Citrus Sinensis ID: 001514

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060---
MRLSSGEDRVAAHGGGGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRATTKTSAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTARADS
ccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHcccccccc
ccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccEEEEEccccccccccEEEccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHccccccHcEEcccccccccccccccHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccEccHHHHHHHHccccccccHccHccccccccccc
mrlssgedrvaahggggggygdaeslfrtkpiseirnvELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSlsaetattpklanpnpnrlkiYGIACRVKylvdtpeniwgcldesmFLEAATRYVRAKHVQYILLDVnkevdhlnfpllqhQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTlggnanftssDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVIlasppasqlfggipnpdEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVfgseielpWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSiqviggdnygeLVDFQaylnrpstgggvwfiepnstvKKAGVVlghkalpedndfqNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSflespkaplrlkdlapylqnKCYESMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFqnhskhipvilgsprfwaKETVAAVFDKLSpllrqsrvatdssmadspgkqiptgsrrqtSAATAALLgtnesespklkelTRTTRDLCIRAHSLWITWLSDELSFILSRdlgkddglsattslrGWEETVVKQEqsdesqsemkislpsmpslYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSadvlsggdsnrnessknskakfsfrrkqdqsqtkSHMREHVDGLINRFsqrldpidwltyepylreneKQAYVRHAVLFGFFVQLNRMYTdtvqklptnsesnimrcstvprfkylpisapalssrattktsapilldeissratwkaytngelsgninlddnssfgvatPFLKSFMQVGsrfgestlklgsmltdgqvgifkdrsasamstfgDILPAQAAGLLSSFTTARADS
mrlssgedrvaahggggggygdaeSLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETattpklanpnpnrlKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIesgtesvptAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSrvatdssmadspgkqiptgsrrqTSAATAallgtnesespklkelTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSattslrgweetvvkqeqsdesqsemkislpsmpSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADvlsggdsnrnessknskakfsfrrkqdqsqtkshmrehVDGLinrfsqrldpiDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVqklptnsesnimRCSTVPRFKYLPISapalssrattktsapilldeissraTWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTARADS
MRLSSGEDRVAAHggggggygDAESLFRTKPISEIRNVelttkkqiqqkqeelrqlVGTRYRDLIDSADSIVLMKsscesissnissihshilslslsAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQayadalaavaVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRATTKTSAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTARADS
******************************************************QLVGTRYRDLIDSADSIVLMKSSCESI**NISSIHSHILSL*****************NRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPL**************************************************RTTRDLCIRAHSLWITWLSDELSFILSRDLGKD*************************************SLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADV*************************************VDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPA**********APILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDR***AMSTFGDILPAQAA*************
********************GDAESLFRTKPISEIRNVEL*********QEELRQLVGTRYRDLIDSADSIVLMKSSCESI**NI********************************YGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQ***************PLLQHQCQIVESFKVQISQRGRER********QAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLND********************IPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNV********************YLNRPSTGGGVW*******************************AYFGLEVSRIRDAVDSCCQNVLEDLLSFL*********KDLAPYLQNKCYESMSTILMELKRELDNL***************IVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVA*********************************SESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWE*******************LPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRN***************GVLQVLFDLRFSADVLSG********************************EHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFV*************************TVPRFKYLP***********************************************************MQ***RFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFT*A****
****************GGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQS**************************ATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWE*****************ISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSG********************************EHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPAL********SAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTARADS
********************GDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSL**************PNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVATD*******************************SESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGG*************************TKSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNR*****************MRCSTVPRFKYLPISAP**********************************************V**PF***FMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAG************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLSSGEDRVAAHGGGGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKDLAPYLQNKCxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRATTKTSAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTARADS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1063 2.2.26 [Sep-21-2011]
Q9Z160980 Conserved oligomeric Golg yes no 0.799 0.867 0.245 5e-55
Q8WTW3980 Conserved oligomeric Golg yes no 0.789 0.856 0.230 7e-46
Q54ZB3 1449 Conserved oligomeric Golg yes no 0.207 0.152 0.246 2e-13
Q9VGC3886 Conserved oligomeric Golg yes no 0.206 0.248 0.272 3e-12
A6QQ47781 Vacuolar protein sorting- no no 0.178 0.243 0.208 0.0006
>sp|Q9Z160|COG1_MOUSE Conserved oligomeric Golgi complex subunit 1 OS=Mus musculus GN=Cog1 PE=2 SV=3 Back     alignment and function desciption
 Score =  217 bits (552), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 245/1000 (24%), Positives = 424/1000 (42%), Gaps = 150/1000 (15%)

Query: 22  DAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESI 81
           D  +LF T    EIR +E   + +I+ K+EELRQ+VG RYRDLI++AD+I  M+   E +
Sbjct: 17  DPNALFETHGAEEIRGLERQVRAEIEHKKEELRQMVGERYRDLIEAADTIGQMRRCAEGL 76

Query: 82  SSNISSIHSHILSLSLSAETAT-TPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDE 140
              + +   +   L  +   A   P+   P P   K Y +A ++K L++ PE IW  ++ 
Sbjct: 77  VDAVQATDQYCARLRQAGSVAPRVPRAPQPQPPSEKFYSMAAQIKLLLEIPEKIWSAMEA 136

Query: 141 SMFLEAATRYVRAKHVQYI--LLDVNKEVDHL--NFPLLQHQCQIVESFKVQISQRGRER 196
           S  L+A   Y+   H+  +  L   N     +   FP+L  Q      F+  I    +  
Sbjct: 137 SQHLQATQLYLLCCHLHSLLQLDSSNSRYSPILSRFPILIRQVAAASHFRSTILHESKML 196

Query: 197 LLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVF 256
           L    +  QA A+AL ++ +++E  P Q L  FL  RK  I QTL  N +   + + +  
Sbjct: 197 LKCQAVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATI-QTL-LNQSHHGAGIKAQI 254

