ + K LY
Sbjct: 188 EREYVPARQYYDLFAQG--GGQNARSLLLG-IRLAKVFEDRDTA----ASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ L K D ++ + Y ++G EQ R+ LE ID AD
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE------IDPSSADA--- 73
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
AL V + + + LA + Y KA D G L +
Sbjct: 74 ----HAALAVVFQTEMEPK-----------LADEEYRKALASDSRNARVLNNYGGFLYEQ 118
Query: 142 GEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
E+A + + V + + + E+++++L+++ + P
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + YK + ARQ + Q +N +L+ + + +
Sbjct: 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA---SYGLQ 234
Query: 260 AFEIYPYCAMALNYLAN 276
+YP + A
Sbjct: 235 LKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 533 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 592
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 593 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 652
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 653 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 711 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 565
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 566 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 624
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 625 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 684
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 685 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 731
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 45/345 (13%), Positives = 108/345 (31%), Gaps = 35/345 (10%)
Query: 112 LATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
L + Y+K + + + + +G L +G++ A F+ ++ D ++ A
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ +R L++ P A + + + +A + + L+
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTA-LMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
P + A + V
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGP----------------------SKRILGSLLSDSLFLEV 200
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
++L A+ + + L ++ G+Y+KA + A++ +P +
Sbjct: 201 KELFLAAVRL-DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RP-NDYLLWNK 256
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG A+ + + LE+ P + LG + LG +A E +A +
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ R E + + + + G+ ++ + L
Sbjct: 317 KSRGPRGEGGAMSE----NIWSTLRLALSMLGQSDAYGAADARDL 357
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 57/314 (18%), Positives = 108/314 (34%), Gaps = 50/314 (15%)
Query: 145 EQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
+ S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 258
+G + + Q A A +R L+L P+N AL+ALAV + A E ++
Sbjct: 103 Y-LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILR 156
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
P A + GP+ + S S
Sbjct: 157 DWLRYTPAYAHLVTPAEE-----------------GAGGAGLGPS-----KRILGSLLSD 194
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
+ + ++A+V ++ GLG + G++ A+ F L + P++
Sbjct: 195 SLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEK 438
LG Q E+A R+A ++ P ++R N+G+
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR---------------YNLGISCINL 298
Query: 439 GEFESAHQSFKDAL 452
G A + F +AL
Sbjct: 299 GAHREAVEHFLEAL 312
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 2e-18
Identities = 66/419 (15%), Positives = 123/419 (29%), Gaps = 77/419 (18%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF-EIYPYCAMALNYLANHF 278
F+RA +V+ +K+Q E+ A A +L+++
Sbjct: 3 FERAKSAIESDVDFW--------------------DKLQAELEEMAKRDAEAHPWLSDYD 42
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHS-YYNLARSYHSKGDYEKAGLYYMASVKEINK 337
T + + P + H + +GD A L + A+V++
Sbjct: 43 DLTSATY------DKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--D 94
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
P + + + LG Q + A++ + LE+ PDN L AL + +A E
Sbjct: 95 P-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 153
Query: 398 LLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 457
+LR + P A T ++ + I F + F A+
Sbjct: 154 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV----- 208
Query: 458 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 517
D ++ V L L +
Sbjct: 209 -------------------------------RLDPTSID-----PDVQCGLGVLFNLSGE 232
Query: 518 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 577
A + L + + +L A N + ++ AL++ Y + LG
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292
Query: 578 DLELKNDDWVKAKETFRAA----SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEA 631
+ +A E F A + + +S W+ AL ++ A
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 7e-17
Identities = 66/411 (16%), Positives = 123/411 (29%), Gaps = 88/411 (21%)
Query: 33 LKAEQAPLDLWLIIAREY----FKQGKVEQFRQILEEGSSPEIDEYYA---DVRYERIAI 85
A ++ +D W + E + + + ++ +S D+ Y +
Sbjct: 7 KSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQ 66
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 145
G+ G + A + A + D W G +
Sbjct: 67 PFEEGLRRLQEGDLP-----------NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI------ 199
A SA + LE DN AL+ A N + E + L+ P+ +
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 200 --RLGIGLCRYKLGQLGK------ARQAFQRALQLDPENVEALV--ALAVMDLQANEAAG 249
G+G + LG L ++ F A++LDP +++ V L V
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV---------- 225
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + +A + + AL+V P +
Sbjct: 226 LFNLSGEYDKAVDCF---------------------------TAALSVR---PNDYLLWN 255
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L + + E+A Y ++ E+ +P +I Y LG + LG R A+ +F + L
Sbjct: 256 KLGATLANGNQSEEAVAAYRRAL-EL-QP-GYIRSRYNLGISCINLGAHREAVEHFLEAL 312
Query: 370 EIYPDNCETLKALGHIY-----------VQLGQIEKAQELLRKAAKIDPRD 409
+ + G + LGQ + +
Sbjct: 313 NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 489 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 548
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 549 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 607
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 608 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 665
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 666 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 719
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 720 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 56/374 (14%), Positives = 110/374 (29%), Gaps = 60/374 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G+ L G+ S F+ ++ +++ F Y+ +LE++ L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 191 VHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------- 229
+ + A G +G LG +A QR L + E
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 230 -------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLAN 276
+ V + ++ ++ + + A L N
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN 195
Query: 277 HFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS-- 331
+ G E L + + +Y NL +Y G++E A YY +
Sbjct: 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255
Query: 332 -VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGH 384
+++ Y LG L D+ A+ K L I +LG+
Sbjct: 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315
Query: 385 IYVQLGQIEKAQELLRKA----AKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE 440
Y LG ++A K ++ + + L + ++ +G+ +
Sbjct: 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS------DLQMVLGLSYSTNNS 369
Query: 441 FESAHQSFKDALGD 454
S + +L
Sbjct: 370 IMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-21
Identities = 61/333 (18%), Positives = 106/333 (31%), Gaps = 53/333 (15%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV---HPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
L + G + F++ A+QV AI +G + L KA +
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70
Query: 221 QRALQLDPE-NVEALVALAVMDL-QANEAAG-IRKGMEKMQRAFEIY------PYCAMAL 271
L L + A A +L + G + + QR +I A AL
Sbjct: 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL 130
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPT--KSHSYY-------------------- 309
L N + G+ F + + +Y
Sbjct: 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAF 190
Query: 310 -NLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
NL +++ G++ A + + + KE Y LG + LG+F +A +
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 366 EKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+K L + ++ +LG+ Y L EKA + K I A+ L +
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI------AQELNDRI 304
Query: 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
GE ++G + G + A + L
Sbjct: 305 GEG---RACWSLGNAYTALGNHDQAMHFAEKHL 334
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 8e-17
Identities = 39/206 (18%), Positives = 63/206 (30%), Gaps = 21/206 (10%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 327 YY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA----------QARTLLKKAGEEVPI-E 426
L LG++Y G+ + + +L+ G+
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 427 VLNNIGVIHFEKGEFESAHQSFKDAL 452
N+G H+ G F A + + L
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRL 214
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNF 365
GD ++ A+V+ + + + Y LG L D+ AL
Sbjct: 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH 70
Query: 366 EKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
L + + LG+ LG ++A ++ I +R L K
Sbjct: 71 HHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI------SRELNDKV 124
Query: 420 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 462
GE L N+G ++ KG+ L
Sbjct: 125 GE---ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 11/80 (13%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432
+C L G + G A ++ D + + + +G
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL-----------SAIYSQLG 54
Query: 433 VIHFEKGEFESAHQSFKDAL 452
+F ++ A + L
Sbjct: 55 NAYFYLHDYAKALEYHHHDL 74
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 6e-24
Identities = 53/576 (9%), Positives = 136/576 (23%), Gaps = 65/576 (11%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ + + A V+Q D V A+ +
Sbjct: 448 LLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
L +A + P AI G + L + + +A L P+ V
Sbjct: 508 QALATVQRLLPVLCQAHGLTPDQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 233 ALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
A+ + L+ + + + +A + +A+ + +
Sbjct: 567 AIASNGGGKQALETVQRL-----LPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
A +T P + + + + ++ + + + + G
Sbjct: 622 LCQAHGLT---PAQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT--PDQVVAIASNGG 675
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ L + L + + + + + L +++ +L +A + P
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735
Query: 411 QARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG------DGIWLTLLDSK 464
A + + G + A G I + +
Sbjct: 736 VA---------------IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQ 780
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
V + Q L +V + + + + +
Sbjct: 781 ALETVQRLLPVLCQD---------------HGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 525 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584
QD V A +A +Q + ++ + + A++ + +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644
+ T + A+ + LE +++ + +
Sbjct: 886 TVQRLLPVLCQDHGLT-------------LDQVVAIASNGGKQALET--VQRLLPVLCQD 930
Query: 645 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 680
+ A + Q
Sbjct: 931 HGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHG 966
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 1e-20
Identities = 72/695 (10%), Positives = 160/695 (23%), Gaps = 70/695 (10%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A V LG + +Q + + +++A + V Q A G V
Sbjct: 47 PAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAV 106
Query: 147 A-SSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ EA +++ + Q +D+ E LQ+ I G
Sbjct: 107 TYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKI-AKRG 165
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEI 263
L L P V A+ + +A +++ + + +A +
Sbjct: 166 GVTAMEAVHASRNALTGAPLNLTPAQVVAIASNN----GGKQALETVQRLLPVLCQAHGL 221
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P +A+ + + A + P + + + + ++
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP---PDQVVAIASNIGGKQALETVQR 278
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + + G + L + L + + PD + +
Sbjct: 279 LLPVLC---QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 443
L +++ +L +A + P A + + G +
Sbjct: 336 GGKQALETVQRLLPVLCQAHGLTPDQVVA---------------IASNGGGKQALETVQR 380
Query: 444 AHQSFKDALG-----DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 498
A G + + V + Q + V
Sbjct: 381 LLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQ--------AHGLTPDQVVAI 432
Query: 499 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 558
+ L + + L V A +A +Q + +
Sbjct: 433 ASHDGGKQALETVQRLLPVLCQTHGL-------TPAQVVAIASHDGGKQALETVQQLLPV 485
Query: 559 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 618
+ +A + A++ + + A T +
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP-------------DQVV 532
Query: 619 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 678
A+ + K +++ + + + A G + Q
Sbjct: 533 AIAS-NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 591
Query: 679 QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 738
V + A + + +
Sbjct: 592 HGLTQVQV-----VAIASNIGGKQALETVQRLLPVLCQAHG--LTPAQVVAIASHDGGKQ 644
Query: 739 EAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
E Q L +A L P G Q
Sbjct: 645 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 679
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 8e-23
Identities = 47/301 (15%), Positives = 81/301 (26%), Gaps = 62/301 (20%)
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +S +G+ G Y + E + +A++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
+ + +L +A + +AL+LD A + E +
Sbjct: 61 -INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----------VYVVKEMYKE 109
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
A +++ E AL G +Y L
Sbjct: 110 AKDMF---------------------------EKALRA---GMENGDLFYMLGTVLVKLE 139
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A Y +V E+N + G G AL+ F V E P + +
Sbjct: 140 QPKLALPYLQRAV-ELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439
G Y EKA E+L KA I P A L+ ++
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLA---------------LHAKKLLGHHHH 241
Query: 440 E 440
Sbjct: 242 H 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 44/241 (18%), Positives = 77/241 (31%), Gaps = 22/241 (9%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMAL 271
+G + + L P + G K E +A E A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
AN + + AL + + + +YY Y K Y++A + +
Sbjct: 61 INFANLLSSVNELERALAFYDKALELD---SSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ E +Y LG V +KL + AL ++ +E+ ++ E G G
Sbjct: 118 L-RAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174
Query: 392 IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451
+++A + DP A A N GV + K E A + A
Sbjct: 175 LDEALSQFAAVTEQDPGHADA---------------FYNAGVTYAYKENREKALEMLDKA 219
Query: 452 L 452
+
Sbjct: 220 I 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y + + E E A +Y+KA +D + + G G + + K ++A F+
Sbjct: 60 YINFANLLSSVNELER----ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L A +N V + +L + +RA++++ + A R G+C G
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-RFQFGMCLANEGM 174
Query: 213 LGKARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
L +A F + DP + +A + + E A +E + +A +I P +A
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-----LEMLDKAIDIQPDHMLA 229
Query: 271 LNYLANHFFFTGQH 284
L+ H
Sbjct: 230 LHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 9e-14
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
+ G E A + + KA + + ++ LL + E+E+
Sbjct: 27 GQQMGRGSEFGDYEK-----------AAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A + + LE D A G V + Y ++ + +++AL+ +G
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIY 264
KL Q A QRA++L+ + EA + + + + A + + E
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA-----LSQFAAVTEQD 189
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
P A A + + ++ + A+ + P + + H +
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 39/312 (12%), Positives = 73/312 (23%), Gaps = 75/312 (24%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTL 415
+ + + + G EKA E KA + + DA
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP--- 59
Query: 416 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 475
N + E E A + AL
Sbjct: 60 ------------YINFANLLSSVNELERALAFYDKAL----------------------- 84
Query: 476 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 535
E D + + V E + L +
Sbjct: 85 -------------ELDSSAATAYYGAGNVYVVKEMYKEAKDM-------FEKALRAGMEN 124
Query: 536 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 595
D + L + +L++ + A+++N A G +A F A
Sbjct: 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184
Query: 596 ASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 655
+ D + A + G ++ EKA E+ + I ++ A
Sbjct: 185 VT-EQDPGHADAFYNAGV-----TYAYKEN--------REKALEMLDKAIDIQPDHMLAL 230
Query: 656 NGAGVVLAEKGQ 667
+ ++
Sbjct: 231 HAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 493 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 552
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 553 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 612
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 613 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 673 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 719
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 613 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 672
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 673 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 726
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 727 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 3e-21
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 62/265 (23%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ K + G+ QA S F+ + + D +Y +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YYWTNV 46
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ + + L K KA ++ LQ P NV+ L A A M + +
Sbjct: 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--- 103
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + ++ ++ A
Sbjct: 104 EKDALRMYEKILQLEADNLAA-------------------------------------NI 126
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L Y+ + EK L + + Y G +L + A + +KV+
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPT--KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 370 EIYPDNCETLKALGHIYVQLGQIEK 394
+P E K L I ++ +
Sbjct: 185 LRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 7e-18
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 19/213 (8%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV--YYT 94
D L + G+ V FRQ + ++ ++ Y N+ T
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
L K R ++ A +Y + + + ++ + +G+ + A ++ +
Sbjct: 59 ELALAYKKNRNYDK----AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 155 LEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213
L+ + DN+ A + + + LE + L A R GL + +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLSKLFTTRY 173
Query: 214 GKARQAFQRALQLDPENVEALVALAVMDLQANE 246
KAR + Q+ + P + EA L + E
Sbjct: 174 EKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 1e-17
Identities = 31/219 (14%), Positives = 57/219 (26%), Gaps = 28/219 (12%)
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + GQ G+A F++ + L+ + E
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY---------------------YWTN 45
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ + LA + + + L P A +G
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRG 102
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD-FRSALTNFEKVLEIYPDNCET 378
+ A Y + ++ + + LG + + L K L
Sbjct: 103 QEKDALRMYEKIL-QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417
G + + EKA+ L+K P +TL K
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 7e-17
Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 39/181 (21%)
Query: 308 YYNLARSYHSKGDYEKA----------------GLYYMASVKEINKPHEFIFPYYGLGQV 351
+ G +A Y+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---ATELALA 63
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
K ++ A ++++L+ P+N + L+A + V GQ + A + K +++ +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 412 ARTLL------------------KKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 451
A L K G+ +E A S +
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Query: 452 L 452
+
Sbjct: 184 I 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 5e-15
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175
Y+ + ++A +K +L+ +NV L A ++ R
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL-GKARQAFQRALQLDPENVEAL 234
G+ D+L Y++ LQ+ A + +G Y + K + + L + A
Sbjct: 102 GQEKDALRMYEKILQLEADNLAA-NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273
+ L K +Q+ +P
Sbjct: 161 YRDGLSKLFTTR---YEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 4e-13
Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 45/222 (20%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA-GEEVPIEVLNNIGVIH 435
+ + ++ GQ +A R+ ++ + E+ ++ + + +
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 436 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHV 495
+ ++ A+ +K+ L + N+V
Sbjct: 65 KKNRNYDKAYLFYKELL------------------------------------QKAPNNV 88
Query: 496 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA-AIAKARNNLQL 554
+ L A + A +Y IL D + A + L +
Sbjct: 89 D-------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
Query: 555 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
+E + L K A G +L + KA+ + +
Sbjct: 142 KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 5e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 535 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 594
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 595 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 713
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 714 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 761
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 524 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 583
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 584 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 643
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 644 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 678
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 425 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 484
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 485 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 544
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 545 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 603
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 604 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 663
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 664 EKGQFD 669
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 640 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 699
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 700 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 758
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 759 SNYTLRFDAGVAMQK 773
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 37/282 (13%), Positives = 72/282 (25%), Gaps = 31/282 (10%)
Query: 174 NRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ L ++ L + G+ LG AR F +AL + P+
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLL-YERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 230 NVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
E L + +AA E E+ P A ++ G+ L
Sbjct: 76 MPEVFNYLGIYLTQAGNFDAA-----YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
+ P L + + + + K + + +
Sbjct: 131 QDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG + + + + ET LG Y+ LG ++ A L + A +
Sbjct: 188 LGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449
+ + G+ +
Sbjct: 247 HNFVE---------------HRYALLELSLLGQDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 8/275 (2%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L ++E Q + D +G L + G A + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L D G + + E + L++ P+ A L G+ Y G+
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGR 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
A+ Q DP + + L + + + +E + +++ + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
YL N ++ ++ S + + L + Y S GD + A + +V
Sbjct: 187 YLGN-ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
N H F+ + LG + L ++
Sbjct: 243 A--NNVHNFV-EHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 42/286 (14%), Positives = 74/286 (25%), Gaps = 66/286 (23%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ Y Y S G A + ++ I + + LG + G+F +A
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR--PDMPEVFNYLGIYLTQAGNFDAA 96
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
F+ VLE+ P G G+ + AQ+ L + DP D
Sbjct: 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR--------- 147
Query: 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 481
+ + + E + A + K
Sbjct: 148 ------SLWLYLAEQKLDEKQ-AKEVLKQHFEKSD------------------------- 175
Query: 482 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 541
+ W V F L + EQ + + +
Sbjct: 176 --------------KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFY 220
Query: 542 LAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLE 580
L + +L + L A+ N LS+LG +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 32/247 (12%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCA 268
L + Q D E + L V+ L A +A I P
Sbjct: 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA-----RNDFSQALAIRPDMP 77
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
NYL + G + ++ L + PT ++++ N + + G + A
Sbjct: 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDL 134
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFR---SALTNFEKVLEIYPDNCETLKALGHI 385
+A + + F L + KL + + +FEK + LG+I
Sbjct: 135 LAFY-QDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 445
+ +E+ + + ++ +G + G+ +SA
Sbjct: 192 S-EQTLMERLKADATDNTSLAEHLSET---------------NFYLGKYYLSLGDLDSAT 235
Query: 446 QSFKDAL 452
FK A+
Sbjct: 236 ALFKLAV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 44/320 (13%), Positives = 80/320 (25%), Gaps = 80/320 (25%)
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI 431
+ + L Q + + +++L A D AQ L
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQL---------------LYER 49
Query: 432 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 491
GV++ G A F AL
Sbjct: 50 GVLYDSLGLRALARNDFSQAL--------------------------------------- 70
Query: 492 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 551
+ + V L L Q + AA + +L Y A+L
Sbjct: 71 ----AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126
Query: 552 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT--L 609
+L+ + + + + P L E K D+ + + + + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 610 SLGNWN----YFAALRNEKRA----PKLEATH------------LEKAKELYTRVIVQHT 649
LGN + + L T+ L+ A L+ + +
Sbjct: 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 650 SNLYAANGAGVVLAEKGQFD 669
N A + L+ GQ
Sbjct: 247 HNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 564 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 623
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 684 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 743
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 744 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 36/216 (16%), Positives = 62/216 (28%), Gaps = 44/216 (20%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
