Citrus Sinensis ID: 001554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050-----
Protein Sequence
MGNPLPFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKKKGKVHRSISSGHALRRNL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEccccccEEEEEcccccccEEccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccHHHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccHHHcccccccEEEccccEEEEEEccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHHHHHHcccccccccccEEEEEEEcccccEEEEEEEEEEEccccEEHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccHHccccccEEccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEccccccccccccccccHHHHHHHcccccEEEcccccccccccHHHHHcccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEEccccccccccccHccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEccccccccccHHHHHcccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHHcccccEEEEcccccEEEcccccccccHHHHHHHHcccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEcccccccccccccccccccccEEEEcccccccccccccccccEEEEEccccccccccHHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHcccccEEEEEEcccccccccccHcccccccEEEEEEccccccccccHHHHHHHHHHHHccccccccccccHHHccccccEEEHEEEEEcccccHHHHHHccEEEEEEcccccccccccHHHHHHHHHcEEEccccccccccccHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHccc
Coil and Loop (DISEMBL)
mgnplpfwswkiWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFkrglsfdpqtdstnkllswssttdccswdgvtcdprtghvigldisssfitggingssslfDLQRlqhlnladnslysspfpsgfdrLFSLThlnlsysgfsghipleISSLKMLVSLdlsasglvapIQLRRANLEKLVKNLTNLEELYlggidisgadwgpILSILSnlrilslpdchvagpihsslSKLQLLTHlnldgndlssevpdfltnFSSLQYLHLSLcglygrvpekiflmpslcfldvssnsnltgslpefppssqlkvielsetrfsgklpdsinnlalledlelsdcnffgsipssfgnltelinidfsrnnfsgslpsfassnkVISLKFahnsftgtiplsygdqliSLQVLDLRnnslqgiipkslytKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSqnklqglvpesifqikglnvlrlssnkfsgfITLEMFKDLRQlgtlelsennfsfnvsgsnsnmfpkigtlklssckitefpnflrnqtnlfhldlsnnrikgeipnwtwnvgdgkLVHLNLSHNMLEafekpgpnltSTVLAVLDLHSnmlqgsfpippasiifldysenkfttnipynignYINYAVFFSLAsnnlsggiplslcnafdlqvldlsdnhltgsipsclvssNILKVLKLRnneflgtvpqvignecslrtldlsqnhlagslpkslskctslevldvgknqlngsfpfwletLPQLRVLVLQSnnydgsikDTQTANAFALLQIIDissnnfsgnlparwFQSWRgmkkrtkesqESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSidvsnnqfegeipeMLGDFDALLVLNMsnnnfkgqipatlgnlkelgsldlshnqlsgkipekLATLNFLSVLKLSQNllvgeiprgpqfatftaasfegnaglcgfplpkacqnalppveqttkdeegsgsifdweffwigfgfgdgtGMVIGITLGVVVSNEIIKKKGKVHRSISSGHALRRNL
Flexible Loop (DISEMBL)
MGNPLPFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDIssnnfsgnlpARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNeiikkkgkvhrsissghalrrnl
Low Complexity Region (SEG)
MGNPLPfwswkiwfssfffgfsLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPilsilsnlrilslPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELsennfsfnvsgsnsnmfPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTnipynignyinyAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKKKGKVHRSISSGHALRRNL
Disordered region (IsUnstruct)
****LPFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVS***************************FSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKF***************NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGM**********QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNA**************GSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKK******************
Disordered Region (DISOPRED)
*****PFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMK***********LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPL**************************WEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKKKGKVHRSIS*********
Disordered Region (DISEMBL)
MGNPLPFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWR***********SQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPP*********GSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKK******************
Disordered Region (DISPRO)
***PLPFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQ*DSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKAC******************SIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKKKGKVHRS***********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNPLPFWSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPxxxxxxxxxxxxxxxxxxxxxYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSNEIIKKKGKVHRSISSGHALRRNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1055	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.661	0.824	0.355	2e-94
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.758	0.640	0.304	6e-83
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.751	0.633	0.284	2e-69
Q9FL28	1173	LRR receptor-like serine/	no	no	0.631	0.567	0.321	2e-68
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.589	0.521	0.316	4e-61
O49318	1124	Probable leucine-rich rep	no	no	0.593	0.556	0.3	6e-59
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.618	0.574	0.307	1e-58
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.599	0.574	0.292	4e-58
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.589	0.553	0.301	1e-57
Q9LP24	1120	Probable leucine-rich rep	no	no	0.631	0.594	0.300	5e-57

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  347 bits (891), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 257/722 (35%), Positives = 377/722 (52%), Gaps = 24/722 (3%)

Query: 310  LKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFS 369
            L+ ++L+     G++P S+ NL+ L  + L    F G IP+S GNL +L ++  + N  +
Sbjct: 112  LRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLT 171

Query: 370  GSLPS-FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQ 428
            G +PS   + +++++L+   N   G IP S GD L  L+ L L +N+L G IP SL    
Sbjct: 172  GEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGD-LKQLRNLSLASNNLIGEIPSSLGNLS 230

Query: 429  SIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNK 488
            ++  L+L  N+  G++      + + LR M F  N L G +P S   +  L++  LSSN 
Sbjct: 231  NLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNN 289

Query: 489  FSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT---EFPNF 545
            F+     +M      L   ++S N+FS     S   + P + ++ L   + T   EF N 
Sbjct: 290  FTSTFPFDM-SIFHNLEYFDVSYNSFSGPFPKSLL-LIPSLESIYLQENQFTGPIEFAN- 346

Query: 546  LRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAV 605
              + T L  L L  NR+ G IP     + +  L  L++SHN       P  +    +L  
Sbjct: 347  TSSSTKLQDLILGRNRLHGPIPESISRLLN--LEELDISHNNFTGAIPPTISKLVNLLH- 403

Query: 606  LDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPL 665
            LDL  N L+G  P     +  +  S N F++    N            L SN+  G IP 
Sbjct: 404  LDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQGPIPY 461

Query: 666  SLCNAFDLQVLDLSDNHLTGSIPSCLVS-SNILKVLKLRNNEFLGTVPQVIGNECSLRTL 724
             +C    L  LDLS+N  +GSIPSC+ + S  +K L L +N F GT+P +      L +L
Sbjct: 462  MICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSL 521

Query: 725  DLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIK 784
            D+S N L G  PKSL  C +LE+++V  N++   FP WLE+LP L VL L+SN + G + 
Sbjct: 522  DVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLY 581

Query: 785  DTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLY 844
                +  F  L+IIDIS NNFSG LP  +F +W+ M   T+E  +     + Y   ++ Y
Sbjct: 582  HRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRY---ADSY 638

Query: 845  YQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQ 904
            Y + + ++NKG+ M   +I   F +ID S N+  G IPE LG    L VLN+S N F   
Sbjct: 639  YHE-MEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSV 697

Query: 905  IPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTA 964
            IP  L NL +L +LD+S N+LSG+IP+ LA L+FLS +  S NLL G +PRG QF     
Sbjct: 698  IPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKC 757

Query: 965  ASFEGNAGLCGFPLPKACQN--ALPPVEQTTKD-EEGSGSIFDWEFFWIGFGFGDGTGMV 1021
            +SF  N GL G  L   C++  AL P  Q  +D  E   ++F+W    I +G G   G+V
Sbjct: 758  SSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGLV 815

Query: 1022 IG 1023
            IG
Sbjct: 816  IG 817

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  310 bits (793), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 296/971 (30%), Positives = 443/971 (45%), Gaps = 171/971 (17%)

Query: 40  LLEFKRGLSFDPQTDSTNKLLSWSS-TTDCCSWDGVTCDPRTG--HVIGLDISSSFITGG 96
           LLE K+ L  +PQ D  + L  W+S   + CSW GVTCD  TG   VI L+++   +TG 
Sbjct: 30  LLEVKKSLVTNPQED--DPLRQWNSDNINYCSWTGVTCD-NTGLFRVIALNLTGLGLTGS 86

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           I+     FD   L HL+L+ N+L   P P+    L SL  L L  +  +G IP ++ SL 
Sbjct: 87  ISPWFGRFD--NLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLV 143

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD------------- 203
            + SL +  + LV  I        + + NL NL+ L L    ++G               
Sbjct: 144 NIRSLRIGDNELVGDI-------PETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSL 196

Query: 204 -------WGPILSILSN---LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVP 253
                   GPI + L N   L + +  +  + G I + L +L+ L  LNL  N L+ E+P
Sbjct: 197 ILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIP 256

Query: 254 DFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPE-FPPSSQLKV 312
             L   S LQYL L    L G +P+ +  + +L  LD+S+N NLTG +PE F   SQL  
Sbjct: 257 SQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSAN-NLTGEIPEEFWNMSQLLD 315

Query: 313 IELSETRFSGKLPDSI-NNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS 371
           + L+    SG LP SI +N   LE L LS     G IP        L  +D S N+ +GS
Sbjct: 316 LVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGS 375

Query: 372 LP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
           +P +     ++  L   +N+  GT+  S  + L +LQ L L +N+L+G +PK +   + +
Sbjct: 376 IPEALFELVELTDLYLHNNTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKL 434

Query: 431 ESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
           E L L +N+F G++ + +  +  SL+ +D   N  +G +P SI ++K LN+L L  N+  
Sbjct: 435 EVLFLYENRFSGEIPQ-EIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELV 493

Query: 491 GFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQT 550
           G +   +  +  QL  L+L++N  S ++  S        G LK                 
Sbjct: 494 GGLPASL-GNCHQLNILDLADNQLSGSIPSS-------FGFLK----------------- 528

Query: 551 NLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHS 610
            L  L L NN ++G +P+   ++ +  L  +NLSHN L     P                
Sbjct: 529 GLEQLMLYNNSLQGNLPDSLISLRN--LTRINLSHNRLNGTIHP---------------- 570

Query: 611 NMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNA 670
             L GS     +S +  D + N F   IP  +GN  N      L  N L+G IP +L   
Sbjct: 571 --LCGS-----SSYLSFDVTNNGFEDEIPLELGNSQNLD-RLRLGKNQLTGKIPWTLGKI 622

Query: 671 FDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH 730
            +L +LD+S N LTG+IP  LV    L  + L NN   G +P  +G    L  L LS N 
Sbjct: 623 RELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQ 682

Query: 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790
              SLP  L  CT L VL +  N LNGS P  +  L  L VL L  N + GS+   Q   
Sbjct: 683 FVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLP--QAMG 740

Query: 791 AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVT 850
             + L  + +S N+ +G +P                                        
Sbjct: 741 KLSKLYELRLSRNSLTGEIP---------------------------------------- 760

Query: 851 LMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLG 910
                  +E+ ++  + +++D+S N F G+IP  +G    L  L++S+N   G++P ++G
Sbjct: 761 -------VEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVG 813

Query: 911 NLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGN 970
           ++K LG L++S N L GK+ +                          QF+ + A SF GN
Sbjct: 814 DMKSLGYLNVSFNNLGGKLKK--------------------------QFSRWPADSFLGN 847

Query: 971 AGLCGFPLPKA 981
            GLCG PL + 
Sbjct: 848 TGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  264 bits (675), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 280/983 (28%), Positives = 423/983 (43%), Gaps = 190/983 (19%)

Query: 40  LLEFKRGLSFDPQTDSTNKLLSWSS-TTDCCSWDGVTCDPRTGHVIGLDISSSFITGGIN 98
           LLE K     +P+ +    L  W+S +   C+W GVTC  R   +IG             
Sbjct: 33  LLELKNSFITNPKEEDV--LRDWNSGSPSYCNWTGVTCGGR--EIIG------------- 75

Query: 99  GSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKML 158
                                                 LNLS  G +G I   I     L
Sbjct: 76  --------------------------------------LNLSGLGLTGSISPSIGRFNNL 97

Query: 159 VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILS 218
           + +DLS++ LV PI    +NL   +++L     L                          
Sbjct: 98  IHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNL-------------------------- 131

Query: 219 LPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE 278
                ++G I S L  L  L  L L  N+L+  +P+   N  +LQ L L+ C L G +P 
Sbjct: 132 -----LSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPS 186

Query: 279 KIFLMPSLCFLDVSSNSNLTGSLP-EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDL 337
           +   +  L  L +  N  L G +P E    + L +   +  R +G LP  +N L  L+ L
Sbjct: 187 RFGRLVQLQTLILQDNE-LEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTL 245

Query: 338 ELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPL 397
            L D +F G IPS  G+L  +  ++   N   G +P   +                    
Sbjct: 246 NLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLT-------------------- 285

Query: 398 SYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLRE 457
               +L +LQ LDL +N+L G+I +  +    +E L+L +N+  G L K   +++ SL++
Sbjct: 286 ----ELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQ 341

Query: 458 MDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN 517
           +  S+ +L G +P  I   + L +L LS+N  +G I   +F+ L +L  L L+ N+    
Sbjct: 342 LFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQ-LVELTNLYLNNNSLEGT 400

Query: 518 VSGSNSNM----------------FPK----IGTLKLSSCKITEF----PNFLRNQTNLF 553
           +S S SN+                 PK    +G L++       F    P  + N T L 
Sbjct: 401 LSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQ 460

Query: 554 HLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            +D   NR+ GEIP+    + D  L  L+L  N L     P        + V+DL  N L
Sbjct: 461 EIDWYGNRLSGEIPSSIGRLKD--LTRLHLRENELVG-NIPASLGNCHQMTVIDLADNQL 517

Query: 614 QGSFP----IPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCN 669
            GS P       A  +F+ Y+ N    N+P ++ N  N     + +SN  +G I   LC 
Sbjct: 518 SGSIPSSFGFLTALELFMIYN-NSLQGNLPDSLINLKNLTRI-NFSSNKFNGSIS-PLCG 574

Query: 670 AFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729
           +      D+++N   G IP  L  S  L  L+L  N+F G +P+  G    L  LD+S+N
Sbjct: 575 SSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRN 634

Query: 730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTA 789
            L+G +P  L  C  L  +D+  N L+G  P WL  LP L  L L SN + GS+      
Sbjct: 635 SLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLP----T 690

Query: 790 NAFALLQIIDI--SSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
             F+L  I+ +    N+ +G++P                            E+ NL   +
Sbjct: 691 EIFSLTNILTLFLDGNSLNGSIPQ---------------------------EIGNLQALN 723

Query: 848 SVTLMNKGLSMEL----AKILTIFTSIDVSNNQFEGEIPEMLGDFDALL-VLNMSNNNFK 902
           ++ L    LS  L     K+  +F  + +S N   GEIP  +G    L   L++S NNF 
Sbjct: 724 ALNLEENQLSGPLPSTIGKLSKLF-ELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFT 782

Query: 903 GQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATF 962
           G+IP+T+  L +L SLDLSHNQL G++P ++  +  L  L LS N L G++ +  QF+ +
Sbjct: 783 GRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK--QFSRW 840

Query: 963 TAASFEGNAGLCGFPLPKACQNA 985
            A +F GNAGLCG PL   C  A
Sbjct: 841 QADAFVGNAGLCGSPLSH-CNRA 862

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  261 bits (667), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 231/718 (32%), Positives = 336/718 (46%), Gaps = 52/718 (7%)

Query: 302 PEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINI 361
           P     + L+V++L+   F+GK+P  I  L  L  L L    F GSIPS    L  +  +
Sbjct: 90  PAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYL 149

Query: 362 DFSRNNFSGSLPS-FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQV------------ 408
           D   N  SG +P     ++ ++ + F +N+ TG IP   GD L+ LQ+            
Sbjct: 150 DLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGD-LVHLQMFVAAGNHLTGSI 208

Query: 409 ------------LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL-EKFQNASSLSL 455
                       LDL  N L G IP+      +++SL+L +N   G +  +  N SSL  
Sbjct: 209 PVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLV- 267

Query: 456 REMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFS 515
            +++   N+L G +P  +  +  L  LR+  NK +  I   +F+ L QL  L LSEN+  
Sbjct: 268 -QLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFR-LTQLTHLGLSENHLV 325

Query: 516 FNVSGSNSNMFPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVG 574
             +S         +  L L S   T EFP  + N  NL  L +  N I GE+P       
Sbjct: 326 GPIS-EEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELP-----AD 379

Query: 575 DGKLVHL-NLS-HNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFP--IPPASIIFLDYS 630
            G L +L NLS H+ L     P      T L +LDL  N + G  P      ++ F+   
Sbjct: 380 LGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIG 439

Query: 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC 690
            N FT  IP +I N  N     S+A NNL+G +   +     L++L +S N LTG IP  
Sbjct: 440 RNHFTGEIPDDIFNCSNLETL-SVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPRE 498

Query: 691 LVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV 750
           + +   L +L L +N F G +P+ + N   L+ L +  N L G +P+ +     L VLD+
Sbjct: 499 IGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDL 558

Query: 751 GKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810
             N+ +G  P     L  L  L LQ N ++GSI    +  + +LL   DIS N  +G +P
Sbjct: 559 SNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP--ASLKSLSLLNTFDISDNLLTGTIP 616

Query: 811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKIL----TI 866
                S + M+     S  + +   +  EL  L     + L N   S  + + L     +
Sbjct: 617 GELLASLKNMQLYLNFSN-NLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNV 675

Query: 867 FTSIDVSNNQFEGEIP-EMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925
           FT +D S N   G IP E+    D ++ LN+S N+F G+IP + GN+  L SLDLS N L
Sbjct: 676 FT-LDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNL 734

Query: 926 SGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLP-KAC 982
           +G+IPE LA L+ L  LKL+ N L G +P    F    A+   GN  LCG   P K C
Sbjct: 735 TGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  237 bits (604), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 213/674 (31%), Positives = 326/674 (48%), Gaps = 52/674 (7%)

Query: 322 GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASS-NK 380
           G++P  I++L  L +L L+   F G IP    NL  L  +D S N+ +G LP   S   +
Sbjct: 79  GQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQ 138

Query: 381 VISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
           ++ L  + N F+G++P S+   L +L  LD+ NNSL G IP  +    ++ +L +G N F
Sbjct: 139 LLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSF 198

Query: 441 HGQ----------LEKFQNASSL-------------SLREMDFSQNKLQGLVPESIFQIK 477
            GQ          L+ F   S                L ++D S N L+  +P+S  ++ 
Sbjct: 199 SGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELH 258

Query: 478 GLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC 537
            L++L L S +  G I  E+  + + L +L LS N+    +SG       +I  L  S+ 
Sbjct: 259 NLSILNLVSAELIGLIPPEL-GNCKSLKSLMLSFNS----LSGPLPLELSEIPLLTFSAE 313

Query: 538 K---ITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKP 594
           +       P+++     L  L L+NNR  GEIP+   +     L HL+L+ N+L     P
Sbjct: 314 RNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPHEIEDCP--MLKHLSLASNLLSG-SIP 370

Query: 595 GPNLTSTVLAVLDLHSNMLQGSFPI---PPASIIFLDYSENKFTTNIPYNIGNYINYAVF 651
                S  L  +DL  N+L G+        +S+  L  + N+   +IP ++      A+ 
Sbjct: 371 RELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLPLMAL- 429

Query: 652 FSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTV 711
             L SNN +G IP SL  + +L     S N L G +P+ + ++  LK L L +N+  G +
Sbjct: 430 -DLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGEI 488

Query: 712 PQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRV 771
           P+ IG   SL  L+L+ N   G +P  L  CTSL  LD+G N L G  P  +  L QL+ 
Sbjct: 489 PREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQC 548

Query: 772 LVLQSNNYDGSIKDTQTAN-------AFALLQ---IIDISSNNFSGNLPARWFQSWRGMK 821
           LVL  NN  GSI    +A          + LQ   I D+S N  SG +P    +    ++
Sbjct: 549 LVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVLVE 608

Query: 822 KRTKESQESQILKFVYLELSNLYYQD-SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGE 880
                +  S  +      L+NL   D S   +   +  E+   L +   ++++NNQ  G 
Sbjct: 609 ISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKL-QGLNLANNQLNGH 667

Query: 881 IPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLS 940
           IPE  G   +L+ LN++ N   G +PA+LGNLKEL  +DLS N LSG++  +L+T+  L 
Sbjct: 668 IPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLV 727

Query: 941 VLKLSQNLLVGEIP 954
            L + QN   GEIP
Sbjct: 728 GLYIEQNKFTGEIP 741

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  230 bits (586), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 216/720 (30%), Positives = 324/720 (45%), Gaps = 94/720 (13%)

Query: 265 LHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP-EFPPSSQLKVIELSETRFSGK 323
           L LS   L G V   I  + +L +L+++ N+ LTG +P E    S+L+V+ L+  +F G 
Sbjct: 90  LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNA-LTGDIPREIGNCSKLEVMFLNNNQFGGS 148

Query: 324 LPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVI 382
           +P  IN L+ L    + +    G +P   G+L  L  +    NN +G LP S  + NK+ 
Sbjct: 149 IPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLT 208

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
           + +   N F+G IP   G + ++L++L L  N + G +PK +     ++ ++L QNKF G
Sbjct: 209 TFRAGQNDFSGNIPTEIG-KCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSG 267

Query: 443 QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLR 502
            + K    +  SL  +    N L G +P  I  +K L  L L  N+ +G I  E+ K L 
Sbjct: 268 FIPK-DIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGK-LS 325

Query: 503 QLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNR 561
           ++  ++ SEN  S  +    S +  ++  L L   K+T   PN L    NL  LDLS N 
Sbjct: 326 KVMEIDFSENLLSGEIPVELSKI-SELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINS 384

Query: 562 IKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP 621
           + G IP    N+   +   L L HN L      G  L S  L V+D   N L G   IPP
Sbjct: 385 LTGPIPPGFQNLTSMR--QLQLFHNSLSGVIPQGLGLYSP-LWVVDFSENQLSGK--IPP 439

Query: 622 -----ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVL 676
                +++I L+   N+   NIP  +       +   +  N L+G  P  LC   +L  +
Sbjct: 440 FICQQSNLILLNLGSNRIFGNIPPGVLR-CKSLLQLRVVGNRLTGQFPTELCKLVNLSAI 498

Query: 677 DLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLP 736
           +L  N  +G +P  + +   L+ L L  N+F   +P  I    +L T ++S N L G +P
Sbjct: 499 ELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIP 558

Query: 737 KSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQ 796
             ++ C  L+ LD+ +N   GS P  L +L QL                          +
Sbjct: 559 SEIANCKMLQRLDLSRNSFIGSLPPELGSLHQL--------------------------E 592

Query: 797 IIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGL 856
           I+ +S N FSGN+P                                       T+ N   
Sbjct: 593 ILRLSENRFSGNIP--------------------------------------FTIGN--- 611

Query: 857 SMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDAL-LVLNMSNNNFKGQIPATLGNLKEL 915
                  LT  T + +  N F G IP  LG   +L + +N+S N+F G+IP  +GNL  L
Sbjct: 612 -------LTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLL 664

Query: 916 GSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCG 975
             L L++N LSG+IP     L+ L     S N L G++P    F   T  SF GN GLCG
Sbjct: 665 MYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  228 bits (582), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 212/689 (30%), Positives = 325/689 (47%), Gaps = 36/689 (5%)

Query: 313 IELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSL 372
           I L   + SG++ D I+ L +L  L L   +F G+IP+S    T L+++    N+ SG L
Sbjct: 73  IRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKL 132

Query: 373 P-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIE 431
           P +  +   +     A N  +G IP+       SLQ LD+ +N+  G IP  L     ++
Sbjct: 133 PPAMRNLTSLEVFNVAGNRLSGEIPVGLPS---SLQFLDISSNTFSGQIPSGLANLTQLQ 189

Query: 432 SLLLGQNKFHGQL-EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
            L L  N+  G++     N  SL    +DF  N LQG +P +I     L  L  S N+  
Sbjct: 190 LLNLSYNQLTGEIPASLGNLQSLQYLWLDF--NLLQGTLPSAISNCSSLVHLSASENEIG 247

Query: 491 GFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQT 550
           G I    +  L +L  L LS NNFS  V  S   +F    +L +       F + +R +T
Sbjct: 248 GVIP-AAYGALPKLEVLSLSNNNFSGTVPFS---LFCNT-SLTIVQLGFNAFSDIVRPET 302

Query: 551 N------LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTS-TVL 603
                  L  LDL  NRI G  P W  N+    L +L++S N+    E P P++ +   L
Sbjct: 303 TANCRTGLQVLDLQENRISGRFPLWLTNIL--SLKNLDVSGNLFSG-EIP-PDIGNLKRL 358

Query: 604 AVLDLHSNMLQGSFPIP---PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLS 660
             L L +N L G  P+      S+  LD+  N     IP  +G Y+      SL  N+ S
Sbjct: 359 EELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLG-YMKALKVLSLGRNSFS 417

Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
           G +P S+ N   L+ L+L +N+L GS P  L++   L  L L  N F G VP  I N  +
Sbjct: 418 GYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSN 477

Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
           L  L+LS N  +G +P S+     L  LD+ K  ++G  P  L  LP ++V+ LQ NN+ 
Sbjct: 478 LSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFS 537

Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLEL 840
           G +   +  ++   L+ +++SSN+FSG +P  +          +    ++ I   +  E+
Sbjct: 538 GVVP--EGFSSLVSLRYVNLSSNSFSGEIPQTF---GFLRLLVSLSLSDNHISGSIPPEI 592

Query: 841 SNLYYQDSVTLMNKGLSMELAKILTIFTSI---DVSNNQFEGEIPEMLGDFDALLVLNMS 897
            N    + + L +  L   +   L+    +   D+  N   GEIP  +    +L  L++ 
Sbjct: 593 GNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLD 652

Query: 898 NNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNF-LSVLKLSQNLLVGEIPRG 956
           +N+  G IP +   L  L  +DLS N L+G+IP  LA ++  L    +S N L GEIP  
Sbjct: 653 HNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPAS 712

Query: 957 PQFATFTAASFEGNAGLCGFPLPKACQNA 985
                   + F GN  LCG PL + C+++
Sbjct: 713 LGSRINNTSEFSGNTELCGKPLNRRCESS 741

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  227 bits (579), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 221/756 (29%), Positives = 341/756 (45%), Gaps = 124/756 (16%)

Query: 231 SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLD 290
           + + L+ +T ++L+G +LS  +   +     L+ L++S   + G +P+ + L  SL  LD
Sbjct: 62  ACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLD 121

Query: 291 VSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS 350
           + +N                        RF G +P  +  +  L+ L L +   FGSIP 
Sbjct: 122 LCTN------------------------RFHGVIPIQLTMIITLKKLYLCENYLFGSIPR 157

Query: 351 SFGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVL 409
             GNL+ L  +    NN +G +P S A   ++  ++   N F+G IP S      SL+VL
Sbjct: 158 QIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIP-SEISGCESLKVL 216

Query: 410 DLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLV 469
            L  N L+G +PK                    QLEK QN + L L      QN+L G +
Sbjct: 217 GLAENLLEGSLPK--------------------QLEKLQNLTDLILW-----QNRLSGEI 251

Query: 470 PESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKI 529
           P S+  I  L VL L  N F+G I        R++G L                    K+
Sbjct: 252 PPSVGNISRLEVLALHENYFTGSIP-------REIGKLT-------------------KM 285

Query: 530 GTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNML 588
             L L + ++T E P  + N  +   +D S N++ G IP    ++ + KL+HL   + +L
Sbjct: 286 KRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHL-FENILL 344

Query: 589 EAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYS------ENKFTTNIPYNI 642
               +    LT  +L  LDL  N L G+ P     + FL Y       +N+    IP  I
Sbjct: 345 GPIPRELGELT--LLEKLDLSINRLNGTIP---QELQFLPYLVDLQLFDNQLEGKIPPLI 399

Query: 643 GNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKL 702
           G Y N++V   +++N+LSG IP   C    L +L L  N L+G+IP  L +   L  L L
Sbjct: 400 GFYSNFSVL-DMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLML 458

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW 762
            +N+  G++P  + N  +L  L+L QN L+G++   L K  +LE L +  N   G  P  
Sbjct: 459 GDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPE 518

Query: 763 LETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK 822
           +  L ++    + SN   G I   +   +   +Q +D+S N FSG               
Sbjct: 519 IGNLTKIVGFNISSNQLTGHIP--KELGSCVTIQRLDLSGNKFSG--------------- 561

Query: 823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKI---LTIFTSIDVSNNQFEG 879
                       ++  EL  L Y + + L +  L+ E+      LT    + +  N    
Sbjct: 562 ------------YIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSE 609

Query: 880 EIPEMLGDFDALLV-LNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNF 938
            IP  LG   +L + LN+S+NN  G IP +LGNL+ L  L L+ N+LSG+IP  +  L  
Sbjct: 610 NIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMS 669

Query: 939 LSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLC 974
           L +  +S N LVG +P    F    +++F GN GLC
Sbjct: 670 LLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score =  225 bits (574), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 221/734 (30%), Positives = 331/734 (45%), Gaps = 112/734 (15%)

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
           GP +  L +L+IL L   + +G I S+L     L  L+L  N  S ++PD L +   L+ 
Sbjct: 92  GPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEV 151

Query: 265 LHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPE-FPPSSQLKVIELSETRFSGK 323
           L+L +  L G +PE +F +P L  L +  N NLTG +P+    + +L  + +   +FSG 
Sbjct: 152 LYLYINFLTGELPESLFRIPKLQVLYLDYN-NLTGPIPQSIGDAKELVELSMYANQFSGN 210

Query: 324 LPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSN--KV 381
           +P+SI N + L+ L L      GS+P S   L  L  +    N+  G +  F S N   +
Sbjct: 211 IPESIGNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPV-RFGSPNCKNL 269

Query: 382 ISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
           ++L  ++N F G +P + G+   SL  L + + +L G IP SL   +++  L L +N+  
Sbjct: 270 LTLDLSYNEFEGGVPPALGN-CSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLS 328

Query: 442 GQL-EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
           G +  +  N SSL+L  +  + N+L G +P ++ +++ L  L L  N+FSG I +E++K 
Sbjct: 329 GSIPAELGNCSSLNL--LKLNDNQLVGGIPSALGKLRKLESLELFENRFSGEIPIEIWKS 386

Query: 501 LRQLGTLELSENNFSFNVSGSNSNMFP-KIGTLKLSSCKITEFPNFLRNQTNLFHLDLSN 559
            + L  L + +NN +  +    + M   KI TL  ++      P  L   ++L  +D   
Sbjct: 387 -QSLTQLLVYQNNLTGELPVEMTEMKKLKIATL-FNNSFYGAIPPGLGVNSSLEEVDFIG 444

Query: 560 NRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPI 619
           N++ GEIP              NL H                 L +L+L SN+L G+   
Sbjct: 445 NKLTGEIPP-------------NLCH--------------GRKLRILNLGSNLLHGT--- 474

Query: 620 PPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLS 679
                             IP +IG+      F  L  NNLSG +P        L  LD +
Sbjct: 475 ------------------IPASIGHCKTIRRFI-LRENNLSGLLP-EFSQDHSLSFLDFN 514

Query: 680 DNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL 739
            N+  G IP  L S   L  + L  N F G +P  +GN  +L  ++LS+N L GSLP  L
Sbjct: 515 SNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQL 574

Query: 740 SKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIID 799
           S C SLE  DVG N LNGS P        L  LVL  N + G I   Q       L  + 
Sbjct: 575 SNCVSLERFDVGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIP--QFLPELKKLSTLQ 632

Query: 800 ISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSME 859
           I+ N F G +P+                                                
Sbjct: 633 IARNAFGGEIPS-----------------------------------------------S 645

Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLD 919
           +  I  +   +D+S N   GEIP  LGD   L  LN+SNNN  G + + L  L  L  +D
Sbjct: 646 IGLIEDLIYDLDLSGNGLTGEIPAKLGDLIKLTRLNISNNNLTGSL-SVLKGLTSLLHVD 704