Query: 257 CQVMKVIQITVAQVGELFLQ----VLNDMPLFYKVILAS-------PPASQLFGGIPNPD 305
           C +++++  T+ Q   LF      VL D  L   ++ ++        P  +  G +    
Sbjct: 255 CSLVELLATTLNQAHALFYTLPEGVLPDPSLPCGLLFSTLETVTRQHPTGKGIGALQG-- 312

Query: 306 EEVRLWKLFRD----------KLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFLI 355
            E++L   FR            L ++   + ++Y+  T   W+  C  +I N I    L+
Sbjct: 313 -EMKLCSWFRHLPTSIIEFQPTLRTLAHPISQEYLKDTLQKWIDMCNEDIKNGIGN--LL 369

Query: 356 DTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLW 415
             + + K  GLA   IR+ +          D L +   S     W  + + +L+     W
Sbjct: 370 MYVKSMK--GLA--GIRDAI---------WDLLSNESASH---SWEVVCQRLLEKPLLFW 413

Query: 416 DEIFEDAFVQRMKMIIDSGFEDLSRVVN--VANSIQVIGGDN--YGELVDFQAYLNRPST 471
           +++ +  F+ R++ +   GFE +S      + +++Q +  +N    + V F+  ++    
Sbjct: 414 EDLMQQLFLDRLQTLTREGFESISNSSKELLVSALQELETNNSTSNKHVHFEQNMS---- 469

Query: 472 GGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLN-AYFGLE-VSRIRDAVDSCCQNV- 528
              +W   PN              LP D  + +  N A F    +S    A+  C QN  
Sbjct: 470 -FFLWSESPND-------------LPSDAAWVSVANRAQFASSGLSMKAQAISPCVQNFC 515

Query: 529 ----------LEDLLSFLESPKAPLRLKDLAPYLQNKC-----YESMSTILMELKRE--- 570
                     L+DLL++L S   PL LKD  P  Q K      Y    T+   L+ +   
Sbjct: 516 SALDSKLKVKLDDLLAYLPSSDTPL-LKDTTPTHQPKNSAFDRYADAGTVQDMLRTQSVA 574

Query: 571 -LDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAV 629
            + ++   I++   ++      ++ +           HS  +  +L    F A+  +   
Sbjct: 575 CIKSVVGCIQAELCTIEEVTREQKDVL----------HSTKLHAVL----FMAR--LCQS 618

Query: 630 FDKLSPLLRQSRVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTT 689
             +L P L+Q  V      ++ P ++     ++    A   L    + +  K   L ++ 
Sbjct: 619 LGELCPHLKQC-VVGQCGGSEKPAREARALKKQGKGRAQDVLPAQAQWQGVKEVLLQQS- 676

Query: 690 RDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMK 749
               + A+ +W T L   L    +R L   D  S   +   W+E  +++E    S    K
Sbjct: 677 ----VMAYRVWSTALVKFLICGFTRSLLLRDAGSVLATATNWDELEIQEETESGSSVTSK 732

Query: 750 ISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAH 809
           I LP+ PS Y+ SFL   C+E++R+GGH L K  LQ+     + +VI  Y          
Sbjct: 733 IRLPTQPSWYVQSFLFSLCQEVNRVGGHALPKVTLQEMLKTCMAQVIAAYEQL-----TE 787

Query: 810 ESQVSEKG--------VLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQT 861
           E+Q+ ++G         LQ+L+DLR+   VL    S++ E  K+ ++K   R ++     
Sbjct: 788 ENQIKKEGAFPMTQNRALQLLYDLRYLTMVL----SSKGEEVKSGRSKADSRMEK----- 838

Query: 862 KSHMREHVDGLINRFSQRLDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTV 921
              M E ++ LI       DP D   + P+L  N  +   R +VLFG        +    
Sbjct: 839 ---MTERLEALI-------DPFDLDVFTPHLNSNLNRLVQRTSVLFGLVTGTENQFASRS 888

Query: 922 QKLPTNSESNIMR-CSTVPRFKYLPISAPAL-SSRATTKT 959
               +    NI+   S+  RF  LP+S  +   +RAT+++
Sbjct: 889 STFNSQEPHNILPLASSQIRFGLLPLSMTSTRKARATSRS 928
Required for normal Golgi function.
Mus musculus (taxid: 10090)
>sp|Q8WTW3|COG1_HUMAN Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens GN=COG1 PE=1 SV=1 Back     alignment and function description
>sp|Q54ZB3|COG1_DICDI Conserved oligomeric Golgi complex subunit 1 OS=Dictyostelium discoideum GN=cog1 PE=3 SV=1 Back     alignment and function description
>sp|Q9VGC3|COG1_DROME Conserved oligomeric Golgi complex subunit 1 OS=Drosophila melanogaster GN=CG4848 PE=1 SV=1 Back     alignment and function description
>sp|A6QQ47|VPS51_BOVIN Vacuolar protein sorting-associated protein 51 homolog OS=Bos taurus GN=VPS51 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1063
2240988081071 predicted protein [Populus trichocarpa] 0.989 0.982 0.755 0.0
2555474201065 conserved hypothetical protein [Ricinus 0.993 0.991 0.745 0.0
3594964841067 PREDICTED: conserved oligomeric Golgi co 0.983 0.979 0.739 0.0
2978076611067 hypothetical protein ARALYDRAFT_488483 [ 0.983 0.979 0.689 0.0
152373221068 Vps51/Vps67 family (components of vesicu 0.985 0.981 0.682 0.0
4494703661057 PREDICTED: conserved oligomeric Golgi co 0.976 0.982 0.699 0.0
4495075471057 PREDICTED: conserved oligomeric Golgi co 0.976 0.982 0.698 0.0
3565746591059 PREDICTED: conserved oligomeric Golgi co 0.969 0.973 0.697 0.0
425733831034 Vps51/Vps67 family (components of vesicu 0.953 0.980 0.663 0.0
3565339011059 PREDICTED: conserved oligomeric Golgi co 0.969 0.973 0.684 0.0
>gi|224098808|ref|XP_002311274.1| predicted protein [Populus trichocarpa] gi|222851094|gb|EEE88641.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1596 bits (4133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 811/1073 (75%), Positives = 908/1073 (84%), Gaps = 21/1073 (1%)

Query: 4    SSGEDRVAAHGGGGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRD 63
            S+ +DR A   GGG  Y DAESL R+K ISEIRNVE  T++QI++K+EELRQLVG RYRD
Sbjct: 7    SATDDRAATLSGGG--YRDAESLLRSKTISEIRNVESATRQQIEEKKEELRQLVGNRYRD 64

Query: 64   LIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACR 123
            LIDSADSIVLMKS C SIS NI+SIH  I SLS S   + TPK  NP+  R KIYGIACR
Sbjct: 65   LIDSADSIVLMKSYCGSISHNIASIHISIRSLSASP-LSETPKFTNPSSTRGKIYGIACR 123

Query: 124  VKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILL--DVNKEVDHLNFPLLQHQCQI 181
            VKYLVDTPENIWGCLDE MFLEAA RY RAKHVQ  L+  D NK +   NFPLLQHQ QI
Sbjct: 124  VKYLVDTPENIWGCLDEFMFLEAAGRYTRAKHVQNTLMSSDYNKILS--NFPLLQHQWQI 181

Query: 182  VESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTL 241
            VES KVQISQ+ RERL D GLGI  YADALAA AVIDEL+P+QVLGLFL++RK+WI Q L
Sbjct: 182  VESLKVQISQKSRERLSDQGLGIGGYADALAAAAVIDELEPDQVLGLFLDSRKSWISQKL 241

Query: 242  GG-------NANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPA 294
            GG       N N +   VV VFC+V+K+IQ++V QVGELFLQVLNDMPLFYKVIL SPPA
Sbjct: 242  GGFGWVDVKNDNVSGEVVVFVFCEVLKIIQVSVGQVGELFLQVLNDMPLFYKVILGSPPA 301

Query: 295  SQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEIVNKINGKFL 354
            SQLFGGIPNPDEEVRLWKLFR+KLESV V LDK+YIA+TC SWLR+CGGEIV+KING+FL
Sbjct: 302  SQLFGGIPNPDEEVRLWKLFREKLESVNVALDKEYIARTCLSWLRDCGGEIVSKINGRFL 361

Query: 355  IDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDL 414
            ID I TG EL +AEK IRETM SKQVLEGSLDWLKSVFGSEIELPWSRIREL+L+ DSDL
Sbjct: 362  IDAIATGGELAVAEKMIRETMGSKQVLEGSLDWLKSVFGSEIELPWSRIRELVLEDDSDL 421

Query: 415  WDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGG 474
            WDEIFE AFVQRMK II S FEDL R +N+  SI  +  +  GE +DFQAYLNRP TGGG
Sbjct: 422  WDEIFEGAFVQRMKTIITSRFEDLVRGINLGESICAVR-ETPGEPIDFQAYLNRPCTGGG 480

Query: 475  VWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLS 534
            VWFIEPN+  KK+G+  GHK  PE+NDF +CLNA+FG EVSRIRDAVDSCCQ+VLEDLLS
Sbjct: 481  VWFIEPNA--KKSGLGSGHKVSPEENDFHSCLNAFFGPEVSRIRDAVDSCCQSVLEDLLS 538

Query: 535  FLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIESGT---ESVPTAIIV 591
            FLESPKA LRL DLAP+LQ+KCYES+STIL ELKRELD+LYA + +     +SV  A++V
Sbjct: 539  FLESPKAALRLNDLAPFLQDKCYESISTILTELKRELDSLYATMGNANNVGQSVSPAMVV 598

Query: 592  ERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVATDSSMADS 651
            ++SL+IGRLLFAFQNHSKHIPVILGSPRFWA++T+AAVFDKL  +LRQSRVA+D  + DS
Sbjct: 599  DKSLYIGRLLFAFQNHSKHIPVILGSPRFWAEDTMAAVFDKLPSVLRQSRVASDYPIPDS 658

Query: 652  PGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFI 711
            PG+Q PTGS+RQTS+A +ALLG NES SPKL+EL RT RDLCIRAH LWI+WLSDELS I
Sbjct: 659  PGRQFPTGSKRQTSSAASALLGANESASPKLEELGRTMRDLCIRAHILWISWLSDELSTI 718

Query: 712  LSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEI 771
            L+ DLGKDDGLSATT LRGWEETVVKQEQSDE+Q E+KISLPS+PSLYIISFL RACEEI
Sbjct: 719  LALDLGKDDGLSATTPLRGWEETVVKQEQSDENQPEIKISLPSIPSLYIISFLFRACEEI 778

Query: 772  HRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADV 831
            HRIGGHVLDKSILQKF+SRLLEKVI IY +FLS+ E+H+SQVSEKGVLQ+L DLRF+ADV
Sbjct: 779  HRIGGHVLDKSILQKFASRLLEKVIEIYEDFLSSSESHQSQVSEKGVLQILLDLRFAADV 838

Query: 832  LSGGDSNRNES-SKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPIDWLTYEP 890
            LSGGD N NE  S+N + K  FRRKQ+QS  KS  RE +DGLIN FSQRLDPIDWLTYEP
Sbjct: 839  LSGGDCNINEEISRNPRVKIPFRRKQEQSHKKSAFRERIDGLINCFSQRLDPIDWLTYEP 898

Query: 891  YLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPA 950
            YL ENE+Q+Y+RHAVL GFFVQLNRMY DT+QKLP+N ESNIMRC TVPRFKYLPIS PA
Sbjct: 899  YLWENERQSYLRHAVLLGFFVQLNRMYIDTMQKLPSNPESNIMRCCTVPRFKYLPISTPA 958