I+ + + + +A + + AL+ DP+N A + A L+ N+ A E
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA-----QES 64
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
++A I P A N FL +L
Sbjct: 65 FRQALSIKPDSAEINNNYGW--------FLCGRL-------------------------- 90
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
++ Y+ ++ + P G K G F A ++ L P
Sbjct: 91 --NRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
K L + GQ+ A +K
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 9e-14
Identities = 39/249 (15%), Positives = 59/249 (23%), Gaps = 58/249 (23%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDGIWLTLLDS 463
I P A+ NN G + + F AL D
Sbjct: 71 IKPDSAEIN---------------NNYGWFLCGRLNRPAESMAYFDKALADPT------- 108
Query: 464 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 523
Y A N + A
Sbjct: 109 ----YPTPYIA------------------------------NLNKGICSAKQGQFGLAEA 134
Query: 524 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELK 582
+ L + A+ LA L + + + L + +
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA 194
Query: 583 NDDWVKAKE 591
+ A E
Sbjct: 195 LGNAQAAYE 203
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 76 ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135
A+ + I L + Y AT A + D W+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYR-----------QATASIEDALKSDPKNELAWLVRA 49
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKRALQVH- 192
++ ++A +F+ L D+ G R ++S+ ++ +AL
Sbjct: 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPT 108
Query: 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251
P+ A L G+C K GQ G A +R+L P+ A LA + A + +
Sbjct: 109 YPTPYIA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LG 164
Query: 252 KGMEKMQRAFEIYPYCAMALNYLA 275
++ L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 21/148 (14%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV-QLKLGDFRSALTNFE 366
+ A Y +KA + ++ KP + G +L ++ F+
Sbjct: 45 WLVRAEIYQYLKVNDKAQESFRQALSI--KP-DSAEINNNYGWFLCGRLNRPAESMAYFD 101
Query: 367 KVLE--IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424
K L YP G + GQ A+ L+++ P+ A
Sbjct: 102 KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA------------ 149
Query: 425 IEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ G+ A FK
Sbjct: 150 ---FKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 26/219 (11%)
Query: 35 AEQAP--LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
AE+A ++ +A EY + Q +E+ + + D
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIED--ALKSDPKNELA-------WLVRAEI 51
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-GEVEQASSAF 151
Y YL + A + + +A I G L + ++ + F
Sbjct: 52 YQYLKVND-----------KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100
Query: 152 KIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
L A L + +G++ + + KR+L P P A + +
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF-KELARTKML 159
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
GQLG A F++ + L +A A
Sbjct: 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 32/246 (13%), Positives = 60/246 (24%), Gaps = 62/246 (25%)
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429
E L Y++ +A + A K DP++ A
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA---------------WL 46
Query: 430 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 489
I+ + A +SF+ AL
Sbjct: 47 VRAEIYQYLKVNDKAQESFRQAL------------------------------------S 70
Query: 490 NDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIA 546
+ E + N L +++ + + L Y A L +
Sbjct: 71 IKPDSAE-------INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123
Query: 547 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 606
+ L+ + +L ++P A L ++ A F+ +
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY-QSRVEVLQA 182
Query: 607 ATLSLG 612
L LG
Sbjct: 183 DDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 531 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 590
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 591 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 650
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 651 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 708
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 709 LAMKMYQNCLRKFYYNTDAQILL 731
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 46/332 (13%), Positives = 115/332 (34%), Gaps = 27/332 (8%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
++E ++ EE L Y R + ++ G+ + V + + +
Sbjct: 37 EVEQDIQQMEEDQDLLIYYSLMCFRHQLM--LDYLEPGKTYGNRPTVTELLETIETPQKK 94
Query: 158 DRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----IGLCRYKL 210
+ L + EF++ Y +++ +Y+ A + P I + Y +
Sbjct: 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154
Query: 211 GQLGKARQAFQRALQLDPENV--EALVALAVMDLQAN--EAAGIRKGMEKMQRAFEIY-- 264
Q + +AL + + ++ + N + K + ++ A E+
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 265 ----PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSK 318
+ A++L +AN + +G + + + A V+ + L+ +
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 319 GDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYP 373
G +KA + + + +K ++ +F + + + + L+ FEK ++
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ ++ E+A RK K
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 27/223 (12%), Positives = 72/223 (32%), Gaps = 25/223 (11%)
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAV---TN 299
+ + +E ++ + + + F ++ A +
Sbjct: 76 GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS 135
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV----KEINKPHEFIFPYYGLGQVQLKL 355
K+ ++ +A +Y+ + + + ++ I + +
Sbjct: 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195
Query: 356 GDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ AL + E LE+ +L + + Y + G + A E +KAAK+
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS--- 252
Query: 410 AQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
++ ++ +VL + + G+ + A Q ++ L
Sbjct: 253 -------REKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 26/224 (11%)
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
E + ME+ Q Y + ++ + +TE +
Sbjct: 36 AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95
Query: 305 SH-----SYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLG 356
+ S + + +Y +A YY + + ++ E ++ + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 357 DFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
++ + + L+IY ++L + Y +KA L A ++
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALEL---- 211
Query: 410 AQARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ I L NI + G+ + A + F+ A
Sbjct: 212 ------AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 3e-10
Identities = 46/366 (12%), Positives = 91/366 (24%), Gaps = 79/366 (21%)
Query: 43 WLIIAREYFKQGKVEQFRQILEE--GSSPEIDEYYADVRYERIAILNALGVYYTYLG--- 97
+L + Y + V + + +E + +YY+ L G+Y
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS---------LFFRGMYEFDQKEYV 118
Query: 98 -------KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ E + + A ++ A + Q ++ + QA
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQALDI 170
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GAIRLGIGL 205
++ + +L A + Y +L + AL++ L I
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ G A + FQ+A ++ E +
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREK--------------------------------VPD 258
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-----HGPTKSHSYYNLARSYHSKGD 320
L L+ GQ Q E L + + +
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y+ ++ N V F A + KVL+ E +
Sbjct: 319 IHDLLSYF----EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ----EDIL 370
Query: 381 ALGHIY 386
+Y
Sbjct: 371 KGECLY 376
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 570 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 624
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 625 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 684
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 685 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 735
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 736 THYEAEQWQDCKKSLLRAIHLA 757
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 48/424 (11%), Positives = 95/424 (22%), Gaps = 126/424 (29%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
Y + + DY + G Y V L +
Sbjct: 54 YYSLMCFRHQLMLDYLEPGKTYGNR-----------------PTVTELLETIETPQKKLT 96
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPI- 425
+L+ Y +L G + +A R+A K L +++
Sbjct: 97 GLLKYY-----SLFFRGMYEFDQKEYVEAIGYYREAEKE----------LPFVSDDIEKA 141
Query: 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 485
E + ++ + + AL ++
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQAL------------------------------DIY 171
Query: 486 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD------AY 539
+ LF +A + A L D + +
Sbjct: 172 QNHPLYSIRT------IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225
Query: 540 LRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGDLELKNDDWVKAKETFR 594
L +A + Q+++E +A KV+ + P L L K KA +
Sbjct: 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285
Query: 595 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654
L+ + + L
Sbjct: 286 EG-------------------------------------LDHITARSHKFYKELFLFL-- 306
Query: 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMY 714
++ + F + A + + A V+ + +F A Y
Sbjct: 307 -QAVYKETVDERKIHDLLSYFEKKNLHAY------IEACARSAAAVFESSCHFEQAAAFY 359
Query: 715 QNCL 718
+ L
Sbjct: 360 RKVL 363
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-18
Identities = 48/376 (12%), Positives = 105/376 (27%), Gaps = 61/376 (16%)
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
+I+ + + EE L Y R ++ L + E + S +
Sbjct: 34 LRREIKQELDQMEEDQDLHLYYSLMEFRHNL----MLEYLEPLEKMRIEEQPRLSDLLLE 89
Query: 155 LEADRDNVPALL------GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----I 203
++ + + LL + E ++ Y +++F+K+A I +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
Y + Q + ++A ++ +
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEI------------------------------YKEHEAY 179
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGD 320
+ A +F Q+ + A ++ + YN+ +S+
Sbjct: 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239
Query: 321 YEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NC 376
YE A Y+ ++ +E N Y+ + Q+ KLG A K +
Sbjct: 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD 299
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHF 436
+ L +E ++ L K + ++ +
Sbjct: 300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDF---------LESKMLYADLEDFAIDVAKYYH 350
Query: 437 EKGEFESAHQSFKDAL 452
E+ F+ A F
Sbjct: 351 ERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 55/365 (15%), Positives = 113/365 (30%), Gaps = 58/365 (15%)
Query: 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA 88
+ + + + L L+ R +E ++ E P + + ++ ++ A L
Sbjct: 42 LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIE-EQPRLSDLLLEI-DKKQARLTG 99
Query: 89 LGVYYTYL--GKIETKQREKEEHFILATQYYNKASRIDMHEP-------------STWVG 133
L YY G E QRE A +++ KA + ++
Sbjct: 100 LLEYYFNFFRGMYELDQREYLS----AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY 155
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-- 191
Q + QA +K + + A + +Y D++ +++A +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215
Query: 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
P G IGLC+ Q A F+RA+ + E+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES------------------ 257
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPTKSHS 307
I P A + + G+ + +A + G S
Sbjct: 258 -------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +S + G E+A + ++ + + + + +F+ A F K
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 368 VLEIY 372
V ++
Sbjct: 365 VEQVR 369
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 27/264 (10%)
Query: 511 LLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVN 566
L+Q+ + + Y L+ F++ ++ ++L L I+ L
Sbjct: 41 ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100
Query: 567 GKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNE 623
+Y G EL +++ A + F+ A + A + +
Sbjct: 101 LEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSESYYY 155
Query: 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683
+ + +A E+Y + L + + Q++ + F +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS--- 212
Query: 684 GSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYL 733
+ N+ +Q + A+ ++ + F + Q +
Sbjct: 213 --MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 734 ARTHYEAEQWQDCKKSLLRAIHLA 757
+ HY+ + + + + +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 1e-17
Identities = 37/216 (17%), Positives = 71/216 (32%), Gaps = 43/216 (19%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ K G+ +A ++ D +V+ + L + + R E
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI----------AYVKTGAVDRGTE 63
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ ++A P L +Y Y+
Sbjct: 64 LL-ERSLADA-----------------------------PDNVKVATVLGLTYVQVQKYD 93
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A + E N P + LG LG F A+ +F+ L + P+ + +A+
Sbjct: 94 LAVPLLIKVA-EAN-P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
Y Q+G+ E+A +KA ++D + L+ +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVELALVPR 186
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 77.1 bits (191), Expect = 2e-16
Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 21/188 (11%)
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
+ G++ L E +L +Y G ++
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGIAYVKTGAVDRG 61
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
S+ P + + LG +++ + A+ KV E P N LG
Sbjct: 62 TELLERSL-AD-AP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118
Query: 385 IYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 444
LG+ ++A + + A + P + + I + + G E A
Sbjct: 119 ALDNLGRFDEAIDSFKIALGLRPNEGKV---------------HRAIAFSYEQMGRHEEA 163
Query: 445 HQSFKDAL 452
FK A
Sbjct: 164 LPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 14/187 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
VYY G K + A + D + + G + G V++ +
Sbjct: 9 VYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ L DNV +Y ++ + + +P RLG+ L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DN 122
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
LG+ +A +F+ AL L P + A+A + +E A + ++A E+
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-----LPHFKKANELDEGA 177
Query: 268 AMALNYL 274
++ L +
Sbjct: 178 SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 8e-10
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ KG G QA + V +AD +V L G E +R+L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEA 247
P LG+ ++ + A + + +P N L V +L +
Sbjct: 71 DAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
A ++ + A + P +A + G+H
Sbjct: 129 A-----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 19/215 (8%), Positives = 50/215 (23%), Gaps = 58/215 (26%)
Query: 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 441
G + + G+ +A LL + D D ++G+ + + G
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDV---------------ALHLGIAYVKTGAV 58
Query: 442 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 501
+ + + +L + ++V++
Sbjct: 59 DRGTELLERSL------------------------------------ADAPDNVKVATVL 82
Query: 502 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 561
+ + + + + RL +I+
Sbjct: 83 GLTYVQVQKYDLAVPL-------LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 562 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
AL + + + +A F+ A
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-17
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
++ NL +++ G++ A + + KE Y LG + LG+F +A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 363 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416
++K L + ++ +LG+ Y L EKA + K I A+ L
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI------AQELK 123
Query: 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ GE ++G + G + A + L
Sbjct: 124 DRIGE---GRACWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 324
A L N + G E L + + +Y NL +Y G++E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 325 GLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDN 375
YY + +++ Y LG L D+ A+ K L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ Y LG ++A K +I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-10
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G Y LG A A ++ L + + + A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLL--------------IAKEFGDKAAE------------ 48
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKG 319
+A + L N + F G+ + + L + ++ S Y+L +Y
Sbjct: 49 -----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 320 DYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
DYEKA Y++ +E+ + LG LG+ A+ EK LEI
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 43/172 (25%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGIGLCRYKLGQLGKARQAF 220
LG + G + D++ +++ L + + +G LG+ A + +
Sbjct: 15 LGNTH--YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
++ L L R A + L N +
Sbjct: 73 KKTLLL------------------ARQLKDRAVE-------------AQSCYSLGNTYTL 101
Query: 281 TGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+ LA+ + + + ++L +Y + G++++A +
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG + LG A + + I E + G
Sbjct: 10 RAFGNLGNTHYLLGNFRD-----------AVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 138 LLAKGEVEQASS----AFKIVLEA-DRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQV 191
+ GE E AS + + DR Y +++++ + L +
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 192 ------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL 226
+G LG +A ++ L++
Sbjct: 119 AQELKDRIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 7/147 (4%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + + PH I + +G + L + A F
Sbjct: 8 SLWNEGVLAADKKDWKGA----LDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQARTLLKKAGEEVPI 425
+ + G +Y Q + + A + L++A + +L +
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Query: 426 EVLNNIGVIHFEKGEFESAHQSFKDAL 452
EVL NI ++ +K E++ A + A
Sbjct: 122 EVLYNIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 19/127 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + +A + S+ +K Y+ G + + + A
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK--HLAVAYFQRGMLYYQTEKYDLA 90
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 406 DPRDAQA 412
+
Sbjct: 151 KSEPRHS 157
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 34/256 (13%), Positives = 68/256 (26%), Gaps = 77/256 (30%)
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ + +L+ + H I IG L + +A +AF R++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
A + + EK A + AL L +
Sbjct: 68 KHLAVAYFQRGM----------LYYQTEKYDLAIKDL---KEALIQLRGNQLI------- 107
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
DY+ GL + E+ Y
Sbjct: 108 --------------------------------DYKILGLQFKLFACEV---------LYN 126
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + K +++ A + + + +I+KA E + K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 408 RDAQARTLLKKAGEEV 423
L + +V
Sbjct: 175 VVIPVGRLFRPNERQV 190
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 145
L GV + A ++ G + +
Sbjct: 9 LWNEGVLAADKKDWKG-----------ALDAFSAVQDPH---SRICFNIGCMYTILKNMT 54
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--IRLGI 203
+A AF + D+ A + + + +Y +++ K AL LG+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 204 -------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
K + KA + A + E + + A+ +
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A R + W+ L G+ A + L + A+ V
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ + R++++ ++A P PG +G GQ A A+ RA QL PE
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALW-LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
L + + + +++ A +L+
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
+ + + + + A L A E G + +R L +HP P A+
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA- 61
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+G R+ + +A Q+A PE+ + L D EAA R
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-----AAAYTR 116
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A ++ P L N ++ L+ A G + L+
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 4e-14
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 6/136 (4%)
Query: 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340
T A+ P ++ LA + GD + + P
Sbjct: 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HP-G 55
Query: 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400
LG+V+ A ++ + P++ LGH GQ E A
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 401 KAAKIDPRDAQARTLL 416
+A ++ P + L
Sbjct: 116 RAHQLLPEEPYITAQL 131
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 19/116 (16%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART- 414
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 415 ----------------LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 452
LL++A + P + +G + G+ E+A ++ A
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 43/202 (21%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+ + A++ P++ A + LA +L + G +QR ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT---AGEMAVQRGLALHPGHPEA 59
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ L + +H L + A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDA--------------------------------- 86
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
P E LG G +A + + ++ P+ L + +L
Sbjct: 87 ------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 391 QIEKAQELLRKAAKIDPRDAQA 412
L + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 23/210 (10%), Positives = 46/210 (21%), Gaps = 58/210 (27%)
Query: 390 GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFK 449
+ LR A + P+D A + G+ + + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA---------------WLMLADAELGMGDTTAGEMAVQ 47
Query: 450 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 509
L H E + L
Sbjct: 48 RGL------------------------------------ALHPGHPE-------AVARLG 64
Query: 510 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 569
R+ A+VL + ++ L L + + + A ++ +
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Query: 570 PNALSMLGDLELKNDDWVKAKETFRAASDA 599
P + L + + DW A
Sbjct: 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 30/201 (14%), Positives = 55/201 (27%), Gaps = 16/201 (7%)
Query: 691 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 750
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 751 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAAS 810
+A AP + + G A L+ + A A ++ +
Sbjct: 81 QQASDAAPEHPGIALWLGHA--------LEDAGQAEA----AAAAYTRAHQLLPEEPYIT 128
Query: 811 NLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKA 870
L+ ++ + AA A + AA Q A A +
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAI 188
Query: 871 EEQKKYLLEKRKLEDEQKRLR 891
+ L R + LR
Sbjct: 189 AASVRPLAPTRV--RSKGPLR 207
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 645 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 704
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 705 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 755
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 517 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 576
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 577 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 636
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 637 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 5e-17
Identities = 40/285 (14%), Positives = 82/285 (28%), Gaps = 41/285 (14%)
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPS 194
+ + E+E+ + VL + + AL+ + YS +A+++ P
Sbjct: 76 KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV------MDLQANEAA 248
A +G +K G + A F AL N +L L++ D +
Sbjct: 136 LVEA-WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSR 193
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ + + + A ++ + L N + +
Sbjct: 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP------------------- 234
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++A Y + K K + + + AL F +
Sbjct: 235 ----------KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413
+ P E + + L + LL K P+ Q+
Sbjct: 285 AALDPAWPEPQQREQQLLEFLS---RLTSLLESKGKTKPKKLQSM 326
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 2e-13
Identities = 48/302 (15%), Positives = 92/302 (30%), Gaps = 39/302 (12%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDAQART 414
+ L E+VL + L G +A+ LL KA K++P +A
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA-- 139
Query: 415 LLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD----------GIWLTLL-DS 463
N +G ++++KG+ SAH F AL + L L
Sbjct: 140 -------------WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD 186
Query: 464 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VTVLFNLARLLEQIHDT 518
+ S+ Q K + D W +++ FN + +
Sbjct: 187 SGDEHSRHVMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLSLYFNTGQNPKISQQA 240
Query: 519 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578
++A + K D +L A + K + ++E ++A ++ +P
Sbjct: 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ 300
Query: 579 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 638
L E+ + +L + R + + + L+
Sbjct: 301 LLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLS 359
Query: 639 EL 640
L
Sbjct: 360 TL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 49/325 (15%), Positives = 100/325 (30%), Gaps = 41/325 (12%)
Query: 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAIL 86
+ +L+ Q +D YF+ VE + ++ E+++ + E +
Sbjct: 42 EAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD-VQEEMEK--TLQQMEEVLGSA 98
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
GK + A +KA +++ W G++ KG+V
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPE---AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 147 ASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
A + F L ++ V L + + DS+ K A+Q+ +
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 199 -IRLGIGLCR------YKLGQLGKARQAFQRALQLD---PENVEALVALAVM--DLQANE 246
LG +A A+ +A ++D N + + A + ++
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
A +E +A + P L+E L+ + + G TK
Sbjct: 276 EA-----LEGFSQAAALDPAWPEPQQREQQ---------LLEFLSRLTSLLESKGKTKPK 321
Query: 307 SYYNLARSYHSKGDYEKAGLYYMAS 331
++ S Y ++
Sbjct: 322 KLQSMLGSLRPAHLGPCGDGRYQSA 346
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 1e-11
Identities = 35/271 (12%), Positives = 77/271 (28%), Gaps = 42/271 (15%)
Query: 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA-------GIRKGMEK---- 256
+ + + + LQ V+ L + + +++ MEK
Sbjct: 31 GRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQ 90
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSY 315
M+ A AL T + E L A+ + P ++ L Y
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVY 147
Query: 316 HSKGDYEKAGLYYMASVKEINKPHE------FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
KGD A + ++ K + ++ + +
Sbjct: 148 WKKGDVTSAHTCFSGAL-THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206
Query: 370 EIYPDNCETLKALGHIYVQ--------LGQIEKAQELLRKAAKIDPRDAQARTLLKKAGE 421
++ + + LG+ Y+ ++A +A K+D + +
Sbjct: 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN--------- 257
Query: 422 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
++ N +H + + A + F A
Sbjct: 258 ---PDLHLNRATLHKYEESYGEALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 525 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 583
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 584 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 642