Query: 920 LSHNQLSGKIPEKL 933
           +S+NQ +G IP+ L
Sbjct: 705 VSNNQFTGPIPDNL 718

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  223 bits (569), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 226/751 (30%), Positives = 345/751 (45%), Gaps = 85/751 (11%)

Query: 293  SNSNLTGSLPEFP--PSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS 350
            +N+ + G+  +FP    S L  ++LS    SG +P    NL+ L   +LS  +  G I  
Sbjct: 85   TNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISP 144

Query: 351  SFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVL 409
            S GNL  L  +   +N  +  +PS   +   +  L  + N  TG+IP S G+ L +L VL
Sbjct: 145  SLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGN-LKNLMVL 203

Query: 410  DLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQ----LEKFQNASSLSLREMDFSQNKL 465
             L  N L G+IP  L   +S+  L L QNK  G     L   +N   L L E     N L
Sbjct: 204  YLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYE-----NYL 258

Query: 466  QGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNM 525
             G++P  I  ++ +  L LS NK +G I   +  +L+ L  L L +N  +  +       
Sbjct: 259  TGVIPPEIGNMESMTNLALSQNKLTGSIPSSL-GNLKNLTLLSLFQNYLTGGIP------ 311

Query: 526  FPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH 585
             PK+G ++                 ++  L+LSNN++ G IP+   N+ +  L  L L  
Sbjct: 312  -PKLGNIE-----------------SMIDLELSNNKLTGSIPSSLGNLKN--LTILYLYE 351

Query: 586  NMLEAFEKPG-PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTN---IPYN 641
            N L     P   N+ S +   L L++N L GS P    ++  L Y           IP  
Sbjct: 352  NYLTGVIPPELGNMESMI--DLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQE 409

Query: 642  IGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLK 701
            +GN +   +   L+ N L+G +P S  N   L+ L L  NHL+G+IP  + +S+ L  L 
Sbjct: 410  LGN-MESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLI 468

Query: 702  LRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSL---------------- 745
            L  N F G  P+ +     L+ + L  NHL G +PKSL  C SL                
Sbjct: 469  LDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFE 528

Query: 746  --------EVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQI 797
                      +D   N+ +G      E  P+L  L++ +NN  G+I  T+  N   L+++
Sbjct: 529  AFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIP-TEIWNMTQLVEL 587

Query: 798  IDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLS 857
             D+S+NN  G LP          + R   +Q S  +      L+NL   +S+ L +   S
Sbjct: 588  -DLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNL---ESLDLSSNNFS 643

Query: 858  MELAKILTIF---TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKE 914
             E+ +    F     +++S N+F+G IP  L     L  L++S+N   G+IP+ L +L+ 
Sbjct: 644  SEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQS 702

Query: 915  LGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLC 974
            L  LDLSHN LSG IP     +  L+ + +S N L G +P  P F   TA + E N GLC
Sbjct: 703  LDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Query: 975  GFPLPKACQNALPPVEQTTKDEEGSGSIFDW 1005
               +PK     L P  +  K ++ +G++  W
Sbjct: 763  S-NIPKQ---RLKPCRELKKPKK-NGNLVVW 788

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1055
224138424	1057	predicted protein [Populus trichocarpa]	0.963	0.962	0.591	0.0
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.949	0.936	0.498	0.0
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.936	0.934	0.492	0.0
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.937	0.938	0.494	0.0
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.963	0.848	0.489	0.0
359481296	1075	PREDICTED: receptor-like protein 12-like	0.981	0.963	0.477	0.0
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.925	0.945	0.486	0.0
214011438	1128	GbVe [Gossypium barbadense]	0.952	0.890	0.468	0.0
224139184	1032	predicted protein [Populus trichocarpa]	0.947	0.968	0.478	0.0
356506579	1123	PREDICTED: probable LRR receptor-like se	0.928	0.872	0.463	0.0

>gi|224138424|ref|XP_002326599.1| predicted protein [Populus trichocarpa] gi|222833921|gb|EEE72398.1| predicted protein [Populus trichocarpa]

 Score = 1132 bits (2929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1025 (59%), Positives = 752/1025 (73%), Gaps = 8/1025 (0%)

Query: 18   FFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCD 77
            F G   L  +VS +CLE Q+ +LL+ K+ LS DP   + +KLLSW+ T +CC WDGVTCD
Sbjct: 17   FVGICFLSSIVSSQCLEHQRSVLLQIKQELSIDPHFVTDSKLLSWTPTKNCCLWDGVTCD 76

Query: 78   PRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHL 137
             +TG+V+GLD+S+S IT GINGS+S+F L  LQ+L++A N LYSSPFPSGF RL SLTHL
Sbjct: 77   LQTGYVVGLDLSNSSITSGINGSTSIFSLHHLQYLSIAGNELYSSPFPSGFSRLSSLTHL 136

Query: 138  NLSYSGFSGHIPLEISSLKMLVSLDLS--ASGLVAPIQLRRANLEKLVKNLTNLEELYLG 195
            N S+SGF G +P EIS L+ LVSLDLS    G   P+ L+  ++E LV+NLT L  L+L 
Sbjct: 137  NFSWSGFFGQVPAEISFLRKLVSLDLSFYPFGSEEPVTLQNPDIETLVENLTRLRVLHLD 196

Query: 196  GIDISGAD---WGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEV 252
            GID+S A+   W  + + L NLR+L L +C++AG +H SL +L+ LT L L GN+ SS V
Sbjct: 197  GIDLSMAESKLWAVLSTKLPNLRVLGLSNCNLAGVLHPSLLQLEKLTDLQLSGNNFSSRV 256

Query: 253  PDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP-EFPPSSQLK 311
            PDFL  FSSL+ LHLS CGLYG  P  +FLM +L  LDVS NSNLTG+LP EFP  S+L+
Sbjct: 257  PDFLAKFSSLKTLHLSCCGLYGIFPNSLFLMRTLRSLDVSYNSNLTGTLPAEFPSGSRLE 316

Query: 312  VIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS 371
            VI LS T F G LP SI NL  L+DLE+S C+F GSIPSSF NLTEL  +DF RNNFSG 
Sbjct: 317  VINLSGTMFMGNLPHSIVNLVFLQDLEISQCSFSGSIPSSFENLTELRYLDFGRNNFSGP 376

Query: 372  LPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIE 431
            +PS A S K+  L F  N F+G IPLSY + L  L+VLDLRNNSL+G+IP +L+TK  + 
Sbjct: 377  VPSLALSEKITGLIFFDNHFSGFIPLSYANGLTYLEVLDLRNNSLKGMIPPALFTKPLLW 436

Query: 432  SLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSG 491
             L L QN+ +GQL++FQNASS  LR M  S+N+LQG +P SIF+I+GLNVL LSSN+F+G
Sbjct: 437  RLDLSQNQLNGQLKEFQNASSSLLRVMHLSENELQGPIPVSIFKIRGLNVLGLSSNQFNG 496

Query: 492  FITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTN 551
             I  EM KD  +L TL+LS NNFSF VSG NS +F  IG L L SC + E P FL N  N
Sbjct: 497  TINFEMIKDTNELTTLDLSGNNFSFEVSGVNSTLFSHIGKLGLGSCNLKEIPGFLTNLMN 556

Query: 552  LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSN 611
            LF+LDLSNN+IKGEIP W W +G+  LV+LNLS+NML  F+KP PNL+   L VLDLHSN
Sbjct: 557  LFYLDLSNNKIKGEIPKWIWKLGNENLVYLNLSNNMLSGFDKPIPNLSPGNLVVLDLHSN 616

Query: 612  MLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF 671
            +LQG F +P  SII LDYS N+F++++P  I   + YA F SL+SN+ +G IP S+C ++
Sbjct: 617  LLQGPFLMPSPSIIHLDYSHNQFSSSLPSRIFENLTYASFVSLSSNHFNGEIPFSMCESW 676

Query: 672  DLQVLDLSDNHLTGSIPSCLVSSN-ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH 730
            +L VLDLS NH  GSIP CL +SN  LKVL LRNNE  G +P+     C+LRTLD++QNH
Sbjct: 677  NLFVLDLSKNHFNGSIPECLGNSNSFLKVLNLRNNELHGILPKRFAENCTLRTLDVNQNH 736

Query: 731  LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790
            L G LP+SL+ C  LEVLDVG N LNGSFPFWLETLP LRVL+L+SN + GSI  + +  
Sbjct: 737  LEGPLPRSLANCGDLEVLDVGNNFLNGSFPFWLETLPLLRVLILRSNFFGGSIIYSPSKT 796

Query: 791  AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVT 850
            +F LLQIID++SN F GNL + WF+SW+GM K+ K+SQ SQ+L++ YL L+  YY+DSVT
Sbjct: 797  SFPLLQIIDLASNKFRGNLSSEWFKSWKGMMKQEKKSQSSQVLRYSYLVLTPFYYKDSVT 856

Query: 851  LMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLG 910
            L+NKG +MEL KILTIFTSID+SNN FEGEIPE +GD D L VLN+SNN+  GQIP++ G
Sbjct: 857  LVNKGFNMELEKILTIFTSIDLSNNLFEGEIPEKIGDLDLLYVLNLSNNHLTGQIPSSFG 916

Query: 911  NLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGN 970
             LKELGSLDLS N+LSG IP++L TL FLSVLKLSQNLLVGEIP+G QF TFT+A+FEGN
Sbjct: 917  KLKELGSLDLSENRLSGTIPQQLTTLTFLSVLKLSQNLLVGEIPQGNQFGTFTSAAFEGN 976

Query: 971  AGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVV 1030
             GLCG PL K C +ALPP+E       G+  I DW ++WIGFG G G G+ IG   G V 
Sbjct: 977  IGLCGPPLTKTCSHALPPMEPNADRGNGTWGI-DWNYYWIGFGCGGGMGLNIGFVAGTVA 1035

Query: 1031 SNEII 1035
             N  +
Sbjct: 1036 INIFV 1040

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1031 (49%), Positives = 691/1031 (67%), Gaps = 29/1031 (2%)

Query: 8    WSWKIWFSSFFFGFSLLCILVSGRCL-------EDQKLLLLEFKRGLSFDPQTDSTNKLL 60
            W + +   S  FG  +   LVSG CL       EDQ  LLL+ K  L F+    +++KL+
Sbjct: 8    WLYFLPLCSIVFGIHV--ALVSGECLSDGSICLEDQMSLLLQLKNTLKFN--VAASSKLV 63

Query: 61   SWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLY 120
            SW+ + DCCSW GVT D  TGHV+ LD+SS  I GG N +SS+F LQ LQ LNLADNS  
Sbjct: 64   SWNPSMDCCSWGGVTWD-ATGHVVALDLSSQSIYGGFNNTSSIFSLQYLQSLNLADNSFN 122

Query: 121  SSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAP-IQLRRANL 179
            SS  PSGF +L +L +LNLS +GFSG IP+E+S L  LV++D S   L  P ++L   NL
Sbjct: 123  SSQIPSGFGKLGNLMYLNLSNAGFSGQIPIEVSCLTKLVTIDFSVFYLGVPTLKLENPNL 182

Query: 180  EKLVKNLTNLEELYLGGIDIS--GADWGPILSI-LSNLRILSLPDCHVAGPIHSSLSKLQ 236
              LV+NLT L ELYL G++IS  G +W   LS  + NL++LSLP C+++GP+ SSL KL+
Sbjct: 183  RMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLPSCYLSGPLDSSLQKLR 242

Query: 237  LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSN 296
             L+ + LDGN+ S+ VP+FL NFS+L  L LS CGL G  PEKIF +P+L  LD+S+N  
Sbjct: 243  SLSSIRLDGNNFSAPVPEFLANFSNLTQLRLSSCGLNGTFPEKIFQVPTLQILDLSNNKL 302

Query: 297  LTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLT 356
            L GSLPEFP +  L+ + L +T+FSGK+P+SI NL  L  +EL+ CNF G IP+S  NL 
Sbjct: 303  LLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTANLA 362

Query: 357  ELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSL 416
            +L+ +D S N FSG +P F+ S  +  +  +HN  TG IP S+ D L++L +LDLR+NSL
Sbjct: 363  QLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILDLRDNSL 422

Query: 417  QGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQI 476
             G +P  L++  S++ + L  N+F G L KF    S+ L  +D S N L+G +P SIF +
Sbjct: 423  NGSLPMPLFSLPSLQKIQLSNNQFSGPLSKFSVVPSV-LDTLDLSSNNLEGQIPVSIFDL 481

Query: 477  KGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN--VSGSNSNMFPKIGTLKL 534
            + LN+L LSSNKF+G + L  F+ L  L TL LS NN S N  V      +   + TLKL
Sbjct: 482  QCLNILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKL 541

Query: 535  SSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKP 594
            +SCK+   P+ L  Q+ L +LDLS+N+I G IPNW W +G+  L HLNLSHN+LE  ++P
Sbjct: 542  ASCKLRTLPD-LSTQSRLTYLDLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLLEDLQEP 600

Query: 595  GPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSL 654
              N T   L++LDLHSN L G  P PP    ++DYS+N+FT++IP  IG YI++ +FFSL
Sbjct: 601  LSNFTP-YLSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSL 659

Query: 655  ASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQV 714
            + NN++G IP S+CNA  LQVLD SDNHL+G IPSCL+    L VL LR N F G +P  
Sbjct: 660  SKNNITGSIPRSICNATYLQVLDFSDNHLSGKIPSCLIEYGTLGVLNLRRNNFSGAIPGK 719

Query: 715  IGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVL 774
                C L+TLDLS+NH+ G +P SL+ CT+LEVL++G NQ+NG+FP  L+ +  LRVLVL
Sbjct: 720  FPVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVL 779

Query: 775  QSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES-QIL 833
            + NN+ GSI   ++ + +A+LQI+D++ NNFSG LPA  F +W  M     E Q   + L
Sbjct: 780  RGNNFQGSIGCCKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHL 839

Query: 834  KFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLV 893
            +F  L+ S LYYQD+VT+ +KGL MEL K+LT++TSID+S N F+G+IPE++G+F +L V
Sbjct: 840  QFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYV 899

Query: 894  LNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEI 953
            LN+S+N F G IP+++GNL++L SLDLS N+LSG+IP +LA LNFLSVL LS N LVG I
Sbjct: 900  LNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLVGRI 959

Query: 954  PRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFD--WEFFWIG 1011
            P G Q  TF+  S+EGN  LCG+PL  +C +  PP E    D+  SGS  +  WE+    
Sbjct: 960  PPGNQMQTFSETSYEGNKELCGWPLDLSCTD--PPPE---FDDRHSGSRMEIKWEYIAPE 1014

Query: 1012 FGFGDGTGMVI 1022
             GF  G G+VI
Sbjct: 1015 IGFVTGLGIVI 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1015 (49%), Positives = 670/1015 (66%), Gaps = 27/1015 (2%)

Query: 27   LVSGRCLEDQKLLLLE-------FKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPR 79
            LVSG CL D ++ L +        K  L F+   D++NKL+SW+ + DCCSW GVT D  
Sbjct: 5    LVSGECLSDGRVCLEDEMLLLLQLKSTLKFN--ADASNKLVSWNQSADCCSWGGVTWDA- 61

Query: 80   TGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNL 139
            TGHV+ LD+SS FI+ G   SSS+F LQ LQ LNLA+N+ +SS  PSGFD+L +LT+LNL
Sbjct: 62   TGHVVALDLSSEFISDGFYSSSSIFSLQYLQSLNLANNTFFSSEIPSGFDKLGNLTYLNL 121

Query: 140  SYSGFSGHIPLEISSLKMLVSLDLSAS----GLVAPIQLRRANLEKLVKNLTNLEELYLG 195
            S +GFSG IP+EIS L  LV++D+S+     G  AP +L + NL  LV+NL  L EL+L 
Sbjct: 122  SKAGFSGQIPIEISRLTRLVTIDISSFNDLFGTPAP-KLEQPNLRMLVQNLKELRELHLD 180

Query: 196  GIDIS--GADWGPILSI-LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEV 252
            G+DIS  G +W   LS  + NLR+LSL  C ++GPI SSL KL+ L+ ++L+ N+ ++ V
Sbjct: 181  GVDISAQGKEWCQALSSSVPNLRVLSLSRCFLSGPIDSSLVKLRSLSVVHLNYNNFTAPV 240

Query: 253  PDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKV 312
            PDFL NFS+L  L LS C LYG  PE IF +P+L  LD+S+N  L G+LPEFP    L+ 
Sbjct: 241  PDFLANFSNLTSLSLSFCRLYGTFPENIFQVPALQILDLSNNQLLWGALPEFPQGGSLRT 300

Query: 313  IELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSL 372
            + LS+T+FSG +PDSI  L +L  +EL+ CNF G IPSS  NLT L+ +D S N F+GS+
Sbjct: 301  LVLSDTKFSGHMPDSIGKLEMLSWIELARCNFSGPIPSSIANLTRLLYLDLSSNGFTGSI 360

Query: 373  PSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIES 432
            PSF SS  +  +  + N FTG I   + +  ++L  LDL  N L G +P SL++  S++ 
Sbjct: 361  PSFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLPLSLFSHPSLQK 420

Query: 433  LLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGF 492
            + L QN+F GQL +F   SS  L  +D S N LQG +P S+F ++ L VL LS N  SG 
Sbjct: 421  IQLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGSIPLSVFDLRALRVLELSFNNVSGT 480

Query: 493  ITLEMFKDLRQLGTLELSENNFSFNVSGSNSNM--FPKIGTLKLSSCKITEFPNFLRNQT 550
            + L  F++L  L TL LS N  S NV   NS+    P   TLKL+SC +  FP+   N  
Sbjct: 481  LELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASCNLKRFPDLRNNSK 540

Query: 551  NLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHS 610
             L +LDLS N+I+GEIP+W W +G+  LVHLNLSHN+L   ++P PNL    L  LDLHS
Sbjct: 541  FLGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPFPNLP-PYLFTLDLHS 599

Query: 611  NMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNA 670
            N+L+G  P PP    ++DYS N F ++IP +IG+YI+Y +FFSL+ NN+SG IP S+CNA
Sbjct: 600  NLLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNNISGIIPESICNA 659

Query: 671  FDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH 730
             ++QVLDLSDN L+G IPSCL+ +  L VL LR N F GT+       C L TLDL+ N 
Sbjct: 660  TNVQVLDLSDNALSGEIPSCLIENEALAVLNLRRNMFSGTISGNFPGNCILHTLDLNGNL 719

Query: 731  LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790
            L G++P+S++ C  LEVL++G N+++  FP WL+ +  LRVLVL++N + G I    + +
Sbjct: 720  LEGTIPESVANCKELEVLNLGNNRIDDKFPCWLKNMSSLRVLVLRANRFHGPIGCPNSNS 779

Query: 791  AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES-QILKFVYLELSNLYYQDSV 849
             + +LQI+D++ NNFSG LPA+ F +W+ M     E Q     ++F  LE S LYYQD+V
Sbjct: 780  TWPMLQIVDLAYNNFSGKLPAKGFLTWKAMMASEDEVQSKLNHIQFKILEFSELYYQDAV 839

Query: 850  TLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATL 909
            T+ +KG  MEL K+LT+FTSID S+N+FEG+IPE +G+F +L VLN+S N F GQIP+++
Sbjct: 840  TVTSKGQEMELVKVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLSGNGFTGQIPSSM 899

Query: 910  GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEG 969
            G L++L SLDLS N LSGKIP +L +L FLSVL LS N LVG IP G QF TF+ ASF+ 
Sbjct: 900  GQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDLSFNQLVGAIPSGNQFQTFSEASFQV 959

Query: 970  NAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFD--WEFFWIGFGFGDGTGMVI 1022
            N GLCG PL   C+   PP    T D+  S S  +  WE+     GF  G G+VI
Sbjct: 960  NKGLCGQPLNVNCEEDTPP---PTFDDRHSASRMEIKWEYIAPEIGFVTGLGIVI 1011

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1014 (49%), Positives = 675/1014 (66%), Gaps = 25/1014 (2%)

Query: 25   CILVSGRCLEDQKLLLLEFKRGLSFDP-----QTDSTNKLLSWSSTTDCCSWDGVTCDPR 79
            C  VSG CL D ++ L +    L          T ++NKL+SW  + DCCSW GVT D  
Sbjct: 3    CTSVSGECLSDGRVCLEDEVLLLLQLKSSLIFNTAASNKLVSWIQSADCCSWGGVTWD-A 61

Query: 80   TGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNL 139
            TG V+ LD+SS FI+G +N SSS+F LQ LQ LNLA+N+ +SS  P+ F +L +LT+LNL
Sbjct: 62   TGRVVSLDLSSEFISGELNSSSSIFSLQYLQSLNLANNT-FSSQIPAEFHKLGNLTYLNL 120

Query: 140  SYSGFSGHIPLEISSLKMLVSLDLSASGLVAPI---QLRRANLEKLVKNLTNLEELYLGG 196
            S +GFSG IP+EIS L  LV++DLS+   +  I   +L   NL  LV+NL  L EL+L G
Sbjct: 121  SNAGFSGQIPIEISYLTKLVTIDLSSLYFITGIPKLKLENPNLRMLVQNLKKLRELHLDG 180

Query: 197  IDIS--GADWGPILSI-LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVP 253
            + IS  G +W   LS  + NL++LSL  CH++GPIH SL KLQ L+ + LD N++++ VP
Sbjct: 181  VIISAQGKEWCWALSSSVPNLQVLSLYSCHLSGPIHYSLKKLQSLSRIRLDDNNIAAPVP 240

Query: 254  DFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVI 313
            +FL+NFS+L +L LS CGLYG  PEKIF +P+L  LD+S N  L GSLPEFP    L+ +
Sbjct: 241  EFLSNFSNLTHLQLSSCGLYGTFPEKIFQVPTLQTLDLSYNKLLQGSLPEFPQGGCLETL 300

Query: 314  ELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP 373
             LS T+FSGKLP+SI NL  L  +EL+DC+F G IP+   NLT+L+ +DFS N FSG++P
Sbjct: 301  VLSVTKFSGKLPNSIANLKRLARIELADCDFSGPIPTVMANLTQLVYLDFSHNKFSGAIP 360

Query: 374  SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESL 433
            SF+ S  +  +  +HN+ TG I  S+    ++L  +D   NSL G +P  L++  S++ +
Sbjct: 361  SFSLSKNLTLIDLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKI 420

Query: 434  LLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFI 493
             L  N+F G   +F   SS  +  +D S N L+G +P S+F ++ LN+L LSSNKF+G +
Sbjct: 421  KLNNNQFSGPFGEFPATSSHPMDTLDLSGNNLEGPIPVSLFDLQHLNILDLSSNKFNGTV 480

Query: 494  TLEMFKDLRQLGTLELSENNFSFNVSGSN--SNMFPKIGTLKLSSCKITEFPNFLRNQTN 551
             L  F+ L  L TL LS NN S N S SN  S + P + TLKL+SCK+   P+ L +Q+ 
Sbjct: 481  ELSQFQKLGNLTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKLRTLPD-LSSQSM 539

Query: 552  LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSN 611
            L  LDLS N+I G+IPNW W +G+G L HLNLSHN+LE  ++P  NL    L+ LDLHSN
Sbjct: 540  LVILDLSQNQIPGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEPLSNLP-PFLSTLDLHSN 598

Query: 612  MLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF 671
             L+G  P PP+S  ++DYS N+FT++IP +IG Y+N  VFFSL+ NN++G IP S+CNA 
Sbjct: 599  QLRGPIPTPPSS-TYVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITGIIPASICNAH 657

Query: 672  DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
             LQVLD SDN L+G IPSCL+ +  L VL LR N+F GT+P      C L+TLDL+ N L
Sbjct: 658  YLQVLDFSDNSLSGKIPSCLIENGDLAVLNLRRNKFKGTIPGEFPGHCLLQTLDLNGNLL 717

Query: 732  AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
             G +P+SL+ C +LEVL++G N++N  FP WL+ +  LRVLVL++N + G I    + + 
Sbjct: 718  EGKIPESLANCKALEVLNLGNNRMNDIFPCWLKNISSLRVLVLRANKFHGPIGCPNSNST 777

Query: 792  FALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQ-ESQILKFVYLELSNLYYQDSVT 850
            + +LQI+D++ NNFSG LP + F +WR M     + Q +S  L+F  L  S LYYQD+VT
Sbjct: 778  WPMLQIVDLAWNNFSGVLPEKCFSNWRAMMAGEDDVQSKSNHLRFKVLAFSQLYYQDAVT 837

Query: 851  LMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLG 910
            + +KG  MEL K+LT+FTSID S N F+G+IPE +GD   L VLN+S N F GQIP++LG
Sbjct: 838  VTSKGQEMELVKVLTLFTSIDFSCNNFQGDIPEDIGDLKLLYVLNLSGNGFTGQIPSSLG 897

Query: 911  NLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGN 970
             L++L SLDLS N+LSG+IP +L++LNFLSVL LS N LVG IP G Q  TF+  SF GN
Sbjct: 898  QLRQLESLDLSLNKLSGEIPAQLSSLNFLSVLNLSFNGLVGRIPTGNQLQTFSENSFAGN 957

Query: 971  AGLCGFPLPKACQNALPPVEQTTKDEEGSGS--IFDWEFFWIGFGFGDGTGMVI 1022
             GLCGFPL  +C++A PP    T D   SGS     W++     GF  G G+VI
Sbjct: 958  RGLCGFPLNVSCEDATPP----TFDGRHSGSRIAIKWDYIAPEIGFVTGLGIVI 1007

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1039 (48%), Positives = 694/1039 (66%), Gaps = 23/1039 (2%)

Query: 1    MGNPLPFWSWKIWFSSFFFGFSLLCILVSGRCL-------EDQKLLLLEFKRGLSFDPQT 53
            MG  L   +  + FSSF F F +   LVSG CL       ED+K +LL+ K  L F  ++
Sbjct: 51   MGVHLGEATGTLIFSSFLFLFRIHIALVSGECLGGSRLCLEDEKSMLLQLKNSLKF--KS 108

Query: 54   DSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLN 113
            + + KL++W+ +  CCSW+GVT D   GHV+GLD+SS  I+GG N SSSLF L+ LQ LN
Sbjct: 109  NVSMKLVTWNESVGCCSWEGVTWD-SNGHVVGLDLSSELISGGFNSSSSLFSLRHLQRLN 167

Query: 114  LADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGL--VAP 171
            LA+NS  SS  PSGFD+L +LT+LNLS +GF G IP+EIS L  LV++D S      V  
Sbjct: 168  LANNSFNSSQIPSGFDKLGNLTYLNLSATGFYGQIPIEISRLTRLVTIDFSILYFPGVPT 227

Query: 172  IQLRRANLEKLVKNLTNLEELYLGGIDIS--GADWGPILSI-LSNLRILSLPDCHVAGPI 228
            ++L   NL  LV+NL  L ELYL G++IS  G +W   LS  + NL++LSLP C+++GP+
Sbjct: 228  LKLENPNLRMLVQNLAELRELYLNGVNISAQGKEWCRALSSSVPNLQVLSLPSCYLSGPL 287

Query: 229  HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCF 288
             SSL KL+ L+ + LD N+ S+ VP+FL NFS+L  L LS CGLYG  PEKIF +P+L  
Sbjct: 288  DSSLQKLRSLSSIRLDSNNFSAPVPEFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQI 347

Query: 289  LDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI 348
            LD+S+N  L GSLPEFP +  L+ + L +T+FSGK+P+SI NL  L  +EL+ CNF G I
Sbjct: 348  LDLSNNKLLLGSLPEFPQNGSLETLVLPDTKFSGKVPNSIGNLKRLTRIELARCNFSGPI 407

Query: 349  PSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQV 408
            P+S  NL  L+ +D S N FSG +P F+ S  +  +  +HN  TG IP S+ D L++L  
Sbjct: 408  PNSTANLARLVYLDLSENKFSGPIPPFSLSKNLTRINLSHNHLTGPIPSSHLDGLVNLVT 467

Query: 409  LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL 468
            LDL  NSL G +P  L++  S++ + L  N+F G L KF    S+ L  +D S N L+G 
Sbjct: 468  LDLSKNSLNGSLPMPLFSLPSLQKIQLSNNQFSGPLSKFSVVPSV-LDTLDLSSNNLEGQ 526

Query: 469  VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN--VSGSNSNMF 526
            +P SIF ++ L++L LSSNKF+G + L  F+ L  L TL LS NN S N  V      + 
Sbjct: 527  IPVSIFDLQCLSILDLSSNKFNGTVLLSSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLL 586

Query: 527  PKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
              + TLKL+SCK+   P+ L  Q+ L +LDLS+N+I G IPNW   +G+G L+HLNLSHN
Sbjct: 587  LNLTTLKLASCKLRTLPD-LSTQSRLTYLDLSDNQIPGSIPNWIRKIGNGSLLHLNLSHN 645

Query: 587  MLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYI 646
            +LE  ++   N T + L++LDLHSN L G  P PP    ++DYS+N+FT++IP  IG YI
Sbjct: 646  LLEDLQETFSNFTPS-LSILDLHSNQLHGQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYI 704

Query: 647  NYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNE 706
            ++ +FFSL+ NN++G IP S+CNA  LQVLD S+N+L+G IPSCL+    L VL LR N 
Sbjct: 705  SFTIFFSLSKNNITGSIPRSICNATYLQVLDFSNNNLSGKIPSCLIEYGTLGVLNLRRNN 764

Query: 707  FLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETL 766
            F G +P      C L+TLDLS+NH+ G +P SL+ CT+LEVL++G NQ+NG+FP  L+ +
Sbjct: 765  FSGAIPGKFPVNCLLQTLDLSRNHIEGKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNI 824

Query: 767  PQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKE 826
              LRVLVL+ NN+ GSI   ++ + +A+LQI+D++ NNFSG LPA  F +W  M     E
Sbjct: 825  TTLRVLVLRGNNFQGSIGCRKSNSTWAMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENE 884

Query: 827  SQES-QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEML 885
             Q   + L+F  L+ S LYYQD+VT+ +KGL MEL K+LT++TSID+S N F+G+IPE++
Sbjct: 885  VQSKLKHLQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVM 944

Query: 886  GDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLS 945
            G+F +L VLN+S+N F G IP+++GNL++L SLDLS N+LSG+IP +LA LNFLSVL LS
Sbjct: 945  GNFTSLYVLNLSHNGFTGHIPSSIGNLRQLESLDLSRNRLSGEIPTQLANLNFLSVLNLS 1004

Query: 946  QNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEE-GSGSIFD 1004
             N LVG IP G Q  TF+  S+EGN  LCG+PL   C +  P  ++  +D+       FD
Sbjct: 1005 FNQLVGRIPPGNQMQTFSETSYEGNKELCGWPLIN-CTDPPPTQDKRFQDKRFQDKEEFD 1063

Query: 1005 WEFFWIGFGFGDGTGMVIG 1023
            WEF   G GFG G G+++ 
Sbjct: 1064 WEFIITGLGFGVGAGIIVA 1082

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481296|ref|XP_003632603.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1061 (47%), Positives = 692/1061 (65%), Gaps = 25/1061 (2%)

Query: 8    WSWKIWFSSFFFGFSLLCILVSGRCL-------EDQKLLLLEFKRGLSFDPQTDSTNKLL 60
            W + +   S  FG  +   LVSG CL       EDQ  LLL+ K  L F+    +++KL+
Sbjct: 8    WLYFLPLCSIVFGIHV--ALVSGECLSDGSICLEDQMSLLLQLKNTLKFN--VAASSKLV 63