Query: 951  LSSRATTKTSAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFMQVGSR 1010
            LSSR TTKTS     D+ISSR++WKAYTN ELS NI+LD+NSSFGVATP LKSFMQVGSR
Sbjct: 959  LSSRGTTKTSFQATSDDISSRSSWKAYTNEELSRNIDLDENSSFGVATPILKSFMQVGSR 1018

Query: 1011 FGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTARADS 1063
            FGESTLKLGSMLTDGQVGIFKDRSA+AMSTFGDILP QAAGLLSSFT  R+DS
Sbjct: 1019 FGESTLKLGSMLTDGQVGIFKDRSAAAMSTFGDILPVQAAGLLSSFTATRSDS 1071

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547420|ref|XP_002514767.1| conserved hypothetical protein [Ricinus communis] gi|223545818|gb|EEF47321.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359496484|ref|XP_002265872.2| PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807661|ref|XP_002871714.1| hypothetical protein ARALYDRAFT_488483 [Arabidopsis lyrata subsp. lyrata] gi|297317551|gb|EFH47973.1| hypothetical protein ARALYDRAFT_488483 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237322|ref|NP_197134.1| Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana] gi|9759112|dbj|BAB09597.1| low density lipoprotein B-like protein [Arabidopsis thaliana] gi|332004891|gb|AED92274.1| Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449470366|ref|XP_004152888.1| PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449507547|ref|XP_004163062.1| PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356574659|ref|XP_003555463.1| PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|42573383|ref|NP_974788.1| Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana] gi|332004892|gb|AED92275.1| Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356533901|ref|XP_003535496.1| PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1063
TAIR|locus:21713021068 AT5G16300 "AT5G16300" [Arabido 0.985 0.981 0.646 0.0
MGI|MGI:1333873980 Cog1 "component of oligomeric 0.749 0.813 0.230 1.6e-35
RGD|1304594980 Cog1 "component of oligomeric 0.744 0.807 0.227 1.5e-34
UNIPROTKB|Q8WTW3980 COG1 "Conserved oligomeric Gol 0.730 0.791 0.223 3.7e-32
UNIPROTKB|F1RV32981 COG1 "Uncharacterized protein" 0.729 0.790 0.223 9.5e-31
UNIPROTKB|E1BK29979 COG1 "Uncharacterized protein" 0.730 0.792 0.220 1.2e-30
UNIPROTKB|F1NT42952 COG1 "Uncharacterized protein" 0.266 0.297 0.230 7.2e-25
DICTYBASE|DDB_G02776911449 cog1 "oligomeric Golgi complex 0.142 0.104 0.222 5.3e-07
TAIR|locus:2171302 AT5G16300 "AT5G16300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3437 (1214.9 bits), Expect = 0., P = 0.
 Identities = 700/1082 (64%), Positives = 830/1082 (76%)

Query:     1 MRLSS---GEDRVAAHXXXXXXXX--DAESLFRTKPISEIRNVXXXXXXXXXXXXXXXXX 55
             MR+SS   GE R +A           DAESLFRTKP+SEIR V                 
Sbjct:     1 MRMSSASAGEYRPSAVSLSSNGGGQRDAESLFRTKPMSEIRIVESATRKNIEDKKEELRQ 60

Query:    56 XVGTRYRDLIDSADSIVLMKXXXXXXXXXXXXXXXXXXXXXXXAETATTPKLANPNPNRL 115
              VGTRYRDLIDSADSIV MK                       +  A TPKLA+ NP R+
Sbjct:    61 LVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNIRSLSSSS-VAETPKLASLNPVRV 119

Query:   116 KIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVN------KEVDH 169
              +YGIACRVKYLVDTPENIWGCLDESMFLEAA RY+RA+HVQ  L+ +        EVD 
Sbjct:   120 NVYGIACRVKYLVDTPENIWGCLDESMFLEAAGRYMRAQHVQQRLIKLEGCGGGVAEVDQ 179

Query:   170 ----LNFPLLQHQCQIVESFKVQISQRGRERLLDNGLGIQXXXXXXXXXXVIDELDPEQV 225
                  NFPLL+HQ QIVESFK QISQR  ERLLD GLG+           V+DELDPEQV
Sbjct:   180 SKLLANFPLLEHQWQIVESFKAQISQRSHERLLDPGLGLGAYVDALTAVAVVDELDPEQV 239

Query:   226 LGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFY 285
             L LFL++RKTWILQ L       + +VV VFC V+ VIQ+TV QVGELFLQ L DMPLFY
Sbjct:   240 LELFLDSRKTWILQKLNACTGEDAGEVVLVFCDVLSVIQVTVGQVGELFLQALTDMPLFY 299

Query:   286 KVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSWLRECGGEI 345
             K IL++PPASQLFGGIPNP+EEV LWK FRDKLESVM+ILDK+ ++K+C +WLRECGG+I
Sbjct:   300 KTILSTPPASQLFGGIPNPEEEVELWKSFRDKLESVMLILDKNDVSKSCLTWLRECGGQI 359

Query:   346 VNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRE 405
             V K++GK LI+ I TG ELG AEK IRETMDSK VL GSLDWLKSVFGSE+ELPW+RIRE
Sbjct:   360 VGKVSGKHLIEAIVTGAELGSAEKLIRETMDSKDVLRGSLDWLKSVFGSEVELPWNRIRE 419

Query:   406 LILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAY 465
             L+L  D +LWDEIFE AFV+RMK IIDS FE+L++ VNVA+S+     +  GE ++FQAY
Sbjct:   420 LVLGDDLNLWDEIFEKAFVERMKSIIDSKFENLTKAVNVADSVHAYS-EITGEKINFQAY 478

Query:   466 LNRPSTGGGVWFIEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCC 525
             LNRPSTGGGVWFIEPNS  KK G++ G+K+ PE++DFQ+CL AYFG EVS++RDAVD  C
Sbjct:   479 LNRPSTGGGVWFIEPNS--KKVGLISGNKSSPEESDFQSCLTAYFGPEVSQMRDAVDRRC 536