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 643 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 694
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 695 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 731
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 615 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 671
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 672 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 726
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 727 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 761
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 6e-17
Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%)
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
P A +LN LAN G +L AL V P + ++ NLA +G ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEA 62
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
++Y +++ P F Y +G ++ D + AL + + ++I P + L
Sbjct: 63 LMHYKEAIRI--SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 385 IYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 444
I+ G I +A R A K+ P A N+ ++
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDA---------------YCNLAHCLQIVCDWTDY 164
Query: 445 HQSFKDAL 452
+ K +
Sbjct: 165 DERMKKLV 172
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 2e-14
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L I+ +Q EE A + Y KA + + +L +G++++A +K
Sbjct: 12 LNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ A +L+ Y RA+Q++P+ A + G
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-NLASIHKDSGN 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
+ +A +++ AL+L P+ +A LA E+M++ I
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHC---LQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 273 YLANHFFFT 281
+ H +
Sbjct: 184 LPSVHPHHS 192
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 2e-13
Identities = 44/254 (17%), Positives = 89/254 (35%), Gaps = 45/254 (17%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ +L A ++ +G +++ Y++AL+V P A + + G+L +A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-HSNLASVLQQQGKLQEALMH 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
++ A+++ P +A + K M+ +Q A + Y A+ +N
Sbjct: 66 YKEAIRISPTFADAYSNMGN----------TLKEMQDVQGALQCY-TRAIQIN------- 107
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
P + ++ NLA + G+ +A Y ++K KP
Sbjct: 108 ----------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP- 142
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399
+F Y L + D+ +K++ I D E L ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGF 201
Query: 400 RKAAKIDPRDAQAR 413
RKA +
Sbjct: 202 RKAIAERHGNLCLD 215
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 3e-13
Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 9/191 (4%)
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P + ++L LA + + I + + ++A E++P A A + LA+ G+
Sbjct: 4 SCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ A+ ++ PT + +Y N+ + D + A Y ++ +IN F +
Sbjct: 61 EALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QIN--PAFADAH 114
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + G+ A+ ++ L++ PD + L H + E ++K I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 406 DPRDAQARTLL 416
+ L
Sbjct: 175 VADQLEKNRLP 185
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-12
Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 11/268 (4%)
Query: 80 YER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y + + + ++ L + +Q + +E A +Y +A RI + G L
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+V+ A + ++ + A A + + G +++ Y+ AL++ P P A
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ C + + ++ + + + +E +V + +
Sbjct: 148 -YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS----HGFR 202
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A H ++ +H +L +S
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGM 262
Query: 319 GDYEK-AGLYYMASVKEINKPHEFIFPY 345
+ +K Y S + +
Sbjct: 263 HNPDKFEVFCYALSPDDGTNFRVKVMAE 290
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 4e-08
Identities = 60/454 (13%), Positives = 126/454 (27%), Gaps = 82/454 (18%)
Query: 534 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 593
+ D+ LA I + + N++ ++ L +AL+V ++ A S L
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS--------------- 51
Query: 594 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 653
L+ + + L++A Y I +
Sbjct: 52 -------------------------VLQQQGK--------LQEALMHYKEAIRISPTFAD 78
Query: 654 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 713
A + G L E + +T+ + D NLA ++ GN A+
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIAS 133
Query: 714 YQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 772
Y+ L+ D LA W D + + + + + V
Sbjct: 134 YRTALK---LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPH 190
Query: 773 KFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHL 832
L R A R + ++ + K++ ++
Sbjct: 191 HSMLYPLSHGFRKAIAER-------HGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Query: 833 LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQ 892
H + + + E Y L + + ++
Sbjct: 244 SSDFGNHPTSHLMQS--------------IPGMHNPDKFEVFCYALSPDDGTNFRVKVMA 289
Query: 893 QEEHFQRVKEQWRSSTPASKRRERSENDD-DEVGHSEKRRRKGGKRRKKDKSSRSHYETE 951
+ HF + + + A + + + + G+++ R + R +
Sbjct: 290 EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPG 349
Query: 952 YAEADMMDYR---EEPEDEDASMNYREPIGQMND 982
+ A MDY +E + + Y E + M
Sbjct: 350 TSGALFMDYIITDQETSPAEVAEQYSEKLAYMPH 383
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 5e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 563
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 564 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 623
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 624 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 678
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 426 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 485
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 486 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 545
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 546 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 604
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 605 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 658
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 52/252 (20%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRA 260
+G+ Y LG+ A F+RAL+ +P++ EAL LA L A +E +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA-----LENGKTL 65
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
P L+ A Y KG
Sbjct: 66 VARTPRYLGGYMVLSE-----------------AYV---------ALYRQAEDRERGKGY 99
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
E+A + +N P + + G V LG+ A + ++ L + D E
Sbjct: 100 LEQALSVLKDAE-RVN-P-RYAPLHLQRGLVYALLGERDKAEASLKQALAL-EDTPEIRS 155
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGE 440
AL +Y+ +G++++A KA + P+D R KG+
Sbjct: 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLR---------------VRYASALLLKGK 200
Query: 441 FESAHQSFKDAL 452
E A ++
Sbjct: 201 AEEAARAAALEH 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 29/156 (18%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
L ++ G Y+ A + ++KE P + Y L + QLKLG AL N +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--NP-QDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 368 VLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQARTLL 416
++ P L YV L G +E+A +L+ A +++PR A
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL---- 120
Query: 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
G+++ GE + A S K AL
Sbjct: 121 -----------HLQRGLVYALLGERDKAEASLKQAL 145
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 9e-13
Identities = 39/210 (18%), Positives = 71/210 (33%), Gaps = 18/210 (8%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ GRY +L ++RAL+ +P P A + + KLG + A + + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEA-LYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 233 ALVALAVMDLQANEAAGIRKGMEKM--------QRAFEIYPYCAMALNYLANHFFFTGQH 284
+ L+ + A R+ + + A + P A + G+
Sbjct: 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGER 134
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
E + ALA+ + LA Y S G ++A Y ++ E + +
Sbjct: 135 DKAEASLKQALALEDT----PEIRSALAELYLSMGRLDEALAQYAKAL-EQA--PKDLDL 187
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
L G A LE +
Sbjct: 188 RVRYASALLLKGKAEEAARAAA--LEHHHH 215
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 39/290 (13%), Positives = 73/290 (25%), Gaps = 88/290 (30%)
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
+ G L A G + A + F+ L+ + + AL A + G + +LE K
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 188 ALQVHPSCPGA----------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+ P G + G L +A + A +++P +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
+ + + + +A + ALA+
Sbjct: 125 GL----------VYALLGERDKAEASL---------------------------KQALAL 147
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+ LA Y S G ++
Sbjct: 148 EDT----PEIRSALAELYLSMGRLDE---------------------------------- 169
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
AL + K LE P + + + G+ E+A
Sbjct: 170 ---ALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 40/256 (15%), Positives = 64/256 (25%), Gaps = 56/256 (21%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG LG + +ALT FE+ L+ P + E L L ++LG + A E +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 405 IDPRDAQAR----TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 460
PR KG E A KDA
Sbjct: 68 RTPRYLGGYMVLSEAYVALY--------RQAEDRERGKGYLEQALSVLKDAE-------- 111
Query: 461 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 520
+ + L + V L +
Sbjct: 112 ----------------------------RVNPRYAPLHLQRGLVYALLGERDKAEAS--- 140
Query: 521 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 580
+ L +D + LA + + L ++ +AL+ K +
Sbjct: 141 ----LKQAL-ALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195
Query: 581 LKNDDWVKAKETFRAA 596
L +A
Sbjct: 196 LLKGKAEEAARAAALE 211
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
L Y L + + + + A A R++ + +G + GE ++
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ K L + D A + + GR ++L Y +AL+ P R+
Sbjct: 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL-RVRYASA 194
Query: 207 RYKLGQLGKARQAFQRALQLDP 228
G+ +A +A
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 31/211 (14%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LGV LG+ + A + +A + + +P + L G V
Sbjct: 9 LRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 147 ASSAFKIVLEADRDNVPAL--LGQA---------CVEFNRGRYSDSLEFYKRALQVHPSC 195
A K ++ + L +A E +G +L K A +V+P
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKG 253
L GL LG+ KA + ++AL L+ E ALA + + + A
Sbjct: 118 APL-HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA----- 170
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ + +A E P A+ G+
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKA 201
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 533 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 592
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 593 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 652
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 653 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 712
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 713 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 75.5 bits (187), Expect = 2e-16
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 18/145 (12%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+YNL +Y+ +GDY++A YY ++ E+ P +Y LG K GD+ A+ ++K
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427
LE+ P + E LG+ Y + G ++A E +KA ++DPR A+A
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA--------------- 105
Query: 428 LNNIGVIHFEKGEFESAHQSFKDAL 452
N+G ++++G+++ A + ++ AL
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 60.9 bits (149), Expect = 3e-11
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRS 360
P + ++YNL +Y+ +GDY++A YY K + P +Y LG K GD+
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDP-RSAEAWYNLGNAYYKQGDYDE 87
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ ++K LE+ P + E LG+ Y + G ++A E +KA ++DP
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 2e-09
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LG Y G + A +YY KA +D W G +G+ ++
Sbjct: 5 YNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ LE D + A + +G Y +++E+Y++AL++ P A +G
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNA 112
Query: 207 RYKLGQLGKARQAFQRALQLDPEN 230
YK G +A + +Q+AL+LDP +
Sbjct: 113 YYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 5e-08
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G YK G +A + +Q+AL+LDP + EA L A E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----------AYYKQGDYDEAIE 56
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
Y + AL + P + ++YNL +Y+ +GDY+
Sbjct: 57 YY---------------------------QKALELD---PRSAEAWYNLGNAYYKQGDYD 86
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+A YY ++ E+ P +Y LG K GD+ A+ ++K LE+ P +
Sbjct: 87 EAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 6e-16
Identities = 23/188 (12%), Positives = 55/188 (29%), Gaps = 24/188 (12%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 324
+ A L + F + + + + + + + G+++ A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 325 GLYYMAS---VKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PD 374
++ + + P Y + V L GD A +EK L
Sbjct: 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPI-EVLNNIGV 433
+ LG + Q + +AQ+ +AR + + + + E++ +
Sbjct: 146 IACAFRGLGDLAQQEKNLLEAQQHWL----------RARDIFAELEDSEAVNELMTRLNG 195
Query: 434 IHFEKGEF 441
+
Sbjct: 196 LEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-15
Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 19/161 (11%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
T S + + L Y +++A + A ++ + +G V+ G++
Sbjct: 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 359 RSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+A F + E+ + + + G + A++ K+
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY------ 136
Query: 412 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
A+ + +G + ++ A Q + A
Sbjct: 137 AQQADDQVAI---ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG Y ++ + + A + + E G +
Sbjct: 27 GARFMLGYVYAFMDRFDE-----------ARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 138 LLAKGEVEQASSAFKIVLEADR---DNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G + A F E ++ A V + G + + + Y+++L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 191 VH-----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
G+G + L +A+Q + RA +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 60/316 (18%), Positives = 101/316 (31%), Gaps = 86/316 (27%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++GRY ++ K+AL+ HP A L + L + A AL
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY----PYCAMALNYLANHFFF 280
IR+ + P A LN LA +
Sbjct: 97 A------------------------IRE---------KTLGKDHPAVAATLNNLAVLYGK 123
Query: 281 TGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
G++ E L + AL + +H P + NLA ++G YE+ YY ++ E
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-E 181
Query: 335 INK-------PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---------PDNCET 378
I + P+ L LK G F+ A T ++++L +N
Sbjct: 182 IYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP--IEVLNNIGVIHF 436
G+ + K + P L N+G ++
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWY-----------KACKVDSPTVTTTLKNLGALYR 289
Query: 437 EKGEFESAHQSFKDAL 452
+G+FE+A + A+
Sbjct: 290 RQGKFEAAETLEEAAM 305
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 53/289 (18%), Positives = 85/289 (29%), Gaps = 65/289 (22%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ------------ACVEFNRGRYSDSL 182
++G E A K LE G A V ++ +Y D+
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLE----KTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 183 EFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQ-----LDP 228
AL + HP+ A L + + K G+ +A +RAL+ L
Sbjct: 90 NLLNDALAIREKTLGKDHPAV--AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147
Query: 229 ENVEALV-----ALAVMDL-QANEAAGIRKGMEKM-QRAFEIY--------PYCAMALNY 273
++ + AL + + E E QRA EIY P A N
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEV-------EYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 274 LANHFFFTGQHFLVEQLTETALAV-------TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
LA+ + G+ E L + L + K + + KG +
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP-IWMHAEEREECKGKQKDGTS 259
Query: 327 YYMASVKE--INKPH-EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ LG + + G F +A T E +
Sbjct: 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-15
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ G G+ + A F+ + D + LG + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y +L+ Y + + P C +LG L A F A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 237 LA 238
A
Sbjct: 126 AA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 9e-15
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 3/119 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y L + + G ++ A + A ++ + + GLG + LG + A
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARY-FLGLGACRQSLGLYEQA 71
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAG 420
L ++ + + ++QLG ++ A+ A + L +AG
Sbjct: 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
++ D + L ++ G++ D+ + ++ + LG+G CR
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQS 64
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV 239
LG +A Q++ +D A
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAE 94
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-10
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
+ + L L + + G+ +++ + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQ 63
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G YE+A Y ++ + + L+LGD A + F +
Sbjct: 64 SLGLYEQALQSYSYGA-LMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 377 ETLKALGHIYVQLGQIEKAQE 397
L + ++
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA------------- 410
+ + D E L ALG Q G+ + AQ++ + +D DA
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 411 ----QARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 452
QA + H + G+ + A F A
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 129
+ E + Y ALG GK + A + + +D ++
Sbjct: 12 GLSEDTLEQLY-------ALGFNQYQAGKWDD-----------AQKIFQALCMLDHYDAR 53
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
++G G + G EQA ++ D + A G + + A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 190 QVHPSCP 196
+ + P
Sbjct: 114 ALAAAQP 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 711 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 633 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 692
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 693 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 740
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 748
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 749 SLLRAIHLAPSNYTLRFDAGVAMQK 773
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 564
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 565 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 624
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
I + + I KG +E+A F+ + D N
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
V ++G A + + ++ + + Y A + + + G C+ +L KA++ F+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECFE 128
Query: 222 RALQLDPENVEALVALAVMDL 242
+Q + + A + +D
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
Y+ A +++KG E+A +++ + + GL + F+ A +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDY-IMGLAAIYQIKEQFQQAADLYAV 95
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA---QARTLLK 417
+ ++ + G ++L KA+E + + +A++ L
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLD 148
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 7e-12
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 15/108 (13%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ D + + G A + F+ +
Sbjct: 99 LGKNDYTP---------------VFHTGQCQLRLKAPLKAKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV----TNHGPTKSHSYYNLA 312
++ I + A F+ G+ E A + LA
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRI-------EEAEVFFRFLCIYDFYNVDYIMGLA 77
Query: 313 RSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
Y K +++A LY +A N P + GQ QL+L A FE V++
Sbjct: 78 AIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 372 YPDNCETLKA 381
D +KA
Sbjct: 134 SNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 651 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 710
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 711 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 748
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 749 SLLRAIHLAPSNYTLRFDAGVA 770
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 56/278 (20%), Positives = 90/278 (32%), Gaps = 55/278 (19%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++ K+AL+ HP A L + L + +A AL
Sbjct: 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 225 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 265
+ P L LAV + A E + +RA EI P
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKFHP 124
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 319
A LN LA G+ VE AL + + P + + NLA Y +G
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-PNVAKTKNNLASCYLKQG 183
Query: 320 DYEKAGLYYMASVKEINK-----PHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEI-- 371
Y+ A Y + ++ + P + + + R + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 372 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
P TL++LG +Y + G++E A L A++
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 26/162 (16%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFP-YYGLGQVQLKLGDFRS 360
S ++ A ++ E + H + L V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61
Query: 361 ALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A L I P TL L +Y + G+ ++A+ L ++A +I
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR------ 115
Query: 413 RTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 452
K G+ P + LNN+ ++ +G+ E ++ AL
Sbjct: 116 ---EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ S + +A L + A ++ + E + LG Q + A+
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA---WRSLGLTQAENEKDGLAIIALN 75
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ P + AL + A LR P+ Q
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 3e-12
Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 394 KAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
A L A +DP+D + V H + +A S + L
Sbjct: 69 LAIIALNHARMLDPKDIAV---------------HAALAVSHTNEHNANAALASLRAWL 112
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 8e-11
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
+ + +++ ++ Q P A +GL + + + G A A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIAL 74
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
A LDP+++ ALAV + A + ++ P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNAN---AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ +G +L + +A+ AF+ V + + + A + + ++ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P + + A + + L P+
Sbjct: 80 LDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 11/81 (13%), Positives = 20/81 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + + + W G + A A D ++ A
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 173 FNRGRYSDSLEFYKRALQVHP 193
N + +L + L P
Sbjct: 96 TNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
GL KL L +A AF+ Q +PE EA +L + + + + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARM 79
Query: 263 IYPYCAMALNYLANHFFFTGQH 284
+ P LA
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNA 101
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 694 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 753
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 754 IHLAPSNYTLRFDAGVA 770
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 718
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 719 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 758
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 498 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 557
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 558 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 596
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 2e-13
Identities = 31/280 (11%), Positives = 78/280 (27%), Gaps = 28/280 (10%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
F G Y + +R P + + + G + + ++
Sbjct: 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQ 66
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
A+ A + I +++ + + L A+ +F+ +
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQNP-------D 118
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
AL + G + + + A + +++ ++ +
Sbjct: 119 AALRTLHQGDSLEC-MAMTVQILLKLDRLDLA-RKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F+++ + L ++ G+ E A+ +L++A D
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP-- 234
Query: 413 RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
E L N+ V+ G+ + L
Sbjct: 235 -------------ETLINLVVLSQHLGKPPEVTNRYLSQL 261
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 14/244 (5%)
Query: 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD 77
A + + +I + L + A + + L+ S +D
Sbjct: 43 AYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 78 VRYERIAILNALGVYYTYLGKIETKQR-----------EKEEHFILATQYYNKASRIDMH 126
+I L + K + LA + K D
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 127 EPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184
T + + LA G +++ A F+ + + + L GQA +GR+ +
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244
+ AL P + + L ++ + + + + +
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PFIKEYRAKENDF 281
Query: 245 NEAA 248
+
Sbjct: 282 DRLV 285
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 66.6 bits (164), Expect = 3e-13
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
E +KA ++DP +A+A N+G ++++G+++ A + ++ AL
Sbjct: 64 EYYQKALELDPNNAEA---------------WYNLGNAYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 64.3 bits (158), Expect = 2e-12
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIE 426
K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-------------- 113
Query: 427 VLNNIGVIHFEKG 439
N+G ++G
Sbjct: 114 -KQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-07
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 72 LDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 6e-13
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ I G E A F+ + D + LG
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
G+Y ++ Y + P C + G+L +A A +L
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP-FHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 230 NVEALVALA 238
E
Sbjct: 122 XPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 5e-12
Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 3/119 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y+LA + + G YE A + A ++ H + GLG + +G + A
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLD--HYDSRFFLGLGACRQAMGQYDLA 74
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAG 420
+ ++ + +Q G++ +A+ L A ++ + L +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + ++ E D + L A ++ G Y D+ ++ + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-L 59
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
G+G CR +GQ A ++ +D A LQ E + + + A
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116
Query: 262 EIYP 265
E+