Query: 61   SWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLY 120
            SW+ +TDCCSW GVT D  TGHV+ LD+SS  I GG N SSS+F LQ LQ LNLA+N+ Y
Sbjct: 64   SWNPSTDCCSWGGVTWD-ATGHVVALDLSSQSIYGGFNNSSSIFSLQYLQSLNLANNTFY 122

Query: 121  SSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGL--VAPIQLRRAN 178
            SS  PSGF +L  L +LNLS +GFSG IP+EIS L  LV++D S   L  V  + L   N
Sbjct: 123  SSQIPSGFSKLDHLIYLNLSNAGFSGQIPIEISCLTKLVTIDFSVFYLPGVPTLTLENPN 182

Query: 179  LEKLVKNLTNLEELYLGGIDIS--GADWGPILSI-LSNLRILSLPDCHVAGPIHSSLSKL 235
            L  LV+NLT L ELYL G++IS  G +W   LS  + NL++LSL  C++ GP+ SSL KL
Sbjct: 183  LRMLVQNLTELRELYLNGVNISAQGKEWCQALSSSVPNLQVLSLASCYLYGPLDSSLQKL 242

Query: 236  QLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNS 295
            + L+ + LD N+ S+ V +FL NFS+L  L LS CGLYG  PEKIF +P+L  LD+S+N 
Sbjct: 243  RSLSSIRLDSNNFSAPVLEFLANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSNNK 302

Query: 296  NLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNL 355
             L GSLPEFP +  L  + LS+T+FSGK+P SI NL  L  +EL+ C+F G+IP+S  +L
Sbjct: 303  LLLGSLPEFPQNGSLGTLVLSDTKFSGKVPYSIGNLKRLTRIELAGCDFSGAIPNSMADL 362

Query: 356  TELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNS 415
            T+L+ +D S N FSG +P F+ S  +  +  +HN  TG IP S+ D L++L  LDLR+NS
Sbjct: 363  TQLVYLDSSYNKFSGPIPPFSLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVTLDLRDNS 422

Query: 416  LQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQ 475
            L G +P  L++  S++ + L  N+F G L KF       L  +D S N L+G +P S+F 
Sbjct: 423  LNGSLPMLLFSLPSLQKIQLSNNQFSGPLSKFSVVPFSVLETLDLSSNNLEGPIPISVFD 482

Query: 476  IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN--VSGSNSNMFPKIGTLK 533
            ++ LN+L LSSNKF+G + L  F++L  L TL LS NN S N  V      +   + TLK
Sbjct: 483  LQCLNILDLSSNKFNGTVLLSSFQNLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLK 542

Query: 534  LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
            L+SCK+   P+ L  Q+ L HLDLS+N+I G IPNW W  G+G L+HLNLSHN+LE  ++
Sbjct: 543  LASCKLRTLPD-LSTQSRLTHLDLSDNQIPGSIPNWIWKNGNGSLLHLNLSHNLLEDLQE 601

Query: 594  PGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFS 653
               N T   L++LDLHSN L G  P PP   I++DYS+N F ++IP +IG YI++ +FFS
Sbjct: 602  TFSNFT-PYLSILDLHSNQLHGQIPTPPQFSIYVDYSDNSFNSSIPDDIGIYISFTLFFS 660

Query: 654  LASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ 713
            L+ NN++G IP S+CNA  LQVLD SDN  +G IPSCL+ +  L VL L  N+F GT+P 
Sbjct: 661  LSKNNITGVIPESICNASYLQVLDFSDNAFSGKIPSCLIQNEALAVLNLGRNKFNGTIPG 720

Query: 714  VIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLV 773
               ++C L+TLDL++N L G++ +SL+ C  LE+L++G NQ++  FP WL+ +  LRVLV
Sbjct: 721  EFRHKCLLQTLDLNENLLEGNITESLANCKELEILNLGNNQIDDIFPCWLKNITNLRVLV 780

Query: 774  LQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES-QI 832
            L+ N + G I   ++ + +A+LQI+D++ NNFSG LP + F +W  M     E Q   + 
Sbjct: 781  LRGNKFHGPIGCLRSNSTWAMLQIVDLADNNFSGKLPEKCFSTWTAMMAGENEVQSKLKH 840

Query: 833  LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
            L+F  L+ S LYYQD+VT+ +KGL MEL K+LT++TSID+S N F+G+IPE++G+F +L 
Sbjct: 841  LQFRVLQFSQLYYQDAVTVTSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLY 900

Query: 893  VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGE 952
             LN+S+N F G IP+++GNL++L SLDLS N+LSG+IP +LA LNFLSVL LS N LVG 
Sbjct: 901  GLNLSHNGFTGHIPSSIGNLRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLVGR 960

Query: 953  IPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFD--WEFFWI 1010
            IP G Q  TF+ AS+EGN  LCG+PL  +C +  P   +   D+  SGS  +  WE+   
Sbjct: 961  IPPGNQMQTFSEASYEGNKELCGWPLDLSCTDPPPSQGKEEFDDRHSGSRMEIKWEYIAP 1020

Query: 1011 GFGFGDGTGMVI-GITLGVVVSNEIIKKKGKVHRSISSGHA 1050
              GF  G G+VI  + L         K   ++H  I  G A
Sbjct: 1021 EIGFVTGLGIVIWPLVLCRRWRKCYYKHVDRIHSRILQGRA 1061

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/993 (48%), Positives = 663/993 (66%), Gaps = 17/993 (1%)

Query: 39   LLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGIN 98
            LLL+ K  L  +    +++KL+SW+ + DCCSW GVT D  +GHV+ LD+SS  I+GG N
Sbjct: 3    LLLQLKSTLKHN--VAASSKLVSWNPSGDCCSWGGVTWD-SSGHVVELDLSSELISGGFN 59

Query: 99   GSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKML 158
             SSSLF LQ LQ LNLA+NS  +S  PSGF +L +L +LNLS +GFSG IP+EIS L  L
Sbjct: 60   SSSSLFSLQHLQRLNLANNSFNASQIPSGFGKLGNLIYLNLSSAGFSGQIPIEISRLTRL 119

Query: 159  VSLDLSASGLVA--PIQLRRANLEKLVKNLTNLEELYLGGIDIS--GADWGPILSI-LSN 213
            V++D S    +    ++L   NL KL++NL  L EL+L G++IS  G +W   LS  + N
Sbjct: 120  VTIDFSILYFLGLPTLKLENPNLRKLLQNLRELRELHLNGVNISAEGKEWCQXLSSSVPN 179

Query: 214  LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLY 273
            L++LS+P+C+++GP+ SSL KL+ L+ + LD N  S+ VP+FL NF +L  L LS CGL+
Sbjct: 180  LQVLSMPNCYLSGPLDSSLQKLRSLSSIRLDNNXFSAPVPEFLANFLNLTLLRLSSCGLH 239

Query: 274  GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLAL 333
            G  PEKIF +P+L  LD+S+B  L GSLP+FP +  L  + LS+T+FSGK+P SI NL  
Sbjct: 240  GTFPEKIFQVPTLQXLDLSNBKLLQGSLPKFPQNGSLGTLVLSDTKFSGKVPYSIGNLKX 299

Query: 334  LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTG 393
            L  +EL+ C+F G IP+S  +LT+L+ +D S N FSGS+P F+ S  +  +  +HN  TG
Sbjct: 300  LTRIELAGCDFSGPIPNSMADLTQLVYLDLSNNKFSGSIPPFSLSKNLTRINLSHNYLTG 359

Query: 394  TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL 453
             I  S+ D L++L  LDLR+NSL G +P  L++  S++ + L  NKF G L KF      
Sbjct: 360  PISSSHWDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQLSNNKFSGPLSKFSVVPFS 419

Query: 454  SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
             L  +D S N L+G +P S+F +  LN+L LSSNKF+G + L  F+ L  L TL LS N 
Sbjct: 420  VLETLDSSSNNLEGPIPVSVFDLHCLNILDLSSNKFNGTVELSSFQKLGNLSTLSLSYNF 479

Query: 514  FSFNVSGSN--SNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTW 571
             S N S  N  S +   + TLKL+SCK+   P+ L  Q+ L HLDLS+N+I+G IPNW W
Sbjct: 480  LSTNASVGNPTSPLLSNLTTLKLASCKLXTLPD-LSTQSRLTHLDLSDNQIRGSIPNWIW 538

Query: 572  NVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSE 631
             +G+G L+HLNLSHN+LE  ++   N T   L++LDLHSN L G  P PP    ++DYS 
Sbjct: 539  KIGNGSLMHLNLSHNLLEDLQETFSNFT-PYLSILDLHSNQLHGQIPTPPQFSKYVDYSN 597

Query: 632  NKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCL 691
            N F ++IP +IG Y+++ +FFSL  NN++G IP S+CNA  LQVLD SDN  +G IPSCL
Sbjct: 598  NSFNSSIPDDIGTYMSFTIFFSLXKNNITGSIPRSICNATYLQVLDFSDNAFSGEIPSCL 657

Query: 692  VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751
            + +  L VL L  N+F+GT+   + ++C LRTLDLS+N L G++P+SL  C  LE+L++G
Sbjct: 658  IQNEALAVLNLGRNKFVGTIXGELXHKCLLRTLDLSENLLQGNIPESLVNCKELEILNLG 717

Query: 752  KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPA 811
             NQ++  FP WL+ +  LRVLVL++N + G+I   ++ + +A LQI D++ NNFSG LPA
Sbjct: 718  NNQIDDIFPCWLKNISSLRVLVLRANKFHGTIGCPKSNSTWATLQIFDLAFNNFSGKLPA 777

Query: 812  RWFQSWRGMKKRTKESQES-QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSI 870
            +   +W  +     E Q   +IL+F   +   LYYQD+V +++KG  MEL KILT+FTSI
Sbjct: 778  KCLSTWTAIMAGENEVQSKLKILQFRVPQFGQLYYQDTVRVISKGQEMELVKILTLFTSI 837

Query: 871  DVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIP 930
            D S N FEGEIPE++G+  +L VLN+S+N F GQIP+++G L++L SLDLS N+LSG+IP
Sbjct: 838  DWSYNNFEGEIPEVIGNLTSLYVLNLSHNGFTGQIPSSIGKLRQLESLDLSQNRLSGEIP 897

Query: 931  EKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVE 990
             +LA LNFLSVL LS N LVG IP G Q  TF+  SF GN GLCGFP+  +C++A PP  
Sbjct: 898  TQLANLNFLSVLNLSFNQLVGRIPPGNQLQTFSPNSFVGNRGLCGFPVNVSCEDATPP-- 955

Query: 991  QTTKD-EEGSGSIFDWEFFWIGFGFGDGTGMVI 1022
             T+ D   GSG    WE      GF  G G+VI
Sbjct: 956  -TSDDGHSGSGMEIKWECIAPEIGFVTGLGIVI 987

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|214011438|gb|ACJ61469.1| GbVe [Gossypium barbadense]

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1027 (46%), Positives = 671/1027 (65%), Gaps = 22/1027 (2%)

Query: 6    PFWSWKIWFSSFFFG--FSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWS 63
            PF SW I+F++F     F++  +LVSG+C  DQ  LLLE K   +    + S  KL  W+
Sbjct: 5    PF-SW-IFFNAFLVAAFFTIHLVLVSGQCQRDQGQLLLELKSSFN----STSLGKLQKWN 58

Query: 64   STTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSP 123
             TTDCC WDGVTCD  +G VIGLD+S+  I+G I+ SS LF  Q LQ LNLA N L ++ 
Sbjct: 59   QTTDCCFWDGVTCDA-SGRVIGLDLSNQSISGAIDDSSGLFRFQHLQQLNLAYNRLMAT- 116

Query: 124  FPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVA-PIQLRRANLEKL 182
            FP+GFD+L +L++LNLS +GF+G IP  IS +  LV+LDLS S L+   + L +  LE L
Sbjct: 117  FPTGFDKLENLSYLNLSNAGFTGQIPAVISRMTRLVTLDLSVSSLLGRSLTLEKPKLEML 176

Query: 183  VKNLTNLEELYLGGIDI--SGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTH 240
            V+NLT L+ L+L G++I  +G +W   LS L++L++LS+ +C+++GPI SS+SKL+ L+ 
Sbjct: 177  VQNLTKLKFLHLDGVNIRATGNEWCRALSSLTDLQVLSMSNCNLSGPIDSSISKLRSLSV 236

Query: 241  LNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGS 300
            + LD N+LS+ VP+F   F +L  LHLS  GL G +P ++  +P+L  LD+S+N  L GS
Sbjct: 237  IRLDNNNLSTSVPEFFAEFPNLTSLHLSTSGLRGGLPAEVLKIPTLQILDLSNNELLEGS 296

Query: 301  LPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELIN 360
              EFP +  L+ + LS T+F G++PDSI NL  L  +EL+ CNF G IP +   LT+L+ 
Sbjct: 297  FQEFPSNGSLQTLTLSGTKFGGQVPDSIGNLGQLTRIELASCNFSGPIPKAVKKLTQLVY 356

Query: 361  IDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGII 420
            +DFS N+FSG +PSF+SS  +  L  A+N   GTI  +    L +L  +DLRNN L G I
Sbjct: 357  LDFSSNSFSGPIPSFSSSRNLTQLNLAYNRLNGTIHSTDWSVLSNLVSIDLRNNKLSGTI 416

Query: 421  PKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLN 480
            P +L+   S++ + L QN+F+G L   +  ++L L  +D S N LQG  P  +F+++GL 
Sbjct: 417  PPTLFGIPSLQKISLSQNRFNGSLGDLRGKTTLLLDTLDLSSNMLQGQFPMFVFELQGLK 476

Query: 481  VLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNM--FPKIGTLKLSSCK 538
            +L +SSNKFSGFI     + LR L  L+LS NN S + + +NS +  FP I TLKL+SC 
Sbjct: 477  ILTISSNKFSGFIQWTDIQKLRNLSNLDLSYNNLSIDATSTNSALSTFPNITTLKLASCN 536

Query: 539  ITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNL 598
            + +FP FL+ Q  L HLDLS N++ GEIPNW W + +  L +LNLS N L  FE P  ++
Sbjct: 537  LKKFPGFLKTQVKLNHLDLSKNQMSGEIPNWVWEIKN--LAYLNLSQNSLMKFEGPFLSI 594

Query: 599  TSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNN 658
            TST L V+DLH N LQG     P    +LDYS N F++ +P +IG+++ +A FFS++ NN
Sbjct: 595  TST-LTVVDLHGNQLQGQIDRLPQYATYLDYSRNNFSSVLPRDIGDFLQFAYFFSISDNN 653

Query: 659  LSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-LKVLKLRNNEFLGTVPQVIGN 717
              G IP S+C +  LQVLDLS+N L+GSIP CL+  ++ L VL LR N   G +      
Sbjct: 654  FHGSIPESICKSSYLQVLDLSNNSLSGSIPECLIQMSVSLGVLNLRRNNLTGNISDTFPE 713

Query: 718  ECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSN 777
             C L+TL L++N L G +PKSL  C  LEVLD+G NQ+N +FP  L+ +  LRVLVL+ N
Sbjct: 714  NCLLQTLVLNRNLLRGKVPKSLVSCKMLEVLDLGNNQINDTFPCHLKNISSLRVLVLRGN 773

Query: 778  NYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKES-QESQILKFV 836
             ++G++  ++ +  + +LQI+D+SSN+FSG L      +W+ M+    E+  E   L+F 
Sbjct: 774  KFNGNVHCSERS-PWPMLQIVDLSSNSFSGRLHEACLSTWKAMRAAESETLSELNHLQFK 832

Query: 837  YLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNM 896
             L+L+  YYQD++T+  KGL +EL KILT+FTSID+S N FEG IPE++G F AL VLN 
Sbjct: 833  VLKLNQFYYQDAITVTMKGLELELLKILTVFTSIDISRNNFEGPIPEVIGTFKALYVLNF 892

Query: 897  SNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
            S+N F G IP +LGNL +L SLDLS N   G+IP +LA LNF+S L +S N L G+IPR 
Sbjct: 893  SHNAFTGSIPPSLGNLSQLESLDLSSNSFDGEIPIQLANLNFISFLNVSNNKLEGQIPRS 952

Query: 957  PQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGD 1016
             Q  +F+ ASFE N GLCG PL   C N   P  +TT++ + +   FDW+F +IG GFG 
Sbjct: 953  TQIQSFSEASFENNKGLCGLPLTTDCVNGTSPKPRTTQEFQPADE-FDWQFIFIGVGFGV 1011

Query: 1017 GTGMVIG 1023
            G  + + 
Sbjct: 1012 GAALFVA 1018

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/1025 (47%), Positives = 657/1025 (64%), Gaps = 25/1025 (2%)

Query: 8    WSWKIWFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTD 67
            W + I F + FFG ++   LVSG+C +DQ+ LLL+ K  L FD    +  KL+ W+ST D
Sbjct: 3    WLFLIPFLTIFFGVNV--CLVSGQCRKDQQSLLLQLKNTLVFDQSVSA--KLVKWNSTPD 58

Query: 68   CCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSG 127
            CC W G+TCD  +G VI LD+SS  ITGG+  SS L+ LQ LQ LNL+ NS +S+  P G
Sbjct: 59   CCDWPGITCDEGSGRVISLDLSSERITGGLGDSSGLYRLQFLQSLNLSFNS-FSTALPVG 117

Query: 128  FDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVA--PIQLRRANLEKLVKN 185
            F  L  L  LNLS +GF+G IP + S L  LVSLDLSA        ++L + N   LV+N
Sbjct: 118  FANLTDLISLNLSNAGFTGQIPNDFSKLTKLVSLDLSALSFPGSPALKLEQPNFATLVQN 177

Query: 186  LTNLEELYLGGIDIS--GADWGPIL-SILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLN 242
            LT+L EL L G++IS  G DW   L S L NL++LS+ +C+++GP+ +SL+KLQ L+ + 
Sbjct: 178  LTHLTELLLDGVNISAHGNDWCKALSSSLPNLKVLSMSNCYLSGPLDASLAKLQSLSIIR 237

Query: 243  LDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP 302
            L GN+LS+ VP+FL N+S L  L LS C L G  P+ IF +P+L  LD+  N  L GS P
Sbjct: 238  LSGNNLSTPVPEFLANYSKLTALQLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGSFP 297

Query: 303  EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINID 362
            EF  +  L+ + LS T FSG LP SI  L  L  +EL+  NF G IP+S  NLT+L  +D
Sbjct: 298  EFHQNLSLRTLLLSNTNFSGTLPQSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLD 357

Query: 363  FSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPK 422
               N F+G+LPSF  S  +  +  +HN   G IP  + + L SL  +DL  N+  G IP 
Sbjct: 358  LLSNKFTGTLPSFRKSKNLTYVDVSHNQLKGEIPSGHWEGLRSLTYVDLGYNAFNGSIPS 417

Query: 423  SLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVL 482
            SL+   S++ + L  N+F GQ+ +F N SS  L  +D S NKL+G +P S+F +  LNVL
Sbjct: 418  SLFAIPSLQKIQLSNNRFGGQIPEFPNVSSSLLDTLDLSSNKLEGPIPSSVFGLAKLNVL 477

Query: 483  RLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN--VSGSNSNMFPKIGTLKLSSCKIT 540
             LSSN  +  + L   + L  L TL LS NN +       SN +  P+I  L+L+SC + 
Sbjct: 478  ELSSNMLNDTLQLHWIQKLPNLTTLGLSYNNLTVKSSGGNSNMSSLPQIKKLRLASCDLG 537

Query: 541  EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTS 600
             FP+ LRNQ+ LFHLDLS+N+I G +P W   +    L +LNLS N+L   E+P   L+ 
Sbjct: 538  MFPD-LRNQSKLFHLDLSDNQITGPVPGWISEL--ILLQYLNLSRNLLVDLERP---LSL 591

Query: 601  TVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLS 660
              L++LDLH N LQGS P+PP+ I ++DYS NKF++ IP NIGNY N+ +FFSL++N+L+
Sbjct: 592  PGLSILDLHHNQLQGSIPVPPSYITYVDYSSNKFSSFIPPNIGNYFNFTLFFSLSNNHLT 651

Query: 661  GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSS-NILKVLKLRNNEFLGTVPQVIGNEC 719
            G IP S+CN   LQVLDLS+N L+G+IPSCL+     L+VL LR N F G +P      C
Sbjct: 652  GEIPQSICNTEWLQVLDLSNNSLSGAIPSCLIDKIKTLRVLNLRRNNFDGIIPDKFPRSC 711

Query: 720  SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY 779
             L+TLDLS N+L G +PKSL+ CT LEVLD+G NQ+N SFP  L+++   RVLVL++N +
Sbjct: 712  ELKTLDLSGNNLQGQVPKSLANCTMLEVLDLGNNQINDSFPCLLKSISSFRVLVLRNNMF 771

Query: 780  DGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLE 839
             G I   Q    +  LQI+D++ N+F GNL     ++W GM +    S +   +++  L+
Sbjct: 772  SGHIGCPQIEGTWPRLQIVDLAFNHFIGNLSDICLKTWEGMMEGGNRSLDH--IRYDPLQ 829

Query: 840  LSN-LYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSN 898
            L+N LYYQDS+T+  KGL +EL KILT+FTS D S+N FEG IP+ +G F+AL VLN+S+
Sbjct: 830  LTNGLYYQDSITVTVKGLELELVKILTVFTSADFSSNNFEGPIPDAIGKFNALYVLNLSH 889

Query: 899  NNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQ 958
            N   GQIP++LGNL +L SLDLS NQLSG+IP +L +L FLSVL LS N LVG IP G Q
Sbjct: 890  NVLTGQIPSSLGNLSQLESLDLSSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPTGNQ 949

Query: 959  FATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGT 1018
            F TF++ SFEGN GLCG PL  AC N     E  +         FDW+F   G GFG G+
Sbjct: 950  FLTFSSDSFEGNQGLCGPPLKLACSNT---NESNSTRGSNQRKEFDWQFIVPGLGFGLGS 1006

Query: 1019 GMVIG 1023
            G+V+ 
Sbjct: 1007 GIVVA 1011

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506579|ref|XP_003522057.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Glycine max]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1005 (46%), Positives = 645/1005 (64%), Gaps = 25/1005 (2%)

Query: 13   WFSSFFFGFSLLCILVSGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWD 72
            +F       S+   + +G+CLEDQ+LLL + K  L+F+P+  S  KL  W+ + +CC W 
Sbjct: 11   FFLCHLIYLSIYISVTAGKCLEDQQLLLFQLKSNLTFNPENSS--KLRLWNQSVECCDWS 68

Query: 73   GVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLF 132
            GV+CD   G VIGLD+   FI+GG + SS +F LQ LQ LNLA N+ ++S  PSGF++L 
Sbjct: 69   GVSCDDE-GRVIGLDLGGEFISGGFDDSSVIFSLQHLQELNLASNN-FNSVIPSGFNKLD 126

Query: 133  SLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVA--PIQLRRANLEKLVKNLTNLE 190
             LT+LNLSY+GF G IP+EIS L  LV+LD+S    +    ++L   NL+KLV+NLT++ 
Sbjct: 127  KLTYLNLSYAGFVGQIPIEISQLTRLVTLDISCLSYLTGQELKLENPNLQKLVQNLTSIR 186

Query: 191  ELYLGGIDIS--GADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDL 248
            +LYL G+ I   G +W     +L +L+ LS+  C+++GP+  SL+ L+ L+ + LD N+L
Sbjct: 187  QLYLDGVSIKVPGHEWCSAFLLLRDLQELSMSHCNLSGPLDPSLATLKNLSVIVLDQNNL 246

Query: 249  SSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSS 308
            SS VPD  ++  +L  L L  CGL+G  P+ I  + SL  +D+S N NL G  P+FP + 
Sbjct: 247  SSPVPDTFSHLKNLTILSLVYCGLHGTFPQGILSIGSLSVIDISFNYNLQGVFPDFPRNG 306

Query: 309  QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNF 368
             L+++ +S T FSG  P+SI N+  L +L+ S C F G++P+S  NLTEL  +D S NNF
Sbjct: 307  SLQILRVSNTSFSGAFPNSIGNMRNLFELDFSYCQFNGTLPNSLSNLTELSYLDLSFNNF 366

Query: 369  SGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQ 428
            +G +PS   +  +  L  +HN  +G IP S+ + L +L  + L  NS+ G IP SL+T  
Sbjct: 367  TGQMPSLGRAKNLTHLDLSHNGLSGAIPSSHFEGLDNLVSIGLGYNSINGSIPSSLFTLT 426

Query: 429  SIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNK 488
             ++ +LL  N+F GQL++  N SS  L  +D S N+L G  P  I Q++ L++L+LSSNK
Sbjct: 427  RLQRILLSYNQF-GQLDEVTNVSSSKLNTLDLSSNRLSGSFPTFILQLEALSILQLSSNK 485

Query: 489  FSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN--SNMFPKIGTLKLSSCKITEFPNFL 546
            F+G + L+    LR L TL+LS NN S  V+ +N  S+ FP I  LKL+SC +  FP FL
Sbjct: 486  FNGSMHLDNILVLRNLTTLDLSYNNLSVKVNVTNVGSSSFPSISNLKLASCNLKTFPGFL 545

Query: 547  RNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVL 606
            RNQ+ L  LDLS+N I+G +PNW W +    L  LN+SHN+L   E P  NL+S +L  L
Sbjct: 546  RNQSRLTTLDLSDNHIQGTVPNWIWKL--QTLESLNISHNLLTHLEGPFQNLSSHLL-YL 602

Query: 607  DLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLS 666
            DLH N LQG  P+ P ++++LD S NKF++ IP + GNY+++  F SL++N LSG IP S
Sbjct: 603  DLHQNKLQGPIPVFPRNMLYLDLSSNKFSSIIPRDFGNYMSFTFFLSLSNNTLSGSIPDS 662

Query: 667  LCNAFDLQVLDLSDNHLTGSIPSCLVS-SNILKVLKLRNNEFLGTVPQVIGNECSLRTLD 725
            LCNA  L+VLDLS+N+ +G+IPSCL++ S  L VL LR N   G +P      C+LRTLD
Sbjct: 663  LCNALYLEVLDLSNNNFSGTIPSCLMTVSENLGVLNLRKNNLTGLIPDKFSASCALRTLD 722

Query: 726  LSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKD 785
            L  N L G +PKSLS CT+LEVLD GKN++   FP  L+ +  LRVLVL+ N + G I  
Sbjct: 723  LHHNKLDGKIPKSLSNCTTLEVLDFGKNEIKDVFPCLLKNITTLRVLVLRQNKFYGQIGC 782

Query: 786  TQTANAFALLQIIDISSNNFSGNLPARWFQSWRGM--KKRTKESQESQILKFVYLEL-SN 842
             +T   +  LQI+D++ NNF+G LPA  F  W  M   +   ES+   I ++ +L+  S 
Sbjct: 783  PKTNGTWHRLQIVDLAINNFNGKLPANCFTRWEAMMSDENLAESKAHHI-QYQFLQFGSQ 841

Query: 843  LYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFK 902
            +YYQDSVT+  KG  M+L KILT+FTSID S+N FEGEIP+ L DF AL +LN+SNN F 
Sbjct: 842  IYYQDSVTVTIKGNRMDLVKILTVFTSIDFSSNHFEGEIPKELFDFKALYILNLSNNAFS 901

Query: 903  GQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATF 962
            GQIP ++GNL EL SLDLS+N L G IP +LAT++FLS L LS N L G+IP G Q  +F
Sbjct: 902  GQIPPSIGNLMELESLDLSNNSLEGNIPTELATVSFLSFLNLSLNHLFGKIPTGTQIQSF 961

Query: 963  TAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEF 1007
               SF GN GLCG PL   C +   P    +  E      +DW++
Sbjct: 962  QETSFIGNKGLCGPPLTANCTSNTSPATTESVVE------YDWKY 1000

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1055
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.741	0.829	0.363	4.6e-112
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.744	0.820	0.354	3.4e-109
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.681	0.821	0.369	8.3e-106
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.737	0.870	0.354	5.8e-105
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.356	0.425	0.416	7.5e-101
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.801	0.860	0.335	1e-100
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.848	0.878	0.320	3.4e-100
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.354	0.424	0.424	9.7e-99
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.741	0.786	0.340	1e-98
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.666	0.809	0.352	1.5e-97

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
 Identities = 301/829 (36%), Positives = 432/829 (52%)

Query:   226 GPIHS--SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLM 283
             G  HS  SL +LQ L  L+L  NDL  E+P  + N S L  LHLS     G +P  I  +
Sbjct:   113 GSFHSNSSLFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGLIPSSIENL 172

Query:   284 PSLCFLDVSSNSNLTGSLPEFPPS-SQLKVIELSETRFSGKLPDSINNLALLEDLELSDC 342
               L  L +SSN   +G +P    + S L  +ELS  +FSG++P SI NL+ L  L L   
Sbjct:   173 SRLTSLHLSSNQ-FSGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSN 231

Query:   343 NFFGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFTGTIPLSYGD 401
             +FFG IPSS GNL  L  +  S NNF G +PS F + N++I L+   N  +G +P+S  +
Sbjct:   232 DFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLN 291

Query:   402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL-EKFQNASSLSLREMDF 460
              L  L  L L +N   G IP ++    ++       N F G L     N   L +R +D 
Sbjct:   292 -LTRLSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPL-IR-LDL 348

Query:   461 SQNKLQGLVP-ESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXX 519
             S N+L G +   +I     L  L + SN F G I   + + +  L   +L          
Sbjct:   349 SDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVN-LTLFDLSHLNTQCRPV 407

Query:   520 XXXXXXXPK-IGTLKLSSCKIT--EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG 576
                     K +  L+LS    T  +  + L     L  LD+S N +     +   +    
Sbjct:   408 DFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPS 467

Query:   577 KLVH-LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFP-----IPPASIIFLDYS 630
             + +  L LS   +  F  P    T   L  LD+ +N ++G  P     +P  ++ +L+ S
Sbjct:   468 QSIQSLYLSGCGITDF--PEILRTQHELGFLDVSNNKIKGQVPGWLWTLP--NLFYLNLS 523

Query:   631 ENKFTTXXXXXXXXXXXXA-----VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTG 685
              N F +                  +    ++NN +G IP  +C    L  LDLS+N+  G
Sbjct:   524 NNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNTLDLSENNYNG 583

Query:   686 SIPSCLVS-SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTS 744
             SIP C+    + L VL LR N   G +P+ I    SLR+LD+  N L G LP+SL + ++
Sbjct:   584 SIPRCMEKLKSTLFVLNLRQNNLSGGLPKHIFE--SLRSLDVGHNLLVGKLPRSLIRFSN 641

Query:   745 LEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNN 804
             LEVL+V  N++N +FPFWL +L +L+VLVL+SN + G I +      F  L+IIDIS N+
Sbjct:   642 LEVLNVESNRINDTFPFWLSSLSKLQVLVLRSNAFHGPIHEA----TFPELRIIDISHNH 697

Query:   805 FSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKIL 864
             F+G LP  +F  W  M    K   +S   K++    S LYYQDS+ LMNKGL+MEL +IL
Sbjct:   698 FNGTLPTEYFVKWSAMSSLGKNEDQSNE-KYMG---SGLYYQDSMVLMNKGLAMELVRIL 753

Query:   865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQ 924
             TI+T++D S N+FEGEIP+ +G    LLVLN+SNN F G IP+++GNL  L SLD+S N+
Sbjct:   754 TIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNK 813

Query:   925 LSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQN 984
             L+G+IP++L  L+FL+ +  S N L G +P G QF     ++FE N GL G  L + C++
Sbjct:   814 LTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRD 873