Query:   526 QNVLEDLLSFLESPKAPLRLKDLAPYLQNKCYESMSTILMELKRELDNLYAAIES---GT 582
              +VLEDLLSF ES KA  RLKDLAPY+QNKCY+S+S +L ++ +EL+ L AA++     +
Sbjct:   537 HSVLEDLLSFFESEKAGPRLKDLAPYVQNKCYDSVSALLADVDKELEFLCAAVKKENKDS 596

Query:   583 ESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRV 642
             E++P AII+E+SLF+GRLLFA  NHSKH+P+ILGSPR W +ET+ AV DKLS LLRQ R 
Sbjct:   597 EAIPPAIIIEKSLFMGRLLFALLNHSKHVPLILGSPRLWCRETMTAVSDKLSSLLRQPRF 656

Query:   643 ATDS-SMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWI 701
             ++++ + ADSPGKQ+ T  R+QTS A AALLG  E  SPK +EL RT RDLCI+AH+LWI
Sbjct:   657 SSNTPATADSPGKQLHTDLRKQTSLAVAALLGAEEKTSPKFEELNRTMRDLCIKAHTLWI 716

Query:   702 TWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYII 761
              WLSDELS IL RDL  DDGLSATT LRGWEET+VKQEQ DESQSE+KISLPS+PSLY+I
Sbjct:   717 KWLSDELSAILLRDLRSDDGLSATTPLRGWEETIVKQEQ-DESQSELKISLPSLPSLYMI 775

Query:   762 SFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQV 821
             SFLCRA EEIHRIGGHVLD+SILQKF+S LLEK+  IY +FLS  EA E Q+SEKGVLQ+
Sbjct:   776 SFLCRASEEIHRIGGHVLDRSILQKFASSLLEKITIIYEDFLSAREASEPQISEKGVLQI 835

Query:   822 LFDLRFSADVLSGGDSNRN-ESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRL 880
             L DLRF+ADVLSGGD++ N E+ K++  + ++RR+QDQ +TK   R  +DG+ ++ +Q+L
Sbjct:   836 LLDLRFAADVLSGGDTSTNVETPKSTINRSAYRRRQDQQKTKLVNRGRIDGVTSQLTQKL 895

Query:   881 DPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPR 940
             DPIDWLTYEPYL ENEKQ+Y+RHAVLFGFFVQLNRMYTDT QKL  N ESNIM CSTVPR
Sbjct:   896 DPIDWLTYEPYLWENEKQSYLRHAVLFGFFVQLNRMYTDTAQKLSINIESNIMPCSTVPR 955

Query:   941 FKYLPISAPALSSRATTKTSAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPF 1000
             FKYLPISAPALSSR+T K S P+  ++ S+R +WKA+TNGE S   +L++NS+FGVA   
Sbjct:   956 FKYLPISAPALSSRSTNKVSIPVTSNDASARNSWKAFTNGEQSQTSDLEENSNFGVA--- 1012

Query:  1001 LKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSASAMSTFGDILPAQAAGLLSSFTTAR 1060
              KSFMQ      ESTLKLGS+LTDGQVGIFKDRSA+AMSTFGDILPAQAAGLLSSFT  R
Sbjct:  1013 FKSFMQ------ESTLKLGSILTDGQVGIFKDRSAAAMSTFGDILPAQAAGLLSSFTNTR 1066

Query:  1061 AD 1062
             ++
Sbjct:  1067 SE 1068
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
MGI|MGI:1333873 Cog1 "component of oligomeric golgi complex 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304594 Cog1 "component of oligomeric golgi complex 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WTW3 COG1 "Conserved oligomeric Golgi complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RV32 COG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BK29 COG1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NT42 COG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277691 cog1 "oligomeric Golgi complex component" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1063
pfam0870087 pfam08700, Vps51, Vps51/Vps67 6e-17
>gnl|CDD|219977 pfam08700, Vps51, Vps51/Vps67 Back     alignment and domain information 
 Score = 76.6 bits (189), Expect = 6e-17
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 22 DAESLFR----TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSS 77
          DA+  F        + E+R +E   + +I++ QEELRQLV   YRDLI +AD+I  MKS 
Sbjct: 7  DADRYFSELLSKATLEELRQIEKKLRAEIEELQEELRQLVYENYRDLIKAADTISKMKSE 66

Query: 78 CESISSNISSIHSHILSLS 96
           ES+S  +S +   +  LS
Sbjct: 67 MESLSQKLSELKQALEKLS 85

This family includes a presumed domain found in a number of components of vesicular transport. The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1. Cog1_N is the N-terminus of the Cog1 subunit of the eight-unit Conserved Oligomeric Golgi (COG) complex that participates in retrograde vesicular transport and is required to maintain normal Golgi structure and function. The subunits are located in two lobes and Cog1 serves to bind the two lobes together probably via the highly conserved N-terminal domain of approximately 85 residues. Length = 87

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1063
KOG2033863 consensus Low density lipoprotein B-like protein [ 100.0
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 99.3
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 97.23
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 97.01
PF15469182 Sec5: Exocyst complex component Sec5 96.92
PF10475291 DUF2450: Protein of unknown function N-terminal do 95.15
KOG2180793 consensus Late Golgi protein sorting complex, subu 94.08
KOG2069581 consensus Golgi transport complex subunit [Intrace 92.98
PF12022125 DUF3510: Domain of unknown function (DUF3510); Int 92.24
KOG2346636 consensus Uncharacterized conserved protein [Funct 89.42
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 83.77
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-162  Score=1377.58  Aligned_cols=842  Identities=30%  Similarity=0.416  Sum_probs=735.2