Sbjct: 117 ELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 43/188 (22%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G LG ++ + +E L +LA Q + A ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----------SGXYEDAHXVF-QALCV 49
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
L+ S + L + G Y+ A Y
Sbjct: 50 LD-----------------------------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
++ + + L+ G+ A + E+ + E + + L
Sbjct: 81 GA-VMDIXEPR--FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Query: 391 QIEKAQEL 398
I+ +E+
Sbjct: 138 AIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 5e-09
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 15/97 (15%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTL 415
G S + EI D E L +L Q G E A + + +D D++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--- 57
Query: 416 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+G G+++ A S+
Sbjct: 58 ------------FLGLGACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 634 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 693
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 694 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 753
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 754 IHLAPS 759
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + L+ +A ++ G E F+ + +D Y + A
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACR 65
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A+G Y LA Y+ + +D+ EP + LL GE+ +
Sbjct: 66 QAMGQYD------------------LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE 107
Query: 147 ASSAFKIVLEADRD 160
A S + E +
Sbjct: 108 AESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 748
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 749 SLLRAIHLAPSNYTLRFDAGVA 770
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-12
Identities = 20/73 (27%), Positives = 34/73 (46%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 403 AKIDPRDAQARTL 415
++ + + L
Sbjct: 68 IEVAREEGTQKDL 80
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-09
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + Y LA+ + + +A + V+ P +++ YY LG++ +L A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDA 60
Query: 362 LTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQ 396
+ + + +E+ + + L L ++ +E
Sbjct: 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432
P++ T AL +++ +A L + + DP ++G
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT---------------YYHLG 48
Query: 433 VIHFEKGEFESAHQSFKDAL 452
++ + A ++ +
Sbjct: 49 KLYERLDRTDDAIDTYAQGI 68
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
++ A S +L ++ ++ P G +G +L + A
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDT 63
Query: 220 FQRALQLDPENVEA 233
+ + +++ E
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 2e-11
Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ E+ E+ T ++ Y G Y +A + Y V +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 339 HEF------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---G 383
+ + + L LKL ++ A+ +K L + N K L G
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRG 358
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
+ + + E A+ K +++P++ AR +
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 7e-07
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K ++ A Y K E + +AS +F + A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYG----------LSEKESKASESFLL---------AAF 320
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y+ ++E +AL + + + R G + + + A+ F++ L
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG--EAQLLMNEFESAKGDFEKVL 378
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGM-EKM 257
+++P+N A + +++ +A E + + M
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ ++E A +Y ++ E+N P ++ + KLG++ A
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELN-PANAVY-FCNRAAAYSKLGNYAGA 65
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ + E+ + I P + +G L + +A +KA ++DP + ++ LK A
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + N A +Y G+Y A ++ I+ + Y +G L A
Sbjct: 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP--AYSKAYGRMGLALSSLNKHVEA 99
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ ++K LE+ PDN L ++L +
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
S D E +G + E A + +E + N +A G Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+ +++ +RA+ + P+ A R+G L L + +A +++AL+LDP+N L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMG--LALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 238 AVMDLQANEA 247
+ +L+ EA
Sbjct: 121 KIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K E+F A +Y KA ++ + + G A + + D A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ ++ +++ +YK+AL++ P + + + KL +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETY-KSNLKIAELKLRE 129
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 3e-11
Identities = 106/736 (14%), Positives = 207/736 (28%), Gaps = 262/736 (35%)
Query: 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA 84
D D+ D+ K+ I+++ E+ I+
Sbjct: 34 DCKDVQDMPKS---------ILSK--------EEIDHIIMSKD-----------AVSGTL 65
Query: 85 ILNALGVYYTYLGKIETKQREKEEHFI---LATQYYNKASRI--DMHEPSTWVGKGQLLL 139
L + +KQ E + F+ L Y S I + +PS ++
Sbjct: 66 RL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MM 108
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +EQ + + NV R + L ++AL +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVS-----------RLQPYLKL---RQALL-------EL 147
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
R + + GK + + ++ M+
Sbjct: 148 RPAKNVLIDGVLGSGKT----------------WVALDVCLSY------KVQCKMD---- 181
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
F+I+ +L E + E + Y + ++ S+
Sbjct: 182 -FKIF--------WLN-----LKNCNSPETVLEMLQKL----------LYQIDPNWTSRS 217
Query: 320 DYEKAGLYYMASVKE------INKPHE---FIFPYYGLGQVQ----LKLGDFRS---ALT 363
D+ + S++ +KP+E + L VQ + T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFNLSCKILLTT 272
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423
F++V + T +L H + L ++ + LL K P +++
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRP-------------QDL 318
Query: 424 PIEVLNN----IGVIHFEKGEFESAHQSFKDALGDGI-----WLTLLDSKTKTYVIDASA 474
P EVL + +I E + DG+ W + K T +I++S
Sbjct: 319 PREVLTTNPRRLSII----AES----------IRDGLATWDNWKHVNCDKLTT-IIESSL 363
Query: 475 SMLQFKDMQ-LFHR---FENDGNHVELP-------WNKVTVLFNLARLLEQIHDTVAASV 523
++L+ + + +F R F +P W V + V
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVIK--------SDVMVVVNKLH 412
Query: 524 LYRLIL-----FKYQDYVDAYLRLAAIAKARNNLQLSIELVN-----EALKVNGKYPNAL 573
Y L+ YL L K N L +V+ + + P L
Sbjct: 413 KYSLVEKQPKESTISIP-SIYLELK--VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 574 SM---------LGDLELK-----------NDDWVKAKETFRAASDATDGKDSYATLSLGN 613
L ++E + +++ K R S A + S
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSIL------ 521
Query: 614 WNYFAALRNEKRAPKLEATHLEKAKELYTRVI-------VQHTSNLYAANGAGVV---LA 663
N L+ K ++ Y R++ + NL + ++ L
Sbjct: 522 -NTLQQLKFYKP-------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 664 EKGQFDVSKDLFTQVQ 679
+ + + ++ QVQ
Sbjct: 574 AEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 7e-06
Identities = 86/601 (14%), Positives = 156/601 (25%), Gaps = 203/601 (33%)
Query: 525 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 568
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 569 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 625
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 626 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 682
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 683 SGSVFVQMPDVWINLAHV--------------YFAQGNFA-------------------- 708
+F W+NL + Y N+
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 709 ---LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQ----DCKKSLLRAIHLAPSNY 761
L K Y+NCL ++L A+ W C K LL
Sbjct: 235 RRLLKSKPYENCL----------LVL---LNVQNAKAWNAFNLSC-KILL---------- 270
Query: 762 TLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKK 821
T R V S T + D T+ E + L D +
Sbjct: 271 TTR-FKQVT---DFLSAATTTHISLDHHSMTLTPDE-VKSLL-----LKYLDCRPQDLPR 320
Query: 822 INTHVEYCKHL-----LDAAKIHREAA--EREEQQNRQRQEAARQAALAEEARRKAEEQK 874
E + A I A + + N + +++L AE +K
Sbjct: 321 -----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRK 373
Query: 875 KY---------------LLEKRKLEDEQKRLRQQEEHFQR---VKEQWRSST---PASKR 913
+ LL + + + + V++Q + ST P+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 914 RERSENDDDEVGHS---EKRRRKGGKRRKKDKSSRS--------------H-YETEYAEA 955
+ + +++ H + + D H E+ E
Sbjct: 434 ELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
Query: 956 DMM------DYR---------EEPEDEDASM--------NYREPIGQMNDQDDDVEENAN 992
+ D+R + S+ Y+ I D D E N
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVN 546
Query: 993 D 993
Sbjct: 547 A 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-04
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 82/301 (27%)
Query: 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAR--------EYFKQGKVEQFRQILEEG 66
+ LPR+ P L +I + +K ++ I+E
Sbjct: 311 LDCRPQDLPREVLTT--------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 67 SSPEI---DEYYADVRYERIAILNA--------LGVYYTYLGKIETKQREKEEHFILATQ 115
SS + EY ++R+++ L + + + K + + H +
Sbjct: 361 SSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---------------D 160
K S I + L K ++E + + +++ D
Sbjct: 419 KQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 161 N----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
+ F R + D F ++ ++ H S I L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLD-FRFLEQKIR-HDSTAWNASGSI---LNTL 524
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMD-LQANEAAGIR-KGMEKMQRAF-----EI 263
QL + DP+ E LV A++D L E I K + ++ A I
Sbjct: 525 QQLKFYKPYICDN---DPKY-ERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 264 Y 264
+
Sbjct: 580 F 580
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G +A YY ++ + + Y GLG LG++R A ++ +P++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ LG+ E+ ELL K D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-08
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 355 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ- 61
Query: 412 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 454
+ ++ + G +E + + +
Sbjct: 62 --------------ALRVFYAMVLYNLGRYEQGVELLLKIIAE 90
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G + ++ +Y++A+ LG+G LG+ KA ++ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 234 LVALAV 239
V A+
Sbjct: 64 RVFYAM 69
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 113 ATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
A YY KA + ++G G GE +A + ++ ++ + A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPG 197
V +N GRY +E + +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP--------------YYGLGQVQLKLGDFRS 360
+ E+A Y ++ + F + + +KL +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 361 ALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417
A+ + VL N KAL G +LGQ++ A++ RKA K P D R L+
Sbjct: 249 AIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305
Query: 418 KA 419
Sbjct: 306 AL 307
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
K++ KEE A Q Y A ++G + G+ + + A K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKNPC-- 232
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKA 216
L A RY +++ L P A+ R G + +LGQ+ A
Sbjct: 233 -------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG--KAKAELGQMDSA 283
Query: 217 RQAFQRALQLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
R F++A + P++ L + + + ++ + +
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 52/314 (16%), Positives = 90/314 (28%), Gaps = 31/314 (9%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 188
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 189 LQVHPSCPGAIRLGIGLCR-----YKLGQLGKARQAFQRALQL--------DPENVEALV 235
Q+ L + + G L A + ++A QL P + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIY--PYCAMALNYLANHFFFTGQHFLVEQLTET 293
A + Y L L G
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 294 ALAVTNHGPTKSHSYYN----LARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGL 348
+ +G S N + GD A + + K + F+ + +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259
Query: 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319
Query: 403 AKIDPRDAQARTLL 416
K+ R +
Sbjct: 320 LKLANRTGFISHFV 333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 542 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 596
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 597 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 656
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 716
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 717 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 755
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-10
Identities = 34/250 (13%), Positives = 73/250 (29%), Gaps = 48/250 (19%)
Query: 176 GRYSDSLEFYKRA--------LQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQ 225
+ S++ E +A ++ P A + QL +A+ A+ + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
N A +A + K +++M A + +
Sbjct: 65 AHANNRSLFHAAKAF----EQAGMMLKDLQRMPEAVQYIEKAS----------------- 103
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFI 342
+ V N P + + A D KA Y A + + +
Sbjct: 104 --------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
++ ++ F A + +K +Y P + A + + AQ
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 397 ELLRKAAKID 406
+ +R++ I
Sbjct: 216 KCVRESYSIP 225
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 9e-09
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 19/171 (11%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
Y A ++ + E+A Y+ + G + L A+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 365 FEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
EK +Y +N L G + + + KA L ++AA + + + R
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENEERLRQA--- 154
Query: 419 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 469
E++ + + +F+ A S + + + K +
Sbjct: 155 ------AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 43/300 (14%), Positives = 88/300 (29%), Gaps = 50/300 (16%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF-NRGRYSDSLEFYKRALQVH 192
+ +AK E +S K + D D+ + +A V F N + + + Y + + H
Sbjct: 9 EAHEHIAKAEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 193 PSCPGAIRLG-----IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-- 245
+ G+ L ++ +A Q ++A + EN A +D
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305
E + K + Q+A ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFEN-------------------------------EERLRQAA 155
Query: 306 HSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+R + +++A + KE+ VQL D+ +A
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 363 TNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
+ I ++C L+ L Y E+ + ++ + D L
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVC-RSPLVTYMDNDYAKLAIS 273
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 531 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 584
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 645 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 697
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 698 AHVYFAQGNFALAMKMYQNCL 718
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEF-----------IFPYYG-LGQVQLKLGDFRSAL 362
Y +G Y++A L Y V + F + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 363 TNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ K LE+ +N K L G ++ + E A+ +K ++ P + A+T L
Sbjct: 217 ESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KE + A Y K +E S E Q + A ++
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFS----------NEEAQKAQALRLAS---------H 199
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A +S ++E +AL++ + + R G + AR FQ+ L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG--EAHLAVNDFELARADFQKVL 257
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
QL P N A LA + A +K M
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y +L YK+ + A L + +C KL A +
Sbjct: 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217
Query: 219 AFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+ +AL+LD N + L A + + E A Q+ ++YP A LA
Sbjct: 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELA-----RADFQKVLQLYPNNKAAKTQLAV 272
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-10
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 405 IDPR--DAQA----RTLLKKAGEEVPIE 426
D Q + L++ E +E
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALE 109
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-08
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAG 420
E +L DN LG Y + Q + A LR A DP + A
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAW------- 56
Query: 421 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+G +G+ A Q+++ L
Sbjct: 57 --------KWLGKTLQGQGDRAGARQAWESGL 80
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
++ + + +L DN+ ++ +L + AL P+ A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWL 59
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G G ARQA++ L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQAC 170
T+ G+ + + A + L+ D A LG+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 171 VEFNRGRYSDSLEFYKRALQVHPS 194
+G + + + ++ L S
Sbjct: 64 QG--QGDRAGARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
E + L R +G + Q A + AL DP A L
Sbjct: 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 8e-10
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP-------------YYGLGQVQLKLGDFRSA 361
+ K + +A + Y ++ E+ L K D+ A
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107
Query: 362 LTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
+ + KVL+I +N +KAL G + G +E+A+E L KAA ++P + R +
Sbjct: 108 IDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164
Query: 419 AGEEV 423
++
Sbjct: 165 CVNKL 169
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKAR 217
F + ++++ YK AL + L + C K KA
Sbjct: 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108
Query: 218 QAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ L++D NV+AL +A M E A E + +A + P N
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEA-----KENLYKAASLNPNNLDIRNSYE 163
Query: 276 N 276
Sbjct: 164 L 164
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K+ A Y +A +H + +I
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNIEISC---------N 91
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y +++ + L++ + A+ +LG + G L +A++ +A
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG--VANMYFGFLEEAKENLYKAA 149
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
L+P N++ + ++ + M
Sbjct: 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 9e-10
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKG 439
E +KA ++DP +A+A N+G ++G
Sbjct: 64 EYYQKALELDPNNAEA---------------KQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G Y +++E+Y++AL++ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 5e-05
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 15/80 (18%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432
++ E LG+ Y + G ++A E +KA ++DP +A+A N+G
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA---------------WYNLG 50
Query: 433 VIHFEKGEFESAHQSFKDAL 452
++++G+++ A + ++ AL
Sbjct: 51 NAYYKQGDYDEAIEYYQKAL 70
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 2e-09
Identities = 20/131 (15%), Positives = 38/131 (29%)
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E + P S + L Y + DY + L Y +++ + E
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ Q +K L + + L L +A EL +K ++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 407 PRDAQARTLLK 417
L++
Sbjct: 146 SPRINRTQLVE 156
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q R + W G+ L + + + A++ L+ +N A V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 173 F---NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ ++ + + +AL + + A + + + +A + +Q+ + L+
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITA-LMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Query: 230 NVEALVALAVMDL 242
+ + +++
Sbjct: 148 RINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 2e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197
++ E A + + A+ N + YS+SL Y++ALQ+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA- 78
Query: 198 AIRLGIGLCRYKLGQ---LGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + Y + R +AL LD + AL+ LA
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215
+A R ++ L+ + ++ +P L +G
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWAL-LGEYYLWQNDYSN 62
Query: 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ A+++ALQL EN E ALA + + + +A + AL LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 276 NHFFFTGQH 284
+ F +
Sbjct: 123 SDAFMQANY 131
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 22/123 (17%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-- 409
+ + L + + P N E LG Y+ + R+A ++ +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 410 ------------------AQARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 449
AQ R ++ KA I L + F + + A + ++
Sbjct: 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139
Query: 450 DAL 452
+
Sbjct: 140 KVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQAS 148
+ LG+ Q + + Y +A ++ + +L + Q
Sbjct: 46 QWALLGEYYLWQNDYSN----SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L D + + AL+ A F + Y+ ++E +++ + ++
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 2e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
YY + G+Y ++ + ++ +++ P E + G+ L + A+ +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-P-EESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 368 VLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V+ + D N + A + E E+ AK++
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 1e-08
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 17/110 (15%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 405 I--DPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ D + E + +
Sbjct: 69 VIEDEYNKDV---------------WAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182
+ P + +G L G ++ F+ ++ D + L + +N RY +++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 183 EFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+ Y + V + + + + +L+ +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P +S + ++ ++ YE+A Y + + + + +
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 362 LTNFEKVLEIYPDN 375
E ++ +
Sbjct: 96 AEIAEARAKLEHHH 109
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-09
Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+N + + +L + + + D+EKA ++Y ++ E++ P F Y V +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELD-PSNITF-YNNKAAVYFEEKK 57
Query: 358 FRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
F + EK +E+ + K G+ + + + A + ++ D
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DP 116
Query: 411 QARTLLKKA 419
+ +K+
Sbjct: 117 ELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-07
Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG K DF A +++K +E+ P N +Y + + + + KA +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ L+ KA ++ G ++ + A Q F +L
Sbjct: 71 VGRETRADYKLIAKA--------MSRAGNAFQKQNDLSLAVQWFHRSL 110
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G + + E+A + +E D N+ +A V F ++++ ++F ++A++V
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
+L G K L A Q F R+L +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP---------------YYGLGQVQLKLGDFR 359
+ DY++A Y ++ ++ P Y + Q L +GD
Sbjct: 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH 80
Query: 360 SALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416
A +VL+ N KAL + ++++A+E L+ + P A
Sbjct: 81 EAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137
Query: 417 KKAGEE 422
K E
Sbjct: 138 MKIVTE 143
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 4e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A Y A L + + +E DR N+P
Sbjct: 23 VQKDYKEAIDAYRDA----------------LTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
+ N G ++ E L+ + A+ R R +L +A + + L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA--KARIAAWKLDEAEEDLKLLL 124
Query: 225 QLDPENVEALVAL--AVMDLQANEAAGIRKGMEKM 257
+ P + V + +A + A R KM
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 12/236 (5%)
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ L + R KL + + N A+ + L +
Sbjct: 115 KTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLS--K 172
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
A + +I P+ L A+ + G + + +E + P
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF 232
Query: 305 SHSYYNLARSYHSKGDYE-------KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+++ A + A + ++ + + + Y L G
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAR 413
+ +++ + LG +Y G +A + A + P
Sbjct: 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 1e-06
Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 15/155 (9%)
Query: 185 YKRALQVHPSCPGA----IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+ ++ P + L L +A + +Q PE A A++
Sbjct: 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 241 DL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNY--LANHFFFTGQHFLVEQLTET 293
D+ + + ++ + +++ Y A G+ Q T
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302
Query: 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+ + +Y L + Y KG +A Y
Sbjct: 303 GIDL----EMSWLNYVLLGKVYEMKGMNREAADAY 333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 12/156 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL--------LAKG 142
+ + + ++ A++ + + K + L +
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 143 EVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
++ ++ ++ N +++ +A +G+ +S + + + S +
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
LG G +A A+ A L P
Sbjct: 316 LGKVY--EMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + N KGDY +A +Y ++ + N P + Y KL +F+ A
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRN-PKDAKL-YSNRAACYTKLLEFQLA 69
Query: 362 LTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
L + E+ +++ P +K + KA ++ +KA +D +A ++
Sbjct: 70 LKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 419 A 419
Sbjct: 127 C 127
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 4e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174
+++ S ++ KG KG+ QA + ++ + + +A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 175 RGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +L+ + +Q+ P+ R + KA +Q+AL LD EA
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKA--AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 234 LVAL 237
Sbjct: 121 ADGY 124
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEK 367
YN+A G Y+ A +++ ++ + Y LG+ +F+ A F
Sbjct: 6 YNVAFDALKNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64
Query: 368 VLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQART 414
++ YP + L LG G+ +AQ+ L++ A P AR
Sbjct: 65 LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--------YYGLGQVQLKLGDF 358
+ Y L SY++ +++ A + V +P LG Q G
Sbjct: 41 ALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 359 RSALTNFEKVLEIYPDNCETLKA 381
A ++V YP + A
Sbjct: 93 TEAQQTLQQVATQYPGSDAARVA 115
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
GDY A Y ++ P + + LKL D+ A T K +E +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418
+KAL +LG++++A L++ ++P++ + L+
Sbjct: 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F G Y +L Y +AL + + + C KL KA +A++ D +
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 231 VEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
V+AL + QA E G + + + +QR + P + L N
Sbjct: 99 VKALYRRS----QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 37/324 (11%)
Query: 727 AQILLYLARTHYEAEQWQDCKKSLLRAI--HLAPSNYTL--RFDAGVAMQKFSASTLQKT 782