Query:   985 ALPPVEQ---TTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVV 1030
                P  Q   TT+ EE      + E  WI    G   G+V G+T+G ++
Sbjct:   874 KHTPASQQNETTETEEED----EEEISWIAAAIGFIPGIVFGLTIGYIL 918

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 288/813 (35%), Positives = 413/813 (50%)

Query:   226 GPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPS 285
             G I SS+  L  LT+L+L  N  S ++ + + N S L YL+L      G+ P  I  +  
Sbjct:   135 GQITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSH 194

Query:   286 LCFLDVSSNSNLTGSLPE-FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNF 344
             L FLD+S N    G  P      S L  + L   +FSG++P SI NL+ L  L+LS+ NF
Sbjct:   195 LTFLDLSYN-RFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNF 253

Query:   345 FGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFTGTIPLSYGDQL 403
              G IPS  GNL++L  +    NNF G +PS F + N++  L    N  +G  P +    L
Sbjct:   254 SGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFP-NVLLNL 312

Query:   404 ISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQN 463
               L +L L NN   G +P ++ +  ++       N F G    F      SL  +  + N
Sbjct:   313 TGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIP-SLTYIRLNGN 371

Query:   464 KLQGLVP-ESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXX 522
             +L+G +   +I     L  L + +N F G I   + K L +L  L++             
Sbjct:   372 QLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISK-LVKLFRLDISHLNTQGPVDFSI 430

Query:   523 XXXXPKIGTLKLSSCKIT---EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
                   +  L +S    T   +   FL     L  LDLS N +     +   +     + 
Sbjct:   431 FSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQ 490

Query:   580 HLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTXXX 639
              L LS   +  F  P    T   L  LD+ +N ++G  P     +  L Y      T   
Sbjct:   491 SLYLSGCGITEF--PEFVRTQHELGFLDISNNKIKGQVPDWLWRLPILYYVNLSNNTLIG 548

Query:   640 XXXXXXXXXAVFFSLASNN-LSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS-SNIL 697
                      ++ + L SNN   G IP  +C    L  LDLSDN+  GSIP C+    + L
Sbjct:   549 FQRPSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNGSIPRCMGHLKSTL 608

Query:   698 KVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNG 757
              VL LR N   G +P+ I     LR+LD+  N L G LP+SLS  ++LEVL+V  N++N 
Sbjct:   609 SVLNLRQNHLSGGLPKQIFE--ILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRIND 666

Query:   758 SFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
             +FPFWL +LP+L+VLVL+SN + G I +      F  L+IIDIS N F+G LP  +F  W
Sbjct:   667 TFPFWLSSLPKLQVLVLRSNAFHGPIHEA----TFPELRIIDISHNRFNGTLPTEYFVKW 722

Query:   818 RGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQF 877
               M    K   +S   K++    S LYYQDS+ LMNKG++MEL +ILTI+T++D S N+F
Sbjct:   723 SAMSSLGKNEDQSNE-KYMG---SGLYYQDSMVLMNKGVAMELVRILTIYTAVDFSGNRF 778

Query:   878 EGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLN 937
             EGEIP+ +G    LLVL++SNN F G +P+++GNL  L SLD+S N+L+G+IP++L  L+
Sbjct:   779 EGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLS 838

Query:   938 FLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVE----QTT 993
             FL+ +  S N L G +P G QF T   ++FE N GL G  L + C++   P      +T 
Sbjct:   839 FLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQQFETP 898

Query:   994 KDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITL 1026
             + EE    +  W    IGFG G   G++ G  L
Sbjct:   899 ETEEEDEDLISWIAAAIGFGPGIAFGLMFGYIL 931

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 284/768 (36%), Positives = 415/768 (54%)

Query:   286 LCFLDVSSNSNLTGSLPEFPPS-SQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNF 344
             L  LD+S N +L+G +     + S L  ++LS   FSG +P S+ NL  L  L L D NF
Sbjct:   113 LTTLDLSYN-HLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDNNF 171

Query:   345 FGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFTGTIPLSYGDQL 403
              G IPSS GNL+ L  +D S NNF G +PS F S N++  L+  +N  +G +PL   + L
Sbjct:   172 GGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVIN-L 230

Query:   404 ISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL-EKFQNASSLSLREMDFSQ 462
               L  + L +N   G +P ++ +   +ES     N F G +        S++L  +D   
Sbjct:   231 TKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITLIFLD--N 288

Query:   463 NKLQGLVP-ESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXXXXXXXXXXXX 521
             N+L G +   +I     L VL+L  N   G I   + + L  L TL+L            
Sbjct:   289 NQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISR-LVNLRTLDLSHFNIQGQVDFN 347

Query:   522 XXXXXPKIGTLKLSSCKIT---EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGD--- 575
                    +G L LS    T   +    L     L  LDLS N +   + N + +V D   
Sbjct:   348 IFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVL--VTNKS-SVSDPPL 404

Query:   576 GKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDY---SEN 632
             G +  LNLS   +  F  P    T   +  LD+ +N ++G   +P   ++ L+Y   S N
Sbjct:   405 GLIGSLNLSGCGITEF--PDILRTQRQMRTLDISNNKIKGQ--VPSWLLLQLEYMHISNN 460

Query:   633 KF-----TTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSI 687
              F     +T              FF  ++NN SG IP  +C+   L +LDLS+N+ +G+I
Sbjct:   461 NFIGFERSTKLEKTVVPKPSMKHFFG-SNNNFSGKIPSFICSLRSLIILDLSNNNFSGAI 519

Query:   688 PSCLVS-SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLE 746
             P C+    + L  L LR N   G++P+ I    SLR+LD+S N L G LP+SL   ++LE
Sbjct:   520 PPCVGKFKSTLSDLNLRRNRLSGSLPKTIIK--SLRSLDVSHNELEGKLPRSLIHFSTLE 577

Query:   747 VLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFS 806
             VL+V  N++N +FPFWL +L +L+VLVL+SN + G I  T+    F  L+IIDIS N+F+
Sbjct:   578 VLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIHKTR----FPKLRIIDISRNHFN 633

Query:   807 GNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTI 866
             G LP+  F  W GM   + E  E    +F    + + YY DS+ LMNKGL MEL +IL I
Sbjct:   634 GTLPSDCFVEWTGM--HSLEKNED---RFNEKYMGSGYYHDSMVLMNKGLEMELVRILKI 688

Query:   867 FTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926
             +T++D S N+FEGEIP  +G    L +LN+S+N F G IP+++GNL+EL SLD+S N+LS
Sbjct:   689 YTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVSRNKLS 748

Query:   927 GKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNAL 986
             G+IP++L  L++L+ +  S N LVG++P G QF T +A+SFE N GLCG PL + C+   
Sbjct:   749 GEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEE-CRVVH 807

Query:   987 PPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLG-VVVSNE 1033
              P      +   S  +  W    IGF      G+V+G+T+G +V+S++
Sbjct:   808 EPTPSGESETLESEQVLSWIAAAIGFT----PGIVLGLTIGHIVLSSK 851

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 291/820 (35%), Positives = 414/820 (50%)

Query:   226 GPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPS 285
             G I SS+  L  LT L+L  N  S ++ + + N S L  L LS     G++P  I  +  
Sbjct:    72 GQITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQIPSSIGNLSH 131

Query:   286 LCFLDVSSNSNLTGSLPEFPPS-SQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNF 344
             L FL +S N    G +P    + S L  + LS  RF G+ P SI  L+ L +L LS   +
Sbjct:   132 LTFLGLSGN-RFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKY 190

Query:   345 FGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFTGTIPLSYGDQL 403
              G IPSS GNL++LI +  S NNF G +PS F + N++  L  + N   G  P +    L
Sbjct:   191 SGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFP-NVLLNL 249

Query:   404 ISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQN 463
               L V+ L NN   G +P ++ +  ++ +     N F G    F      SL  +  S N
Sbjct:   250 TGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIP-SLTYLGLSGN 308

Query:   464 KLQGLVP-ESIFQIKGLNVLRLSSNKFSGFITLEMFK--DLRQLGTLELXXXXXXXXXXX 520
             +L+G +   +I     L  L + SN F G I   + K  +L++LG   L           
Sbjct:   309 QLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNTQCRPVDFSI 368

Query:   521 XXXXXXPKIGTLKLSSCKIT--EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKL 578
                     +  L+LS    T  +  + L     L  LDLS N +     +   +    + 
Sbjct:   369 FSHLKS--LDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQS 426

Query:   579 VH-LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFP-----IPPASIIFLDYSEN 632
             +  L LS   +  F  P    T   L  LD+ +N ++G  P     +P  ++ +L+ S N
Sbjct:   427 IQSLYLSGCGITDF--PEILRTQHELGFLDVSNNKIKGQVPGWLWTLP--NLFYLNLSNN 482

Query:   633 KFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCL- 691
              F               +  S  +NN +G IP  +C    L  LDLSDN+ +GSIP C+ 
Sbjct:   483 TFIGFQRPTKPEPSMAYLLGS--NNNFTGKIPSFICELRSLYTLDLSDNNFSGSIPRCME 540

Query:   692 -VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV 750
              + SN L  L LR N   G  P+ I    SLR+LD+  N L G LP+SL   ++LEVL+V
Sbjct:   541 NLKSN-LSELNLRQNNLSGGFPEHIFE--SLRSLDVGHNQLVGKLPRSLRFFSNLEVLNV 597

Query:   751 GKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810
               N++N  FPFWL +L +L+VLVL+SN + G I        F  L+IIDIS N+F+G+LP
Sbjct:   598 ESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPINQA----LFPKLRIIDISHNHFNGSLP 653

Query:   811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSI 870
               +F  W  M         S +    YL   + YYQDS+ LMNKG+  EL +ILTI+T++
Sbjct:   654 TEYFVEWSRMSSLGTYEDGSNVN---YL--GSGYYQDSMVLMNKGVESELVRILTIYTAV 708

Query:   871 DVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIP 930
             D S N+FEGEIP+ +G    L VLN+SNN F G IP+++GNL  L SLD+S N+L G+IP
Sbjct:   709 DFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIP 768

Query:   931 EKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVE 990
             +++  L+ LS +  S N L G +P G QF T   +SFEGN GL G  L + C++   P  
Sbjct:   769 QEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPAS 828

Query:   991 ----QTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITL 1026
                 +T + EE    +  W    IGFG G   G++ G  L
Sbjct:   829 HQQFETPQTEEEDEDLISWIAAAIGFGPGIAFGLMFGYIL 868

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 161/387 (41%), Positives = 232/387 (59%)

Query:   651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT 710
             +FS  +N   G IPLS+C+   L  LDLS N+ TG IP C   SN L +L LR N   G+
Sbjct:   489 YFSARNNRYGGDIPLSICSRRSLVFLDLSYNNFTGPIPPC--PSNFL-ILNLRKNNLEGS 545

Query:   711 VPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLR 770
             +P     +  LR+LD+  N L G LP+SL  C++L+ L V  N +  +FPF L+ LP+L+
Sbjct:   546 IPDTYYADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIKDTFPFSLKALPKLQ 605

Query:   771 VLVLQSNNYDGSIKD-TQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQE 829
             VL+L SNN+ G +    Q +  F  L+I++I+ N F+G+LP  +F++W+       E Q 
Sbjct:   606 VLILHSNNFYGPLSPPNQGSLGFPELRILEIAGNKFTGSLPPDFFENWKASSLTMNEDQG 665

Query:   830 SQIL--KFVYLELSNLYYQ--DSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEML 885
               ++  K VY      Y+   +++ L  KGLSME  ++L+   +ID S N+ EGEIPE +
Sbjct:   666 LYMVYNKVVY---GTYYFTSLEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPESI 722

Query:   886 GDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLS 945
             G   AL+ LN+SNN F G IP +L NLK++ SLDLS NQLSG IP  + TL+FL+ + +S
Sbjct:   723 GLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVS 782

Query:   946 QNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDW 1005
              N L GEIP+G Q      +SFEGNAGLCG PL ++C     P  Q  K+EE      + 
Sbjct:   783 HNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEEEQ 842

Query:  1006 EFFWIGFGFGDGTGMVIGITLGVVVSN 1032
                W G G G G G+++G+ +  ++++
Sbjct:   843 VLNWKGVGIGYGVGVLLGLAIAQLIAS 869

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 301/897 (33%), Positives = 441/897 (49%)

Query:   158 LVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEEL-YLGGIDISGADW-GPXXXXXXXXX 215
             ++ LDLS S L    QL  +N      +L  L +L +L  +D+S  D+ G          
Sbjct:    85 VIELDLSFSCLRG--QLN-SN-----SSLFRLPQLRFLTTLDLSNNDFIGQIPSSLETLS 136

Query:   216 XXXXPDC---HVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGL 272
                  D    H +G I SS+  L  L  ++   N+ S ++P  L   S L   +LS    
Sbjct:   137 NLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYNNF 196

Query:   273 YGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSS-QLKVIELSETRFSGKLPDSINNL 331
              GRVP  I  +  L  L +S NS   G LP    S   L  + L    F GK+P S+ NL
Sbjct:   197 SGRVPSSIGNLSYLTTLRLSRNS-FFGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNL 255

Query:   332 ALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNS 390
             + L  ++L   NF G IP S GNL+ L +   S NN  G +PS F + N++  L    N 
Sbjct:   256 SHLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNK 315

Query:   391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA 450
              +G+ P++  + L  L  L L NN L G +P ++ +  +++     +N F G L      
Sbjct:   316 LSGSFPIALLN-LRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPS-SLF 373

Query:   451 SSLSLREMDFSQNKLQGLVP-ESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLEL 509
             +  SL+ +    N+L G +   +I     L VLRL +N F G I   + K L  L  L+L
Sbjct:   374 NIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHRSISK-LVNLKELDL 432

Query:   510 XXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT---EFPNFLRNQTNLFHLDLSNNRIKGEI 566
                                I  L LS    T   +    L +   L  LDLS + +    
Sbjct:   433 SNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTN 492

Query:   567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAV-LDLHSNMLQGSFP----IPP 621
              +   N     +  L LS   +  F K    L S  L + LD+ +N ++G  P    + P
Sbjct:   493 KSSLSNSSLVLISQLYLSGCGITEFPK---FLRSQELMLTLDISNNKIKGQVPGWLWMLP 549

Query:   622 ASIIFLDYSENKF-----TTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCNAFDLQVL 676
               + +++ S N F     +T                  ++NN +G IP  +C    L  L
Sbjct:   550 V-LNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFTGNIPSFICELPYLSTL 608

Query:   677 DLSDNHLTGSIPSCL--VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGS 734
             D S+N   GSIP+C+  + S  L+ L LR+N   G +P+ I    SL +LD+  N L G 
Sbjct:   609 DFSNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENIFE--SLISLDVGHNQLVGK 666

Query:   735 LPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL 794
             LP+SLS  +SL +L+V  N+++ +FP WL +L +L+VLVL+SN + G I+ TQ    F+ 
Sbjct:   667 LPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVLRSNAFYGPIEKTQ----FSK 722

Query:   795 LQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES--QILKFVYLELSNLYYQDSVTLM 852
             L+IIDIS N F+G LPA +F +W  M    +   +S  + +  +Y+  ++ +Y DS+ LM
Sbjct:   723 LRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMS-TDYFYFDSMVLM 781

Query:   853 NKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNL 912
             NKG+ MEL ++L +FT ID S N+FEGEIP+ +G    L VLN+SNN   G I +++GNL
Sbjct:   782 NKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNL 841

Query:   913 KELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAG 972
               L SLD+S N+LSG+IP++L  L +L+ +  S N LVG +P G QF T   +SFE N G
Sbjct:   842 MALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHG 901

Query:   973 LCGFPLPKACQ-NALPPVEQ--TTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITL 1026
             L G  L K C  +   P +     + EE    +  W    IGF  G   G+  G  L
Sbjct:   902 LYGPSLEKICDIHGKTPQQSDMAPEPEEDEEEVISWIAAVIGFILGTALGLTFGCIL 958

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 305/952 (32%), Positives = 476/952 (50%)

Query:   110 QHLNLADNSLYSSPFPSGFDRLFSLTHLNLS-YSGFSGHIPLEISSLKMLVSLDLSASGL 168
             QHL  +D       F + F  + S + +N S    + G I  +  S  + + LDLS+  L
Sbjct:    71 QHLCHSDQKDALLDFKNEFGMVDSKSWVNKSDCCSWDG-ITCDAKSGNV-IGLDLSSIFL 128

Query:   169 VAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPXXXXXXXXXXXXXPDCHVAGPI 228
                 QL+ +N   L K L +L +L L   + + +                     ++G I
Sbjct:   129 YG--QLK-SN-SSLFK-LRHLRDLNLANNNFNNSPIPAEFDKLTGLERLDLSQSSLSGQI 183

Query:   229 HSSLSKLQLLTHLNLDGND---------LS---SEVPDFLTNFSSLQYLHLSLCGLYGRV 276
               +L +L  L  L+L  +D         LS   S +P    N  +L+ L +S   +   +
Sbjct:   184 PINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEI 243

Query:   277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPS----SQLKVIELSET-RFSGKLPDSINNL 331
             PE+   + SL  L+++   NL G   EFP S      L+ I+L       G LP    N 
Sbjct:   244 PEEFSNIRSLRSLNLNG-CNLFG---EFPSSILLIPNLQSIDLGNNPNLRGNLPVFHENN 299

Query:   332 ALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNS 390
             +LL+ L +   +F G+IP S  +L  L ++  S + FSG +P S  + + +  L  + N+
Sbjct:   300 SLLK-LTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNN 358

Query:   391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA 450
               G IP S G+ L  L    +  N L G +P +L     + ++ L  N+F G L    + 
Sbjct:   359 LIGEIPSSIGN-LNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPP--SI 415

Query:   451 SSLSLREMDFSQ-NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLEL 509
             S LS  +  F+  N   G +   + +I  L  + LS N+ +  + +E    L  L T  +
Sbjct:   416 SQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYI 475

Query:   510 XXXXXXXXX--XXXXXXXXPKIGTLKLSSCKITEFPNFLRN-QTNLFHLDLSNNRIKGEI 566
                                 ++GTL +S   I+   N   +  +NL +L L +  I  + 
Sbjct:   476 YHYNYTKVRPLDLNVFSSLKQLGTLYISRIPIST-TNITSDFPSNLEYLSLRSCNIT-DF 533

Query:   567 PNWTWNVGDGK-LVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPI-----P 620
             P +   +  G+ L  L+LS+N ++  + P        L  +DL +N L G F +     P
Sbjct:   534 PEF---IRKGRNLQILDLSNNKIKG-QVPDWLWRMPTLNSVDLSNNSLSG-FHVSVKASP 588

Query:   621 PASIIFLDYSENKFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSD 680
              + +  +D S N F                +FS ++NN +G IP S+C    L++LDLS+
Sbjct:   589 ESQLTSVDLSSNAFQGPLFLPSKSLR----YFSGSNNNFTGKIPRSICGLSSLEILDLSN 644

Query:   681 NHLTGSIPSCLVS-SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL 739
             N+L GS+P CL +  + L  L LRNN   G++P++  N   LR+LD+S N + G LP SL
Sbjct:   645 NNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSL 704

Query:   740 SKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTA-NAFALLQII 798
             + C+SLEVL+VG N++N  FPF L +L +L+VLVL SN + G++ +       F  LQII
Sbjct:   705 TGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQII 764

Query:   799 DISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSM 858
             D+S N+F G LP+ +F +W  M  +   + E + ++   +  S+L Y  S+ LM+KG+SM
Sbjct:   765 DVSHNDFFGILPSDYFMNWTAMSSKKDNNIEPEYIQNPSVYGSSLGYYTSLVLMSKGVSM 824

Query:   859 ELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSL 918
             E+ ++LTI+T+ID+S NQ  G+IP+ +G    L +LNMS+N F G IP++L NLK L SL
Sbjct:   825 EMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESL 884

Query:   919 DLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPL 978
             D+S N +SG+IP +L TL+ L+ + +S N LVG IP+G QF     +S+EGN GL G  L
Sbjct:   885 DISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSL 944

Query:   979 PKACQNALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVV 1030
                C +        T+  E      +  F WI  G G   G+V G+ +G +V
Sbjct:   945 ENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIV 996

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
 Identities = 165/389 (42%), Positives = 233/389 (59%)

Query:   650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLG 709
             ++FS   N   G IPLS+CN   L VLDL  N+ TG IP CL  SN+L  L LR N   G
Sbjct:   487 IYFSARYNRFKGDIPLSICNRSSLDVLDLRYNNFTGPIPPCL--SNLL-FLNLRKNNLEG 543

Query:   710 TVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQL 769
             ++P     +  LR+LD+  N L G LP+SL  C++L+ L V  N +  +FPF+L+ LP+L
Sbjct:   544 SIPDTYFADAPLRSLDVGYNRLTGKLPRSLLNCSALQFLSVDHNGIEDTFPFYLKVLPKL 603

Query:   770 RVLVLQSNNYDGSIKD-TQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQ 828
             +VL+L SN + G +    Q +  F  L+I++I+ N  +G+LP  +F +W+       E Q
Sbjct:   604 QVLLLSSNKFYGPLSPPNQGSLGFPELRILEIAGNKLTGSLPQDFFVNWKASSLTMNEDQ 663

Query:   829 ESQIL--KFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLG 886
                ++  K VY  +  L Y  ++ L  KGLSME   +LT   +ID+S N+ EGEIPE +G
Sbjct:   664 GLYMVYSKVVY-GIYYLSYLATIDLQYKGLSMEQKWVLTSSATIDLSGNRLEGEIPESIG 722

Query:   887 DFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQ 946
                AL+ LN+SNN F G IP +L NL ++ SLDLS NQLSG IP  L TL+FL+ + +S 
Sbjct:   723 LLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSNQLSGTIPNGLGTLSFLAYVNVSH 782

Query:   947 NLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKAC--QNALPPVEQTTKDE-EGSGSIF 1003
             N L GEIP+G Q      +SFEGNAGLCG PL + C   NA PP  Q  ++E E    + 
Sbjct:   783 NQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQQRCFGTNA-PPAHQFKEEEDEEQEQVL 841

Query:  1004 DWEFFWIGFGFGDGTGMVIGITLGVVVSN 1032
             +WE    G   G G G+++G+ +  ++++
Sbjct:   842 NWE----GVAIGYGVGVLLGLAIAQLIAS 866

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 284/833 (34%), Positives = 422/833 (50%)

Query:   229 HSSLSKLQLLTHLNLD--------GNDLSSEVPDFL----TNFSSLQYLHLSLCGLYGRV 276
             H S+  LQL   ++LD         + LS E P FL     NF +L+ L +S   +   +
Sbjct:   163 HISIKLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAI 222

Query:   277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPS-SQLKVIELSET-RFSGKLPDSINNLALL 334
             P +   M SL  L +    NL G  P        L+ I L       G LP+ + N +LL
Sbjct:   223 PIEFSYMWSLRSLTLKG-CNLLGRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRNNSLL 281

Query:   335 EDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS-FASSNKVISLKFAHNSFTG 393
             + L + + +F G+IP+S  NL  L ++   ++ FSG +PS   S + + +L  + N+F G
Sbjct:   282 K-LSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVG 340

Query:   394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL 453
              IP S  + L  L + D+ +N+L G  P SL     +  + +  N F G L      S L
Sbjct:   341 EIPSSVSN-LKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPP--TISQL 397

Query:   454 SLREMDFS--QNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELXX 511
             S  E  FS   N   G +P S+F I  L  L LS N+ +    ++    L  L  L L  
Sbjct:   398 SNLEF-FSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDN 456

Query:   512 XXXXXXXXXXXXXXXPK-IGTLKLSSCKI--TEFPNFLRNQTNLFHLDLSNNRIKGEIPN 568
                             K + +L LS   +  T   +     ++L +L+LS   I  E P 
Sbjct:   457 NNFKASQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNII-EFPE 515

Query:   569 WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML---QGSFP-IPPASI 624
             +  N     L  ++LS+N ++  + P        L+ +DL +N L    GS   +  + I
Sbjct:   516 FIRN--QRNLSSIDLSNNNIKG-QVPNWLWRLPELSTVDLSNNSLIGFNGSLKALSGSKI 572

Query:   625 IFLDYSENKFTTXXXXXXXXXXXXAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT 684
             + LD S N F                +F  + NN +G IP S+C   +  +LDLS+N+L 
Sbjct:   573 VMLDLSSNAFQGPLFMPPRGIQ----YFLGSYNNFTGYIPPSICGLANPLILDLSNNNLH 628

Query:   685 GSIPSCLVSS-NILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
             G IP CL +  + L VL LRNN   G++P +  N   L +LD+S N L G LP SL+ C+
Sbjct:   629 GLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCS 688

Query:   744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTA-NAFALLQIIDISS 802
             +LE+L+V  N +N +FPFWL +LP+L+VLVL+SNN+ G++ +       F LL+I D+S 
Sbjct:   689 ALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSH 748

Query:   803 NNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLY-YQDSVTLMNKGLSMELA 861
             N+F G LP+ +F +W  + K   E Q        Y+     Y Y  S+ LMNKG+SME+ 
Sbjct:   749 NDFVGTLPSDYFMNWTAISKSETELQ--------YIGDPEDYGYYTSLVLMNKGVSMEMQ 800

Query:   862 KILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLS 921
             +ILT +T ID + N+ +G+IPE +G    L VLN+S+N F G IP++L NL  L SLD+S
Sbjct:   801 RILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDIS 860

Query:   922 HNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKA 981
              N++ G+IP +L TL+ L  + +S N LVG IP+G QF     +S+EGN G+ G  L   
Sbjct:   861 QNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDV 920

Query:   982 CQN--ALPPVEQTTKDEEGSGSIFDWEFFWIGFGFGDGTGMVIGITLGVVVSN 1032
             C +  A  P +        S S  D    WI    G   GMV G+T+G ++++
Sbjct:   921 CGDIHAPRPPQAVLPHSSSSSSEEDELISWIAACLGFAPGMVFGLTMGYIMTS 973

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
 Identities = 260/738 (35%), Positives = 379/738 (51%)

Query:   310 LKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFS 369
             L  ++LS   FSG++P  I N + L  L+LS   F G IPSS GNL++L  +D S N F 
Sbjct:   121 LTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLSQLTFLDLSGNEFV 180

Query:   370 GSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQS 429
             G +P F + N++ +L    N  TG  PLS  + L  L  L L  N   G +P ++ +  +
Sbjct:   181 GEMPFFGNMNQLTNLYVDSNDLTGIFPLSLLN-LKHLSDLSLSRNQFTGTLPSNMSSLSN 239

Query:   430 IESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVP-ESIFQIKGLNVLRLSSNK 488
             +E      N F G L      +  SL  ++   N+L G +   +I     L VL +S+N 
Sbjct:   240 LEYFEAWGNAFTGTLPS-SLFTIASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISNNN 298

Query:   489 FSGFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKITEFPN---- 544
             F G I   + K +  L  L+L                   +  L LS    T   +    
Sbjct:   299 FIGPIPKSISKFIN-LQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNAL 357

Query:   545 FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV-HLNLSHNMLEAFEKPGPNLTSTVL 603
             F  +  +++ +DLS N +         +    +L+  L LS   +  F  P    +   +
Sbjct:   358 FSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGITEF--PELLRSQHKM 415

Query:   604 AVLDLHSNMLQGSFP-----IPPASIIFLDYSENKFT---TXXXXXXXXXXXXAVFFSLA 655
               LD+ +N ++G  P     +P   +IF+D S N FT                ++ + + 
Sbjct:   416 TNLDISNNKIKGQVPGWLWTLP--KLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVG 473

Query:   656 SNN-LSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS-SNILKVLKLRNNEFLGTVPQ 713
             SNN  +G IP  +C    L  LDLSDN+L GSIP C+ +  + L  L LR N   G +P+
Sbjct:   474 SNNNFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPR 533

Query:   714 VIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLV 773
              I    SLR+LD+  N L G LP+S  + ++LEVL+V  N++N +FPFWL +L +L+VLV
Sbjct:   534 SIFK--SLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQVLV 591

Query:   774 LQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQIL 833
             L+SN + G I       +F  L+II++S N FSG LPA +F +W  M         SQ  
Sbjct:   592 LRSNAFHGPIHHA----SFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQEK 647

Query:   834 KFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLV 893
                Y+  S  YY DSV LMNKGL MEL +IL I+T++D S N+ EGEIP  +G    L V
Sbjct:   648 ---YMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHV 704

Query:   894 LNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEI 953
             LN+S+N F G IP+++GNL+EL SLD+S N+LSG+IP++L  L++L+ +  S N L G +
Sbjct:   705 LNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLV 764

Query:   954 PRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDWEFF-WIGF 1012
             P G QF     +SF+ N GL G  L + C +   P  Q  +  E      D E F WI  
Sbjct:   765 PGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEE--DREVFSWIAA 822

Query:  1013 GFGDGTGMVIGITLGVVV 1030
               G G G+  G+T+  ++
Sbjct:   823 AIGFGPGIAFGLTIRYIL 840

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1055
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-65
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-59
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-50
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-40
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-18
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  239 bits (612), Expect = 1e-65
 Identities = 192/654 (29%), Positives = 282/654 (43%), Gaps = 117/654 (17%)

Query: 329 NNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKF 386
           NN + +  ++LS  N  G I S+   L  +  I+ S N  SG +P   F +S+ +  L  
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 387 AHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK 446
           ++N+FTG+IP      + +L+ LDL NN L G IP  +                      
Sbjct: 126 SNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDI---------------------- 160

Query: 447 FQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGT 506
               S  SL+ +D   N L G +P S+  +  L  L L+SN+  G I  E+ + ++ L  
Sbjct: 161 ---GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKW 216

Query: 507 LELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEI 566
           + L  NN S                         E P  +   T+L HLDL  N + G I
Sbjct: 217 IYLGYNNLS------------------------GEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA---- 622
           P+   N+ +                           L  L L+ N L G  PIPP+    
Sbjct: 253 PSSLGNLKN---------------------------LQYLFLYQNKLSG--PIPPSIFSL 283

Query: 623 -SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDN 681
             +I LD S+N  +  IP  +    N  +   L SNN +G IP++L +   LQVL L  N
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEIL-HLFSNNFTGKIPVALTSLPRLQVLQLWSN 342

Query: 682 HLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSK 741
             +G IP  L   N L VL L  N   G +P+ + +  +L  L L  N L G +PKSL  
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 742 CTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDIS 801
           C SL  + +  N  +G  P     LP +  L + +NN  G I   +       LQ++ ++
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD--MPSLQMLSLA 460

Query: 802 SNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELA 861
            N F G LP     S+   +    +   +Q    V  +L +L       LM         
Sbjct: 461 RNKFFGGLP----DSFGSKRLENLDLSRNQFSGAVPRKLGSL-----SELMQ-------- 503

Query: 862 KILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLS 921
                   + +S N+  GEIP+ L     L+ L++S+N   GQIPA+   +  L  LDLS
Sbjct: 504 --------LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555

Query: 922 HNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCG 975
            NQLSG+IP+ L  +  L  + +S N L G +P    F    A++  GN  LCG
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  220 bits (563), Expect = 2e-59
 Identities = 185/598 (30%), Positives = 283/598 (47%), Gaps = 74/598 (12%)

Query: 21  FSLLCILVSGRCLEDQKL-LLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPR 79
           F L  + ++   L  ++L LLL FK  ++     D    L +W+S+ D C W G+TC+  
Sbjct: 14  FMLFFLFLNFSMLHAEELELLLSFKSSIN-----DPLKYLSNWNSSADVCLWQGITCN-N 67