Q ss_pred             CCCCCCCHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 001514           16 GGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSL   95 (1063)
Q Consensus        16 ~~~~~~~~d~LF~~~ti~EIr~Iek~lr~eIe~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~V~~~l~~m~~~c~~l   95 (1063)
                      ++++.+|+|.||++|+++|||.||+++|.+||+||||||+|||+||||||+|||||++|+++++.+.+++..++.+|+++
T Consensus         3 ~~l~~rDvd~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL   82 (863)
T KOG2033|consen    3 ANLLNRDVDTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSL   82 (863)
T ss_pred             CcccccCHHHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhh---ccccccccccc
Q 001514           96 SLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILL---DVNKEVDHLNF  172 (1063)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~---~~~~~~~l~~f  172 (1063)
                      ..+. ++.+|+..+.+|..+++|++|||||||+++||.||++||++++++|+.+|++++||++.|.   ..+.+  +++|
T Consensus        83 ~a~s-vA~tp~raeqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~l--l~nf  159 (863)
T KOG2033|consen   83 HANS-VAKTPGRAEQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSML--LKNF  159 (863)
T ss_pred             cccc-ccCCcchhhcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHH--Hhhc
Confidence            8554 3456666777788899999999999999999999999999999999999999999999554   34567  8999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchH
Q 001514          173 PLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDV  252 (1063)
Q Consensus       173 Pil~~Qw~~l~~fr~~Il~~~~~~L~~~~~s~~~~~~aLaAl~Lldsss~~d~L~~FL~~R~~ai~~~L~~~~~~~~~~~  252 (1063)
                      |++.+||.++++||.+|.+++...|.+.+++.++++|||||++|+|+++|+|+|..||+.|+.+|.++|+. ..+.++.+
T Consensus       160 P~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~-~p~~~~~v  238 (863)
T KOG2033|consen  160 PALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND-GPSEPRRV  238 (863)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc-CCCccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997 45556889


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhcccCCCchhHHHhhcCCccccccCCCCCChHHHHhhhhhhHhhhhhh--------cC
Q 001514          253 VSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVM--------VI  324 (1063)
Q Consensus       253 ~~vi~~~v~li~~TL~~V~aLF~~~l~~~pll~~~~l~~~~~~qlf~gi~~~~~e~~~w~~frp~l~~~~--------~~  324 (1063)
                      +++||.+|.++++|+.||++||++.    +|+|+++...++...   -++.+++|++.|++|+..+++.|        .+
T Consensus       239 ka~il~~v~vl~~Tl~qv~elfl~~----~Llfstle~c~gq~~---~~~i~emE~~l~~sf~~lpesim~f~pr~lv~k  311 (863)
T KOG2033|consen  239 KATILNIVDVLKKTLAQVEELFLHG----ELLFSTLEVCNGQYK---CELIREMEADLAYSFEKLPESIMDFVPRHLVEK  311 (863)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHhcCCccC---CCCchHHHHHHHHHHHhhHHHHhhccchhcccc
Confidence            9999999999999999999999986    899999877666543   36678999999999998766633        47


Q ss_pred             CCHHHHHHHHHHHHHHhh-hhhhhccccchhhhhccchhhHHHHHHHHHHhhhhhhhhcchhhhhhhccCCccCCChHHH
Q 001514          325 LDKDYIAKTCFSWLRECG-GEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRI  403 (1063)
Q Consensus       325 Ls~e~i~~~l~~Wl~~~~-e~I~~~i~g~~LL~~V~S~k~La~ir~~v~~~l~~~~~~~~sl~wl~~~f~~~~~~~W~~i  403 (1063)
                      |+++++++.+++|+.+|+ ..|.+++.  .++.+|.++|++.++.+.++.                   +...+.+|.++
T Consensus       312 ls~e~Lg~~lqQwvgk~n~a~i~~~i~--~~~~lv~~mkei~D~kd~lrt-------------------n~~~~~~wl~q  370 (863)
T KOG2033|consen  312 LSGEGLGTLLQQWVGKKNAAWIEKTIA--VTHKLVAEMKEIFDNKDQLRT-------------------NLQAITAWLKQ  370 (863)
T ss_pred             ccHHHHHhhHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHh-------------------CCCcchHHHHH
Confidence            999999999999999998 89999984  999999999988887766663                   23557899999


Q ss_pred             HHHHhcCCCchHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCCcchhhhhccCCCCCCCcccccCCcc
Q 001514          404 RELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNST  483 (1063)
Q Consensus       404 c~~lL~~~l~~W~~lfq~lF~~R~k~II~~~f~~i~~~~~l~~~l~~i~~~~~~~~~d~~~~~~~~s~~~~~W~~~~~~~  483 (1063)
                      |..+++++++||+++||++|++|+|+||+++|.+.++-.. .+++..|.+.    +.+++         .++||+++|+.
T Consensus       371 ~~~llgs~L~fyd~~~q~afvdR~k~li~ss~~sa~k~~~-v~al~eIes~----~sn~p---------l~~Wfespndl  436 (863)
T KOG2033|consen  371 DWPLLGSNLSFYDKLLQTAFVDRAKILIISSWASAMKLTY-VQALLEIESI----ESNAP---------LQKWFESPNDL  436 (863)
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc----cccCc---------cceeeeCCCCc
Confidence            9999999999999999999999999999999988777655 6788888752    22222         35677777644


Q ss_pred             cccccccccccCCCCCcchhhhhhhccChhHHHHHHHHHHHHHHHHHHHhhhcCCCCCccchhh---HHHHHHHHHHHHH
Q 001514          484 VKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKD---LAPYLQNKCYESM  560 (1063)
Q Consensus       484 ~~~~~l~~~~k~~~~~~~~~s~~~~~~~P~V~~lc~~lD~~L~~iL~Dl~~yl~~~~~~~r~~~---L~~~L~~~c~~~i  560 (1063)
                      +.  ++....++.++  +|.+|.+.|++|.++ +|..||++|+.+|+|++.|+++++. .|++|   +.+||++..-   
T Consensus       437 p~--~ai~~~~~~p~--~fass~~~y~g~~is-lc~~~Ds~l~~kl~dLl~~les~tt-~r~aDk~sl~EfLre~a~---  507 (863)
T KOG2033|consen  437 PQ--TAIFDERTYPP--DFASSQSHYGGISIS-LCNKFDSHLADKLSDLLDKLESKTT-KRFADKNSLFEFLRETAK---  507 (863)
T ss_pred             ch--hhhhhcccCch--hhhhhhcccCCchhH-HHHHHHHHHHHHHHHHHHhchhHHH-HHHhhhhhHHHHHHHhcc---
Confidence            32  23223344443  588999888888875 6777999999999999999999932 36766   8889984322   