I +L R Y + + ++ R + H A T R A + +QKF +
Sbjct: 776 KTIRGWLMRKKYM--RMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQ--RMYVV 831
Query: 783 RRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREA 842
R+ +R L+ +R + N + E K ++ + L HR
Sbjct: 832 RKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 843 AEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 899
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + ++
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEYKS 946
Query: 900 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMD 959
+ E+ + +++ +R R + K + + E A+
Sbjct: 947 LLEKMN------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR--- 997
Query: 960 YREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRR 1019
+E + + E + + + + ++ E + RR
Sbjct: 998 -KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE-----------LNRR 1045
Query: 1020 RALSESDDDEPFERQLRDNTDELQ 1043
+ E E++L + T +L+
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLE 1069
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 835 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 885
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 886 EQKRLRQQEEHFQR 899
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 836 AKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEE 895
A+ R E E + + ++ R L ++ +E ++ + +K +E ++Q E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWN--QRQSE 129
Query: 896 HFQRVKEQWRSSTPASKRRERSENDDD 922
++ K R + + + D D
Sbjct: 130 QVEKNKINNR----IADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 5e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 848 QQNRQRQEAARQAALAEEARRK-AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 906
Q +R QE E+ RK EEQ+K RL++ + + ++++WR
Sbjct: 76 QADRLTQEP--------ESIRKWREEQRK-------------RLQELDAASKVMEQEWRE 114
Query: 907 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 951
+ + + ++ SE+ + R DK+ + +
Sbjct: 115 -------KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-07
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
KGDY A +Y +VK P I Y KL +F+ AL + + + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+K V + + KAQ A ++DP + +AR ++
Sbjct: 81 -IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
+ + I+ KG KG+ A + ++ D +N +A +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+L+ +++ IR C + + KA++A++ ALQ+DP N EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKA--ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-07
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G+ + A Y ++K PH + Y K GD++ A + K +++ PD
Sbjct: 16 SVGNIDDALQCYSEAIK--LDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW- 71
Query: 377 ETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
K L + E+A+ + K + + Q + L+
Sbjct: 72 --GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-------GRYSDSLEFYK 186
KG L+ G ++ A + ++ D N L NR G Y + E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYS------NRSAAYAKKGDYQKAYEDGC 62
Query: 187 RALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+ + + P R L + +A++ ++ L+ + N + L
Sbjct: 63 KTVDLKPDWGKGYSRKA--AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P Y N + +Y KGDY+KA +V ++ ++ Y L F A
Sbjct: 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP--DWGKGYSRKAAALEFLNRFEEA 91
Query: 362 LTNFEKVLEIYPDNCETLKAL 382
+E+ L+ +N + + L
Sbjct: 92 KRTYEEGLKHEANNPQLKEGL 112
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 321 YEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y K Y S +G +LK+ D++ A+ + + LEI P
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Query: 375 NCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
N KAL + L + ++A L+KA +I P D + L K
Sbjct: 306 NT---KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 8e-07
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 19/185 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDN------CETLKALGHIY-VQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417
E ++I+ LG I L KA + A + +D
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS------ 153
Query: 418 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 477
+ + + G++ A + + + L K Y + L
Sbjct: 154 ---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 478 QFKDM 482
D
Sbjct: 211 AATDA 215
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 9e-06
Identities = 30/251 (11%), Positives = 60/251 (23%), Gaps = 54/251 (21%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ ++ ++ + +A +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293
A EA K A + F GQ
Sbjct: 74 DEAGNTY----VEAYKCFKSGGNSVNAVDSL-------ENAIQIFTHRGQF--------- 113
Query: 294 ALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYY---MASVKEINKPHEFIFPYYGLG 349
++ + L + DY KA Y + +
Sbjct: 114 --------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKA 402
++ G + A + K+++ N + G + A L++
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 403 AKIDPRDAQAR 413
DP A +R
Sbjct: 226 QSEDPNFADSR 236
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 18/156 (11%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLK-LGDFRSAL 362
+Y + + S G+ A +++ + + LG++ L D+ A+
Sbjct: 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAI 138
Query: 363 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416
+E E Y + + + GQ +A ++ K K + ++ L
Sbjct: 139 DCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198
Query: 417 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
K + G+ + +A ++ ++
Sbjct: 199 K--------DYFLKKGLCQLAATDAVAAARTLQEGQ 226
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-07
Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 11/127 (8%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ L + K D++ A +Y + E++ P + V + GD+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTY-ITNQAAVYFEKGDYNKCRE 59
Query: 364 NFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLL 416
EK +E+ +N E + +G+ Y + + + A K+
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118
Query: 417 KKAGEEV 423
++A + +
Sbjct: 119 QQAEKIL 125
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
R IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ ++GD E A ++ +P YY +G KLGD++ AL N++
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 368 VLEIYPDN 375
+E+ PD+
Sbjct: 61 AIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-- 409
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 410 AQARTLLKKAGEEVPIEVLNNIGVIHF 436
QAR ++ ++ N + H
Sbjct: 71 LQARKMVMDILNFYNKDMYNQLEHHHH 97
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 22/188 (11%)
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL--------------- 112
+ + DV A+L ++ +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 113 --ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170
Y W + L+ + Q +L D N A +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 171 VEFNRGRYSDSLEFYKRALQVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQ 225
V + + L++ + L+ + L + Q ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 226 LDPENVEA 233
L P N A
Sbjct: 269 LVPHNESA 276
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
DYE A +Y ++ E+N P I+ Y L+ + AL + + +E+
Sbjct: 25 KAKDYENAIKFYSQAI-ELN-PSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV 423
+ + LG+ A K+ P D A+ ++ + V
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+S + + ++ +Y KA Y ++ I P I+ G A
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIY-LSNRAAAYSASGQHEKA 64
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ E + P + LG + + A+E K + +
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 304 KSHSYY-NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+ Y N A +Y + G +EKA + ++ ++ + LG + + D++ A
Sbjct: 43 ANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP--KYSKAWSRLGLARFDMADYKGAK 99
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422
+EK +E + + L ++ E + A+ D +
Sbjct: 100 EAYEKGIEAEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAGG 154
Query: 423 VP 424
+P
Sbjct: 155 MP 156
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+G +A+ E +A + L N L +A G++ + E + A V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 194 SCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
A RLG L R+ + A++A+++ ++ +
Sbjct: 77 KYSKAWSRLG--LARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAI--RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F +G Y +++ Y + + P P + + KLG+ +A Q Q+ L+
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNK---AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 231 VEALV--ALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ L A A G ++ + ++ E Y
Sbjct: 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 11/223 (4%)
Query: 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163
+ + A QY ++S++ KG + AK ++A++ ++ +
Sbjct: 47 GHHPDIWYEAAQYLEQSSKL-------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99
Query: 164 AL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
L A E +R +Y Y R L + P + + + + R F++
Sbjct: 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A + V A+M+ ++ + + + Y + ++
Sbjct: 160 AREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKA 324
+ L E L + P KS + ++ S GD
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K+ + Y +K D+ A Y +K P + Y KL F A+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG-YSNRAAALAKLMSFPEAIA 59
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ K +E P+ + + + A E L A D + +
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 47.4 bits (111), Expect = 3e-05
Identities = 36/372 (9%), Positives = 90/372 (24%), Gaps = 26/372 (6%)
Query: 47 AREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREK 106
++ +Q +V+ R++ + + ++R T I +
Sbjct: 201 VNKFEEQQRVQYIRKLYKT--LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQY 258
Query: 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166
L + N + + P T + L K + ++ L
Sbjct: 259 MNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE 318
Query: 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
+ R Y Y +A Q P K + + Q
Sbjct: 319 LSDDLHKARMTYV-----YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373
Query: 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
P + +L+ K+ C ++
Sbjct: 374 IPNSAVLAFSLSEQYELNT----------KIPEIETTILSCIDRIHLDLAALM------- 416
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E A+ ++ Y + + + + I+
Sbjct: 417 -EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + D ++A E L+ + + E + + + + + + L +
Sbjct: 476 AYIEYHIS-KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534
Query: 407 PRDAQARTLLKK 418
+ + +K
Sbjct: 535 SDSHLLKMIFQK 546
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 820 KKINTHVEYCKHLLDAAKIHREAAERE------EQQNRQRQEAARQAALAEEARRKAEEQ 873
+ + ++ K A+ + E++ E+ Q + A AE +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 874 KKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 933
K + L + + R+ ++EE Q+++ + K +++ + ++++ E R+K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAE------KKKMQQQMLDLEEQLEEEEAARQK 973
Query: 934 GGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND 993
+ +K + + + E D++ ++ E + EE
Sbjct: 974 ----LQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 994 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 1053
L + + E+ + + R E + E + D +++ + ++ E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK-LEGESSDLHEQIAELQAQIAELK 1087
Query: 1054 HK 1055
+
Sbjct: 1088 AQ 1089
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 6e-05
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 1/145 (0%)
Query: 819 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 878
++ + +E + +AA H +E + R ++ + AE+AR++ E + +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 879 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 938
+ + + E + E + E + E+ +K R
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIET-EAELERVKKVREMELIYA 773
Query: 939 KKDKSSRSHYETEYAEADMMDYREE 963
+ + A + ++E
Sbjct: 774 RAQLELEVSKAQQLANVEAKKFKEM 798
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 10/239 (4%)
Query: 767 AGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSA----ASNLHLHGFDEKKI 822
A V F ++ + R + + + + L + D + +
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSV 643
Query: 823 NTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRK 882
+ DA + + A +++ L +EAR + E QK +L++ +
Sbjct: 644 E---PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK--ILDQSE 698
Query: 883 LEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDK 942
E +K L + E V+ + A R E + + + K + + + +
Sbjct: 699 AEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758
Query: 943 SSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLE 1001
R E E + E E A + + + + LA AG E
Sbjct: 759 LERVKKVRE-MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPE 816
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 8/108 (7%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 21 VGRKYPEAAACYGRAITR--NPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-----AQARTLLKKA 419
+ LG +++ ++A L++A + + L+ A
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 20/156 (12%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN 364
Y +A K DYE L + + + + + + G + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 365 FEKVLEIYPD-------NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417
FE++L+ + + + E++ + KA +I R +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI-- 235
Query: 418 KAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDAL 452
++ G + ++K A
Sbjct: 236 -------GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 410 AQARTLLKKA 419
+ L+
Sbjct: 65 LPGASQLRHL 74
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 21/247 (8%), Positives = 57/247 (23%), Gaps = 30/247 (12%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
++ F D +A + + + + + + +
Sbjct: 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVT------LFRAWYSRRNFGQLSGS 73
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ + + +T + A ++G+Y A M
Sbjct: 74 VQISMSTLNARI------AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADA----ME 123
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--NCETLKALGHIYVQ 388
+++ + V + + + + A G
Sbjct: 124 ALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183
Query: 389 LGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSF 448
L +A+ L +A +A AR + + + +G +A
Sbjct: 184 LALFTEAERRLTEANDSPAGEACARAIAW------------YLAMARRSQGNESAAVALL 231
Query: 449 KDALGDG 455
+
Sbjct: 232 EWLQTTH 238
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 16 VGRKYPEAAACYGRAIT--RNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ LG +++ ++A L++A + +
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-- 410
L+ G+ AL + + + + A ++ Q E AQELL ++
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 411 ---QARTLLKKAGEEVPIEVL 428
L ++A E ++ L
Sbjct: 77 SLIAKLELHQQAAESPELKRL 97
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1065 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-28 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-25 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-25 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-12 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 8e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 1e-13 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.001 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 5e-11 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-08 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 8e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 6e-07 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 5e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 4e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 1e-04 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 6e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-05 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 8e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-05 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 4e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 7e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 3e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 7e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 | |
| d2pqrb1 | 124 | a.118.8.1 (B:5-128) Mitochondria fission protein F | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (290), Expect = 2e-28
Identities = 61/415 (14%), Positives = 139/415 (33%), Gaps = 34/415 (8%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G + L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ +P EA L + + + + R + + L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ Y + + + +K I F
Sbjct: 121 VQAYV---------SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 405 IDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 464
+ P A N+ +++E+G + A +++ A + L
Sbjct: 232 LSPNHAVV---------------HGNLACVYYEQGLIDLAIDTYRRA------IELQPHF 270
Query: 465 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 524
Y A+A + + + + + L N+ R I + A L
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE---AVRL 327
Query: 525 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579
YR L + ++ A+ LA++ + + LQ ++ EA++++ + +A S +G+
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (269), Expect = 1e-25
Identities = 61/385 (15%), Positives = 133/385 (34%), Gaps = 30/385 (7%)
Query: 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV 91
+ + E + L+++ +F+ ++++ + + + A+ + G
Sbjct: 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ R K + E + +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA------------------Y 124
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
L+ + D + GR ++ Y +A++ P+ A +G G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQG 183
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271
++ A F++A+ LDP ++A + L + +A + + RA + P A+
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALSLSPNHAVVH 240
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
LA ++ G L A+ + P +Y NLA + KG +A Y
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN-- 295
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ L ++ + G+ A+ + K LE++P+ L + Q G+
Sbjct: 296 -TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 392 IEKAQELLRKAAKIDPRDAQARTLL 416
+++A ++A +I P A A + +
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNM 379
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (266), Expect = 3e-25
Identities = 71/426 (16%), Positives = 151/426 (35%), Gaps = 45/426 (10%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 467
A+A +N+G ++ E+G+ + A + ++ AL
Sbjct: 65 LLAEA---------------YSNLGNVYKERGQLQEAIEHYRHALRLKPD---------F 100
Query: 468 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 527
+ + + + + ++ + V +L LL+ + A Y
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
Query: 528 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWV 587
+ ++ A+ L + A+ + L+I +A+ ++ + +A LG++ + +
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220
Query: 588 KAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 647
+A + A A + E ++ A + Y R I
Sbjct: 221 RAVAAYLRALS--------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 648 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF 707
A L EKG ++D + + D NLA++ QGN
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNI 321
Query: 708 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 767
A+++Y+ L + A LA + + Q+ AI ++P+ +
Sbjct: 322 EEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 768 GVAMQK 773
G +++
Sbjct: 380 GNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (251), Expect = 3e-23
Identities = 52/370 (14%), Positives = 124/370 (33%), Gaps = 29/370 (7%)
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
+ + F A ++ + R + + + +++++ + ++ +
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
A V RG+ +++E Y+ AL++ P G +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 222 RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281
+ + + + +A E P A+A + L F
Sbjct: 127 ALQYNPDLYCVR----SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341
G+ +L E A+ + P +Y NL +++A Y+ + ++
Sbjct: 183 GEIWLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNH 236
Query: 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401
+ L V + G A+ + + +E+ P + L + + G + +A++
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 402 AAKIDP-----------------RDAQARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFE 442
A ++ P +A L +KA E P +N+ + ++G+ +
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 443 SAHQSFKDAL 452
A +K+A+
Sbjct: 357 EALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.2 bits (160), Expect = 7e-12
Identities = 55/289 (19%), Positives = 88/289 (30%), Gaps = 27/289 (9%)
Query: 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 564
LA Q D AA + + D L L++I L S A+K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 565 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG------------ 612
N A S LG++ + +A E +R A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 613 --------NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 664
+R++ LE+AK Y + I + A + G V
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181
Query: 665 KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 724
+G+ ++ F + D +INL +V F A+ Y L +
Sbjct: 182 QGEIWLAIHHFEKAVTLDP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 725 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
A + LA +YE + RAI L P + A+++
Sbjct: 237 --AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 1e-05
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 695 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 754
+ LAH + G+F A + R+ NT LL L+ H++ + AI
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGV--LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 755 HLAPSNYTLRFDAGVAMQKF 774
P + G ++
Sbjct: 61 KQNPLLAEAYSNLGNVYKER 80
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 26/156 (16%)
Query: 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY------- 93
+ +A Y++QG ++ + E+ ++ D L G
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 94 -------------TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
L I+ +Q EE A + Y KA + + +L
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+G++++A +K + A
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.6 bits (211), Expect = 7e-18
Identities = 33/240 (13%), Positives = 63/240 (26%), Gaps = 16/240 (6%)
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
S ++ ++A + + +LG L + +Q+ L D E +
Sbjct: 5 SAQYLRQAEVLKADMTDS-KLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 241 DLQANEAAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
A + +G K + A +L F QL + V N
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF------YTQLLQELCTVFN 114
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L + + +S LG +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQHC---LVHLGDIARYRNQTS 169
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
A + + ++ P N + L + G ++ + A T L+KA
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (159), Expect = 2e-11
Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 28/238 (11%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274
++ Q ++A L + ++ + A + + Q+ A+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ------DLYQKMLVTDLEYALDKKVE 57
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
+ + L A N ++ + + G Y +
Sbjct: 58 Q-DLWNHAFKNQITTLQGQAKNRANPNRSEVQANL-SLFLEAASGFYTQLLQELC---TV 112
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
N LG + K + + L LG I Q +
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQ 170
Query: 395 AQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
A+ R AA++ P + Q N + ++ KG+ + + ++
Sbjct: 171 AESYYRHAAQLVPSNGQPY---------------NQLAILASSKGDHLTTIFYYCRSI 213
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (157), Expect = 3e-11
Identities = 25/326 (7%), Positives = 78/326 (23%), Gaps = 48/326 (14%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ QY +A + + +G ++ ++ ++
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL------------------------- 39
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
Y++ L ++ L + Q +
Sbjct: 40 ------------YQKMLVTDLEYALDKKVEQDLWNHAFKNQI---TTLQGQAKNRANPNR 84
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
+ V + + + ++++ F + C + + L + +
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
++ + H +L + +A YY PY L +
Sbjct: 145 SSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYR---HAAQLVPSNGQPYNQLAILA 196
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
GD + + + + + + L + + + + +
Sbjct: 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKF 256
Query: 413 RTLLKKAGEEVPIEVLNNIGVIHFEK 438
+ + + L F++
Sbjct: 257 HGHVYLSKSLEKLSPLREKLEEQFKE 282
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (137), Expect = 8e-09
Identities = 37/314 (11%), Positives = 81/314 (25%), Gaps = 41/314 (13%)
Query: 520 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579
+A L + + K D D+ L A + +R LQ +L + L + +Y + DL
Sbjct: 5 SAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQ---DLYQKMLVTDLEYALDKKVEQDL 60
Query: 580 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 639
N + T + + + + + AA + +
Sbjct: 61 W--NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASG-----------FYTQLLQ 107
Query: 640 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 699
V ++ G++ ++ + ++L
Sbjct: 108 ELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-------QHCLVHLGD 160
Query: 700 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 759
+ + + A Y++ + N LA R+I +
Sbjct: 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYN--QLAILASSKGDHLTTIFYYCRSIAVKFP 218
Query: 760 NYTLRFDAGVAMQKFSASTLQKTRRTADEVRSTVAELENAVRVFSHLSAASNLHLHGFDE 819
+ A+ K S + + + A H H +
Sbjct: 219 FPAASTNLQKALSKALESRDEVKTKWGVSD---------------FIKAFIKFHGHVYLS 263
Query: 820 KKINTHVEYCKHLL 833
K + + L
Sbjct: 264 KSLEKLSPLREKLE 277
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ LG I KQ + + + V G + + + QA S ++
Sbjct: 123 SSQLGIISNKQTHTSA----IVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ N A + ++G + ++ +Y R++ V P A
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (173), Expect = 9e-14
Identities = 49/320 (15%), Positives = 102/320 (31%), Gaps = 23/320 (7%)
Query: 148 SSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 1 SATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA-WQYL 59
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G + + Q A A +R L+L P+N AL+ALAV + + + R
Sbjct: 60 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 119
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAV-----------TNHGPTKSHSYYNLA 312
Y + A ++ L +L + + L
Sbjct: 120 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
++ G+Y+K ++ + LG A+ + + LE+
Sbjct: 180 VLFNLSGEYDK---AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIG 432
P + LG + LG +A E +A + + R E + + +
Sbjct: 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE----NIWSTLR 292
Query: 433 VIHFEKGEFESAHQSFKDAL 452
+ G+ ++ + L
Sbjct: 293 LALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 47/272 (17%), Positives = 82/272 (30%), Gaps = 10/272 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +GD A L + A+V+ + + + + LG Q + A++ +
Sbjct: 22 PFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQELLAISALRR 78
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEV 427
LE+ PDN L AL + +A E+LR + P A T ++ +
Sbjct: 79 CLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 138
Query: 428 LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR 487
I F + F A+ D + V+ +
Sbjct: 139 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 198
Query: 488 FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAK 547
N L L N + E + YR L Y+ + L