Query: 80  TGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSL-------------------- 119
           +  V+ +D+S   I+G I  SS++F L  +Q +NL++N L                    
Sbjct: 68  SSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 120 ----YSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLR 175
               ++   P G   + +L  L+LS +  SG IP +I S   L  LDL  + LV  I   
Sbjct: 126 SNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 176 RANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKL 235
             NL  L + LT      +G I          L  + +L+ + L   +++G I   +  L
Sbjct: 184 LTNLTSL-EFLTLASNQLVGQIPRE-------LGQMKSLKWIYLGYNNLSGEIPYEIGGL 235

Query: 236 QLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNS 295
             L HL+L  N+L+  +P  L N  +LQYL L    L G +P  IF +  L  LD+S NS
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 296 NLTGSLPEFPPSSQ-LKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGN 354
            L+G +PE     Q L+++ L    F+GK+P ++ +L  L+ L+L    F G IP + G 
Sbjct: 296 -LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354

Query: 355 LTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGD----QLISLQ-- 407
              L  +D S NN +G +P    SS  +  L    NS  G IP S G     + + LQ  
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 408 -----------------VLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA 450
                             LD+ NN+LQG I    +   S++ L L +NKF G L     +
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
               L  +D S+N+  G VP  +  +  L  L+LS NK SG I  E+    ++L +L+LS
Sbjct: 475 K--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLVSLDLS 531

Query: 511 ENNFSFNVSGSNSNMFPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEIP 567
            N  S  +  S S M P +  L LS  +++ E P  L N  +L  +++S+N + G +P
Sbjct: 532 HNQLSGQIPASFSEM-PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  191 bits (487), Expect = 7e-50
 Identities = 184/585 (31%), Positives = 273/585 (46%), Gaps = 73/585 (12%)

Query: 158 LVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRIL 217
           +VS+DLS   +   I          +  L  ++ + L    +SG     I +  S+LR L
Sbjct: 71  VVSIDLSGKNISGKISS-------AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

Query: 218 SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
           +L + +  G I      +  L  L+L  N LS E+P+ + +FSSL+ L L    L G++P
Sbjct: 124 NLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 278 EKIFLMPSLCFLDVSSNSNLTGSLP-EFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
             +  + SL FL ++SN  L G +P E      LK I L     SG++P  I  L  L  
Sbjct: 182 NSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 337 LELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTI 395
           L+L   N  G IPSS GNL  L  +   +N  SG +P S  S  K+ISL  + NS +G I
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 396 PLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSL 455
           P     QL +L++L L +N+  G IP +L +   ++ L L  NKF G++ K     + +L
Sbjct: 301 P-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NL 358

Query: 456 REMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFI--TLEMFKDLRQLGTLELSENN 513
             +D S N L G +PE +     L  L L SN   G I  +L   + LR+   + L +N+
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR---VRLQDNS 415

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV 573
           F    SG   + F K   L L                 ++ LD+SNN ++G I +  W++
Sbjct: 416 F----SGELPSEFTK---LPL-----------------VYFLDISNNNLQGRINSRKWDM 451

Query: 574 GDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPAS--IIFLDYSE 631
                                        L +L L  N   G  P    S  +  LD S 
Sbjct: 452 ---------------------------PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSR 484

Query: 632 NKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCL 691
           N+F+  +P  +G+ ++  +   L+ N LSG IP  L +   L  LDLS N L+G IP+  
Sbjct: 485 NQFSGAVPRKLGS-LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 692 VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLP 736
               +L  L L  N+  G +P+ +GN  SL  +++S NHL GSLP
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  160 bits (405), Expect = 8e-40
 Identities = 131/399 (32%), Positives = 196/399 (49%), Gaps = 49/399 (12%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
           L  L HL+L  N+L + P PS    L +L +L L  +  SG IP  I SL+ L+SLDLS 
Sbjct: 235 LTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 166 SGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVA 225
           + L   I        +LV  L NLE L+L   + +G     + S L  L++L L     +
Sbjct: 294 NSLSGEI-------PELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFS 345

Query: 226 GPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTN---------FS---------------S 261
           G I  +L K   LT L+L  N+L+ E+P+ L +         FS               S
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 262 LQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP----EFPPSSQLKVIELSE 317
           L+ + L      G +P +   +P + FLD+S+N NL G +     + P    L+++ L+ 
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMP---SLQMLSLAR 461

Query: 318 TRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFAS 377
            +F G LPDS  +   LE+L+LS   F G++P   G+L+EL+ +  S N  SG +P   S
Sbjct: 462 NKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 378 S-NKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLG 436
           S  K++SL  +HN  +G IP S+ +  + L  LDL  N L G IPK+L   +S+  + + 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPV-LSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 437 QNKFHGQLEKFQ-----NASSLSLREMDFSQNKLQGLVP 470
            N  HG L         NAS+++        +   GL P
Sbjct: 580 HNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPP 618

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.6 bits (243), Expect = 2e-20
 Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 44/314 (14%)

Query: 102 SLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSL 161
           S+F LQ+L  L+L+DNSL S   P    +L +L  L+L  + F+G IP+ ++SL  L  L
Sbjct: 279 SIFSLQKLISLDLSDNSL-SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337

Query: 162 DLSASGLVA--PIQLRRAN----LEKLVKNLT-----------NLEELYLGGIDISGADW 204
            L ++      P  L + N    L+    NLT           NL +L L    + G + 
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG-EI 396

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
              L    +LR + L D   +G + S  +KL L+  L++  N+L   +     +  SLQ 
Sbjct: 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456

Query: 265 LHLSLCGLYGR-----------------------VPEKIFLMPSLCFLDVSSNSNLTGSL 301
           L L+    +G                        VP K+  +  L  L +S N  L+G +
Sbjct: 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEI 515

Query: 302 P-EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELIN 360
           P E     +L  ++LS  + SG++P S + + +L  L+LS     G IP + GN+  L+ 
Sbjct: 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575

Query: 361 IDFSRNNFSGSLPS 374
           ++ S N+  GSLPS
Sbjct: 576 VNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 89.5 bits (222), Expect = 4e-18
 Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 870 IDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKI 929
           + + N    G IP  +     L  +N+S N+ +G IP +LG++  L  LDLS+N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 930 PEKLATLNFLSVLKLSQNLLVGEIPR--GPQFATFTAASFEGNAGLCGFPLPKACQNALP 987
           PE L  L  L +L L+ N L G +P   G +     + +F  NAGLCG P  +AC   L 
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLS 542

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 8e-10
 Identities = 32/85 (37%), Positives = 47/85 (55%)

Query: 676 LDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSL 735
           L L +  L G IP+ +     L+ + L  N   G +P  +G+  SL  LDLS N   GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 736 PKSLSKCTSLEVLDVGKNQLNGSFP 760
           P+SL + TSL +L++  N L+G  P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-09
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 326 DSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISL 384
           DS      ++ L L +    G IP+    L  L +I+ S N+  G++P S  S   +  L
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 385 KFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSL 424
             ++NSF G+IP S G QL SL++L+L  NSL G +P +L
Sbjct: 472 DLSYNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 33 LEDQKLLLLEFKRGLSFDPQTDSTNKLLSW-SSTTDCCSWDGVTCD 77
          L D +  LL FK  L+ DP    +  L SW  S++D CSW GVTCD
Sbjct: 1  LNDDRDALLAFKSSLNGDP----SGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 34/87 (39%), Positives = 50/87 (57%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
            L +  L G IP  +     LQ ++LS N + G+IP  L S   L+VL L  N F G++P
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSL 739
           + +G   SLR L+L+ N L+G +P +L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 5e-08
 Identities = 34/84 (40%), Positives = 46/84 (54%)

Query: 700 LKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSF 759
           L L N    G +P  I     L++++LS N + G++P SL   TSLEVLD+  N  NGS 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 760 PFWLETLPQLRVLVLQSNNYDGSI 783
           P  L  L  LR+L L  N+  G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 6e-08
 Identities = 27/63 (42%), Positives = 35/63 (55%)

Query: 654 LASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ 713
           L+ N++ G IP SL +   L+VLDLS N   GSIP  L     L++L L  N   G VP 
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 714 VIG 716
            +G
Sbjct: 509 ALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 3e-07
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 294 NSNLTGSLP-EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
           N  L G +P +      L+ I LS     G +P S+ ++  LE L+LS  +F GSIP S 
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 353 GNLTELINIDFSRNNFSGSLPS 374
           G LT L  ++ + N+ SG +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 409 LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLE-KFQNASSLSLREMDFSQNKLQG 467
           L L N  L+G IP  +   + ++S+ L  N   G +     + +SL +  +D S N   G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV--LDLSYNSFNG 480

Query: 468 LVPESIFQIKGLNVLRLSSNKFSG 491
            +PES+ Q+  L +L L+ N  SG
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 4e-06
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV 276
           L L +  + G I + +SKL+ L  +NL GN +   +P  L + +SL+ L LS     G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 277 PEKIFLMPSLCFLDVSSNSNLTGSLP 302
           PE +  + SL  L+++ NS L+G +P
Sbjct: 483 PESLGQLTSLRILNLNGNS-LSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)

Query: 241 LNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGS 300
           L LD   L   +P+ ++    LQ ++LS   + G +P  +  + SL  LD+S NS   GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGS 481

Query: 301 LPE-FPPSSQLKVIELSETRFSGKLPDSINNLAL 333
           +PE     + L+++ L+    SG++P ++    L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 370 GSLPSFASS-NKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQ 428
           G +P+  S    + S+  + NS  G IP S G  + SL+VLDL  NS  G IP+SL    
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 429 SIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQN 463
           S+  L L  N   G++        L     +F+ N
Sbjct: 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           +L++LDLS N L      +     +L+VLD+  N L    P     LP LR L L  NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 46.4 bits (110), Expect = 9e-05
 Identities = 70/248 (28%), Positives = 105/248 (42%), Gaps = 44/248 (17%)

Query: 172 IQLRRANLEKL---VKNLTNLEELYLGG----IDISGADWGPILSILSNLRILSLPDCHV 224
           +Q++ + LEKL   V +LT L  + L G     +I      P LS+ +NL  L L DC  
Sbjct: 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSS 669

Query: 225 AGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMP 284
              + SS+  L  L  L++   +    +P  + N  SL  L+LS C        K     
Sbjct: 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL-----KS---- 719

Query: 285 SLCFLDVSSN-SNL---TGSLPEFPPSSQLKVIELSETRF----SGKLPDSINNLA---- 332
              F D+S+N S L     ++ EFP  S L++  L E       S KL + +  L     
Sbjct: 720 ---FPDISTNISWLDLDETAIEEFP--SNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774

Query: 333 ----LLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAH 388
                L  L LSD      +PSS  NL +L +++        +LP+  +   + SL  + 
Sbjct: 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834

Query: 389 NSFTGTIP 396
            S   T P
Sbjct: 835 CSRLRTFP 842

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 32/117 (27%)

Query: 137 LNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGG 196
           L L   G  G IP +IS L+ L S++LS + +                          G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSI-------------------------RGN 457

Query: 197 IDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVP 253
           I  S       L  +++L +L L      G I  SL +L  L  LNL+GN LS  VP
Sbjct: 458 IPPS-------LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 24/59 (40%), Positives = 29/59 (49%)

Query: 673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           L+ LDLS+N LT            LKVL L  N      P+      SLR+LDLS N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 21/58 (36%), Positives = 26/58 (44%)

Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925
            S+D+SNN+              L VL++S NN     P     L  L SLDLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           +L+ +D S N+L  +   +   +  L VL LS N  +  I+ E F  L  L +L+LS NN
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 514 F 514
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 0.002
 Identities = 91/348 (26%), Positives = 134/348 (38%), Gaps = 27/348 (7%)

Query: 144 FSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD 203
            S  + L  SSL  L+SLDL +   ++ +      L     NL  L  L L    +    
Sbjct: 55  SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLL-----NLLPLPSLDLNLNRLRSNI 109

Query: 204 WGPILSILSNLRILSLPDCHVAGPIHSSLSKLQL-LTHLNLDGNDLSSEVPDFLTNFSSL 262
               L  L+NL  L L D +    I   +  L+  L  L+L  N + S     L N  +L
Sbjct: 110 --SELLELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNL 165

Query: 263 QYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPP-SSQLKVIELSETRFS 321
           + L LS   L   +P+ +  + +L  LD+S N      LP      S L+ ++LS     
Sbjct: 166 KNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGN--KISDLPPEIELLSALEELDLSNNSII 222

Query: 322 GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKV 381
            +L  S++NL  L  LELS  N    +P S GNL+ L  +D S N  S S+ S  S   +
Sbjct: 223 -ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNL 279

Query: 382 ISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
             L  + NS +  +PL     L+   +L+L               +  + S+LL  N   
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA--------LELKLNSILLNNNILS 331

Query: 442 GQLEKFQNASS--LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSN 487
                   A S   SL  +    N L               +  L   
Sbjct: 332 NGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDL 379

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
           LK L L NN              +L+ LDLS N+L    P++ S   SL  LD+  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1055
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
PLN03150	623	hypothetical protein; Provisional	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.55
PLN03150	623	hypothetical protein; Provisional	99.51
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG4341	483	consensus F-box protein containing LRR [General fu	97.78
KOG4341	483	consensus F-box protein containing LRR [General fu	97.77
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
PRK15386	426	type III secretion protein GogB; Provisional	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
PRK15386	426	type III secretion protein GogB; Provisional	97.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.37
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.7
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.14
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.03
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.8
KOG4308	478	consensus LRR-containing protein [Function unknown	91.55
KOG4308	478	consensus LRR-containing protein [Function unknown	90.97
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.9
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.77
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.71
smart00370	26	LRR Leucine-rich repeats, outliers.	84.71
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.55

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-72  Score=719.59  Aligned_cols=584  Identities=35%  Similarity=0.571  Sum_probs=372.2

Q ss_pred             CHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCcccceeEecCCCCcEEEEEcCCCccccccCCCCCccCCCCCCee
Q 001554           33 LEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHL  112 (1055)
Q Consensus        33 ~~~~~~aLl~~k~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L  112 (1055)
                      .++|++||++||+++.++.     +.+.+|..+.+||.|+||+|+. .++|+.|||+++.++|.+++  .+..+++|++|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~-----~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL-----KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc-----ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhCCCCCCEE
Confidence            5689999999999996433     3678998888999999999986 57999999999999988766  77788888888


Q ss_pred             eCCCCCCCCCCCCccCC-CCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCce
Q 001554          113 NLADNSLYSSPFPSGFD-RLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEE  191 (1055)
Q Consensus       113 ~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~  191 (1055)
                      +|++|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++++                          
T Consensus        99 ~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~--------------------------  149 (968)
T PLN00113         99 NLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN--------------------------  149 (968)
T ss_pred             ECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC--------------------------
Confidence            8888887765 665544 777777777777777766663  3344444444444                          


Q ss_pred             eeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCc
Q 001554          192 LYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG  271 (1055)
Q Consensus       192 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~  271 (1055)
                                                    |.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       150 ------------------------------n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        150 ------------------------------NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             ------------------------------CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence                                          34444455555555666666666665555555555556666666666655


Q ss_pred             CCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCccc
Q 001554          272 LYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS  351 (1055)
Q Consensus       272 l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  351 (1055)
                      +.+.+|..++++++|++|+++                        +|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus       200 l~~~~p~~l~~l~~L~~L~L~------------------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        200 LVGQIPRELGQMKSLKWIYLG------------------------YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             CcCcCChHHcCcCCccEEECc------------------------CCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence            555555555555555555554                        33444455555555555555555555555555555


Q ss_pred             ccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCcc
Q 001554          352 FGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIE  431 (1055)
Q Consensus       352 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  431 (1055)
                      ++++++|++|++++|.+.+.+|..+                        ..+++|++|++++|.+.+.+|..+..+++  
T Consensus       256 l~~l~~L~~L~L~~n~l~~~~p~~l------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--  309 (968)
T PLN00113        256 LGNLKNLQYLFLYQNKLSGPIPPSI------------------------FSLQKLISLDLSDNSLSGEIPELVIQLQN--  309 (968)
T ss_pred             HhCCCCCCEEECcCCeeeccCchhH------------------------hhccCcCEEECcCCeeccCCChhHcCCCC--
Confidence            5555555555555554443332221                        23334444444444433333333222222  


Q ss_pred             EEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCC
Q 001554          432 SLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE  511 (1055)
Q Consensus       432 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~  511 (1055)
                                             |+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.                   
T Consensus       310 -----------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------  347 (968)
T PLN00113        310 -----------------------LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE-------------------  347 (968)
T ss_pred             -----------------------CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc-------------------
Confidence                                   22222222222222222233333333333333322211                   


Q ss_pred             CcceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCcccccc
Q 001554          512 NNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAF  591 (1055)
Q Consensus       512 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~  591 (1055)
                                                    +|..+..+++|+.|++++|+++                            
T Consensus       348 ------------------------------~p~~l~~~~~L~~L~Ls~n~l~----------------------------  369 (968)
T PLN00113        348 ------------------------------IPKNLGKHNNLTVLDLSTNNLT----------------------------  369 (968)
T ss_pred             ------------------------------CChHHhCCCCCcEEECCCCeeE----------------------------
Confidence                                          1122223333333333333322                            


Q ss_pred             CCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCC
Q 001554          592 EKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF  671 (1055)
Q Consensus       592 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~  671 (1055)
                                                                                           +.+|..++.+.
T Consensus       370 ---------------------------------------------------------------------~~~p~~~~~~~  380 (968)
T PLN00113        370 ---------------------------------------------------------------------GEIPEGLCSSG  380 (968)
T ss_pred             ---------------------------------------------------------------------eeCChhHhCcC
Confidence                                                                                 22333344444


Q ss_pred             CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554          672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  751 (1055)
                      +|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.+++.|+.|++++|++++.+|..+..+++|+.|+++
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  460 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA  460 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence            55666666666665555555555555555555555555555555555555555555555555555444444455555555


Q ss_pred             CCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhh
Q 001554          752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQ  831 (1055)
Q Consensus       752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~  831 (1055)
                      +|+                        +.+.+|...   ..++|+.||+++|++++.+|..+                  
T Consensus       461 ~n~------------------------~~~~~p~~~---~~~~L~~L~ls~n~l~~~~~~~~------------------  495 (968)
T PLN00113        461 RNK------------------------FFGGLPDSF---GSKRLENLDLSRNQFSGAVPRKL------------------  495 (968)
T ss_pred             Cce------------------------eeeecCccc---ccccceEEECcCCccCCccChhh------------------
Confidence            554                        444444321   23567778888888877777422                  


Q ss_pred             hhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccC
Q 001554          832 ILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGN  911 (1055)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~  911 (1055)
                                                    ..++.|+.|||++|+++|.+|+.++++++|+.|+|++|+++|.+|..|++
T Consensus       496 ------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  545 (968)
T PLN00113        496 ------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE  545 (968)
T ss_pred             ------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence                                          13567889999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCcCcccCCCCCCcccccccccccCCCCCCCC
Q 001554          912 LKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFP  977 (1055)
Q Consensus       912 L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~L~g~iP~~~~~~~~~~~s~~gn~~lcg~~  977 (1055)
                      +++|+.|||++|+++|.+|..++++++|+.||+++|+++|.||..++|.+|...+|.||+++||.+
T Consensus       546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-56  Score=575.14  Aligned_cols=273  Identities=37%  Similarity=0.580  Sum_probs=236.2

Q ss_pred             EEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCc
Q 001554          651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH  730 (1055)
Q Consensus       651 ~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  730 (1055)
                      .|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++++|+
T Consensus       312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence            44444444555556667777888999999999988889888888999999999999999899989888999999999999


Q ss_pred             ccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCC
Q 001554          731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP  810 (1055)
Q Consensus       731 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p  810 (1055)
                      +.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.++..  +..+++|+.|++++|++.+.+|
T Consensus       392 l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR--KWDMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh--hccCCCCcEEECcCceeeeecC
Confidence            99999999999999999999999999999999999999999999999999887643  4578999999999999999888


Q ss_pred             hHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCC
Q 001554          811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA  890 (1055)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~  890 (1055)
                      ..+                                                 ..+.|+.||+++|+++|.+|..++++++
T Consensus       470 ~~~-------------------------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~  500 (968)
T PLN00113        470 DSF-------------------------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSE  500 (968)
T ss_pred             ccc-------------------------------------------------ccccceEEECcCCccCCccChhhhhhhc
Confidence            421                                                 1356889999999999999999999999


Q ss_pred             CCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCcCcccCCCCC-Cccccccccccc
Q 001554          891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGP-QFATFTAASFEG  969 (1055)
Q Consensus       891 L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~L~g~iP~~~-~~~~~~~~s~~g  969 (1055)
                      |+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..++.+++|+.||+++|+++|.+|... .+.........+
T Consensus       501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~  580 (968)
T PLN00113        501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH  580 (968)
T ss_pred             cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999763 233344455567


Q ss_pred             CCCCC
Q 001554          970 NAGLC  974 (1055)
Q Consensus       970 n~~lc  974 (1055)
                      |+..+
T Consensus       581 N~l~~  585 (968)
T PLN00113        581 NHLHG  585 (968)
T ss_pred             Cccee
Confidence            76554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-36  Score=323.00  Aligned_cols=382  Identities=23%  Similarity=0.329  Sum_probs=238.9

Q ss_pred             CCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccC
Q 001554          334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN  413 (1055)
Q Consensus       334 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~  413 (1055)
                      -+.|++++|++....+..|.++++|+.+++.+|.++ .+|.+..                        ....|+.|+|.+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~------------------------~sghl~~L~L~~  134 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH------------------------ESGHLEKLDLRH  134 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc------------------------cccceeEEeeec
Confidence            356888888888777777888888888888888776 4554432                        223455566666


Q ss_pred             cccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCcc
Q 001554          414 NSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFI  493 (1055)
Q Consensus       414 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i  493 (1055)
                      |.++..-.+.+..++.|+.|||+.|.++ .+|.-.+..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++. +
T Consensus       135 N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-L  212 (873)
T KOG4194|consen  135 NLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-L  212 (873)
T ss_pred             cccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-c
Confidence            6555555555666666666666666665 3333333444567777777777777777778888888888888888874 7


Q ss_pred             chhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCcccc-hhhhCCCCCCEEECcCCCCCCcccccccc
Q 001554          494 TLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWN  572 (1055)
Q Consensus       494 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  572 (1055)
                      |...|+++++|+.|+|..|.|. .+.+..+..+++|+.|.+..|++..+. ..|..+.++++|+|+.|+++..-..|++.
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             CHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence            7788888888888888888876 334445677888888888888888775 46788889999999999988766667665


Q ss_pred             cCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCccccCCCcchhccccceeEE
Q 001554          573 VGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFF  652 (1055)
Q Consensus       573 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l  652 (1055)
                      ..  +|+.|++|+|.|..+...                                                          
T Consensus       292 Lt--~L~~L~lS~NaI~rih~d----------------------------------------------------------  311 (873)
T KOG4194|consen  292 LT--SLEQLDLSYNAIQRIHID----------------------------------------------------------  311 (873)
T ss_pred             cc--hhhhhccchhhhheeecc----------------------------------------------------------
Confidence            44  366666666666554332                                                          


Q ss_pred             EccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCccc
Q 001554          653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA  732 (1055)
Q Consensus       653 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  732 (1055)
                                   ++.-+++|++|+|++|+++..-++.|..+..|++|+|++|.++..-...|..+++|++|||++|.++
T Consensus       312 -------------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls  378 (873)
T KOG4194|consen  312 -------------SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS  378 (873)
T ss_pred             -------------hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence                         2222334444444444444444444444444555555555444444444444455555555555544


Q ss_pred             ccCcc---cccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCC
Q 001554          733 GSLPK---SLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNL  809 (1055)
Q Consensus       733 ~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~  809 (1055)
                      +.+.+   .|.++++|+.|++.+|++..+...+|.+++.|+.|+|.+|.|...-+  ..+..+ .|+.|.+..-.|-|+|
T Consensus       379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~--nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP--NAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc--cccccc-hhhhhhhcccceEEec
Confidence            43332   24445555555555555554444455555555555555555443222  123333 5566666666778899


Q ss_pred             ChHHHhhhhh
Q 001554          810 PARWFQSWRG  819 (1055)
Q Consensus       810 p~~~~~~~~~  819 (1055)
                      ...|+..|-.
T Consensus       456 ql~Wl~qWl~  465 (873)
T KOG4194|consen  456 QLKWLAQWLY  465 (873)
T ss_pred             cHHHHHHHHH
Confidence            9999998843

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-38  Score=325.51  Aligned_cols=487  Identities=26%  Similarity=0.360  Sum_probs=283.5

Q ss_pred             EEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEe
Q 001554           84 IGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDL  163 (1055)
Q Consensus        84 ~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~L  163 (1055)
                      ..++++++.+.- +.+  .+.++..|.+|++.+|.+..  +|++++.+..++.|+.++|+++ ++|++++.+.+|+.|+.
T Consensus        48 ~~lils~N~l~~-l~~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   48 QKLILSHNDLEV-LRE--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC  121 (565)
T ss_pred             hhhhhccCchhh-ccH--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence            445555555542 222  45556666666666666554  4566666666666666666655 56666666666666666


Q ss_pred             cCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEEC
Q 001554          164 SASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNL  243 (1055)
Q Consensus       164 s~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L  243 (1055)
                      ++|.                               +...  ++.++.+..|..++..+|+++. .|++++.+.+|..|++
T Consensus       122 s~n~-------------------------------~~el--~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~  167 (565)
T KOG0472|consen  122 SSNE-------------------------------LKEL--PDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDL  167 (565)
T ss_pred             cccc-------------------------------eeec--CchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhc
Confidence            5553                               3322  4566667777777777777765 6777888888888888


Q ss_pred             CCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC
Q 001554          244 DGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGK  323 (1055)
Q Consensus       244 s~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  323 (1055)
                      .+|++....|..+. ++.|++|+...|-+ +.+|+.++.+.+|+.|++..|.+..  .|.|+++..|+++.++.|.++ .
T Consensus       168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~-~  242 (565)
T KOG0472|consen  168 EGNKLKALPENHIA-MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIE-M  242 (565)
T ss_pred             cccchhhCCHHHHH-HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHH-h
Confidence            88888865555554 88888888888877 6788888888888888888877654  347778888888888788777 4


Q ss_pred             Cccccc-CCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccC
Q 001554          324 LPDSIN-NLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ  402 (1055)
Q Consensus       324 ~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  402 (1055)
                      +|.... .+.++..||+++|++. +.|..+.-+++|++||+++|.+++. |...                        ++
T Consensus       243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L-p~sL------------------------gn  296 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL-PYSL------------------------GN  296 (565)
T ss_pred             hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC-Cccc------------------------cc
Confidence            555544 7788888888888886 6777777788888888888887743 3333                        33


Q ss_pred             CCCccEEEccCcccccccccccccCC---CccEEEc--cCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCC
Q 001554          403 LISLQVLDLRNNSLQGIIPKSLYTKQ---SIESLLL--GQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIK  477 (1055)
Q Consensus       403 l~~L~~L~L~~n~l~~~~~~~l~~l~---~L~~L~L--~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~  477 (1055)
                      + .|+.|-+.+|.+.. +...+-++.   -|++|.=  ..-.++..  ..  +..   ..-+.    .. ..........
T Consensus       297 l-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~s--e~--~~e---~~~t~----~~-~~~~~~~~~i  362 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQS--EG--GTE---TAMTL----PS-ESFPDIYAII  362 (565)
T ss_pred             c-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCC--cc--ccc---ccCCC----CC-Ccccchhhhh
Confidence            3 44444444444331 111111110   0111100  00000000  00  000   00000    00 0011223344


Q ss_pred             CCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCE-EE
Q 001554          478 GLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFH-LD  556 (1055)
Q Consensus       478 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~-L~  556 (1055)
                      +.+.|+++.-+++. +|.+.|..-.+                       .-....+++.|++.++|..+..+..+.. ++
T Consensus       363 ~tkiL~~s~~qlt~-VPdEVfea~~~-----------------------~~Vt~VnfskNqL~elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  363 TTKILDVSDKQLTL-VPDEVFEAAKS-----------------------EIVTSVNFSKNQLCELPKRLVELKELVTDLV  418 (565)
T ss_pred             hhhhhccccccccc-CCHHHHHHhhh-----------------------cceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence            56666666666663 56555543211                       1134556666666677766655544432 33


Q ss_pred             CcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCcccc
Q 001554          557 LSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTT  636 (1055)
Q Consensus       557 Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~  636 (1055)
                      +++|.+. -+|..+..                                                                
T Consensus       419 lsnn~is-fv~~~l~~----------------------------------------------------------------  433 (565)
T KOG0472|consen  419 LSNNKIS-FVPLELSQ----------------------------------------------------------------  433 (565)
T ss_pred             hhcCccc-cchHHHHh----------------------------------------------------------------
Confidence            4443332 22222211                                                                


Q ss_pred             CCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccC
Q 001554          637 NIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIG  716 (1055)
Q Consensus       637 ~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  716 (1055)
                               ++++..|+|++|-+. .+|..++.+..|+.|++|.|+|. .+|.++.....++.+-.++|++....|+.+.
T Consensus       434 ---------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  434 ---------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             ---------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence                     111222222222111 34555566666777777777776 6777777766777777777777766666677


Q ss_pred             CCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCc
Q 001554          717 NECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN  756 (1055)
Q Consensus       717 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  756 (1055)
                      ++.+|.+|||.+|.+. .+|..+++|++|++|++++|.+.
T Consensus       503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            7777777777777777 66777777777777777777775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-34  Score=310.63  Aligned_cols=363  Identities=25%  Similarity=0.298  Sum_probs=276.9

Q ss_pred             CcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccC
Q 001554          214 LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSS  293 (1055)
Q Consensus       214 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (1055)
                      -+.|++++|.+...-+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|...-.+++..++.|+.|||+.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            345666666666655566666666666666666665 4555555555566677776666666666666667777777777


Q ss_pred             CCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCC-C
Q 001554          294 NSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS-L  372 (1055)
Q Consensus       294 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~  372 (1055)
                      |.+.....+.|+.-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++... .
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            766666667777777777777777777766666677777777777777777766666677777777777777776533 3


Q ss_pred             CcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccc
Q 001554          373 PSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS  452 (1055)
Q Consensus       373 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  452 (1055)
                      -.+.+..+++.|.+..|.+. .+.+..|..+.++++|+|+.|+++..-..++..+++|+.|++++|.|...-++. +..+
T Consensus       239 ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Wsft  316 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFT  316 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-hhhc
Confidence            34555557777777777766 444555677899999999999999888889999999999999999987544433 3778


Q ss_pred             cCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCC--CCCcCCccc
Q 001554          453 LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGS--NSNMFPKIG  530 (1055)
Q Consensus       453 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~~~L~  530 (1055)
                      ++|++|+|++|+++..-+.+|..+..|++|.|++|.++. +....|..+.+|++|||++|.+...+...  .+..+++|+
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr  395 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR  395 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh
Confidence            899999999999999999999999999999999999984 77889999999999999999998765543  356799999


Q ss_pred             eeecccCcCcccc-hhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEec
Q 001554          531 TLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL  583 (1055)
Q Consensus       531 ~L~L~~n~l~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~L  583 (1055)
                      .|++.+|+++.|| ..+.++..|++|||.+|.|...-|+.|...   .|++|.+
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m---~Lk~Lv~  446 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM---ELKELVM  446 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc---hhhhhhh
Confidence            9999999999999 589999999999999999987777776544   3555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.8e-37  Score=317.86  Aligned_cols=479  Identities=26%  Similarity=0.343  Sum_probs=278.4