Q ss_pred             HHHHHHHHHHHhhHHHHHhhCCCCCchhHHhHHHHHHHHHHHHHHhcCCCCcccccCCcchhhhhhhhhhhccchhhhhh
Q 001514          561 STILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQS  640 (1063)
Q Consensus       561 ~~il~~lk~el~~l~~~~~~~~~~~~~~~~~~~~LflgRl~~aL~~lcp~L~~~lg~~~~w~~~~~~a~~~~~~s~~r~~  640 (1063)
                           +...++.++.-.+..+.        .+..|++.|+|.+|+++|||||.|+..|..                    
T Consensus       508 -----~~~~e~~S~~~G~~l~~--------~h~~L~~lRl~~~l~elsp~Lk~c~~qpse--------------------  554 (863)
T KOG2033|consen  508 -----LNFFEFFSQKWGFSLKK--------RHFFLVLLRLSNFLNELSPALKNCVKQPSE--------------------  554 (863)
T ss_pred             -----hHHHHHHHHHHHHHhhh--------hhhHHhhHHHHHHHHHhChHHHhHHhCchh--------------------
Confidence                 22222222211111111        147899999999999999999977765532                    


Q ss_pred             hhhccccCCCCCCCcCCCcccccchhHHhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccc
Q 001514          641 RVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDL-GKD  719 (1063)
Q Consensus       641 r~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~g~~~~~~~k~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L-~~d  719 (1063)
                                         +|||++-++++++      ++|||++++.+.++|+.+ .+|..|++++|.+.+.+.| .+|
T Consensus       555 -------------------SrkQ~~~~tael~------~akfeeic~~m~d~~~s~-~lW~~~v~dvL~h~llr~L~l~d  608 (863)
T KOG2033|consen  555 -------------------SRKQWLEQTAELC------IAKFEEICTPMADMATSN-ALWETMVTDVLQHLLLRLLELHD  608 (863)
T ss_pred             -------------------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhc
Confidence                               2456666666663      789999999999999999 9999999999999999999 999


Q ss_pred             ccccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHH
Q 001514          720 DGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIY  799 (1063)
Q Consensus       720 ~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~q~~L~~~c~el~rig~h~Lpk~~lq~l~~~l~~~vl~~Y  799 (1063)
                      |.++++++++.|+|++|+|++|+++  ++|||||+|||||+|+|||.+|+||||||||+|||+|||+|+++|+.+|+.||
T Consensus       609 D~~svla~f~~W~el~l~e~dEsqs--tlkIrLPsqPslyiqSfL~rl~qeInrvggh~Lp~~vLQ~f~~sl~~k~~~~Y  686 (863)
T KOG2033|consen  609 DKQSVLARFLAWAELALAELDESQS--TLKIRLPSQPSLYIQSFLQRLHQEINRVGGHTLPPKVLQAFIQSLIGKLLCHY  686 (863)
T ss_pred             ccchhhhhhhhHHHHHHHHHhcccc--eeeeecCCCccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998877665  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcccccchhhHHHHHhhHHhHHHhhcCCCCCCCccccccchhhccccccchhhhhhhhHHhHHHHHHHHhcC
Q 001514          800 RNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQR  879 (1063)
Q Consensus       800 ~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  879 (1063)
                      |+|..+.. .  ..+||+||||||||||+.+||++++.              .|+.          ++||+++.+.|+++
T Consensus       687 E~l~~a~~-~--kasqn~aLQll~DLrfl~~Vl~~~~~--------------eR~~----------~DrI~~vt~qL~~~  739 (863)
T KOG2033|consen  687 EGLAHAEC-T--KASQNIALQLLFDLRFLERVLAISRE--------------ERTL----------YDRIHAVTNQLRDY  739 (863)
T ss_pred             hhhhHHHH-H--HHHHhhHHHHHHHHHHHHHHHhcCcc--------------cccc----------hhHHHHHHHHHHHh
Confidence            99876532 2  58999999999999999999999652              1444          45899999999999


Q ss_pred             CCCccccccchHHHhHHHHHHHhhhhhhhhccccCcccccccCCCCCCCCCcccccCCCCCcccccccccCcCCCCCCcc
Q 001514          880 LDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRATTKT  959 (1063)
Q Consensus       880 IDPfD~~vf~p~L~~N~~r~~~R~~vlfG~L~~~~~~~~~~s~~~~~~~~~Nil~ls~~prF~lLPis~p~~ssr~~~s~  959 (1063)
                      ||||||++|+||||+|++|+|+|++||||++|+.++|+++++++++++.+||||||+++|||||||||||+++++.+..+
T Consensus       740 iDPfD~~~f~phl~~n~~r~~~R~~vlfG~~t~~~~q~a~~as~l~~~~~~Nilplsss~rF~lLPismpaa~s~~s~e~  819 (863)
T KOG2033|consen  740 IDPFDFELFAPHLTANVSRAASRLQVLFGVLTPAPSQGAAAASSLAHEADPNILPLSSSGRFPLLPISMPAAGSVTSAER  819 (863)
T ss_pred             cCchhHHhhhhHHHHHHHHHHHHHhhhheeecCCccccchhhhhhhccCCCCccccccCCCccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchhcccccccccccCcccccccCCCCCCcccchhhhhhhh
Q 001514          960 SAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFM 1005 (1063)
Q Consensus       960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1063)
                      +.|....|-+-+. |+... |+.+++.|.+.|+++|++   +++||
T Consensus       820 k~pv~~p~~sta~-~pt~~-G~~~r~~dsee~~ssa~s---ff~~~  860 (863)
T KOG2033|consen  820 KSPVQEPVESTAT-TPTRK-GNGARKGDSEESKSSAAS---FFGMS  860 (863)
T ss_pred             cCCCCCchhhhcC-CCCCC-CcccccccccccccchHh---Hhccc
Confidence            9999999998888 99998 999999999999999987   56555