Sbjct: 199 LSVRPNDYLLWNKLGATLANGNQSEEAVAA-------YRRALELQPGYIRSRYNLGISCI 251
Query: 548 ARNNLQLSIELVNEALKVNGKYPNALSMLGDL 579
+ ++E EAL + K G +
Sbjct: 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 1e-04
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 498 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 557
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 558 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 616
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 617 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 674
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 675 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 734
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 735 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 773
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.2 bits (173), Expect = 1e-13
Identities = 29/254 (11%), Positives = 65/254 (25%), Gaps = 13/254 (5%)
Query: 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKAR 217
R+ + L + E + L F + L+V+P G L R +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
+ R L+ D N + QA + + + +Y +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCL 187
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ L ++ +++ +Y + +
Sbjct: 188 LPQLHPQ-------PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH---RWLLG 237
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
E +F + L + +++ T+ L L ++ +
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 398 LLRKAAKIDPRDAQ 411
+DP A
Sbjct: 298 YFSTLKAVDPMRAA 311
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 0.001
Identities = 14/147 (9%), Positives = 36/147 (24%), Gaps = 9/147 (6%)
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ Y + + + + + + + E +Q++ +
Sbjct: 180 SWHYRSCLLPQLHPQPD----SGPQGRLPENVLLKELELVQNAFFT----DPNDQSAWFY 231
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
L + + +S + + + C I + + L
Sbjct: 232 HRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI-ILLMRALDPLL 290
Query: 212 QLGKARQAFQRALQLDPENVEALVALA 238
+ Q F +DP L L
Sbjct: 291 YEKETLQYFSTLKAVDPMRAAYLDDLR 317
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (147), Expect = 5e-11
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 7/147 (4%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + PH I + +G + L + A F
Sbjct: 7 SLWNEGVLAADKKDWKGALDAF----SAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 60
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-AQARTLLKKAGEEVPI 425
+ + G +Y Q + + A + L++A + +L +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 120
Query: 426 EVLNNIGVIHFEKGEFESAHQSFKDAL 452
EVL NI ++ +K E++ A + A
Sbjct: 121 EVLYNIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 3e-06
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + + A + IN+ Y+ G + + + A
Sbjct: 33 DPHSRICFNIGCMYTILKNMTE---AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 406 DPRDAQAR 413
++
Sbjct: 150 KSEPRHSK 157
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 3e-04
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A ++ + G + + +A AF + D+ A
Sbjct: 17 DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 73
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQ---------------VHPSCPGAIRLGIGLCRYKL 210
+ + + +Y +++ K AL + I K
Sbjct: 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ KA + A + E + + A+ +
Sbjct: 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 37/224 (16%), Positives = 66/224 (29%), Gaps = 11/224 (4%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ LG AR F +AL + P+ E L + QA E E
Sbjct: 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLE 99
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ P A ++ G+ L + P L + + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ K + + + LG + + + + ET L
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYL 215
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQ----ARTLLKKAGEE 422
G Y+ LG ++ A L + A + + A L G++
Sbjct: 216 GKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQD 259
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 60.3 bits (144), Expect = 5e-10
Identities = 49/314 (15%), Positives = 87/314 (27%), Gaps = 31/314 (9%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 188
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 189 LQVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--------ENVEALV 235
Q+ + + G L A + ++A QL + +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE------Q 289
A + Y + L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGL 348
L H S++ + GD A + + K E H + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 403 AKIDPRDAQARTLL 416
K+ R +
Sbjct: 318 LKLANRTGFISHFV 331
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 53.8 bits (127), Expect = 6e-08
Identities = 38/323 (11%), Positives = 82/323 (25%), Gaps = 34/323 (10%)
Query: 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKL 210
+ D + +A V N G ++ K AL+ P +G +
Sbjct: 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 64
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK---GMEKMQRAFEIYPYC 267
G+L ++ Q+ Q+ ++ AL + Q+ E ++AF++
Sbjct: 65 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124
Query: 268 --------AMALNYLANHFFFTGQ------HFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
+ A + + ++ +
Sbjct: 125 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 184
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+ GD +A +
Sbjct: 185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 244
Query: 374 DNCETL----KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLN 429
N L + + + LG+ E A+ +L + + L L
Sbjct: 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL---------NRNLL 295
Query: 430 NIGVIHFEKGEFESAHQSFKDAL 452
+ ++++ G A + DAL
Sbjct: 296 LLNQLYWQAGRKSDAQRVLLDAL 318
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 40.7 bits (93), Expect = 8e-04
Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 21/285 (7%)
Query: 498 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 551
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 552 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 603
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 604 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 663
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 664 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 723
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 724 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764
+ LL L + +++A + D ++ LL A+ LA +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 328
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 52.7 bits (126), Expect = 7e-08
Identities = 13/71 (18%), Positives = 27/71 (38%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 409 DAQARTLLKKA 419
+ L+
Sbjct: 63 YLPGASQLRHL 73
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/130 (11%), Positives = 36/130 (27%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + +A + + S +LL G+ E+A ++ + +P +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
D + A + + L + + + +L E
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 233 ALVALAVMDL 242
+ D+
Sbjct: 135 LANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ L++G+++QA ++A + + G + + E +++++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L + + A+ A + + E + + + + + + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS--- 119
Query: 255 EKMQRAFEIYPYCAMALNYLA 275
E + E+ N +
Sbjct: 120 ELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.5 bits (102), Expect = 8e-05
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 4/112 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + GD+E+A M S+K P ++ L + +
Sbjct: 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-YLPGASQLRHLVKAAQARKDF 83
Query: 362 LTNFEKVLEI-YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + ++ + E+ EL + ++
Sbjct: 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 2e-04
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 629 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 688
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 689 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 748
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 749 SLLRAIHLAPSNYTLRFDAGVA 770
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 41.9 bits (98), Expect = 2e-04
Identities = 14/141 (9%), Positives = 41/141 (29%), Gaps = 17/141 (12%)
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
++ S+G ++A + ++K P + ++ GDF A + +++
Sbjct: 3 WKNALSEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNI 431
+P+ L H+ + + A + + +
Sbjct: 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTK--------------SLVS 105
Query: 432 GVIHFEKGEFESAHQSFKDAL 452
+ ++E +
Sbjct: 106 FNLSMVSQDYEQVSELALQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.4 bits (94), Expect = 6e-04
Identities = 10/138 (7%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+++ +E + A + P A + G ++ ++ + P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGAS 68
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L + + + + + D+ ++
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTK--SLVSFNLSMVSQDYEQVSELALQIE 126
Query: 370 EIYPDNCETLKALGHIYV 387
E+ + V
Sbjct: 127 ELRQEKGFLANDTSFSDV 144
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (112), Expect = 6e-07
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
+ S D K + + + F Y D R + E++L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 370 EI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLK 417
+ + + L +L + EKA + +R + +P++ QA+ L +
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (99), Expect = 3e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLG---QACVEFNRGRYSDSLEFYKRALQVHPS 194
L++ ++ + F+ A + + + L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 195 CPGAIRL-GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
+ + + Y+L + KA + + LQ +P+N +A ++D
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (97), Expect = 5e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ + N E+ ++ A + Y D + G+ +
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ E + L +L ++ AL +L+ P N + + I +
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 391 Q 391
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.001
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 2/92 (2%)
Query: 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267
+ L K + FQ + A ++ IRKG+ ++
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69
Query: 268 AM--ALNYLANHFFFTGQHFLVEQLTETALAV 297
+ YLA + ++ + L
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 662 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 721
L + F + A S S Q + + + + + L K
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQF--EYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 722 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 760
+ YLA +Y ++++ K + + P N
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.7 bits (112), Expect = 4e-06
Identities = 31/273 (11%), Positives = 72/273 (26%), Gaps = 39/273 (14%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------D 227
+ ++ ++ + +A ++ +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQAATIY---------------RLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHF 285
E V + +E + F N+ H
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 286 LVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY----MASVKEIN 336
+ + LA + + A G Y +A Y +S+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQ--L 389
+ G QL D +A ++ P+ LK+L +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 390 GQIEKAQELLRKAAKIDPRDAQARTLLKKAGEE 422
Q+ + + ++D +K++ ++
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESIQQ 286
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 22/180 (12%), Positives = 49/180 (27%), Gaps = 7/180 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEV- 423
E ++I+ + + + E + L AK A +
Sbjct: 100 LENAIQIFTHRGQFRR---GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 424 PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQ 483
+ + G++ A + + + L K Y + L D
Sbjct: 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV 216
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.6 bits (91), Expect = 0.001
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 531 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 584
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 644
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 645 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 702
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 703 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 757
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 758 PSNYTL 763
T+
Sbjct: 271 KWKITI 276
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 6e-06
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ L + +++ DY L+ +++ + + L + GD AL
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+K+LE+ P++ L + + +
Sbjct: 68 LTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 398 LLRKAAKIDPRDAQARTLLKKA 419
L +K ++DP +A LK
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 8e-06
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ A Y DYE A +Y +++ + L+ + AL
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALG 65
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ + +E+ + + LG+ A K+ P D A+ ++
Sbjct: 66 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.4 bits (106), Expect = 2e-05
Identities = 32/248 (12%), Positives = 70/248 (28%), Gaps = 27/248 (10%)
Query: 185 YKRALQVHPSCP-------------GAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN 230
Y++ L V P + G +A ++RA+ L +N
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+ A A + + + ++ +I P +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMI 156
Query: 291 TETALAVTNHGPTKSHSYYNLAR-SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A T+ H Y A Y+ D A + +K+ E++ Y
Sbjct: 157 FKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY- 212
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 405
L + + FE+VL E + ++ G + ++ ++
Sbjct: 213 --LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
Query: 406 DPRDAQAR 413
+ + +
Sbjct: 271 FREEYEGK 278
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.1 bits (95), Expect = 4e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 19/255 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL-LGQACVEFNRGRYSDSLEFYKRAL 189
KG + AK ++A++ ++ + L A E +R +Y Y R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ P + + + + R F++A + V A+M+ ++
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--D 184
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + + Y + ++ + L E L + P KS +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 310 NLARSYHSK-GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++ S GD S+ ++ K F + G + L + K
Sbjct: 245 ARFLAFESNIGDLA--------SILKVEKRRFTAFR-------EEYEGKETALLVDRYKF 289
Query: 369 LEIYPDNCETLKALG 383
+++YP + LKALG
Sbjct: 290 MDLYPCSASELKALG 304
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 42.6 bits (99), Expect = 5e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
A + +L + + ++ NLA Y +Y K K
Sbjct: 34 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK---AVECCDKA 90
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
Query: 395 AQE-----LLRKAAKID 406
+ +K A+ D
Sbjct: 151 RDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.0 bits (87), Expect = 0.002
Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQV 351
++ Y G Y +A + Y V + + + + L
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LKL ++ A+ +K L + N + L G + + + E A+ K +++P++
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 412 ARTLLKKA 419
AR +
Sbjct: 134 ARLQIFMC 141
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.6 bits (99), Expect = 7e-05
Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 13/194 (6%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
A L N F ++ A+ P + Y N A Y E+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQ---A 57
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
+ + + + ++ LGQ QL++ + A+ N ++ + + +
Sbjct: 58 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117
Query: 388 QLGQ--IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP-----IEVLNNIGVIHFEKGE 440
++ + + E R + + R + + E+ E + G I ++
Sbjct: 118 RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177
Query: 441 FESAHQSFKDALGD 454
E+ H + + +
Sbjct: 178 IEAKHDKYMADMDE 191
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 7/189 (3%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G + + +A + RA+ +P A+ L+ + + + +RA E+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALEL 67
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A +L + + A ++ + ++ + S ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKR 124
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + ++ H ++ + + +L + + E I
Sbjct: 125 WNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 384 HIYVQLGQI 392
+ ++
Sbjct: 184 KYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 0.003
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
+ A Y +A + + + L + EQA + + LE D +V A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
+ Y +++ +RA + I L A++ +++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI------PSALRIAKKKRWNSIE 129
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ E+ + + L A E + +E+ QR E +
Sbjct: 130 ERRIHQESELHSYLTRLIAAER---ERELEECQRNHEGHE 166
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 5/124 (4%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFR 359
++ L + K D++ A +Y + + + Y+ G
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
A+ + E Y + +G+ Y + + + A K+ ++A
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121
Query: 420 GEEV 423
+ +
Sbjct: 122 EKIL 125
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGA------IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG K DF +AL +++K E+ P N + +Y + G K +EL KA ++
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 408 RDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 452
+ + + KA IG +F++ +++ A + +L
Sbjct: 70 ENREDYRQIAKAY--------ARIGNSYFKEEKYKDAIHFYNKSL 106
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 13/145 (8%)
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------- 344
+ L + S N+ ++ ++E A Y ++ +
Sbjct: 14 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73
Query: 345 ------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
+G +LK+ D++ A+ + + LEI P N + L + L + ++A
Sbjct: 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133
Query: 399 LRKAAKIDPRDAQARTLLKKAGEEV 423
L+KA +I P D + L K +++
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVKQKI 158
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 6e-04
Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
F +D ++V+ ++ ++ + + A + Y +
Sbjct: 9 FPEDADVDLKDVDKILLIS---EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE 65
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L P N+ D++ + ++ +
Sbjct: 66 DADGAKL--------------QPVALSCVLNIGACKLKMSDWQG---AVDSCLEALEIDP 108
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
Y Q L ++ AL + +K EI P++ L + ++ + +
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 13/133 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-------------IFPYYGLGQ 350
+ + K + +A + Y ++ E+ I L
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 411 QARTLLKKAGEEV 423
R + ++
Sbjct: 136 DIRNSYELCVNKL 148
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335
+ F+ + + + + + NLA Y+ DY KA + +K
Sbjct: 38 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97
Query: 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ ++ + G A N K + P+N + + +L + K
Sbjct: 98 KNNVKALYKLG---VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (94), Expect = 7e-04
Identities = 25/291 (8%), Positives = 73/291 (25%), Gaps = 21/291 (7%)
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
V +I +F Y V + A +E+ N + L +
Sbjct: 33 VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 92
Query: 392 -IEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 450
+ + + + P++ Q ++ V+ + + D
Sbjct: 93 DLHEEMNYITAIIEEQPKNYQVW---------------HHRRVLVEWLRDPSQELEFIAD 137
Query: 451 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 510
+ + + + + + D + + + V+ N
Sbjct: 138 --ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 195
Query: 511 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 570
++ +I + + + ++ L+ + P
Sbjct: 196 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSP 255
Query: 571 NALSMLGDL--ELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 618
++ L D+ ++ + ++ A + T+ W Y
Sbjct: 256 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 9e-04
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ + S G+ + A Y + I Y K GD++ A
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYS---EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKA 419
+ K +++ PD + L + E+A+ + K + + Q + L+
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
KG L+ G ++ A + ++ D N ++ +G Y + E + + + P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
L + +A++ ++ L+ + N + L
Sbjct: 69 DWGK-GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (85), Expect = 0.003
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 357 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTL 415
D R + + + E L L +LG+ A+ + + + + Q L
Sbjct: 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112
Query: 416 LK 417
Sbjct: 113 KS 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1065 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.68 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.14 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.99 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.76 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.66 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.17 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.6e-37 Score=281.51 Aligned_cols=385 Identities=21% Similarity=0.280 Sum_probs=169.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999819999999999999992999999999999999984991999999999997399993689988999999819
Q 001509 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1065)
Q Consensus 132 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1065)
+.+|..++..|++++|+..|+++++.+|+++.++..+|.+++..|++++|+..|+++++.+|++ ..++..+|.++..+|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHC
T ss_conf 9999999986999999999999998689989999999999998699999999999999859998-999999999964200
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98999999999997399999999999999987120675999999999999859998999999999999729978999999
Q 001509 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1065)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1065)
++++|+..+..++...|.................. ...+...........+................+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 02222222221211222222222222222222222---222222211122222222222222222221100013567888
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99985047898825899999999997299999999999999820899984331552999999809989999999999975
Q 001509 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1065)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1065)
...+.. .|..+.++..+|..+...|+++.|...+.+++. ..|....++..+|.++...|++++|+..+.++...
T Consensus 159 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 159 LKAIET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHCC---CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 874025---861068998636301024719999999999998---49464999999715522005299999999985777
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99969999999999997299999999999999709994999999998099899999998999999719989999999999
Q 001509 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 451 (1065)
Q Consensus 372 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 451 (1065)
.|.....+..+|.++...|++++|+..|++++...|++. .++.++|.++...|++.+|+..+..+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~ 297 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP---------------DAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---------------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 554799999999999987899999999999998499989---------------99999999999748799999999865
Q ss_pred HCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 70330121013555103533345677755566543001388876789731689999999999708959999999999988
Q 001509 452 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 531 (1065)
Q Consensus 452 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 531 (1065)
+. ..|.....+..++.++...|++++|+..|+++++.
T Consensus 298 ~~-------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 298 LR-------------------------------------------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HH-------------------------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HC-------------------------------------------CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 40-------------------------------------------48730010157999999878999999999999986
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 78929999999999998099889999999999877999589998614530166
Q 001509 532 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584 (1065)
Q Consensus 532 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 584 (1065)
+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++..+|
T Consensus 335 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 88989999999999998599999999999999709998999999999999858
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-35 Score=272.19 Aligned_cols=288 Identities=17% Similarity=0.213 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999850299994459999999998199999999999999929999999999999999849919999999999973
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
+|+..|+++++.+|.++.+++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+..+...
T Consensus 17 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~ 96 (388)
T d1w3ba_ 17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999998689989999999999998699999999999999859998999999999964200022222222212112
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99993689988999999819989999999999973999999999999999871206759999999999998599989999
Q 001509 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1065)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 271 (1065)
.|.. .......+......+....+...........+................+. ...+...+.+.+...|.++.++
T Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 172 (388)
T d1w3ba_ 97 KPDF-IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR---LEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp CTTC-HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 2222-22222222222222222222222111222222222222222222211000---1356788887402586106899
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999729978999999999850478988258999999999972999999999999998208999843315529999
Q 001509 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1065)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1065)
..++..+...+++..|...+..++.. .|....++..+|.++...|++++|+..|.++.. ..+.....+..+|.+
T Consensus 173 ~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 173 SNLGCVFNAQGEIWLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 86363010247199999999999984---946499999971552200529999999998577---755479999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9980998999999999997599969999999999997299999999999999709994
Q 001509 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1065)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 409 (1065)
+...|++++|+..|+++++.+|+++.++..+|.++...|++.+|+..++.++...|..