Q ss_pred             CCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEE
Q 001554          187 TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLH  266 (1055)
Q Consensus       187 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~  266 (1055)
                      .-|+.|.++.|.+...  .+.+.++..|.+|++.+|++.. .|++++.+..++.|+.++|+++ .+|+.++.+.+|+.|+
T Consensus        45 v~l~~lils~N~l~~l--~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVL--REDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhhc--cHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            4566666776666533  3345566666666666666654 5556666666666666666665 4566666666666666


Q ss_pred             ccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCC
Q 001554          267 LSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG  346 (1055)
Q Consensus       267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  346 (1055)
                      .++|.+ ..+|++++.+..|+.++..                        +|+++ ..|+.+.++.+|..+++.+|++..
T Consensus       121 ~s~n~~-~el~~~i~~~~~l~dl~~~------------------------~N~i~-slp~~~~~~~~l~~l~~~~n~l~~  174 (565)
T KOG0472|consen  121 CSSNEL-KELPDSIGRLLDLEDLDAT------------------------NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA  174 (565)
T ss_pred             ccccce-eecCchHHHHhhhhhhhcc------------------------ccccc-cCchHHHHHHHHHHhhccccchhh
Confidence            666665 3445555555555555555                        33444 355666666666667777766663


Q ss_pred             CCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCccccccccccccc
Q 001554          347 SIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT  426 (1055)
Q Consensus       347 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  426 (1055)
                      ..| ..-+++.|++||...|-+..                        +|.+ .+.+.+|+.|++..|++. .+| .|..
T Consensus       175 l~~-~~i~m~~L~~ld~~~N~L~t------------------------lP~~-lg~l~~L~~LyL~~Nki~-~lP-ef~g  226 (565)
T KOG0472|consen  175 LPE-NHIAMKRLKHLDCNSNLLET------------------------LPPE-LGGLESLELLYLRRNKIR-FLP-EFPG  226 (565)
T ss_pred             CCH-HHHHHHHHHhcccchhhhhc------------------------CChh-hcchhhhHHHHhhhcccc-cCC-CCCc
Confidence            333 33336666666666666553                        3333 244555566666666655 334 5556


Q ss_pred             CCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCe
Q 001554          427 KQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGT  506 (1055)
Q Consensus       427 l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~  506 (1055)
                      |..|++++++.|++. .+|......+.++..||+.+|++. ..|..++-+.+|++||+++|.+++ +| ..++++ .|+.
T Consensus       227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp-~sLgnl-hL~~  301 (565)
T KOG0472|consen  227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LP-YSLGNL-HLKF  301 (565)
T ss_pred             cHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CC-cccccc-eeee
Confidence            666666666666554 444444345556666666666665 445666666666666666666664 22 235555 6666


Q ss_pred             EECCCCcceeecC----CCCCCcCCccce----eecccC---cCc--ccc----hhhhCCCCCCEEECcCCCCCCccccc
Q 001554          507 LELSENNFSFNVS----GSNSNMFPKIGT----LKLSSC---KIT--EFP----NFLRNQTNLFHLDLSNNRIKGEIPNW  569 (1055)
Q Consensus       507 L~Ls~n~l~~~~~----~~~~~~~~~L~~----L~L~~n---~l~--~ip----~~l~~l~~L~~L~Ls~N~l~~~~p~~  569 (1055)
                      |.+.+|.+.....    ......+..|+.    =.++.-   .-+  ..|    .......+.+.|+++.-+++ .+|..
T Consensus       302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdE  380 (565)
T KOG0472|consen  302 LALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDE  380 (565)
T ss_pred             hhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHH
Confidence            6666665532110    000000000110    000000   000  101    12345667888888888887 66766


Q ss_pred             ccccCC-CCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecCCCccccCCCcchhccccc
Q 001554          570 TWNVGD-GKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINY  648 (1055)
Q Consensus       570 ~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~  648 (1055)
                      .|.... .-....+++.|++..++..                                               +......
T Consensus       381 Vfea~~~~~Vt~VnfskNqL~elPk~-----------------------------------------------L~~lkel  413 (565)
T KOG0472|consen  381 VFEAAKSEIVTSVNFSKNQLCELPKR-----------------------------------------------LVELKEL  413 (565)
T ss_pred             HHHHhhhcceEEEecccchHhhhhhh-----------------------------------------------hHHHHHH
Confidence            655432 1244555555555443321                                               1111111


Q ss_pred             eeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCC
Q 001554          649 AVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQ  728 (1055)
Q Consensus       649 l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  728 (1055)
                      .+.+.+ .|+..+.+|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|+|. .+|.++..+..++.+-.++
T Consensus       414 vT~l~l-snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~  490 (565)
T KOG0472|consen  414 VTDLVL-SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASN  490 (565)
T ss_pred             HHHHHh-hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence            112222 33334467777888888888888888777 77888888888888888888776 5677776667777777777


Q ss_pred             CcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCc
Q 001554          729 NHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD  780 (1055)
Q Consensus       729 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  780 (1055)
                      |++....|+.+.++.+|..|||.+|.+. .+|..++++++|+.|++.+|+|.
T Consensus       491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8877666666777788888888888776 56667777777777777776665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-34  Score=328.67  Aligned_cols=480  Identities=29%  Similarity=0.384  Sum_probs=290.4

Q ss_pred             EccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCC
Q 001554          266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFF  345 (1055)
Q Consensus       266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  345 (1055)
                      |.+.+++ ..+|..+..-..++.|++..|-...-+.+...+.-+|+.|++++|++. ..|..+..+..|+.|+++.|.+.
T Consensus         4 d~s~~~l-~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen    4 DASDEQL-ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             ccccccC-cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence            3444444 244444444444556666655554444333334444666666677665 56677777788888888888776


Q ss_pred             CCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccc
Q 001554          346 GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLY  425 (1055)
Q Consensus       346 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  425 (1055)
                       ..|.+..++.+|+++.|.+|.+. ..|                       .. +..+.+|+.|+++.|.+. .+|..+.
T Consensus        82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP-----------------------~~-~~~lknl~~LdlS~N~f~-~~Pl~i~  134 (1081)
T KOG0618|consen   82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLP-----------------------AS-ISELKNLQYLDLSFNHFG-PIPLVIE  134 (1081)
T ss_pred             -hCchhhhhhhcchhheeccchhh-cCc-----------------------hh-HHhhhcccccccchhccC-CCchhHH
Confidence             56677777888888888777765 222                       22 356677777788877776 6677777


Q ss_pred             cCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCC
Q 001554          426 TKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLG  505 (1055)
Q Consensus       426 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  505 (1055)
                      .++.++.+..++|......+.      ..++.+++..|.+.+.++..+..++.  .|+|++|.+. .   ..+..+.+|+
T Consensus       135 ~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~  202 (1081)
T KOG0618|consen  135 VLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLE  202 (1081)
T ss_pred             hhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchh
Confidence            777777777777732211111      12666677777766666666655555  5666666654 1   1223333333


Q ss_pred             eEECCCCcceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccC
Q 001554          506 TLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH  585 (1055)
Q Consensus       506 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~  585 (1055)
                      .|....|++.                         .+.   -.-++|+.|+.++|.+...                    
T Consensus       203 ~l~c~rn~ls-------------------------~l~---~~g~~l~~L~a~~n~l~~~--------------------  234 (1081)
T KOG0618|consen  203 VLHCERNQLS-------------------------ELE---ISGPSLTALYADHNPLTTL--------------------  234 (1081)
T ss_pred             hhhhhhcccc-------------------------eEE---ecCcchheeeeccCcceee--------------------
Confidence            3333333222                         111   1123444444444444311                    


Q ss_pred             ccccccCCCCCcccccceeEEEccCCCCCCCCCCC-CCccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCcc
Q 001554          586 NMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP-PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP  664 (1055)
Q Consensus       586 N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p  664 (1055)
                                                     .+.. +.+++++|+++|+                         +++ +|
T Consensus       235 -------------------------------~~~p~p~nl~~~dis~n~-------------------------l~~-lp  257 (1081)
T KOG0618|consen  235 -------------------------------DVHPVPLNLQYLDISHNN-------------------------LSN-LP  257 (1081)
T ss_pred             -------------------------------ccccccccceeeecchhh-------------------------hhc-ch
Confidence                                           1111 2233333333333                         332 44


Q ss_pred             ccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCccc-ccCCC
Q 001554          665 LSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCT  743 (1055)
Q Consensus       665 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~  743 (1055)
                      .+++.+.+|+.++..+|+++ .+|..+...++|+.|.+..|.+.. +|.....+++|++|+|..|+|. .+|+. +.-..
T Consensus       258 ~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~  334 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLN  334 (1081)
T ss_pred             HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhh
Confidence            66777777777777777775 667766677777777777777763 4555666777777777777777 44443 33222


Q ss_pred             -CCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhcc
Q 001554          744 -SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK  822 (1055)
Q Consensus       744 -~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~  822 (1055)
                       +|+.|+.+.|++....-..=...+.|+.|++.+|.+++..-  ..+.++..|++|+|++|++. .+|...+.+      
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------  405 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNRLN-SFPASKLRK------  405 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch--hhhccccceeeeeecccccc-cCCHHHHhc------
Confidence             36677777777763332222235677777778887766542  34567777888888888773 456544332      


Q ss_pred             ccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 001554          823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFK  902 (1055)
Q Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  902 (1055)
                                                               +..|+.|+||+|+|+ .+|+++.++..|++|..-+|++.
T Consensus       406 -----------------------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  406 -----------------------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             -----------------------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence                                                     344567788888887 67788888888888888888887


Q ss_pred             cccCccccCcCCCCeEeCCCCcCccc-CcccccCCCCCCeEecCCCc
Q 001554          903 GQIPATLGNLKELGSLDLSHNQLSGK-IPEKLATLNFLSVLKLSQNL  948 (1055)
Q Consensus       903 g~iP~~~~~L~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~l~ls~N~  948 (1055)
                       ..| ++.++++|+.+|+|.|+|+-. +|...-. +.|++|||++|.
T Consensus       444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             -ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence             566 778888888888888888743 3433332 678888888875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3e-34  Score=325.10  Aligned_cols=426  Identities=28%  Similarity=0.346  Sum_probs=241.9

Q ss_pred             cccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCC
Q 001554          229 HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSS  308 (1055)
Q Consensus       229 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~  308 (1055)
                      |.+.+++.+|++|.|.+|.+. ..|..+..+++|++|+++.|.+ +.+|..+..+..++.++.++|. ....   ++...
T Consensus        84 p~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~-~~~~---lg~~~  157 (1081)
T KOG0618|consen   84 PSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNE-KIQR---LGQTS  157 (1081)
T ss_pred             chhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcch-hhhh---hcccc
Confidence            344555555555555555544 4555566666666666666666 4556666666666666666551 1111   11111


Q ss_pred             CCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEccc
Q 001554          309 QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAH  388 (1055)
Q Consensus       309 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~  388 (1055)
                       ++.+++..|.+.+.++..+..++.  .|+|++|.+.   -..+.++.+|+.+....|++.                   
T Consensus       158 -ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-------------------  212 (1081)
T KOG0618|consen  158 -IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-------------------  212 (1081)
T ss_pred             -chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-------------------
Confidence             444444455555555555544444  4555555553   122344444444444444433                   


Q ss_pred             ccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCC
Q 001554          389 NSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL  468 (1055)
Q Consensus       389 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  468 (1055)
                                                   ..    -...++|+.|+.++|.++...+.   ....+|+.+++++|++++.
T Consensus       213 -----------------------------~l----~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~l  256 (1081)
T KOG0618|consen  213 -----------------------------EL----EISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNL  256 (1081)
T ss_pred             -----------------------------eE----EecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcc
Confidence                                         11    01123444444444444422111   2334677777777777744


Q ss_pred             CCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCcccchhhhC
Q 001554          469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRN  548 (1055)
Q Consensus       469 ~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~  548 (1055)
                       |++++.+.+|+.++..+|+++. ++...+                          ...+|+.|.+..|++..+|..+..
T Consensus       257 -p~wi~~~~nle~l~~n~N~l~~-lp~ri~--------------------------~~~~L~~l~~~~nel~yip~~le~  308 (1081)
T KOG0618|consen  257 -PEWIGACANLEALNANHNRLVA-LPLRIS--------------------------RITSLVSLSAAYNELEYIPPFLEG  308 (1081)
T ss_pred             -hHHHHhcccceEecccchhHHh-hHHHHh--------------------------hhhhHHHHHhhhhhhhhCCCcccc
Confidence             4777777778888777777753 443322                          234667777777777788887888


Q ss_pred             CCCCCEEECcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceee
Q 001554          549 QTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLD  628 (1055)
Q Consensus       549 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ld  628 (1055)
                      .++|+.|||..|+|. ..|..+......++..++.+.|++.......                                 
T Consensus       309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~---------------------------------  354 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYE---------------------------------  354 (1081)
T ss_pred             cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccccccccc---------------------------------
Confidence            888888888888886 4554443333333445555555444332111                                 


Q ss_pred             cCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCc
Q 001554          629 YSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL  708 (1055)
Q Consensus       629 ls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  708 (1055)
                                    ......++.|.+.+|.++...-+.+.+...|+.|+|++|++......++.++..|++|+||+|+++
T Consensus       355 --------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  355 --------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             --------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence                          011334455666666666655555666677777777777777333345667777777777777777


Q ss_pred             ccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCcc-ccCccccCCCCCcEEEccCCcCccccCCCc
Q 001554          709 GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNG-SFPFWLETLPQLRVLVLQSNNYDGSIKDTQ  787 (1055)
Q Consensus       709 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  787 (1055)
                       .+|..+.++..|++|...+|++. ..| .+..++.|+.+|+|.|+++. .+|..... ++|++|||++|.-.  .-+..
T Consensus       421 -~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l--~~d~~  494 (1081)
T KOG0618|consen  421 -TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL--VFDHK  494 (1081)
T ss_pred             -hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc--ccchh
Confidence             46677777777777777777777 666 67777777777777777763 33333222 67777777777631  11122


Q ss_pred             ccccCCCCcEEeccCC
Q 001554          788 TANAFALLQIIDISSN  803 (1055)
Q Consensus       788 ~~~~l~~L~~Ldls~N  803 (1055)
                      .+..+..+...|++-|
T Consensus       495 ~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  495 TLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhHHhhhhhheecccC
Confidence            3444555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6.1e-32  Score=291.58  Aligned_cols=368  Identities=23%  Similarity=0.349  Sum_probs=294.8

Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHh
Q 001554          104 FDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLV  183 (1055)
Q Consensus       104 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l  183 (1055)
                      +-++..|-.|+++|.+.|..+|..+..+++++-|.|....+. .+|+.++.|.+|++|.+++|++.        .+...+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~--------~vhGEL   74 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI--------SVHGEL   74 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH--------hhhhhh
Confidence            446677888999999987779999999999999999999987 89999999999999999998763        334468


Q ss_pred             cCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCc
Q 001554          184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQ  263 (1055)
Q Consensus       184 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  263 (1055)
                      ..++.|+.+.+..|++....+|..+-.+..|+.|||++|++.. .|..+..-+++-+|+||+|+|..+....|.+++.|-
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            8899999999999999988889999999999999999999876 888999999999999999999976667788999999


Q ss_pred             EEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCC-CCCcccccCCCCCCEEEccCC
Q 001554          264 YLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFS-GKLPDSINNLALLEDLELSDC  342 (1055)
Q Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n  342 (1055)
                      +|||++|++ ..+|+.+..+.+|++|+|++|++....+..++.+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|
T Consensus       154 fLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            999999999 578888999999999999999998888889999999999999987643 468999999999999999999


Q ss_pred             cCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCccccccccc
Q 001554          343 NFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPK  422 (1055)
Q Consensus       343 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~  422 (1055)
                      .+. .+|..+.++++|+.|+|++|+++..--..                         +...+|+.|+++.|+++ .+|.
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~-------------------------~~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKITELNMTE-------------------------GEWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCceeeeeccH-------------------------HHHhhhhhhccccchhc-cchH
Confidence            997 88999999999999999999987422211                         23345566666666665 5566


Q ss_pred             ccccCCCccEEEccCccccC-CcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcC
Q 001554          423 SLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDL  501 (1055)
Q Consensus       423 ~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l  501 (1055)
                      .+..++.|+.|++.+|+++- -+|..+ +.+.+|+++..++|.+. .+|+.++.|.+|+.|.|+.|++.. +| +.+.-+
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGI-GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LP-eaIHlL  361 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGI-GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LP-EAIHLL  361 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccch-hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-ch-hhhhhc
Confidence            66666666666666665542 233333 55556666666666654 566666666666666666666652 22 455666


Q ss_pred             CCCCeEECCCCc
Q 001554          502 RQLGTLELSENN  513 (1055)
Q Consensus       502 ~~L~~L~Ls~n~  513 (1055)
                      +.|+.||+..|.
T Consensus       362 ~~l~vLDlreNp  373 (1255)
T KOG0444|consen  362 PDLKVLDLRENP  373 (1255)
T ss_pred             CCcceeeccCCc
Confidence            666667766663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.4e-31  Score=285.85  Aligned_cols=361  Identities=25%  Similarity=0.406  Sum_probs=205.3

Q ss_pred             CCcEEEccCCcCC-CCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEcc
Q 001554          309 QLKVIELSETRFS-GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFA  387 (1055)
Q Consensus       309 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~  387 (1055)
                      -.+-+++++|.++ +..|.....++.++.|.|...++. .+|..++.+.+|++|.+++|++....-.....+.|+.+.+.
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence            3445555677777 466777777778888877777775 67777777888888888777776433333333355555555


Q ss_pred             cccCcc-ccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCcccc
Q 001554          388 HNSFTG-TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQ  466 (1055)
Q Consensus       388 ~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  466 (1055)
                      .|++.. .+|... -.+..|+.|||++|++. +.|..+..-.++-.|+|++|+|. .||...+.++..|-.||||+|++.
T Consensus        87 ~N~LKnsGiP~di-F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDI-FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             ccccccCCCCchh-cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence            554432 344443 34666666666666666 55666666666666666666665 445444456666666666666665


Q ss_pred             CCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCc--ccch
Q 001554          467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT--EFPN  544 (1055)
Q Consensus       467 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~ip~  544 (1055)
                       .+|..+..+..|++|+|++|.+.- .....+..+++                         |+.|.+++.+-+  .+|.
T Consensus       164 -~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmts-------------------------L~vLhms~TqRTl~N~Pt  216 (1255)
T KOG0444|consen  164 -MLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTS-------------------------LSVLHMSNTQRTLDNIPT  216 (1255)
T ss_pred             -hcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchh-------------------------hhhhhcccccchhhcCCC
Confidence             344456666666666666665542 22222333334                         444444444322  5666


Q ss_pred             hhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCcc
Q 001554          545 FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASI  624 (1055)
Q Consensus       545 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l  624 (1055)
                      .+..+.+|..+|+|.|.+. .+|..++....  |+.|+||+|+|+.+...                              
T Consensus       217 sld~l~NL~dvDlS~N~Lp-~vPecly~l~~--LrrLNLS~N~iteL~~~------------------------------  263 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLP-IVPECLYKLRN--LRRLNLSGNKITELNMT------------------------------  263 (1255)
T ss_pred             chhhhhhhhhccccccCCC-cchHHHhhhhh--hheeccCcCceeeeecc------------------------------
Confidence            6666666667777766665 55555544332  55555555554433211                              


Q ss_pred             ceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccC
Q 001554          625 IFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN  704 (1055)
Q Consensus       625 ~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  704 (1055)
                                                                .+.-.+|++|++|.|+++ .+|.+++.++.|+.|.+.+
T Consensus       264 ------------------------------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  264 ------------------------------------------EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             ------------------------------------------HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhcc
Confidence                                                      111223455555555555 4555555555555555555


Q ss_pred             CcCc-ccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCc
Q 001554          705 NEFL-GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN  778 (1055)
Q Consensus       705 N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~  778 (1055)
                      |+++ .-+|..++++.+|+.+..++|++. ..|+.+..|..|+.|.|++|++. .+|+++.-++.|++||++.|.
T Consensus       301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            5543 124555555555555555555555 55555555666666666666554 455555556666666666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=5.4e-25  Score=227.62  Aligned_cols=118  Identities=28%  Similarity=0.336  Sum_probs=80.5

Q ss_pred             ccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccC-ccccCCcchhhcccccCcCeeeccCccccCCCCcc
Q 001554          394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQ-NKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPES  472 (1055)
Q Consensus       394 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~  472 (1055)
                      .+|...|..+++|+.|||++|.|+.+-|.+|..++++..|.+.+ |+|+ .+|...+..+..++.|.+.-|++.......
T Consensus        81 ~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~a  159 (498)
T KOG4237|consen   81 SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDA  159 (498)
T ss_pred             cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence            66666678888888888888888888888888888877776666 6665 455555566666777777666666666666


Q ss_pred             ccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCc
Q 001554          473 IFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN  513 (1055)
Q Consensus       473 l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  513 (1055)
                      |..++++..|.+.+|.+. .+....|..+.+++.+.+..|.
T Consensus       160 l~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  160 LRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             HHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence            666666666666666655 2444455555555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=1.8e-24  Score=223.84  Aligned_cols=416  Identities=21%  Similarity=0.255  Sum_probs=221.6

Q ss_pred             CcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCC-CcceeecCCCCCCcCCcccee
Q 001554          454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE-NNFSFNVSGSNSNMFPKIGTL  532 (1055)
Q Consensus       454 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L  532 (1055)
                      .-.+++|..|+|+...|.+|..+++|+.|||++|.|+ .|.++.|+++.+|.+|-+.+ |+|+.. +...+..+..++.|
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDL-PKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhh-hhhHhhhHHHHHHH
Confidence            3455666666666666666666666666666666666 35556666666665555554 555532 22334445555566


Q ss_pred             ecccCcCcccc-hhhhCCCCCCEEECcCCCCCCcccc-cccccCCCCceEEeccCccccccCCCCCcccccceeEEEccC
Q 001554          533 KLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPN-WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHS  610 (1055)
Q Consensus       533 ~L~~n~l~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~  610 (1055)
                      .+.-|++..++ +.++.++++..|.+.+|.+. .++. .+....                           .++.+.+..
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~---------------------------~i~tlhlA~  197 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLA---------------------------AIKTLHLAQ  197 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchh---------------------------ccchHhhhc
Confidence            66666666554 56777777777777777765 2222 221111                           222223322


Q ss_pred             CCCCCCCCCCCCccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCcc
Q 001554          611 NMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC  690 (1055)
Q Consensus       611 n~l~~~~p~~~~~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  690 (1055)
                      |.+...-     ++..+               ..        ++      -..|..++......-..+.++++...-+..
T Consensus       198 np~icdC-----nL~wl---------------a~--------~~------a~~~ietsgarc~~p~rl~~~Ri~q~~a~k  243 (498)
T KOG4237|consen  198 NPFICDC-----NLPWL---------------AD--------DL------AMNPIETSGARCVSPYRLYYKRINQEDARK  243 (498)
T ss_pred             Ccccccc-----ccchh---------------hh--------HH------hhchhhcccceecchHHHHHHHhcccchhh
Confidence            2221110     00000               00        00      001111222222222233333333222222


Q ss_pred             ccCC-CcccEEeccCCcCcccCC-cccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCC
Q 001554          691 LVSS-NILKVLKLRNNEFLGTVP-QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQ  768 (1055)
Q Consensus       691 l~~l-~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  768 (1055)
                      |... .++..=-.+.+...+.-| ..|..+++|++|+|++|+|+++-+.+|.+...+++|.|..|+|...-...|.++..
T Consensus       244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~  323 (498)
T KOG4237|consen  244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG  323 (498)
T ss_pred             hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence            2111 111111122222333333 34667777777777777777777777777777777777777776666666777777


Q ss_pred             CcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhcccccc--chhhhhhhhhhhhccccccc
Q 001554          769 LRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKE--SQESQILKFVYLELSNLYYQ  846 (1055)
Q Consensus       769 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  846 (1055)
                      |++|+|.+|+|+-..|  ..+..+.+|..|.+-.|+|.|+|-..|+..|-.-+.....  -+..+.++...  +.+..+.
T Consensus       324 L~tL~L~~N~it~~~~--~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~--~~dv~~~  399 (498)
T KOG4237|consen  324 LKTLSLYDNQITTVAP--GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIP--ISDVAFG  399 (498)
T ss_pred             ceeeeecCCeeEEEec--ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcccc--chhcccc
Confidence            7777777777765543  3456667788888899999999999999999554331111  11111111000  0000000


Q ss_pred             c-------ceEEeecCchhHHHhhcccc-cEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeE
Q 001554          847 D-------SVTLMNKGLSMELAKILTIF-TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSL  918 (1055)
Q Consensus       847 ~-------~~~~~~~~~~~~~~~~l~~l-~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~L  918 (1055)
                      +       .......+.-.   ...+-+ +..--|++.+. .+|+.+.  .....|.|.+|+++ .||.+  .++.| .+
T Consensus       400 ~~~c~~~ee~~~~~s~~cP---~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~  469 (498)
T KOG4237|consen  400 DFRCGGPEELGCLTSSPCP---PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LL  469 (498)
T ss_pred             ccccCCccccCCCCCCCCC---CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hc
Confidence            0       00000000000   001111 22334555554 4444332  24457888999998 78887  77888 89


Q ss_pred             eCCCCcCcccCcccccCCCCCCeEecCCC
Q 001554          919 DLSHNQLSGKIPEKLATLNFLSVLKLSQN  947 (1055)
Q Consensus       919 dLs~N~lsg~ip~~l~~l~~L~~l~ls~N  947 (1055)
                      |||+|+++-.--..|+++++|.+|-+|||
T Consensus       470 dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  470 DLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccccCceehhhcccccchhhhheeEEecC
Confidence            99999998877788999999999999987

>PLN03210 Resistant to P

Probab=99.87  E-value=4.8e-21  Score=246.15  Aligned_cols=362  Identities=23%  Similarity=0.240  Sum_probs=234.1

Q ss_pred             CCCcEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCCCC-----CCCCccCCCCC-CCCEEeCCCCCCCCCCChhc
Q 001554           79 RTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYS-----SPFPSGFDRLF-SLTHLNLSYSGFSGHIPLEI  152 (1055)
Q Consensus        79 ~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~lp~~l~~l~-~L~~L~Ls~n~~~~~~p~~l  152 (1055)
                      .+.+|+++.+.-..+...-....++..+++|++|.+..+....     ..+|+.+..++ +||.|++.++.+. .+|..+
T Consensus       530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f  608 (1153)
T PLN03210        530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF  608 (1153)
T ss_pred             ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence            3467777766544433211112267889999999997654321     13677777764 6999999999886 888777


Q ss_pred             ccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccc
Q 001554          153 SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSL  232 (1055)
Q Consensus       153 ~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l  232 (1055)
                       ...+|++|+++++.+..        ++..+..+++|+.|+++++.....  .+.++.+++|++|+|++|.....+|..+
T Consensus       609 -~~~~L~~L~L~~s~l~~--------L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~ls~l~~Le~L~L~~c~~L~~lp~si  677 (1153)
T PLN03210        609 -RPENLVKLQMQGSKLEK--------LWDGVHSLTGLRNIDLRGSKNLKE--IPDLSMATNLETLKLSDCSSLVELPSSI  677 (1153)
T ss_pred             -CccCCcEEECcCccccc--------cccccccCCCCCEEECCCCCCcCc--CCccccCCcccEEEecCCCCccccchhh
Confidence             57899999999986532        334467788899999887653222  1246778888888888888777788888


Q ss_pred             cCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcE
Q 001554          233 SKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKV  312 (1055)
Q Consensus       233 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~  312 (1055)
                      .++++|+.|++++|.....+|..+ ++++|++|++++|.....+|..   ..+|++|++++|.+..  ++....+++|++
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~~l~~L~~  751 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNLRLENLDE  751 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--cccccccccccc
Confidence            888888888888876555667655 6788888888888766666643   4578888888776533  233334667777


Q ss_pred             EEccCCcCC-------CCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEE
Q 001554          313 IELSETRFS-------GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK  385 (1055)
Q Consensus       313 L~L~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  385 (1055)
                      |.+.++...       ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|......+|++|+
T Consensus       752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~  831 (1153)
T PLN03210        752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD  831 (1153)
T ss_pred             ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence            777653321       1111122334677888888877777777778888888888887776555555544444555555


Q ss_pred             cccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccc
Q 001554          386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKL  465 (1055)
Q Consensus       386 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l  465 (1055)
                      +++|.....+|..    ..+|++|++++|.++ .+|.++..+                         ++|+.|++++|.-
T Consensus       832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l-------------------------~~L~~L~L~~C~~  881 (1153)
T PLN03210        832 LSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKF-------------------------SNLSFLDMNGCNN  881 (1153)
T ss_pred             CCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcC-------------------------CCCCEEECCCCCC
Confidence            5555444333321    234555555555544 344444444                         4555555555433


Q ss_pred             cCCCCccccCCCCCCEEEccCCC
Q 001554          466 QGLVPESIFQIKGLNVLRLSSNK  488 (1055)
Q Consensus       466 ~~~~p~~l~~l~~L~~L~L~~n~  488 (1055)
                      -..+|..+..+++|+.+++++|.
T Consensus       882 L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        882 LQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCccCcccccccCCCeeecCCCc
Confidence            33455556667777777777764

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=1.7e-21  Score=230.94  Aligned_cols=93  Identities=30%  Similarity=0.348  Sum_probs=41.0

Q ss_pred             CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554          672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  751 (1055)
                      +|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..   ..+|+.|+|+
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVS  350 (788)
T ss_pred             hcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecC
Confidence            3445555555554 33331   2345555555555553 2221   123445555555555 23321   1345555555


Q ss_pred             CCcCccccCccccCCCCCcEEEccCCcCc
Q 001554          752 KNQLNGSFPFWLETLPQLRVLVLQSNNYD  780 (1055)
Q Consensus       752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  780 (1055)
                      +|+|++ +|..   .++|+.|++++|+++
T Consensus       351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~  375 (788)
T PRK15387        351 DNQLAS-LPTL---PSELYKLWAYNNRLT  375 (788)
T ss_pred             CCccCC-CCCC---Ccccceehhhccccc
Confidence            555552 2321   123444444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3e-21  Score=228.82  Aligned_cols=242  Identities=26%  Similarity=0.314  Sum_probs=175.2

Q ss_pred             ccceeecCCCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEec
Q 001554          623 SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKL  702 (1055)
Q Consensus       623 ~l~~Ldls~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  702 (1055)
                      +++.|++++|+++. +|.    ..++|++|++++|+++. +|..   .++|+.|++++|.++ .+|...   .+|+.|++
T Consensus       223 ~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L  289 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI  289 (788)
T ss_pred             CCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence            34444444444442 222    13455666666666663 3432   357888999999887 555533   46888999


Q ss_pred             cCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccc
Q 001554          703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS  782 (1055)
Q Consensus       703 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~  782 (1055)
                      ++|+++. +|..   .++|+.|++++|++++ +|...   .+|+.|++++|++++ +|..   ..+|++|+|++|+|++ 
T Consensus       290 s~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-  356 (788)
T PRK15387        290 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-  356 (788)
T ss_pred             cCCcccc-cccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCC-
Confidence            9998884 4542   4678999999999884 45422   467788899998874 5532   2478899999998885 


Q ss_pred             cCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHh
Q 001554          783 IKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAK  862 (1055)
Q Consensus       783 ~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (1055)
                      +|.     ..++|+.|++++|+++. +|.                                                   
T Consensus       357 LP~-----lp~~L~~L~Ls~N~L~~-LP~---------------------------------------------------  379 (788)
T PRK15387        357 LPT-----LPSELYKLWAYNNRLTS-LPA---------------------------------------------------  379 (788)
T ss_pred             CCC-----CCcccceehhhcccccc-Ccc---------------------------------------------------
Confidence            332     13567888888888873 452                                                   