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [] Back     alignment and domain information
>KOG2346 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1063
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 85.7 bits (211), Expect = 6e-17
 Identities = 125/744 (16%), Positives = 209/744 (28%), Gaps = 250/744 (33%)

Query: 243 GNANFTSSDVVSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIP 302
           G   +   D++SVF           A V     + + DMP   K IL+      +     
Sbjct: 12  GEHQYQYKDILSVFED---------AFVDNFDCKDVQDMP---KSILSKEEIDHIIM--- 56

Query: 303 NPDEEVRLWKLFRDKLESVMVILDKDYIAKTCFSW-LRECGGEIVNKINGKFLIDTITTG 361
           + D      +LF                      W L     E+V K    F+ +     
Sbjct: 57  SKDAVSGTLRLF----------------------WTLLSKQEEMVQK----FVEE----- 85

Query: 362 KELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRIRELILKADSDLWD--EIF 419
                             VL  +  +L S   +E   P S +  + ++    L++  ++F
Sbjct: 86  ------------------VLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVF 126

Query: 420 EDAFVQRMKMI--IDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWF 477
               V R++    +     +L    NV     +I G                  G G   
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNV-----LIDGV----------------LGSG--- 162

Query: 478 IEPNSTVKKAGVVLGHKALPEDNDFQNCLNAYFG---LEVSRIRDAVDSCCQNVLEDLLS 534
                   K    +           Q  ++  F    L +             VLE L  
Sbjct: 163 --------KT--WVALDVC-LSYKVQCKMD--FKIFWLNLKNCNSPET-----VLEMLQK 204

Query: 535 FLESPKAPLRLKDLAPYLQNKCYESMSTI---LMELKRELDNLYAAIESGTESVPTAIIV 591
            L           + P   ++  +  S I   +  ++ EL  L       ++     ++V
Sbjct: 205 LL---------YQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLK-----SKPYENCLLV 249

Query: 592 ERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQSRVATDSSMADS 651
             ++   +   AF    K    IL + RF        V D LS            SM  +
Sbjct: 250 LLNVQNAKAWNAFNLSCK----ILLTTRF------KQVTDFLSAATTTHISLDHHSMTLT 299

Query: 652 PGKQIPTGSRRQTSAATAALLGTNESESPK---------LKELTRTTRDLCIRAHSLWIT 702
           P          +  +     L     + P+         L  +  + RD        W  
Sbjct: 300 P---------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDN 346

Query: 703 WL---SDELSFILS---------------RDLG---KDDGLSATTSLRGWEETVVKQEQS 741
           W     D+L+ I+                  L        +        W + V+K +  
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD-VIKSDVM 405

Query: 742 DESQSEMKISL------PSMPSLYIISF-LCRACEE---IHRIGGHVLDK-SILQKFSSR 790
                  K SL       S  S+  I   L    E    +HR    ++D  +I + F S 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTFDSD 462

Query: 791 -LLEKVIGIYRNFLSTIEAH--ESQVSEKGVL--QVLFDLRFSADVLSGGDSNRNESSKN 845
            L+   +  Y  F S I  H    +  E+  L   V  D RF                  
Sbjct: 463 DLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLDFRF------------------ 502

Query: 846 SKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQRLDPI-DWLTYEPYLRENEKQAYVRHA 904
                   +K         +R H     N     L+ +     Y+PY+ +N+ + Y R  
Sbjct: 503 ------LEQK---------IR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLV 545

Query: 905 VLFGFFVQ------LNRMYTDTVQ 922
                F+       +   YTD ++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR 569
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1063
d2d2sa1229 Exocyst complex component EXO84 {Baker's yeast (Sa 88.89
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.89  E-value=0.51  Score=21.65  Aligned_cols=148  Identities=21%  Similarity=0.207  Sum_probs=92.6

Q ss_pred             HHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             11334565201716888620168417999999999998898621343333465158999999998849999999998620
Q 001514          119 GIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLL  198 (1063)
Q Consensus       119 ~~aaqiKlL~d~PE~IW~~Le~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~fr~~Il~~~~~~L~  198 (1063)
                      +..-++|-+.|.||.+=-++..++|=.|-.+.--++.....+.....   ....+++..-...+..-+..+....-..|.
T Consensus         4 ~~~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~---~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~   80 (229)
T d2d2sa1           4 STAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERIS---DEELMLLNLISLKIEQRREAISSKLSQSIL   80 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             08764413726618889999986099999999999999973634567---532789999999999999999999999985


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf             069898999999999994129998999999999999999998458989887137899999999----9999999651332
Q 001514          199 DNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMK----VIQITVAQVGELF  274 (1063)
Q Consensus       199 ~~~~s~~~~~~aLaAl~Lle~ss~~q~L~~FL~~R~~ai~~~L~~~~~~~~~~vk~vi~~~l~----li~~TL~~v~aLF  274 (1063)
                      . ..+..++..++..+.-|.  ...++-..||+.|..+|...+.+...++..  ..-+..+..    .|..|..+-.++|
T Consensus        81 ~-~~~~~~~~~~v~~L~rLg--~~~~A~~lfL~~rs~~l~~~i~~~~~~~~~--~~Yi~~l~~i~f~~i~~t~~~y~aiF  155 (229)
T d2d2sa1          81 S-SNEIVHLKSGTENMIKLG--LPEQALDLFLQNRSNFIQDLILQIGSVDNP--TNYLTQLAVIRFQTIKKTVEDFQDIF  155 (229)
T ss_dssp             T-CSSHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHCC--CCSH--HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             H-CCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2-588389999999999928--836999999999999999999845768989--99999999999999999999999992