T Consensus 247 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 304 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9987899999999999998499989999999999997487999999998654048730
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.5e-24 Score=190.67 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 45999999999819999999999999992999999999999999984991999999999997399993689988999999
Q 001509 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1065)
Q Consensus 129 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1065)
..++.+|..++..|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|.+++.++|++ ...++.+|.++.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 98 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-QTALMALAVSFT 98 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCC
T ss_conf 9999999999985999999999999998689989999999999998377588999998510022222-222222222222
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 81998999999999997399999
Q 001509 209 KLGQLGKARQAFQRALQLDPENV 231 (1065)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~ 231 (1065)
..|++++|+..+.+++...|...
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~ 121 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYA 121 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTG
T ss_pred CCCCCCCCCCCHHHHHHHCCCHH
T ss_conf 22211211100026777361067
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.1e-24 Score=186.18 Aligned_cols=246 Identities=15% Similarity=0.136 Sum_probs=158.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999999970895999999999998878929999999999998099889999999999877999589998614530166
Q 001509 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 584 (1065)
Q Consensus 505 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 584 (1065)
.+..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++..|+..+.+++.++|+++..+..+|.++...|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999985999999999999998689989999999999998377588999998510022222222222222222222
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--------H------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5399999999943047987768--------9------9866889999987531017058765599999999999852875
Q 001509 585 DWVKAKETFRAASDATDGKDSY--------A------TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 650 (1065)
Q Consensus 585 ~~~~A~~~~~~al~~~~~~d~~--------~------~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 650 (1065)
++..|+..+.+++...|..... . ....... +... +.+.+|...|.+++..+|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~~~~~a~~~~~~al~~~p~ 168 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSD------------SLFLEVKELFLAAVRLDPT 168 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH-HHHH------------HHHHHHHHHHHHHHHHSTT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH-HHHH------------HHHHHHHHHHHHHHHHHHC
T ss_conf 11211100026777361067888766400000001000014788-8876------------5799999999999997130
Q ss_pred --CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf --469985898999804990889999999999824898886357999999999982899999999999998743799699
Q 001509 651 --NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 728 (1065)
Q Consensus 651 --~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 728 (1065)
++.++..+|.++...|++++|+..|++++...| +++.+|+++|.+|..+|++++|+..|+++++. .|.++.
T Consensus 169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 241 (323)
T d1fcha_ 169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIR 241 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCHH
T ss_conf 12221110368888888877550021112222222-----22111013330122111101378887789988--432499
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999999982019999999999998399982047889998
Q 001509 729 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 729 ~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
+++.+|.+|...|++++|+..|++++.+.|++......++.+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999987899999999999997097570011245999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.1e-19 Score=155.13 Aligned_cols=206 Identities=12% Similarity=0.036 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHC
Q ss_conf 989999999999999700222136664899999999999985029999445999999999819-9999999999999929
Q 001509 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEAD 158 (1065)
Q Consensus 80 ~~~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~ 158 (1065)
|+-..++..++.++...+..+ +|+.++++++.++|.+..+|..+|.++...| ++++|+..+++++..+
T Consensus 40 p~~~~a~~~~~~~~~~~e~~~-----------~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~ 108 (315)
T d2h6fa1 40 DKFRDVYDYFRAVLQRDERSE-----------RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 108 (315)
T ss_dssp HHHHHHHHHHHHHHHHTCCCH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 779999999999999588669-----------999999999987988769999999999983767999999999999887
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999999999984991999999999997399993689988999999819989999999999973999999999999
Q 001509 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
|++..+|..+|.++...|++.+|+..+.+++..+|.+ ..+|..+|.++..+|++++|+..|.++++++|.+..+|..++
T Consensus 109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~ 187 (315)
T d2h6fa1 109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY 187 (315)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 7422689887588885053788998875554321004-688998877888888667899999999987974499998899
Q ss_pred HHHHHCCC---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99987120---6759999999999998599989999999999997299789999999998504
Q 001509 239 VMDLQANE---AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1065)
Q Consensus 239 ~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1065)
.++...+. .+.+.+|+..+.+++..+|.+..++..++.++... ...++...+..++...
T Consensus 188 ~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 188 FVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHC
T ss_conf 9998745631023547767999999984988569999987798862-7188999999999728
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4e-20 Score=158.30 Aligned_cols=222 Identities=9% Similarity=-0.014 Sum_probs=133.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 7897316899999999997089599999999999887892999999999999809-988999999999987799958999
Q 001509 496 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALS 574 (1065)
Q Consensus 496 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 574 (1065)
...|....++..++.++...+.+++|+..+.+++..+|.+..+|..+|.++...| ++++|+.++++++..+|++..+|.
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~ 116 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26977999999999999958866999999999998798876999999999998376799999999999988774226898
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 86145301665399999999943047987768998668899999875310170587655999999999998528754699
Q 001509 575 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 654 (1065)
Q Consensus 575 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 654 (1065)
.+|.++..+|++.+|+..+.+++...|. ...++..+|.+ +... +.+++|+..|.+++.++|.+..+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~a 182 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNSV 182 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8758888505378899887555432100-46889988778-8888------------86678999999999879744999
Q ss_pred HHHHHHHHHHCCC------CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 8589899980499------0889999999999824898886357999999999982899999999999998743799699
Q 001509 655 ANGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 728 (1065)
Q Consensus 655 ~~~la~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 728 (1065)
++.++.++...+. +.+|+..+.+++...| .+..+|+++|.++...| ..++...+..+++..+....+.
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~ 256 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPY 256 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCHH
T ss_conf 98899999874563102354776799999998498-----85699999877988627-1889999999997287757899
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 001509 729 ILLYLARTH 737 (1065)
Q Consensus 729 ~~~~la~~~ 737 (1065)
++..++.++
T Consensus 257 ~~~~l~~~y 265 (315)
T d2h6fa1 257 LIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=5.6e-21 Score=164.53 Aligned_cols=265 Identities=8% Similarity=-0.031 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--H
Q ss_conf 99999999985029999445999999999819----------99999999999999299999999999999998499--1
Q 001509 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (1065)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~ 178 (1065)
.+|+.++.+++..+|++..+|..++.++...+ .+.+|+.+|++++..+|.+..+|..+|.++...+. +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999988785899999999999976500347787789999999999998688867989886489988430428
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999739999368998899999981998999999999997399999999999999987120675999999999
Q 001509 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1065)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~ 258 (1065)
.+|+..+.+++..+|......+...|.++...+.++.|+..+++++..+|.+..+|..+|.++...|+ +.+|+..+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHH
T ss_conf 99999999998559212111105789998744552899999999887189879999999999998268---898999887
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99985999899999999999972997899999999985047898825899999999997299999999999999820899
Q 001509 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1065)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1065)
+++...|... .....+...+..+.+...|..++. ..
T Consensus 203 ~~~~~~~~~~-----------------------------------------~~~~~~~~l~~~~~a~~~~~~~l~---~~ 238 (334)
T d1dcea1 203 LPENVLLKEL-----------------------------------------ELVQNAFFTDPNDQSAWFYHRWLL---GR 238 (334)
T ss_dssp SCHHHHHHHH-----------------------------------------HHHHHHHHHCSSCSHHHHHHHHHH---SC
T ss_pred HHHHHHHHHH-----------------------------------------HHHHHHHHHCCHHHHHHHHHHHHH---HC
T ss_conf 7677689999-----------------------------------------999999882441488999998877---18
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 98433155299999980998999999999997599969999999999997299999999999999709994999999998
Q 001509 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKK 418 (1065)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 418 (1065)
|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|++++.++|....
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~------- 311 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA------- 311 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-------
T ss_conf 6605678879999999866999999999887629137999999999998789999999999999987966399-------
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 0998999999989999997
Q 001509 419 AGEEVPIEVLNNIGVIHFE 437 (1065)
Q Consensus 419 ~~~~~~~~~~~~la~~~~~ 437 (1065)
.|.+++..+..
T Consensus 312 --------y~~~L~~~~~~ 322 (334)
T d1dcea1 312 --------YLDDLRSKFLL 322 (334)
T ss_dssp --------HHHHHHHHHHH
T ss_pred --------HHHHHHHHHHH
T ss_conf --------99999999867
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=9.6e-20 Score=155.51 Aligned_cols=52 Identities=6% Similarity=-0.127 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 5599999999999852875469985898999804990889999999999824
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
+++.+|+..+.+++..+|.+..++..+|.++...|++++|+..|+++++..|
T Consensus 256 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 6699999999988762913799999999999878999999999999998796
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=8.2e-17 Score=134.07 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=49.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC----HHHH
Q ss_conf 858989998049908899999999998248988863579999999999828999999999999987437996----9999
Q 001509 655 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQIL 730 (1065)
Q Consensus 655 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~ 730 (1065)
+..++.++...|+++.|...+.+++...+.... .....+.++|.++...|+++.|+..+++++........ ..++
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999998604489899999999976224666-7778899999999875879999999999998876426674799999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf 9999999982019999999999998399
Q 001509 731 LYLARTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 731 ~~la~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
..+|.+|...|++++|...|++++.+.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999987899999999999999765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.8e-17 Score=137.46 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999982899999999999998
Q 001509 693 VWINLAHVYFAQGNFALAMKMYQNCLR 719 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 719 (1065)
++..+|.+|..+|++++|+..|++++.
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999987899999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=7.8e-17 Score=134.22 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999850299----994459999999998199999999999999929999999999999999849919999999
Q 001509 110 FILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1065)
Q Consensus 110 ~~~A~~~~~~a~~~~p----~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1065)
+..|+..+++++...+ ....+++.+|.+|...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99999999999876336999999999999999998799999999999854349998899960042788877788752344
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999739999368998899999981998999999999997399999999999999987120
Q 001509 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1065)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1065)
++++..+|+. ..+++.+|.++..+|+++.|+..|+++++.+|.+......++......+.
T Consensus 95 ~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 95 DSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 6899987611-11588899999987667999999999986530007888999999988535
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.9e-17 Score=138.75 Aligned_cols=124 Identities=26% Similarity=0.231 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999997002221366648999999999999850299994459999999998199999999999999929999
Q 001509 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1065)
Q Consensus 82 ~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1065)
+..+++.+|.+|..+|+.+ +|+..|++++.++|+++.+|..+|.++...|++++|+..|++++..+|++
T Consensus 36 ~a~~~~~~G~~y~~~g~~~-----------~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 104 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 104 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999879999-----------99999998543499988999600427888777887523446899987611
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999999984991999999999997399993689988999999819989999
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (1065)
+.+++.+|.++...|++.+|+..|+++++..|.+ ......++.++...+....+.
T Consensus 105 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 105 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 1158889999998766799999999998653000-788899999998853587899
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.68 E-value=2.9e-13 Score=108.16 Aligned_cols=182 Identities=14% Similarity=0.149 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC
Q ss_conf 999999998502999944599999999981--------------9999999999999992-9999999999999999849
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--------------GEVEQASSAFKIVLEA-DRDNVPALLGQACVEFNRG 176 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g 176 (1065)
.+..+|++++...|.++..|+..+..+... +..++|...|++++.. .|.+...|...+..+...|
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~ 113 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999998777999999999999987073688777876310245999999999998749987999999999998613
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Q ss_conf 9199999999999739999368998899999981998999999999997399999999999999987-120675999999
Q 001509 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGME 255 (1065)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~~~A~~ 255 (1065)
+++.|..+|.+++...|.....+|...+.+....|+++.|+..|.+++...|.+...+...+.+... .++ .+.|..
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~---~~~a~~ 190 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAFK 190 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---HHHHHH
T ss_conf 38999999999998715786999999999999827868899999999980888679999999999876557---789999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999985999899999999999972997899999999985
Q 001509 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1065)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1065)
.+++++..+|.++..+..++.+....|+++.|..++++++.
T Consensus 191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999986100388999999999986986899999999998
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=7.2e-13 Score=105.25 Aligned_cols=227 Identities=9% Similarity=0.024 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCC
Q ss_conf 999999999988789299999999999980--------------9988999999999987-7999589998614530166
Q 001509 520 AASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELKND 584 (1065)
Q Consensus 520 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 584 (1065)
.+..+|++++...|.++..|+..+...... +..+.|...+++++.. .|.+..+|..++.++...|
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~ 113 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999998777999999999999987073688777876310245999999999998749987999999999998613
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-
Q ss_conf 5399999999943047987768998668899999875310170587655999999999998528754699858989998-
Q 001509 585 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA- 663 (1065)
Q Consensus 585 ~~~~A~~~~~~al~~~~~~d~~~~~~lg~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~- 663 (1065)
+++.|...|.+++...|......+...+.+ .... +.++.|..+|.+++...|.+...+...+.+..
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~ 180 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 389999999999987157869999999999-9982------------786889999999998088867999999999987
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHH
Q ss_conf 049908899999999998248988863579999999999828999999999999987437996--999999999999820
Q 001509 664 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAE 741 (1065)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~~g 741 (1065)
..|+.+.|..+|+.++...| +++.+|...+..+...|+++.|...|+++++..+.++. ..++..........|
T Consensus 181 ~~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G 255 (308)
T d2onda1 181 CSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 65577899999999998610-----0388999999999986986899999999998278986899999999999999849
Q ss_pred CHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 19999999999998399982047
Q 001509 742 QWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 742 ~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
+...+..+++++.+..|......
T Consensus 256 ~~~~~~~~~~r~~~~~~~~~~~~ 278 (308)
T d2onda1 256 DLASILKVEKRRFTAFREEYEGK 278 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTTSSC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999998771102201
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.4e-16 Score=129.58 Aligned_cols=216 Identities=8% Similarity=0.035 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999850299994459999999998199999999999999929999999999999999849919999999999973
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
+|+++|++|+.+.|+.+.+++.+|.++..+|++.+| |++++..+|....+....+..+ ...|..++..++...+.
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH---HHHHHHCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCC
T ss_conf 999999999871999799995199999997629999---9999874930199985799999--99999999999985616
Q ss_pred CCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999--36899889999998199899999999999739999999999999998712067599999999999985999899
Q 001509 192 HPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1065)
Q Consensus 192 ~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 269 (1065)
.... ........+.+....+.| ..++..+..++.++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y-------------------------------------~~ai~~l~~~~~l~~~~~- 120 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFY-------------------------------------TQLLQELCTVFNVDLPCR- 120 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHTC----------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHCCCHHHH-
T ss_conf 458437999999999999999999-------------------------------------999999999878991139-
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999999997299789999999998504789882589999999999729999999999999982089998433155299
Q 001509 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1065)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1065)
..+..+|..+...|++..|+..+..++.. ....+++.+|
T Consensus 121 ------------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG 159 (497)
T d1ya0a1 121 ------------------------------------VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLG 159 (497)
T ss_dssp ----------------------------------------------------------CCHHHHH-----HHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CHHHHHHHHH
T ss_conf ------------------------------------99998579987589999999999988278-----8999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99998099899999999999759996999999999999729999999999999970999499
Q 001509 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1065)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 411 (1065)
.++...+++++|+.+|.+++.+.|++..+++.+|.++...|++.+|+.+|.+++...|..+.
T Consensus 160 ~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~ 221 (497)
T d1ya0a1 160 DIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 99998024789999999999878996599999999999869999999999999817999789
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-15 Score=122.83 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 97299999999999999820899984331552999999809989999999999975999699999999999972999999
Q 001509 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1065)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1065)
...+.|..++..+..... ..+.....+..+|..+...|++..|+..+.+++...| ..++..+|.++...+++++|
T Consensus 97 ~a~~~Y~~ai~~l~~~~~---l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A 171 (497)
T d1ya0a1 97 AASGFYTQLLQELCTVFN---VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQA 171 (497)
T ss_dssp HHHHHHHHHHHHHTC----------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999999878---9911399999857998758999999999998827889--99999999999980247899
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 9999999970999499999999809989999999899999971998999999999970
Q 001509 396 QELLRKAAKIDPRDAQARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 453 (1065)
Q Consensus 396 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 453 (1065)
+.+|.+++.+.|++. ..++++|.++...|++.+|+.+|.+++.
T Consensus 172 ~~~y~~A~~l~P~~~---------------~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 172 ESYYRHAAQLVPSNG---------------QPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHCTTBS---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999998789965---------------9999999999986999999999999981
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=5.1e-12 Score=99.04 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----HH
Q ss_conf 58989998-04990889999999999824898-8863579999999999828999999999999987437996-----99
Q 001509 656 NGAGVVLA-EKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQ 728 (1065)
Q Consensus 656 ~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~ 728 (1065)
..+|.++. ..|++++|+..|+++++..+... .+....++.++|.+|..+|+|.+|+..|++++...+..+. ..
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99888676478789999889999999987337603334688999999998173999999999999868133245556999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999982019999999999998399982
Q 001509 729 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 761 (1065)
Q Consensus 729 ~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~ 761 (1065)
.+..++.++...|++..|...+.+++..+|...
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~ 233 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999984659999999999997597744
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.9e-11 Score=93.48 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=75.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999999981999999999999999299999999999999998499199999999999739999368998899999981
Q 001509 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1065)
Q Consensus 131 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1065)
+...|..++..|+|++|+..|.+++..+|+++.+|..+|.+++..|++.+|+..|.++++.+|.+ ..+++.+|.++..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHC
T ss_conf 99999999995899999998660211000113332456788874054212888899999875446-68779999999994
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9989999999999973999999999999999
Q 001509 211 GQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
|++++|+..|++++.++|++..++..++.+.
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999999989999872999799999999999
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.4e-11 Score=93.05 Aligned_cols=150 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999997002221366648999999999999850299994459999999998199999999999999929999
Q 001509 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1065)
Q Consensus 82 ~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1065)
.+-.+...|..+...|+.. .|+..|.+ +.|.++.+|+.+|.+++..|++++|+..|+++++.+|++
T Consensus 4 ~~~~l~~~g~~~~~~~d~~-----------~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~ 69 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWK-----------GALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 69 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----------HHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCHH-----------HHHHHHHH---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999877999-----------99999986---489889999999999998589146787899999985523
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999849919999999999973999936---------------89988999999819989999999999973
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1065)
+.++..+|.+++.+|+|.+|+..|++++...+.+.. .+++.+|.++..+|++++|+..|.+++.+
T Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 46678899999854249999999999998672673678998665436305889999999999978999999999999836
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 9999999999999998712
Q 001509 227 DPENVEALVALAVMDLQAN 245 (1065)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~ 245 (1065)
.|.........+......+
T Consensus 150 ~~~~~~~~~~~Al~~~~~~ 168 (192)
T d1hh8a_ 150 KSEPRHSKIDKAMECVWKQ 168 (192)
T ss_dssp CCSGGGGHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9980407999999999836
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.43 E-value=1.5e-09 Score=80.96 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Q ss_conf 44599999999981999999999999999299999999999999998----499199999999999
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRAL 189 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al 189 (1065)
|.+++.+|..++..+++.+|+.+|+++.+. .+..+++.+|.++.. ..++..|..++..+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~ 65 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 65 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
T ss_conf 899999999999877999999999999978--9999999999999809996056999987501222
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.43 E-value=2.5e-09 Score=79.38 Aligned_cols=10 Identities=30% Similarity=0.524 Sum_probs=3.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 001509 707 FALAMKMYQN 716 (1065)
Q Consensus 707 ~~~A~~~~~~ 716 (1065)
+..|+.+|.+
T Consensus 198 ~~~A~~~~~~ 207 (265)
T d1ouva_ 198 FKEALARYSK 207 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 3444546766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.4e-11 Score=91.56 Aligned_cols=113 Identities=16% Similarity=0.228 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999997002221366648999999999999850299994459999999998199999999999999929999
Q 001509 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1065)
Q Consensus 82 ~~~~l~~La~~y~~~g~~~~~~~~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1065)
++..+...|..|+..|+.. +|+.+|.+++.++|.++..|+.+|.+++..|++++|+..|.++++.+|.+
T Consensus 9 ~a~~l~~~gn~~~~~~~y~-----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~ 77 (159)
T d1a17a_ 9 RAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 77 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9999999999999958999-----------99998660211000113332456788874054212888899999875446
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999999849919999999999973999936899889999
Q 001509 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1065)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1065)
..++..+|.++...|++.+|+..|++++.+.|++ ..++..++.+
T Consensus 78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~ 121 (159)
T d1a17a_ 78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHH
T ss_conf 6877999999999499999999899998729997-9999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.7e-11 Score=93.69 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 59999999998199999999999999929999999999999999849919999999999973999936899889999998
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
-+...|..++..|++++|+..|.+++..+|.++.+|..+|.++...|++.+|+..|.+++..+|.+ +.+++.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCH-HHHHHHHHHHHHH
T ss_conf 999999999996999999999999886199601343000110110000112100134677740220-2677889999998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 19989999999999973999999999999999
Q 001509 210 LGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1065)
+|++++|+..|++++..+|+++.++..++.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 12799999999999984989899999999783
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=1e-11 Score=96.77 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 55999999999998528754699858989998049908899999999998248988863579999999999828999999
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 711 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 711 (1065)
|++++|+..|.+++..+|.++.+++++|.+|...|++++|+..|.+++...| +++.+|+++|.+|..+|++++|+
T Consensus 18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-----~~~~a~~~lg~~~~~l~~~~~A~ 92 (201)
T d2c2la1 18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----QSVKAHFFLGQCQLEMESYDEAI 92 (201)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999999999985999899998178987410000012478888887188-----73899999999999879999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999987
Q 001509 712 KMYQNCLRK 720 (1065)
Q Consensus 712 ~~~~~al~~ 720 (1065)
..|++++..