Q ss_pred             hcccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeE
Q 001554          863 ILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVL  942 (1055)
Q Consensus       863 ~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l  942 (1055)
                      ....|+.||+++|+|++ +|...   +.|+.|++|+|+|++ ||...   .+|+.|||++|+|+ .+|..+.+++.|+.|
T Consensus       380 l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L  450 (788)
T PRK15387        380 LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV  450 (788)
T ss_pred             cccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence            12357889999999995 67543   678999999999994 88653   56788999999998 799999999999999


Q ss_pred             ecCCCcCcccCCCC
Q 001554          943 KLSQNLLVGEIPRG  956 (1055)
Q Consensus       943 ~ls~N~L~g~iP~~  956 (1055)
                      +|++|+|+|.+|..
T Consensus       451 dLs~N~Ls~~~~~~  464 (788)
T PRK15387        451 NLEGNPLSERTLQA  464 (788)
T ss_pred             ECCCCCCCchHHHH
Confidence            99999999998864

>PLN03210 Resistant to P

Probab=99.86  E-value=2.9e-20  Score=238.96  Aligned_cols=339  Identities=22%  Similarity=0.247  Sum_probs=199.9

Q ss_pred             hhhcCCCCCcEEeCCCCcC------CCCCcccccCCC-CCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCc
Q 001554          206 PILSILSNLRILSLPDCHV------AGPIHSSLSKLQ-LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE  278 (1055)
Q Consensus       206 ~~l~~l~~L~~L~L~~~~l------~~~~~~~l~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (1055)
                      ..|.+|++|+.|.+..+..      ...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|.+. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            3455666666666644321      223444454443 4666666666554 344444 3456666666666653 3455


Q ss_pred             ccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 001554          279 KIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTEL  358 (1055)
Q Consensus       279 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  358 (1055)
                      .+..+++|+.|+++++..                        .+.+|. ++.+++|+.|++++|.....+|..+.++++|
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~------------------------l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKN------------------------LKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccccCCCCCEEECCCCCC------------------------cCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            555566666666665432                        223332 4444445555554444444444444455555


Q ss_pred             CEEEeecCCCCCCCCcccccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCc
Q 001554          359 INIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQN  438 (1055)
Q Consensus       359 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  438 (1055)
                      +.|++++|...+.+|......+|+.|++++|...+.+|..    ..+|++|++++|.+. .+|..+ .+++|++|.+.++
T Consensus       684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~  757 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEM  757 (1153)
T ss_pred             CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence            5555554443334444333334555555555444344321    345666666666654 344433 4566666666553


Q ss_pred             cccC------CcchhhcccccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCC
Q 001554          439 KFHG------QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN  512 (1055)
Q Consensus       439 ~l~~------~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n  512 (1055)
                      ....      .++.......++|+.|++++|.....+|.+++++++|+.|++++|...+.+|...  .+++|+.|++++|
T Consensus       758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c  835 (1153)
T PLN03210        758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGC  835 (1153)
T ss_pred             chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence            3110      1111222345689999999998888899999999999999999987655666443  6889999999998


Q ss_pred             cceeecCCCCCCcCCccceeecccCcCcccchhhhCCCCCCEEECcCCCCCCcccccccccCCCCceEEeccCc
Q 001554          513 NFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN  586 (1055)
Q Consensus       513 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N  586 (1055)
                      ......+    ....+|++|++++|.++.+|.++..+++|+.|++++|+--..+|......  .+|+.+++++|
T Consensus       836 ~~L~~~p----~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L--~~L~~L~l~~C  903 (1153)
T PLN03210        836 SRLRTFP----DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL--KHLETVDFSDC  903 (1153)
T ss_pred             Ccccccc----ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc--cCCCeeecCCC
Confidence            5432222    23468999999999999999999999999999999865444555543322  23555555444

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=1.8e-19  Score=215.57  Aligned_cols=76  Identities=30%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554          672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  751 (1055)
                      +|+.|++++|++. .+|..+.  .+|+.|++++|+++. +|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|+++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence            3444555555444 3443332  244444444444442 333322  24444444444444 2332221  234444444


Q ss_pred             CCcCc
Q 001554          752 KNQLN  756 (1055)
Q Consensus       752 ~N~l~  756 (1055)
                      +|+++
T Consensus       313 ~N~Lt  317 (754)
T PRK15370        313 SNSLT  317 (754)
T ss_pred             CCccc
Confidence            44444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.4e-18  Score=208.13  Aligned_cols=291  Identities=24%  Similarity=0.355  Sum_probs=165.7

Q ss_pred             CCCEEECcCCCCCCcccccccccCCCCceEEeccCccccccCCCCCcccccceeEEEccCCCCCCCCCCCCCccceeecC
Q 001554          551 NLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYS  630 (1055)
Q Consensus       551 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~Ldls  630 (1055)
                      +...|+++++.++ .+|..+.    ..++.|++++|+++.++...    ..+|+.|++++|.++.               
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~Lts---------------  234 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL----QGNIKTLYANSNQLTS---------------  234 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh----ccCCCEEECCCCcccc---------------
Confidence            5678888888887 4565432    24777888888777654322    1256666666666553               


Q ss_pred             CCccccCCCcchhccccceeEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCccc
Q 001554          631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT  710 (1055)
Q Consensus       631 ~n~l~~~~p~~~~~~~~~l~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  710 (1055)
                             +|..+.   ..++.|++++|++. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ 
T Consensus       235 -------LP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-  297 (754)
T PRK15370        235 -------IPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-  297 (754)
T ss_pred             -------CChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-
Confidence                   222221   23445555555555 3454443  35777777777776 4565543  367777777777764 


Q ss_pred             CCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccc
Q 001554          711 VPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN  790 (1055)
Q Consensus       711 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  790 (1055)
                      +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|++.. +|...   
T Consensus       298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l---  365 (754)
T PRK15370        298 LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL---  365 (754)
T ss_pred             Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh---
Confidence            344332  35777777777777 3454432  567777777777764 554443  567777777777652 33211   


Q ss_pred             cCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEE
Q 001554          791 AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSI  870 (1055)
Q Consensus       791 ~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  870 (1055)
                       .+.|+.|++++|+++ .+|....                                                  ..|+.|
T Consensus       366 -p~~L~~LdLs~N~Lt-~LP~~l~--------------------------------------------------~sL~~L  393 (754)
T PRK15370        366 -PPTITTLDVSRNALT-NLPENLP--------------------------------------------------AALQIM  393 (754)
T ss_pred             -cCCcCEEECCCCcCC-CCCHhHH--------------------------------------------------HHHHHH
Confidence             246777777777776 3443210                                                  124556


Q ss_pred             EccCCcccccCcccc----cCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCccc-CcccccCCCCCCeEecC
Q 001554          871 DVSNNQFEGEIPEML----GDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK-IPEKLATLNFLSVLKLS  945 (1055)
Q Consensus       871 dLs~N~l~g~ip~~~----~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~l~ls  945 (1055)
                      |+++|+|+ .+|+.+    +.++.+..|+|.+|.|+.      ..+.+|+.| ++.+.+.|. |+.+++.++.++....-
T Consensus       394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l  465 (754)
T PRK15370        394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIVRVTRPL  465 (754)
T ss_pred             hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccccccchH
Confidence            77777776 444433    334666777777777762      233344444 344555443 34444555555444334


Q ss_pred             CCcCcccCC
Q 001554          946 QNLLVGEIP  954 (1055)
Q Consensus       946 ~N~L~g~iP  954 (1055)
                      ++.+.+-+|
T Consensus       466 ~~a~~~Wl~  474 (754)
T PRK15370        466 HQAVQGWLT  474 (754)
T ss_pred             HHHHhccCC
Confidence            444444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.6e-18  Score=194.18  Aligned_cols=135  Identities=27%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             ccceeEEEccCCcCcCC----ccccccCCCCCCEEeccCCCCCC------CCCccccCCCcccEEeccCCcCcccCCccc
Q 001554          646 INYAVFFSLASNNLSGG----IPLSLCNAFDLQVLDLSDNHLTG------SIPSCLVSSNILKVLKLRNNEFLGTVPQVI  715 (1055)
Q Consensus       646 ~~~l~~l~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  715 (1055)
                      +..++.++++++.++..    ++..+...++++.++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            33455555555554332    33334444455555555555441      122233344455555555555543333333


Q ss_pred             CCCCC---ccEEeCCCCcccc----cCcccccCC-CCCcEEECCCCcCccc----cCccccCCCCCcEEEccCCcCc
Q 001554          716 GNECS---LRTLDLSQNHLAG----SLPKSLSKC-TSLEVLDVGKNQLNGS----FPFWLETLPQLRVLVLQSNNYD  780 (1055)
Q Consensus       716 ~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~  780 (1055)
                      ..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            33322   5555555554442    112223333 4445555555544421    2223333444444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.69  E-value=3.3e-18  Score=191.59  Aligned_cols=257  Identities=29%  Similarity=0.293  Sum_probs=190.6

Q ss_pred             EEccCCcCc-CCccccccCCCCCCEEeccCCCCCCC----CCccccCCCcccEEeccCCcCcc------cCCcccCCCCC
Q 001554          652 FSLASNNLS-GGIPLSLCNAFDLQVLDLSDNHLTGS----IPSCLVSSNILKVLKLRNNEFLG------TVPQVIGNECS  720 (1055)
Q Consensus       652 l~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~  720 (1055)
                      |+|..+.++ +..+..+..+.+|+.|+++++.++..    ++..+...+.++.|+++++.+.+      .++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            455566665 34445556677899999999998642    55666777889999999998872      34456778889


Q ss_pred             ccEEeCCCCcccccCcccccCCCC---CcEEECCCCcCcc----ccCccccCC-CCCcEEEccCCcCccccCC--Ccccc
Q 001554          721 LRTLDLSQNHLAGSLPKSLSKCTS---LEVLDVGKNQLNG----SFPFWLETL-PQLRVLVLQSNNYDGSIKD--TQTAN  790 (1055)
Q Consensus       721 L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~~~~--~~~~~  790 (1055)
                      |+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++....  ...+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            999999999998777777766665   9999999999983    334456677 8999999999999853221  12345


Q ss_pred             cCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEE
Q 001554          791 AFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSI  870 (1055)
Q Consensus       791 ~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  870 (1055)
                      .++.|+.|++++|.+++.......                                            ......+.|+.|
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~--------------------------------------------~~l~~~~~L~~L  198 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALA--------------------------------------------EGLKANCNLEVL  198 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHH--------------------------------------------HHHHhCCCCCEE
Confidence            667899999999998752111110                                            001123578999


Q ss_pred             EccCCccccc----CcccccCCCCCCEEECCCCccccccCccccC-----cCCCCeEeCCCCcCc----ccCcccccCCC
Q 001554          871 DVSNNQFEGE----IPEMLGDFDALLVLNMSNNNFKGQIPATLGN-----LKELGSLDLSHNQLS----GKIPEKLATLN  937 (1055)
Q Consensus       871 dLs~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~-----L~~L~~LdLs~N~ls----g~ip~~l~~l~  937 (1055)
                      ++++|.+++.    ++..+..+++|+.|++++|.+++..+..+..     .+.|++|++++|.++    +.++..+..++
T Consensus       199 ~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~  278 (319)
T cd00116         199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE  278 (319)
T ss_pred             eccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC
Confidence            9999999754    4455677889999999999999754444433     379999999999997    34556677789


Q ss_pred             CCCeEecCCCcCccc
Q 001554          938 FLSVLKLSQNLLVGE  952 (1055)
Q Consensus       938 ~L~~l~ls~N~L~g~  952 (1055)
                      .|+.+|+++|+++..
T Consensus       279 ~L~~l~l~~N~l~~~  293 (319)
T cd00116         279 SLLELDLRGNKFGEE  293 (319)
T ss_pred             CccEEECCCCCCcHH
Confidence            999999999998754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03150 hypothetical protein; Provisional

Probab=99.66  E-value=1.5e-16  Score=190.61  Aligned_cols=118  Identities=36%  Similarity=0.647  Sum_probs=106.9

Q ss_pred             cccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEecC
Q 001554          866 IFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLS  945 (1055)
Q Consensus       866 ~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls  945 (1055)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+|+|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCCC--cccccccccccCCCCCCCCCCCCCC
Q 001554          946 QNLLVGEIPRGPQ--FATFTAASFEGNAGLCGFPLPKACQ  983 (1055)
Q Consensus       946 ~N~L~g~iP~~~~--~~~~~~~s~~gn~~lcg~~~~~~c~  983 (1055)
                      +|+++|.+|....  +.......+.||+++||.|..+.|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  2233456789999999987666775

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=2.4e-17  Score=151.64  Aligned_cols=165  Identities=32%  Similarity=0.584  Sum_probs=114.8

Q ss_pred             CCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEE
Q 001554          694 SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLV  773 (1055)
Q Consensus       694 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  773 (1055)
                      +...+.|.|++|+++ .+|..++.+.+|+.|++.+|+|+ .+|.+++.+++|+.|+++-|++. ..|..|+.+|.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            344555556666655 34555666666666666666666 56666677777777777777765 5666666666666666


Q ss_pred             ccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEee
Q 001554          774 LQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMN  853 (1055)
Q Consensus       774 L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1055)
                      |.+|++...                         .+|-.+|                                       
T Consensus       109 ltynnl~e~-------------------------~lpgnff---------------------------------------  124 (264)
T KOG0617|consen  109 LTYNNLNEN-------------------------SLPGNFF---------------------------------------  124 (264)
T ss_pred             ccccccccc-------------------------cCCcchh---------------------------------------
Confidence            666654311                         1121111                                       


Q ss_pred             cCchhHHHhhcccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccc
Q 001554          854 KGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL  933 (1055)
Q Consensus       854 ~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l  933 (1055)
                               .+..++.|+|+.|.|. .+|+++|++++|+.|.+..|.+- +.|.++|.|+.|+.|.+.+|+++ .+|+++
T Consensus       125 ---------~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  125 ---------YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             ---------HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence                     1344566778889887 78999999999999999999988 78999999999999999999998 567777


Q ss_pred             cCCC
Q 001554          934 ATLN  937 (1055)
Q Consensus       934 ~~l~  937 (1055)
                      +++.
T Consensus       193 ~~l~  196 (264)
T KOG0617|consen  193 ANLD  196 (264)
T ss_pred             hhhh
Confidence            7654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.55  E-value=6.4e-17  Score=148.85  Aligned_cols=167  Identities=27%  Similarity=0.341  Sum_probs=124.3

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHH
Q 001554          102 SLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEK  181 (1055)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~  181 (1055)
                      .++++.+.+.|.||+|.++.  +|..|..+.+|++|++++|++. ++|.+++.+++|+.|+++-|++        ..+++
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--------~~lpr   96 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--------NILPR   96 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--------hcCcc
Confidence            56677777778888888766  6777888888888888888876 7788888888888888877654        23455


Q ss_pred             HhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCC
Q 001554          182 LVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSS  261 (1055)
Q Consensus       182 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~  261 (1055)
                      .++.++.|+.|||.+|++.....|..|-.++.|+.|.|++|.+.- +|..++++++|+.|.+..|.+- .+|..++.++.
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            566777777777777777766667777777778888888887754 6777888888888888888776 56777888888


Q ss_pred             CcEEEccCCcCCCccCcccCC
Q 001554          262 LQYLHLSLCGLYGRVPEKIFL  282 (1055)
Q Consensus       262 L~~L~L~~n~l~~~~p~~l~~  282 (1055)
                      |++|++.+|+++ .+|..+++
T Consensus       175 lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             HHHHhcccceee-ecChhhhh
Confidence            888888888874 45555544

>PLN03150 hypothetical protein; Provisional

Probab=99.51  E-value=8.2e-14  Score=167.16  Aligned_cols=128  Identities=28%  Similarity=0.539  Sum_probs=98.4

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCc----ccceeEecC--CCC--cEEEEEcCCCccccccCCC
Q 001554           29 SGRCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCC----SWDGVTCDP--RTG--HVIGLDISSSFITGGINGS  100 (1055)
Q Consensus        29 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~~l~~W~~~~~~c----~w~gv~C~~--~~~--~v~~L~L~~~~l~g~~~~~  100 (1055)
                      ...+.++|.+||+++|+++..+.       ..+|. +..||    .|.||.|+.  .++  +|+.|+|+++.+.|.+|. 
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~-------~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-  436 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPL-------RFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-  436 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcc-------cCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-
Confidence            44567889999999999985432       13796 44553    799999953  222  588999999999888877 


Q ss_pred             CCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCC
Q 001554          101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASG  167 (1055)
Q Consensus       101 ~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~  167 (1055)
                       .++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.++|.+|..+++|++|++|+|++|.
T Consensus       437 -~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        437 -DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             -HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence             788888888888888888776 77778888888888888888887788777777777777777654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.19  E-value=7.6e-13  Score=144.40  Aligned_cols=114  Identities=31%  Similarity=0.468  Sum_probs=71.9

Q ss_pred             CccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccC
Q 001554          662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSK  741 (1055)
Q Consensus       662 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  741 (1055)
                      .+|..++.+..|+.+.++.|.+. .+|.+++++..|++|||+.|+++ ..|..++.++ |+.|-+++|+++ .+|+.++.
T Consensus        89 elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~  164 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGL  164 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCccccc
Confidence            35555555566666666666666 66666666666677777777666 4455555543 666666666666 56666666


Q ss_pred             CCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCc
Q 001554          742 CTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD  780 (1055)
Q Consensus       742 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  780 (1055)
                      ...|..||.+.|.+. .+|..++.+.+|+.|.++.|++.
T Consensus       165 ~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  165 LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE  202 (722)
T ss_pred             chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh
Confidence            666666666666665 45555666666666666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=2.5e-12  Score=140.47  Aligned_cols=123  Identities=28%  Similarity=0.376  Sum_probs=88.4

Q ss_pred             eEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCC
Q 001554          650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN  729 (1055)
Q Consensus       650 ~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  729 (1055)
                      +.+.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|+.|++..|++.. +|+.++. -.|..||++.|
T Consensus       146 kvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScN  221 (722)
T KOG0532|consen  146 KVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCN  221 (722)
T ss_pred             eeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccC
Confidence            35555555554 45666777777888888888887 778888888888888888888774 5555663 35788888888


Q ss_pred             cccccCcccccCCCCCcEEECCCCcCccccCccc---cCCCCCcEEEccCCc
Q 001554          730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWL---ETLPQLRVLVLQSNN  778 (1055)
Q Consensus       730 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~  778 (1055)
                      +++ .+|..|.+++.|++|-|.+|.+. ..|..+   +...-.++|+.+-++
T Consensus       222 kis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  222 KIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            888 78888888888888888888886 444443   234445677777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=9.5e-11  Score=135.04  Aligned_cols=102  Identities=36%  Similarity=0.483  Sum_probs=56.0

Q ss_pred             EEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCC-CccEEeCCCCcccccCcccccCCCCCcEEECCCC
Q 001554          675 VLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNEC-SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKN  753 (1055)
Q Consensus       675 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  753 (1055)
                      .++++.|.+... +..+...+.++.|++.+|+++. +|....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            455555555322 2223333556666666666663 333344442 6666666666666 45455666666666666666


Q ss_pred             cCccccCccccCCCCCcEEEccCCcCc
Q 001554          754 QLNGSFPFWLETLPQLRVLVLQSNNYD  780 (1055)
Q Consensus       754 ~l~~~~p~~l~~l~~L~~L~L~~N~l~  780 (1055)
                      +++ .+|...+.++.|+.|++++|++.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc
Confidence            665 33433335555666666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.08  E-value=1.3e-10  Score=133.92  Aligned_cols=199  Identities=35%  Similarity=0.512  Sum_probs=136.0

Q ss_pred             EEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCC-cccEEeccCCcCcccCCcccCCCCCccEEeCCCCc
Q 001554          652 FSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSN-ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNH  730 (1055)
Q Consensus       652 l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  730 (1055)
                      +.+..|.+...+. .+...+.++.|++.+|+++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus        98 l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence            4444454432222 2334467899999999999 7777777774 8999999999988 455678899999999999999


Q ss_pred             ccccCcccccCCCCCcEEECCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCC
Q 001554          731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP  810 (1055)
Q Consensus       731 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p  810 (1055)
                      ++ .+|...+..+.|+.|++++|++. .+|........|++|.+++|++...+.   ...                    
T Consensus       175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~---~~~--------------------  229 (394)
T COG4886         175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS---SLS--------------------  229 (394)
T ss_pred             hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch---hhh--------------------
Confidence            99 67766668899999999999998 556555555557777777664211110   001                    


Q ss_pred             hHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcccccEEEccCCcccccCcccccCCCC
Q 001554          811 ARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA  890 (1055)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~LdLs~N~l~g~ip~~~~~l~~  890 (1055)
                                                                          .+..+..+.+++|++. .+|..++.+..
T Consensus       230 ----------------------------------------------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~  256 (394)
T COG4886         230 ----------------------------------------------------NLKNLSGLELSNNKLE-DLPESIGNLSN  256 (394)
T ss_pred             ----------------------------------------------------hcccccccccCCceee-eccchhccccc
Confidence                                                                2233444456666665 33566677777


Q ss_pred             CCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccc
Q 001554          891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL  933 (1055)
Q Consensus       891 L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l  933 (1055)
                      ++.|++++|+++ .++. ++.+.+++.||+++|.++...|...
T Consensus       257 l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         257 LETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence            777777777777 4444 7777777777777777776665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.07  E-value=6.7e-12  Score=129.89  Aligned_cols=38  Identities=18%  Similarity=0.314  Sum_probs=23.7

Q ss_pred             CCCCCEEEccCCcCCC----CCcccccCCCCCCEEEeecCCC
Q 001554          331 LALLEDLELSDCNFFG----SIPSSFGNLTELINIDFSRNNF  368 (1055)
Q Consensus       331 l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l  368 (1055)
                      .++|++|.+.+|.++.    .+...+...+.|+.|+|++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            5667777777776653    1222344567777777777777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=1.9e-11  Score=126.54  Aligned_cols=241  Identities=20%  Similarity=0.217  Sum_probs=122.9

Q ss_pred             CcEEEEEcCCCccccc----cCCCCCccCCCCCCeeeCCCCCCCCC---CCCc-------cCCCCCCCCEEeCCCCCCCC
Q 001554           81 GHVIGLDISSSFITGG----INGSSSLFDLQRLQHLNLADNSLYSS---PFPS-------GFDRLFSLTHLNLSYSGFSG  146 (1055)
Q Consensus        81 ~~v~~L~L~~~~l~g~----~~~~~~l~~l~~L~~L~Ls~n~~~~~---~lp~-------~l~~l~~L~~L~Ls~n~~~~  146 (1055)
                      ..+++|+|+|+.+.-.    +..  .+.+.+.|+..++|+-- ++.   .+|+       .+-.+++|++||||+|.|..
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~--~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAK--VLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHH--HHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            4577888888876422    222  45566677777777532 121   1332       33445577777777776654


Q ss_pred             CCChh----cccCCCCcEEEecCCCCCCchhhccc------cHHHHhcCCCCCceeeCCCcccCCCC---CchhhcCCCC
Q 001554          147 HIPLE----ISSLKMLVSLDLSASGLVAPIQLRRA------NLEKLVKNLTNLEELYLGGIDISGAD---WGPILSILSN  213 (1055)
Q Consensus       147 ~~p~~----l~~L~~L~~L~Ls~n~~~~~~~~~~~------~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~  213 (1055)
                      ..+..    |.++..|++|.|.+|.+...-.....      ........-+.|+.+...+|++....   +...+...+.
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence            44432    34566666666666655321000000      01122344455666666666554322   3334445555


Q ss_pred             CcEEeCCCCcCCCC----CcccccCCCCCCEEECCCCCCCCCc----chhccCCCCCcEEEccCCcCCCccCcccCCCCC
Q 001554          214 LRILSLPDCHVAGP----IHSSLSKLQLLTHLNLDGNDLSSEV----PDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPS  285 (1055)
Q Consensus       214 L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  285 (1055)
                      |+.+.+..|.+...    +..++..+++|++|||..|.++...    ...+..+++|++|++++|.+...-..++..   
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~---  263 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD---  263 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH---
Confidence            66666665554422    1234455566666666666554321    223444555555555555554332222110   


Q ss_pred             CcEEEccCCCCCCCCCCCCC-CCCCCcEEEccCCcCCC----CCcccccCCCCCCEEEccCCcC
Q 001554          286 LCFLDVSSNSNLTGSLPEFP-PSSQLKVIELSETRFSG----KLPDSINNLALLEDLELSDCNF  344 (1055)
Q Consensus       286 L~~L~Ls~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l  344 (1055)
                                       .+. ..+.|+.|.+.+|.++.    .+...+...+.|+.|+|++|.+
T Consensus       264 -----------------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 -----------------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             -----------------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                             011 13455555555666642    2233455678888888888888

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.1e-10  Score=124.25  Aligned_cols=218  Identities=22%  Similarity=0.188  Sum_probs=125.2

Q ss_pred             CCCCCCCEEeCCCCCCCCCCC--hhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCch
Q 001554          129 DRLFSLTHLNLSYSGFSGHIP--LEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGP  206 (1055)
Q Consensus       129 ~~l~~L~~L~Ls~n~~~~~~p--~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  206 (1055)
                      .++++||...|.++... ..+  .....|++++.||||.|-+.+     -..+......+++|+.|+++.|++.......
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~n-----w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHN-----WFPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHh-----HHHHHHHHHhcccchhcccccccccCCcccc
Confidence            45778888888888765 333  355678888888888875432     1234455677888888888888776443222


Q ss_pred             hhcCCCCCcEEeCCCCcCCCC-CcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCcc-CcccCCCC
Q 001554          207 ILSILSNLRILSLPDCHVAGP-IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV-PEKIFLMP  284 (1055)
Q Consensus       207 ~l~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~  284 (1055)
                      .-..+++|+.|.|+.|.++.. +-..+..+|+|+.|+|.+|...........-+..|++|+|++|++-..- -...+.++
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence            334567777777777777642 2223445677777777777432222233334556666777666653221 12345566


Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCC-CcccccCCCCCCEEEe
Q 001554          285 SLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS-IPSSFGNLTELINIDF  363 (1055)
Q Consensus       285 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L  363 (1055)
                      .|+.|+++.+.+.+...++.                  ..-+-...+++|++|++..|++... --..+..+++|+.|.+
T Consensus       272 ~L~~Lnls~tgi~si~~~d~------------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDV------------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             chhhhhccccCcchhcCCCc------------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            66666666444333222211                  0001134567777777777777421 1123445566777777


Q ss_pred             ecCCCCC
Q 001554          364 SRNNFSG  370 (1055)
Q Consensus       364 s~n~l~~  370 (1055)
                      ..|.++.
T Consensus       334 ~~n~ln~  340 (505)
T KOG3207|consen  334 TLNYLNK  340 (505)
T ss_pred             ccccccc
Confidence            7777653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=7.8e-11  Score=125.31  Aligned_cols=209  Identities=27%  Similarity=0.290  Sum_probs=98.2

Q ss_pred             CCCCcEEEccCCcCCCCCc-ccccCCCCCCEEEccCCcCCCCCc--ccccCCCCCCEEEeecCCCCCCCCcccccCcccE
Q 001554          307 SSQLKVIELSETRFSGKLP-DSINNLALLEDLELSDCNFFGSIP--SSFGNLTELINIDFSRNNFSGSLPSFASSNKVIS  383 (1055)
Q Consensus       307 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~  383 (1055)
                      +.+|+++.|.++......- .....|++++.|||+.|-+....+  .-...+++|+.|+++.|++........       
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-------  192 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-------  192 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-------
Confidence            4555556665555442111 234455556666666555442211  223345555555555555542111110       


Q ss_pred             EEcccccCccccCcccccCCCCccEEEccCcccccc-cccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccC
Q 001554          384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGI-IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQ  462 (1055)
Q Consensus       384 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~  462 (1055)
                                      -..++.|+.|.++.|.++-. +-..+..+|+|+.|++..|... .+.......+..|++|||++
T Consensus       193 ----------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~  255 (505)
T KOG3207|consen  193 ----------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSN  255 (505)
T ss_pred             ----------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccC
Confidence                            12344555566666655422 1222334455555555555311 11111112333444444444


Q ss_pred             ccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCC-----CCcCCccceeecccC
Q 001554          463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN-----SNMFPKIGTLKLSSC  537 (1055)
Q Consensus       463 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~~~L~~L~L~~n  537 (1055)
                      |++                        ...-.......++.|+.|+++.+.+........     ...+|+|++|++..|
T Consensus       256 N~l------------------------i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  256 NNL------------------------IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             Ccc------------------------cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            444                        332222223334444444444444332221111     345778888888888


Q ss_pred             cCcccc--hhhhCCCCCCEEECcCCCCC
Q 001554          538 KITEFP--NFLRNQTNLFHLDLSNNRIK  563 (1055)
Q Consensus       538 ~l~~ip--~~l~~l~~L~~L~Ls~N~l~  563 (1055)
                      ++.+++  ..+..+++|+.|.+..|.++
T Consensus       312 ~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  312 NIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccccccchhhccchhhhhhccccccc
Confidence            877665  34666777777777777765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=9.3e-10  Score=107.87  Aligned_cols=111  Identities=32%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             CccCCCCCCeeeCCCCCCCCCCCCccCC-CCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHH
Q 001554          102 SLFDLQRLQHLNLADNSLYSSPFPSGFD-RLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLE  180 (1055)
Q Consensus       102 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~  180 (1055)
                      .+.+..++++|+|++|.+...   +.++ .+.+|++|+|++|.++ .++ .+..+++|++|++++|.+..        +.
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~--------i~   80 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS--------IS   80 (175)
T ss_dssp             -------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---------C
T ss_pred             ccccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc--------cc
Confidence            455566788888888887653   3555 5778888888888886 443 47778888888888887643        11


Q ss_pred             HHh-cCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCC
Q 001554          181 KLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVA  225 (1055)
Q Consensus       181 ~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~  225 (1055)
                      ..+ ..+++|++|++++|++........++.+++|++|+|.+|.+.
T Consensus        81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            112 356777777777777766554445555555555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=7.9e-10  Score=108.38  Aligned_cols=124  Identities=28%  Similarity=0.377  Sum_probs=37.2

Q ss_pred             CCCCCEEeccCCCCCCCCCcccc-CCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccc-cCCCCCcE
Q 001554          670 AFDLQVLDLSDNHLTGSIPSCLV-SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL-SKCTSLEV  747 (1055)
Q Consensus       670 l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~  747 (1055)
                      ...+++|+|++|.++. +. .++ .+.+|+.|+|++|.|+..  +.+..++.|++|++++|+|+. +++.+ ..+++|++
T Consensus        18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence            3456777777777762 32 343 456677777777777643  245666777777777777773 33333 35677777


Q ss_pred             EECCCCcCccccC-ccccCCCCCcEEEccCCcCccccCCC--cccccCCCCcEEe
Q 001554          748 LDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNYDGSIKDT--QTANAFALLQIID  799 (1055)
Q Consensus       748 L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~Ld  799 (1055)
                      |++++|+|...-. ..+..+++|++|+|.+|++... +..  ..+..+|+|+.||
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            7777777654211 3345566666666666666432 110  1234455555555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=1e-09  Score=110.68  Aligned_cols=207  Identities=22%  Similarity=0.250  Sum_probs=95.2