T Consensus 93 ~~~~~al~l 101 (201)
T d2c2la1 93 ANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.3e-10 Score=88.87 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999850299994459999999998199999999999999929999999999999999849919999999999973
Q 001509 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1065)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1065)
+|+..|++++..+|.++.+|..+|.++...|++++|+..|.+++..+|.++.+|+.+|.++...|++++|+..|++++..
T Consensus 21 eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 21 DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999886199601343000110110000112100134677740220267788999999812799999999999984
Q ss_pred CCCC
Q ss_conf 9999
Q 001509 192 HPSC 195 (1065)
Q Consensus 192 ~p~~ 195 (1065)
+|++
T Consensus 101 ~p~~ 104 (117)
T d1elwa_ 101 EANN 104 (117)
T ss_dssp CTTC
T ss_pred CCCC
T ss_conf 9898
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.9e-11 Score=94.79 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 44599999999981999999999999999299999999999999998499199999999999739999368998899999
Q 001509 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1065)
Q Consensus 128 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1065)
...+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+|...|+|++|+..|.+++.++|++ ..+++.+|.++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~ 82 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 99999999999986999999999999998599989999817898741000001247888888718873-89999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9819989999999999973999
Q 001509 208 YKLGQLGKARQAFQRALQLDPE 229 (1065)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~ 229 (1065)
..+|++++|+..|++++.++|.
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9879999999999999874955
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.2e-10 Score=83.31 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999999999982899999999999998743799699999999999982019999999999998399982047889998
Q 001509 693 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 693 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
++.++|.||+.+|++++|+..+++++.. +|.++.+++.+|.+++..|++++|...|++++.++|+++.+...++.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999988642110110000000100--223103467779999872229999999999997298989999999999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=8.8e-10 Score=82.69 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999849919999999999973999936899889999998199899999999999739999999999999
Q 001509 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1065)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1065)
+|.+++..|+|.+|+..+++++.++|++ ..+++.+|.|+..+|+++.|+..|++++.++|++..+...++.
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999886421101100000001002231-0346777999987222999999999999729898999999999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.17 E-value=4e-09 Score=77.87 Aligned_cols=57 Identities=12% Similarity=-0.013 Sum_probs=17.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999708959999999999988789299999999999980998899999999998779
Q 001509 511 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 567 (1065)
Q Consensus 511 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p 567 (1065)
+|..+|++.+|+..+..++..+|.++.+++++|.++...|++.+|+..|.+++.++|
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 987762201100022322201310488999889999882789999999999998598
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.16 E-value=2.4e-09 Score=79.54 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 999999982899999999999998743799699999999999982019999999999998399982047
Q 001509 696 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 696 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
|+|.+|+.+|++.+|+..+++++.. +|.++.+++.+|.++...|++++|+..|+++++++|++..+.
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 1999999846530111010001000--000012467768999996899999999999998298989999
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.15 E-value=6e-10 Score=83.92 Aligned_cols=27 Identities=7% Similarity=0.261 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHCC
Q ss_conf 999999982019999999999998399
Q 001509 732 YLARTHYEAEQWQDCKKSLLRAIHLAP 758 (1065)
Q Consensus 732 ~la~~~~~~g~~~~A~~~~~kal~~~P 758 (1065)
.+|.++...|++++|...|.+++.++|
T Consensus 103 ~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 103 RRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 889999882789999999999998598
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.14 E-value=1e-09 Score=82.23 Aligned_cols=84 Identities=23% Similarity=0.141 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99944599999999981999999999999999299999999999999998499199999999999739999368998899
Q 001509 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1065)
Q Consensus 125 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1065)
|.....+..+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++.++|++ ..+...++
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~ 152 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHH
T ss_conf 02399999899999864021013666554431000223677769999998047999999999999859899-99999999
Q ss_pred HHHHH
Q ss_conf 99998
Q 001509 205 LCRYK 209 (1065)
Q Consensus 205 ~~~~~ 209 (1065)
.+...
T Consensus 153 ~~~~~ 157 (169)
T d1ihga1 153 KVKQK 157 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.13 E-value=1.3e-09 Score=81.35 Aligned_cols=75 Identities=17% Similarity=0.021 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999999970895999999999998878929999999999998099889999999999877999589998614
Q 001509 504 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 578 (1065)
Q Consensus 504 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 578 (1065)
++.++|.+|..+|++.+|+..+.+++..+|.++.+|+++|.++...|++.+|+..|++++.++|++..+...+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 996199999984653011101000100000001246776899999689999999999999829898999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=1.7e-09 Score=80.63 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 59999999998199999999999999929999999999999999849919999999999973999936899889999998
Q 001509 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1065)
Q Consensus 130 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1065)
.++.+|..++..|++.+|+..|++++..+|+++.+|..+|.++...|++.+|+..|++++.++|++ ..+++.+|.++..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCHHHHHHHHHH
T ss_conf 999999999987605899998861011211110012335456410125877410000011111100-0003789999999
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 199899999999999
Q 001509 210 LGQLGKARQAFQRAL 224 (1065)
Q Consensus 210 ~g~~~~A~~~~~~al 224 (1065)
+|++++|+..|++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 789999999999981
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.2e-09 Score=81.64 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=38.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCC
Q ss_conf 9998199999999999999929999999999999999849---91999999999997399993-6899889999998199
Q 001509 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRYKLGQ 212 (1065)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~p~~~-~~~~~~la~~~~~~g~ 212 (1065)
.++..+++++|...|++++..+|.++.+++.+|.+++..+ ++.+|+..|++++...|... ..+++.+|.+|..+|+
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~ 87 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 87 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 73699999999999999883299989999999999998512678999999999998606993199999999999999731
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 89999999999973999999999999
Q 001509 213 LGKARQAFQRALQLDPENVEALVALA 238 (1065)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la 238 (1065)
+++|+.+|++++.++|++..+...++
T Consensus 88 ~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 88 YEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 69999999999976909899999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.02 E-value=2.4e-09 Score=79.52 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8999999999999850299994459999999998199----------999999999999929999999999999999
Q 001509 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEF 173 (1065)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1065)
.+.|++|+..|++++.++|+++.+++.+|.++...++ +++|+..|+++++++|+++.+++.+|.++.
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 73699999999999861883108999999999876213333677887888999999988730120587766899998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3e-09 Score=78.82 Aligned_cols=107 Identities=13% Similarity=0.113 Sum_probs=47.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 89998049908899999999998248988863579999999999828---999999999999987437996999999999
Q 001509 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLAR 735 (1065)
Q Consensus 659 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 735 (1065)
+..+...+++++|...|++++...| .++.+++++|+++...+ ++.+|+..|++++...+.+....+++.+|.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8873699999999999999883299-----98999999999999851267899999999999860699319999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99982019999999999998399982047889998
Q 001509 736 THYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 736 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
+|+..|++++|+.+|++++.+.|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99997316999999999997690989999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.3e-08 Score=74.24 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC------HHHHHHHHHH
Q ss_conf 9999999819999999999999992999999999999999984991999999999997399993------6899889999
Q 001509 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRLGIGLC 206 (1065)
Q Consensus 133 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~la~~ 206 (1065)
.+|..++..|+|++|+.+|.+++..+|.++.++..+|.+++..|+|.+|+..|.+++.++|... ..+++.+|.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998599999999999998849645899986889998818607789999999986801278898899999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9981998999999999997399
Q 001509 207 RYKLGQLGKARQAFQRALQLDP 228 (1065)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p 228 (1065)
+..++++++|+.+|.+++..++
T Consensus 89 ~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHCCHHHHHHHHHHHHHCCC
T ss_conf 9993889999999999984599
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.99 E-value=1.1e-08 Score=74.71 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99999999708959999999999988789299999999999980998899999999998779995899986145301665
Q 001509 506 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 585 (1065)
Q Consensus 506 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 585 (1065)
+.+|.++...|++.+|+..|++++..+|+++.+|..+|.++...|++.+|+.++++++.++|.++.++..+|.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred HHHHHHHHHH
Q ss_conf 3999999999
Q 001509 586 WVKAKETFRA 595 (1065)
Q Consensus 586 ~~~A~~~~~~ 595 (1065)
+.+|+..+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.98 E-value=5.2e-09 Score=77.05 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 55999999999998528754699858989998049----------90889999999999824898886357999999999
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 701 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~ 701 (1065)
+.+++|+..|++++..+|+++.+++++|.++...+ .+++|+..|+++++..| +++.+|+++|.+|
T Consensus 11 ~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-----~~~~a~~~lG~~y 85 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHH
T ss_conf 36999999999998618831089999999998762133336778878889999999887301-----2058776689999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 982899999999999998743799699999999999982019999999999998399982047889998
Q 001509 702 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 770 (1065)
Q Consensus 702 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~nla~~ 770 (1065)
..+|++. +......+.+.+|..+|++++.+.|++...+.+|+.+
T Consensus 86 ~~~g~~~-------------------------~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 86 TSFAFLT-------------------------PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHC-------------------------CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCCH-------------------------HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 8701011-------------------------3578898867876312110002598889999999999
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.4e-08 Score=72.16 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 5599999999999852875469985898999804990889999999999824
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
+++++|+.+|.+++.++|.++.++.++|.+|..+|++++|+..+.++++..|
T Consensus 18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~ 69 (128)
T d1elra_ 18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (128)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999999999884964589998688999881860778999999998680
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.76 E-value=1.7e-07 Score=65.99 Aligned_cols=107 Identities=9% Similarity=-0.027 Sum_probs=63.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----
Q ss_conf 89899980499088999999999982489888-------6357999999999982899999999999998743799----
Q 001509 657 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 725 (1065)
Q Consensus 657 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 725 (1065)
+.|..++..|++++|+..|+++++..|..... ....+|.++|.+|..+|++++|+..+++++..++...
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999998599999999999999868442010200121027999999999999828630015766435530431002455
Q ss_pred -----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf -----69999999999998201999999999999839998204
Q 001509 726 -----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 763 (1065)
Q Consensus 726 -----~~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 763 (1065)
...+++.+|.+|...|++++|+..|++++.+.|.....
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 4431127877526999998888888899999999866874230
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.6e-07 Score=66.19 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 3579999999999828999999999999987437996-----99999999999982019999999999998399982047
Q 001509 690 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 764 (1065)
Q Consensus 690 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 764 (1065)
.++.++.+|.+++.+|+|..|+.+|+++++..+.... ..++..+|.++++.|++++|+.++++++.+.|+++.+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 69999999999999779999999999999988653014764789999872688865773988878877988692979999
Q ss_pred HHHHHHHHH
Q ss_conf 889998569
Q 001509 765 FDAGVAMQK 773 (1065)
Q Consensus 765 ~nla~~~~~ 773 (1065)
.|++.+.+.
T Consensus 84 ~Nl~~~~~~ 92 (95)
T d1tjca_ 84 GNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.65 E-value=3.2e-08 Score=71.32 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 5599999999999852875469985898999804990889999999999824
Q 001509 632 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 683 (1065)
Q Consensus 632 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 683 (1065)
|++++|+..|+++++.+|.+..++..++.+++..|++++|+..|+.+++..|
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P 61 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 8999999999999997899999999999999987999999999999998699
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.59 E-value=5.5e-08 Score=69.56 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99899999999999759996999999999999729999999999999970999
Q 001509 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1065)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 408 (1065)
|++++|+..++++++.+|.+..++..++.++...|++++|+..|++++.++|+
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~ 62 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999978999999999999999879999999999999986997
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.42 E-value=1.3e-05 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=7.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999997199899999999997
Q 001509 431 IGVIHFEKGEFESAHQSFKDAL 452 (1065)
Q Consensus 431 la~~~~~~g~~~~A~~~~~~al 452 (1065)
.|......|++++|+..|.+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL 38 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAAL 38 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999998879999999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2.5e-06 Score=57.45 Aligned_cols=35 Identities=23% Similarity=0.013 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99999999970895999999999998878929999
Q 001509 505 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 539 (1065)
Q Consensus 505 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 539 (1065)
+.++|.++...|++++|+..|++++..+|++..++
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99872688865773988878877988692979999
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.69 E-value=0.00044 Score=41.01 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 579999999999828---999999999999987437996-999999999999820199999999999983999820478
Q 001509 691 PDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 765 (1065)
Q Consensus 691 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 765 (1065)
+.+.|+.||++.+.. +...++.+|+.+++. .+.+ ...+++||.+|++.|++++|..++.+++++.|++..+..
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 101999999998279688999999999999854--95059999999999999873299999999999823998499999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.66 E-value=0.0014 Score=37.35 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=3.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q 001509 707 FALAMKMYQNC 717 (1065)
Q Consensus 707 ~~~A~~~~~~a 717 (1065)
+.+|+.+|+++
T Consensus 75 ~~~A~~~~~~a 85 (133)
T d1klxa_ 75 LRKAAQYYSKA 85 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 57888887500
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.46 E-value=0.0025 Score=35.48 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHHHH
Q ss_conf 999999999998502999944599999999981999999999999999299999999999999998----4991999999
Q 001509 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (1065)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~ 184 (1065)
++.+|+.+|.++.... ++.+.+.++. ....++++|+..|.++... .++.+.+.+|.+|.. ..++..|+.+
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHCC--CCCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 9999999999999879--9154565410--1123899999987654113--31255556787533013531035788888
Q ss_pred HHHHHH
Q ss_conf 999997
Q 001509 185 YKRALQ 190 (1065)
Q Consensus 185 ~~~al~ 190 (1065)
|+++..
T Consensus 82 ~~~aa~ 87 (133)
T d1klxa_ 82 YSKACG 87 (133)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 750002
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.026 Score=28.05 Aligned_cols=122 Identities=8% Similarity=-0.030 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789999999998399789999998339972244323228989999999999999--700222136664899999999999
Q 001509 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYT--YLGKIETKQREKEEHFILATQYYN 118 (1065)
Q Consensus 41 ~~~~~~a~~y~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~l~~La~~y~--~~g~~~~~~~~k~~~~~~A~~~~~ 118 (1065)
...+..|...+++|++..+..+...+.+-..- ..+...++ ..+... ...+.
T Consensus 7 r~~y~~a~~a~~~~~~~~~~~~~~~L~dypL~--------------pYl~~~~l~~~~~~~~-------------~~~i~ 59 (450)
T d1qsaa1 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLY--------------PYLEYRQITDDLMNQP-------------AVTVT 59 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTH--------------HHHHHHHHHHTGGGCC-------------HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH--------------HHHHHHHHHHCCCCCC-------------HHHHH
T ss_conf 99999999999878989999998560479877--------------9999999873515699-------------99999
Q ss_pred HHHHCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9850299994459999---99999819999999999999992999999999999999984991999999999997399
Q 001509 119 KASRIDMHEPSTWVGK---GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1065)
Q Consensus 119 ~a~~~~p~~~~~~~~~---g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1065)
..+..+|+.|.....+ -..+...+++...+..+ ...|.+....+..+.+....|+...|...+..+-....
T Consensus 60 ~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 60 NFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 999878998227999999999987656889999766----68999999999999999875984889999999985478
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.027 Score=27.94 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=22.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8999804990889999999999824898886357999999999982899999999999
Q 001509 659 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 716 (1065)
Q Consensus 659 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 716 (1065)
+..+...|....|...+..+.... ++.-...++.+....|.++.||....+
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~-------~~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK-------SKTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999998699469999999998679-------999999999999987984699999999
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.17 E-value=0.23 Score=21.17 Aligned_cols=281 Identities=13% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 64899999999999985029999445999999999819999999999999992999999999999999984991999999
Q 001509 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1065)
Q Consensus 105 ~k~~~~~~A~~~~~~a~~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1065)
.+.+.|..|...|+..- -+-....++...+++..|...+.+. ++...|......+.......-+
T Consensus 25 ~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la--- 88 (336)
T d1b89a_ 25 YDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLA--- 88 (336)
T ss_dssp ----CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHH---
T ss_pred HHCCCHHHHHHHHHHCC--------CHHHHHHHHHHHCCHHHHHHHHHHC-----CCHHHHHHHHHHHHHCCHHHHH---
T ss_conf 87877999999998678--------9999999997031599999999880-----8899999999999727287899---
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999739999368998899999981998999999999997399999999999999987120675999999999999859
Q 001509 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1065)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 264 (1065)
.+........+.-...+...|...|.++..+..++.++...+.....+..++.++...
T Consensus 89 --~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~-------------------- 146 (336)
T d1b89a_ 89 --QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-------------------- 146 (336)
T ss_dssp --HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--------------------
T ss_pred --HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--------------------
T ss_conf --9999875357887899999998769859999999999757744467999999999986--------------------
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99899999999999972997899999999985047898825899999999997299999999999999820899984331
Q 001509 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1065)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1065)
++.-.......+...=+..++...+... ..|..+...|...|.++.|+...- ..+..+.-
T Consensus 147 --~~~kl~e~l~~~s~~y~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~~i-------~~~~~~~~ 206 (336)
T d1b89a_ 147 --KPQKMREHLELFWSRVNIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIITMM-------NHPTDAWK 206 (336)
T ss_dssp --CHHHHHHHHHHHSTTSCHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHHHH-------HSTTTTCC
T ss_pred --CHHHHHHHHHHCCCCCCHHHHHHHHHHC-----------CCHHHHHHHHHHCCCHHHHHHHHH-------HCCHHHHH
T ss_conf --9499999998602359999999998874-----------874999999985587999999999-------76544566
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 55299999980998999999999997599969999999999997299999999999999709994999999998099899
Q 001509 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQARTLLKKAGEEVP 424 (1065)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 424 (1065)
....-.++.+..+.+.........+..+|... ..+-......-+..+.+..+++ ...-+.....+........
T Consensus 207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i---~~lL~~v~~~~d~~r~V~~~~k----~~~l~li~p~Le~v~~~n~ 279 (336)
T d1b89a_ 207 EGQFKDIITKVANVELYYRAIQFYLEFKPLLL---NDLLMVLSPRLDHTRAVNYFSK----VKQLPLVKPYLRSVQNHNN 279 (336)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGH---HHHHHHHGGGCCHHHHHHHHHH----TTCTTTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHH---HHHHHHHCCCCCHHHHHHHHHH----CCCCHHHHHHHHHHHHCCH
T ss_conf 99999999724786999999999997599999---9999985657998999999985----3880779999999998180
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999899999971998999999999
Q 001509 425 IEVLNNIGVIHFEKGEFESAHQSFKD 450 (1065)
Q Consensus 425 ~~~~~~la~~~~~~g~~~~A~~~~~~ 450 (1065)
..+...++.+|...++++.-......
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998671246789999987
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