Q ss_pred             CCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCcccccCcccEEEccccc-CccccCccccc
Q 001554          323 KLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS-FTGTIPLSYGD  401 (1055)
Q Consensus       323 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~  401 (1055)
                      .+|-.+.-+++|..+.++.|.-.. +...-..-|.|+++.+.+.-++ ..|.......+.......-. ..|..-.. ..
T Consensus       205 ~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~-~d  281 (490)
T KOG1259|consen  205 RLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVS-AD  281 (490)
T ss_pred             ccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEe-cc
Confidence            344445566777777777765331 1111122356667766554433 22222211111111111100 11111111 12


Q ss_pred             CCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCcCeeeccCccccCCCCccccCCCCCCE
Q 001554          402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNV  481 (1055)
Q Consensus       402 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  481 (1055)
                      ....|+++|+++|.++ .+..+..-.|.++.|++++|.+.. +...  ..+++|+.||+++|.++.. ..+-..+-+++.
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nL--a~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNL--AELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhh--hhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence            3445667777777666 445555556666666666666652 2221  4455666666666655522 222334455556


Q ss_pred             EEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccCcCc
Q 001554          482 LRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT  540 (1055)
Q Consensus       482 L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  540 (1055)
                      |.|+.|.+..   ...+..+.+|..||+++|+|.........+.+|.|+++.+.+|.+.
T Consensus       357 L~La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  357 LKLAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eehhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            6666665542   2334445555555555555543322222333344444444444333

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.88  E-value=1.8e-09  Score=79.19  Aligned_cols=40  Identities=48%  Similarity=0.984  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCccccCCCCCC--CCCcccceeEec
Q 001554           34 EDQKLLLLEFKRGLSFDPQTDSTNKLLSWSST--TDCCSWDGVTCD   77 (1055)
Q Consensus        34 ~~~~~aLl~~k~~~~~~~~~~~~~~l~~W~~~--~~~c~w~gv~C~   77 (1055)
                      ++|++||++||+++..++.    ..+.+|+..  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~----~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS----GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC----cccccCCCcCCCCCeeeccEEeC
Confidence            6899999999999986553    389999876  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=1.1e-09  Score=110.49  Aligned_cols=131  Identities=26%  Similarity=0.305  Sum_probs=71.2

Q ss_pred             CCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECC
Q 001554          672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  751 (1055)
                      .|+++|||+|.++ .+..+..-.+.++.|++++|.+...  ..++.+++|+.|||++|.++ .+..+-..+-+.+.|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            3555666666555 4444454555566666666665532  22555566666666666665 333333445556666666


Q ss_pred             CCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCC
Q 001554          752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNL  809 (1055)
Q Consensus       752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~  809 (1055)
                      .|.|...  ..++++-+|..||+++|+|.. +.....++.+|-|+++.|.+|++.+..
T Consensus       361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  361 QNKIETL--SGLRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhHhhh--hhhHhhhhheeccccccchhh-HHHhcccccccHHHHHhhcCCCccccc
Confidence            6655421  224455555666666666542 222334566666666667777666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=1.3e-08  Score=125.03  Aligned_cols=200  Identities=24%  Similarity=0.209  Sum_probs=104.6

Q ss_pred             cEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCC--CCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCc
Q 001554           82 HVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNS--LYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV  159 (1055)
Q Consensus        82 ~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~  159 (1055)
                      .|+.+.+.++.+.-. +   .-...+.|++|=+..|.  +... -+++|..++.|++|||++|.-.+.+|.+|++|.+||
T Consensus       524 ~~rr~s~~~~~~~~~-~---~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr  598 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI-A---GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR  598 (889)
T ss_pred             heeEEEEeccchhhc-c---CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence            455555555544311 1   11233357777666664  3221 224466777777777777655567777777777777


Q ss_pred             EEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCC--CCCcccccCCCC
Q 001554          160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVA--GPIHSSLSKLQL  237 (1055)
Q Consensus       160 ~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~--~~~~~~l~~l~~  237 (1055)
                      +|+++.+.+        ..+|..+++++.|.+|++..+...... +.....+++|++|.+..-...  ...-..+.++.+
T Consensus       599 yL~L~~t~I--------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  599 YLDLSDTGI--------SHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             cccccCCCc--------cccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            777777543        345666777777777777665433222 444555777777777655422  112233445555


Q ss_pred             CCEEECCCCCCCCCcchhccCCCCCc----EEEccCCcCCCccCcccCCCCCCcEEEccCCCCCC
Q 001554          238 LTHLNLDGNDLSSEVPDFLTNFSSLQ----YLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLT  298 (1055)
Q Consensus       238 L~~L~Ls~n~~~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~  298 (1055)
                      |+.+.......  .+-..+..+..|+    .+.+.++.. ...+..+..+.+|+.|.+.++....
T Consensus       670 L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  670 LENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence            55555433222  1111122222222    222222222 2334455667777777777665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=2.8e-09  Score=122.79  Aligned_cols=241  Identities=25%  Similarity=0.250  Sum_probs=135.6

Q ss_pred             eEEEccCCcCcCCccccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCC
Q 001554          650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN  729 (1055)
Q Consensus       650 ~~l~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  729 (1055)
                      +.+.+..|.+.. +-..++.+.+|+.|++.+|++.+ +...+..+.+|++|++++|.|+...  .+..++.|+.|++++|
T Consensus        75 ~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   75 KELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGN  150 (414)
T ss_pred             Hhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccC
Confidence            344444444443 22234556667777777777663 3332555666667777777666542  2445555666666666


Q ss_pred             cccccCcccccCCCCCcEEECCCCcCccccC-ccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccC
Q 001554          730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGN  808 (1055)
Q Consensus       730 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~  808 (1055)
                      .|+. + ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+...-    ....+..+..+++..|.++..
T Consensus       151 ~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  151 LISD-I-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             cchh-c-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccceec
Confidence            6662 2 223445666666666666664433 2 355566666666666553211    112222233334444444311


Q ss_pred             CChHHHhhhhhhccccccchhhhhhhhhhhhccccccccceEEeecCchhHHHhhcc--cccEEEccCCcccccCccccc
Q 001554          809 LPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILT--IFTSIDVSNNQFEGEIPEMLG  886 (1055)
Q Consensus       809 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~LdLs~N~l~g~ip~~~~  886 (1055)
                      -+.                                             .     .+.  +++.+++++|++. .+++.+.
T Consensus       224 ~~l---------------------------------------------~-----~~~~~~L~~l~l~~n~i~-~~~~~~~  252 (414)
T KOG0531|consen  224 EGL---------------------------------------------N-----ELVMLHLRELYLSGNRIS-RSPEGLE  252 (414)
T ss_pred             cCc---------------------------------------------c-----cchhHHHHHHhcccCccc-ccccccc
Confidence            110                                             0     011  2567788888887 4546677


Q ss_pred             CCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCccc--Cccc--ccCCCCCCeEecCCCcCcccCC
Q 001554          887 DFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK--IPEK--LATLNFLSVLKLSQNLLVGEIP  954 (1055)
Q Consensus       887 ~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~--ip~~--l~~l~~L~~l~ls~N~L~g~iP  954 (1055)
                      .+..+..|+++.|++...-  .+.....+..+.++.|.+...  +...  .+....+....+.+|......+
T Consensus       253 ~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  253 NLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            7788888888888887432  245566777778888877632  2222  5667778888888887776665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=1.2e-08  Score=82.01  Aligned_cols=59  Identities=37%  Similarity=0.512  Sum_probs=30.2

Q ss_pred             CCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCc
Q 001554          890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNL  948 (1055)
Q Consensus       890 ~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~  948 (1055)
                      +|+.|++++|+|+..-+..|.++++|++||+++|+++...|..|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555553333445555555555555555554444455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.67  E-value=1.6e-08  Score=81.42  Aligned_cols=61  Identities=36%  Similarity=0.537  Sum_probs=56.4

Q ss_pred             ccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcC
Q 001554          865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL  925 (1055)
Q Consensus       865 ~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~l  925 (1055)
                      +.|+.|++++|+++...+..|..+++|+.|++++|++++..|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3578999999999977678899999999999999999988888999999999999999986

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.64  E-value=1.1e-08  Score=125.47  Aligned_cols=252  Identities=24%  Similarity=0.273  Sum_probs=144.7

Q ss_pred             CcEEEEEcCCCcc-ccccCCCCCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCc
Q 001554           81 GHVIGLDISSSFI-TGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV  159 (1055)
Q Consensus        81 ~~v~~L~L~~~~l-~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~  159 (1055)
                      ..++.|-+.++.- -..++. ..+..++.|++|||++|.--+. +|++|+.|-+||||+|+++.+. .+|..+++|+.|.
T Consensus       545 ~~L~tLll~~n~~~l~~is~-~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISG-EFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CccceEEEeecchhhhhcCH-HHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            3577777777641 112322 1366799999999999765555 9999999999999999999998 9999999999999


Q ss_pred             EEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccC-CCCCchhhcCCCCCcEEeCCCCcCCCCCcccccCCCCC
Q 001554          160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDIS-GADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLL  238 (1055)
Q Consensus       160 ~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L  238 (1055)
                      +|++..+...       ...+.....+.+||+|.+...... +......+..+.+|+.+.......  .+-..+..++.|
T Consensus       622 ~Lnl~~~~~l-------~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L  692 (889)
T KOG4658|consen  622 YLNLEVTGRL-------ESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRL  692 (889)
T ss_pred             eecccccccc-------ccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHH
Confidence            9999986421       122445677999999998766422 222234455666666666644433  111122223322


Q ss_pred             C----EEECCCCCCCCCcchhccCCCCCcEEEccCCcCCCccCcccCC------CCCCcEEEccCCCCCCCCCCCCCCCC
Q 001554          239 T----HLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL------MPSLCFLDVSSNSNLTGSLPEFPPSS  308 (1055)
Q Consensus       239 ~----~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~~~~~~~~~~~l~  308 (1055)
                      .    .+.+.++... ..+..+..+.+|+.|.+.+|.+..........      ++++..+.+..+.... ........+
T Consensus       693 ~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~  770 (889)
T KOG4658|consen  693 RSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAP  770 (889)
T ss_pred             HHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccC
Confidence            2    2222222222 33445666777777777777764322211111      1122222222221111 011112356


Q ss_pred             CCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCC
Q 001554          309 QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG  346 (1055)
Q Consensus       309 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  346 (1055)
                      +|+.|.+..+.....+.+....+..++.+.+..+.+.+
T Consensus       771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~  808 (889)
T KOG4658|consen  771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG  808 (889)
T ss_pred             cccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence            66666666665554444444444455544555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=9.7e-10  Score=111.09  Aligned_cols=180  Identities=26%  Similarity=0.292  Sum_probs=113.8

Q ss_pred             CCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCC
Q 001554          108 RLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLT  187 (1055)
Q Consensus       108 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~  187 (1055)
                      .|++||||...++...+-.-+..+.+|+.|.|.++.+.+.+-..|.+=.+|+.|+++.+.     .++.....-.+.+|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-----G~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-----GFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc-----ccchhHHHHHHHhhh
Confidence            478888888777654344456677888888888888877777778888888888888753     223344555677888


Q ss_pred             CCceeeCCCcccCCCCCchhhc-CCCCCcEEeCCCCcCCC---CCcccccCCCCCCEEECCCCC-CCCCcchhccCCCCC
Q 001554          188 NLEELYLGGIDISGADWGPILS-ILSNLRILSLPDCHVAG---PIHSSLSKLQLLTHLNLDGND-LSSEVPDFLTNFSSL  262 (1055)
Q Consensus       188 ~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~~l~~L  262 (1055)
                      .|.+|+++|+.++.......+. --++|+.|+|+++.-.-   .+..-...+++|.+|||+.|. ++......|.+++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            8888888888776544333332 23567777777764221   122223467777777777654 333333456667777


Q ss_pred             cEEEccCCcCCCccCcc---cCCCCCCcEEEccCC
Q 001554          263 QYLHLSLCGLYGRVPEK---IFLMPSLCFLDVSSN  294 (1055)
Q Consensus       263 ~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n  294 (1055)
                      ++|.++.|..  .+|..   +...|.|.+||+.++
T Consensus       341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            7777777753  44443   344566666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=4.7e-09  Score=120.97  Aligned_cols=151  Identities=30%  Similarity=0.296  Sum_probs=93.8

Q ss_pred             CCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCcEEEecCCCCCCchhhccccHHHHhc
Q 001554          105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVK  184 (1055)
Q Consensus       105 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~  184 (1055)
                      .+..++.+++..|.+..  +-..++.+++|.+|++.+|.+. .+...+..+++|++|++++|.|+..-         .+.
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~---------~l~  137 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE---------GLS  137 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc---------chh
Confidence            45666677777777655  2344677788888888888776 44433677788888888887764421         244


Q ss_pred             CCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCc-ccccCCCCCCEEECCCCCCCCCcchhccCCCCCc
Q 001554          185 NLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIH-SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQ  263 (1055)
Q Consensus       185 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  263 (1055)
                      .++.|+.|++++|.++...   .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...  ..+..+..+.
T Consensus       138 ~l~~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~  211 (414)
T KOG0531|consen  138 TLTLLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLV  211 (414)
T ss_pred             hccchhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHH
Confidence            5556777777777776543   33446677777777776665333 2 45666777777777766532  2233334444


Q ss_pred             EEEccCCcCC
Q 001554          264 YLHLSLCGLY  273 (1055)
Q Consensus       264 ~L~L~~n~l~  273 (1055)
                      .+++..|.++
T Consensus       212 ~~~l~~n~i~  221 (414)
T KOG0531|consen  212 LLSLLDNKIS  221 (414)
T ss_pred             Hhhcccccce
Confidence            4466666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=2.7e-09  Score=107.90  Aligned_cols=212  Identities=22%  Similarity=0.191  Sum_probs=117.8

Q ss_pred             ccceeEecCCCCcEEEEEcCCCccccccCCCCCccCCC--CCCeeeCCCCCCCCCCCCccCCCC-CCCCEEeCCCCCCCC
Q 001554           70 SWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQ--RLQHLNLADNSLYSSPFPSGFDRL-FSLTHLNLSYSGFSG  146 (1055)
Q Consensus        70 ~w~gv~C~~~~~~v~~L~L~~~~l~g~~~~~~~l~~l~--~L~~L~Ls~n~~~~~~lp~~l~~l-~~L~~L~Ls~n~~~~  146 (1055)
                      +|.|+.-+.  .--+.+|+.+..+...     .++.+.  ...++.+.........+.+.+.-+ +.|++||||+..++.
T Consensus       127 Rfyr~~~de--~lW~~lDl~~r~i~p~-----~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~  199 (419)
T KOG2120|consen  127 RFYRLASDE--SLWQTLDLTGRNIHPD-----VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITV  199 (419)
T ss_pred             HHhhccccc--cceeeeccCCCccChh-----HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeH
Confidence            566655543  3467888888776521     333332  344444443322222122222222 358888888877652


Q ss_pred             C-CChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCc-ccCCCCCchhhcCCCCCcEEeCCCCcC
Q 001554          147 H-IPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGI-DISGADWGPILSILSNLRILSLPDCHV  224 (1055)
Q Consensus       147 ~-~p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~L~~~~l  224 (1055)
                      . +-.-+..|.+|+.|.+.++.+.+       .+...+++-.+|+.|+++.+ .++.....-.+..++.|..|+|++|.+
T Consensus       200 stl~~iLs~C~kLk~lSlEg~~LdD-------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  200 STLHGILSQCSKLKNLSLEGLRLDD-------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             HHHHHHHHHHHhhhhccccccccCc-------HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence            2 22335677788888777766533       34556777778888887765 344444444567777888888888876


Q ss_pred             CCCCcccc-cC-CCCCCEEECCCCCC---CCCcchhccCCCCCcEEEccCCc-CCCccCcccCCCCCCcEEEccCCC
Q 001554          225 AGPIHSSL-SK-LQLLTHLNLDGNDL---SSEVPDFLTNFSSLQYLHLSLCG-LYGRVPEKIFLMPSLCFLDVSSNS  295 (1055)
Q Consensus       225 ~~~~~~~l-~~-l~~L~~L~Ls~n~~---~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~  295 (1055)
                      ..+....+ .. -++|+.|+|+++.-   ...+..-...+++|.+|||++|. ++......+.+++.|++|.++.|.
T Consensus       273 ~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  273 FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            65432221 11 24666677766531   11222233456667777776663 233333445566666666666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=3.9e-08  Score=88.30  Aligned_cols=88  Identities=31%  Similarity=0.452  Sum_probs=60.6

Q ss_pred             ccccEEEccCCcccccCcccccC-CCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEe
Q 001554          865 TIFTSIDVSNNQFEGEIPEMLGD-FDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLK  943 (1055)
Q Consensus       865 ~~l~~LdLs~N~l~g~ip~~~~~-l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~  943 (1055)
                      ..++.++||+|.|. ..|+.|.. .+.++.|||++|.|+ .+|.+++.++.|+.|+++.|.|.- .|..+..|.+|..||
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLD  129 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhc
Confidence            34566777777777 45555444 346777788888887 677778888888888888887773 456666677777777


Q ss_pred             cCCCcCcccCCCC
Q 001554          944 LSQNLLVGEIPRG  956 (1055)
Q Consensus       944 ls~N~L~g~iP~~  956 (1055)
                      .-.|.+. +||..
T Consensus       130 s~~na~~-eid~d  141 (177)
T KOG4579|consen  130 SPENARA-EIDVD  141 (177)
T ss_pred             CCCCccc-cCcHH
Confidence            7777653 56644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=1.7e-07  Score=93.91  Aligned_cols=214  Identities=21%  Similarity=0.245  Sum_probs=130.3

Q ss_pred             CcEEEEEcCCCccccccCC--CCCccCCCCCCeeeCCCCCCCCC--CCC-------ccCCCCCCCCEEeCCCCCCCCCCC
Q 001554           81 GHVIGLDISSSFITGGING--SSSLFDLQRLQHLNLADNSLYSS--PFP-------SGFDRLFSLTHLNLSYSGFSGHIP  149 (1055)
Q Consensus        81 ~~v~~L~L~~~~l~g~~~~--~~~l~~l~~L~~L~Ls~n~~~~~--~lp-------~~l~~l~~L~~L~Ls~n~~~~~~p  149 (1055)
                      ..++.+|||||.+..+-..  ...|.+-++|++.++|.-.....  .++       ..+-+|++|+..+||+|.|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4688899999987543211  01456678888888886432211  122       356678889999999998877666


Q ss_pred             hh----cccCCCCcEEEecCCCCCCchhhccc------cHHHHhcCCCCCceeeCCCcccCCCC---CchhhcCCCCCcE
Q 001554          150 LE----ISSLKMLVSLDLSASGLVAPIQLRRA------NLEKLVKNLTNLEELYLGGIDISGAD---WGPILSILSNLRI  216 (1055)
Q Consensus       150 ~~----l~~L~~L~~L~Ls~n~~~~~~~~~~~------~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~  216 (1055)
                      ..    |++-+.|++|.+++|.+...-.....      ...+..++.+.|+......|++....   |...+..-.+|++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            54    45667888888888876432111111      11233456778888888888766332   2333333467888


Q ss_pred             EeCCCCcCCCC-----CcccccCCCCCCEEECCCCCCCCCc----chhccCCCCCcEEEccCCcCCCccCcccC------
Q 001554          217 LSLPDCHVAGP-----IHSSLSKLQLLTHLNLDGNDLSSEV----PDFLTNFSSLQYLHLSLCGLYGRVPEKIF------  281 (1055)
Q Consensus       217 L~L~~~~l~~~-----~~~~l~~l~~L~~L~Ls~n~~~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------  281 (1055)
                      +.+..|.+...     +...+..+.+|+.|||..|.++-..    ...+...+.|++|.+.+|-++..-..++.      
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~  269 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK  269 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence            88888776543     1123456678888888888776432    23445566778888888776544332221      


Q ss_pred             CCCCCcEEEccCC
Q 001554          282 LMPSLCFLDVSSN  294 (1055)
Q Consensus       282 ~l~~L~~L~Ls~n  294 (1055)
                      ..++|..|...+|
T Consensus       270 ~~p~l~~L~~~Yn  282 (388)
T COG5238         270 FVPNLMPLPGDYN  282 (388)
T ss_pred             cCCCccccccchh
Confidence            1355555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.10  E-value=1.3e-07  Score=106.81  Aligned_cols=197  Identities=24%  Similarity=0.280  Sum_probs=121.9

Q ss_pred             CCCcEEEccCCcCCCCC-cccccCCCCCCEEEccCCcCCCCCcccccCC-CCCCEEEeecCCC----------CCCCCcc
Q 001554          308 SQLKVIELSETRFSGKL-PDSINNLALLEDLELSDCNFFGSIPSSFGNL-TELINIDFSRNNF----------SGSLPSF  375 (1055)
Q Consensus       308 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l----------~~~~~~~  375 (1055)
                      ++++.|.+-.-.-.+.. |-.+..+.+|++|.+.+|.+...  ..+..+ ..|++|-- .|.+          .|.+...
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence            44444444333222222 55677888999999999987631  111111 12333321 1211          1222222


Q ss_pred             cccCcccEEEcccccCccccCcccccCCCCccEEEccCcccccccccccccCCCccEEEccCccccCCcchhhcccccCc
Q 001554          376 ASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSL  455 (1055)
Q Consensus       376 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L  455 (1055)
                      ..-..|.+.++++|.+.- +.. .+.-++.|+.|+|++|+++..  +.+..++.|+.|||++|.+. .+|.+....+ .|
T Consensus       161 ~~Wn~L~~a~fsyN~L~~-mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L  234 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVL-MDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL  234 (1096)
T ss_pred             hhhhhHhhhhcchhhHHh-HHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hh
Confidence            222367777777777652 222 234567788888888888754  37778888888888888877 4555543333 38


Q ss_pred             CeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcce
Q 001554          456 REMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFS  515 (1055)
Q Consensus       456 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~  515 (1055)
                      +.|.+++|.++..  ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+.
T Consensus       235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888888887754  456778888888888887777666666677777777777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.00  E-value=1.4e-07  Score=106.51  Aligned_cols=128  Identities=27%  Similarity=0.297  Sum_probs=89.9

Q ss_pred             CCCCcEEEccCCcCCCCCcccccCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEeecCCCCCCCCccc-ccCcccEEE
Q 001554          307 SSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFA-SSNKVISLK  385 (1055)
Q Consensus       307 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~  385 (1055)
                      .-.|...+.++|.+. .+..++.-++.|+.|+|++|+++...  .+..+++|++|||++|.+. .+|.+- ..+.|..|.
T Consensus       163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence            345666777788876 45567788899999999999997543  7888999999999999987 344432 233688888


Q ss_pred             cccccCccccCcccccCCCCccEEEccCccccccc-ccccccCCCccEEEccCcccc
Q 001554          386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGII-PKSLYTKQSIESLLLGQNKFH  441 (1055)
Q Consensus       386 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  441 (1055)
                      +++|.++.-..   +.++.+|+.||+++|-+.+-- -..+..+..|+.|+|.+|.+.
T Consensus       239 lrnN~l~tL~g---ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTTLRG---IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHhhhh---HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            88887663221   356777888888888776431 123445666777777777764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=9.9e-07  Score=88.56  Aligned_cols=40  Identities=20%  Similarity=0.131  Sum_probs=18.6

Q ss_pred             CCCCCCEEEccCCcCCCCC----cccccCCCCCCEEEeecCCCC
Q 001554          330 NLALLEDLELSDCNFFGSI----PSSFGNLTELINIDFSRNNFS  369 (1055)
Q Consensus       330 ~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~  369 (1055)
                      .+.+|+.|||.+|-++..-    ..++...+.|+.|.+..|-++
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            3455555555555554211    122333344555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=2e-06  Score=87.54  Aligned_cols=117  Identities=30%  Similarity=0.283  Sum_probs=57.1

Q ss_pred             ChhcccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCC-CchhhcCCCCCcEEeCCCCcCCCC
Q 001554          149 PLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD-WGPILSILSNLRILSLPDCHVAGP  227 (1055)
Q Consensus       149 p~~l~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~l~~l~~L~~L~L~~~~l~~~  227 (1055)
                      +-.+..+..++.|-+.++.|.+     .......-..++.+++|||.+|.|++-. ....+.++|+|++|+|+.|.+...
T Consensus        38 ~~~v~s~ra~ellvln~~~id~-----~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~  112 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDN-----EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD  112 (418)
T ss_pred             eeeeccccchhhheecCCCCCc-----chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence            3334444445555555544422     1122233345667777777777776422 133445667777777777666654


Q ss_pred             CcccccCCCCCCEEECCCCCCCCCc-chhccCCCCCcEEEccCC
Q 001554          228 IHSSLSKLQLLTHLNLDGNDLSSEV-PDFLTNFSSLQYLHLSLC  270 (1055)
Q Consensus       228 ~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n  270 (1055)
                      |...-..+.+|++|-|.+..+.-.- -..+..++.+++|+++.|
T Consensus       113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            3221134445555555554443211 122333444445544444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=2.3e-06  Score=87.20  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=33.6

Q ss_pred             cCcCeeeccCccccCCC-CccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCccee
Q 001554          453 LSLREMDFSQNKLQGLV-PESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSF  516 (1055)
Q Consensus       453 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~  516 (1055)
                      +++..+.+..|.+.... -+....++.+..|.|+.+++......+.+.++++|..|.++++.+.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            44555555555443221 12333445555666666666555455555666666666666665553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.2e-05  Score=58.99  Aligned_cols=36  Identities=42%  Similarity=0.653  Sum_probs=18.7

Q ss_pred             CCCEEECCCCccccccCccccCcCCCCeEeCCCCcCc
Q 001554          890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS  926 (1055)
Q Consensus       890 ~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~ls  926 (1055)
                      +|++|++++|+|+ .+|..|++|++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34545555555555555555555

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.78  E-value=1.7e-06  Score=92.47  Aligned_cols=183  Identities=20%  Similarity=0.167  Sum_probs=103.2

Q ss_pred             CCCCeeeCCCCCCCCC-CCCccCCCCCCCCEEeCCCCC-CCCCCChhcc-cCCCCcEEEecCCCCCCchhhccccHHHHh
Q 001554          107 QRLQHLNLADNSLYSS-PFPSGFDRLFSLTHLNLSYSG-FSGHIPLEIS-SLKMLVSLDLSASGLVAPIQLRRANLEKLV  183 (1055)
Q Consensus       107 ~~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~-~~~~~p~~l~-~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l  183 (1055)
                      ..|+.|.++++.-.+. ++-..-.+++++++|++.++. +++..-.+++ .|++|++|++-.+.     .++...+....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~-----~iT~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS-----SITDVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc-----hhHHHHHHHHH
Confidence            3677777877754332 233445678888888888874 3333333343 58888888887742     23334455567


Q ss_pred             cCCCCCceeeCCCcc-cCCCCCchhhcCCCCCcEEeCCCCcCCCCCcccc----cCCCCCCEEECCCCCC-CCCcchhc-
Q 001554          184 KNLTNLEELYLGGID-ISGADWGPILSILSNLRILSLPDCHVAGPIHSSL----SKLQLLTHLNLDGNDL-SSEVPDFL-  256 (1055)
Q Consensus       184 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l----~~l~~L~~L~Ls~n~~-~~~~p~~l-  256 (1055)
                      .++++|++|+++|+. +++........+++.++.+.+++|.-.+.  +.+    ..+..+..+++..+.. +...-..+ 
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~  290 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA  290 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence            788889999888873 55555455556777777777776632221  111    2334455555555432 22111111 


Q ss_pred             cCCCCCcEEEccCCcCCCc-cCccc-CCCCCCcEEEccCCCC
Q 001554          257 TNFSSLQYLHLSLCGLYGR-VPEKI-FLMPSLCFLDVSSNSN  296 (1055)
Q Consensus       257 ~~l~~L~~L~L~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~~  296 (1055)
                      ..+..|++|+.+++.-.+. .-.++ .++.+|+.|-++.++.
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~  332 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ  332 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence            2355677777766644221 11222 3466777777776653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.77  E-value=9.1e-07  Score=94.45  Aligned_cols=291  Identities=20%  Similarity=0.156  Sum_probs=173.3

Q ss_pred             ceeEecC---CCCcEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCC-CCCCCCccCCCCCCCCEEeCCCC-CCCC
Q 001554           72 DGVTCDP---RTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSL-YSSPFPSGFDRLFSLTHLNLSYS-GFSG  146 (1055)
Q Consensus        72 ~gv~C~~---~~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~-~~~~lp~~l~~l~~L~~L~Ls~n-~~~~  146 (1055)
                      .||.|..   -.|++++|.|.|..=.|.-+.-....++++++.|++.++.- +...+-+.-..+++|++|+|..| .++.
T Consensus       126 g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~  205 (483)
T KOG4341|consen  126 GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD  205 (483)
T ss_pred             CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence            4566642   23788888888865433222111345788999999988853 22211122347899999999995 4554


Q ss_pred             CCChhc-ccCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCC-CchhhcCCCCCcEEeCCCCcC
Q 001554          147 HIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGAD-WGPILSILSNLRILSLPDCHV  224 (1055)
Q Consensus       147 ~~p~~l-~~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~l~~l~~L~~L~L~~~~l  224 (1055)
                      .....+ ..+++|++|+++++.-     +...++.....+++.++.+.+.|+.=.+.. +...-+.+..+.++++..|..
T Consensus       206 ~~Lk~la~gC~kL~~lNlSwc~q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  206 VSLKYLAEGCRKLKYLNLSWCPQ-----ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             HHHHHHHHhhhhHHHhhhccCch-----hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence            444434 4699999999999742     233556677888888888887775322211 111124456677777777753


Q ss_pred             CCCCc--ccccCCCCCCEEECCCCCCCCCcc-hhc-cCCCCCcEEEccCCcC-CCccCccc-CCCCCCcEEEccCCCCCC
Q 001554          225 AGPIH--SSLSKLQLLTHLNLDGNDLSSEVP-DFL-TNFSSLQYLHLSLCGL-YGRVPEKI-FLMPSLCFLDVSSNSNLT  298 (1055)
Q Consensus       225 ~~~~~--~~l~~l~~L~~L~Ls~n~~~~~~p-~~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n~~~~  298 (1055)
                      .....  ..-..+..|+.|+.+++...+..+ ..+ .+..+|+.|-++.|+- +..-...+ .+++.|+.+++..+....
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh
Confidence            33211  112357888999998876533222 223 3578999999998863 32222223 247888888888776544


Q ss_pred             CC-CCCCC-CCCCCcEEEccCCcCCCCC-----cccccCCCCCCEEEccCCcCC-CCCcccccCCCCCCEEEeecCC
Q 001554          299 GS-LPEFP-PSSQLKVIELSETRFSGKL-----PDSINNLALLEDLELSDCNFF-GSIPSSFGNLTELINIDFSRNN  367 (1055)
Q Consensus       299 ~~-~~~~~-~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~  367 (1055)
                      .. +..+. .++.|+.+.++.+......     ...-..+..|+.+.|+++... ...-..+..+++|+.+++..++
T Consensus       361 d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  361 DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            33 22232 3677777777766443211     112234566777777777643 2223345566677777666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=8.4e-07  Score=79.93  Aligned_cols=134  Identities=22%  Similarity=0.266  Sum_probs=76.2

Q ss_pred             CCEEeccCCCCCCCCCccc---cCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEE
Q 001554          673 LQVLDLSDNHLTGSIPSCL---VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD  749 (1055)
Q Consensus       673 L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  749 (1055)
                      +..++|+.|.+- .++...   .....|+..+|++|.+....+..-...+..+.|+|++|.|+ .+|..+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            445555555553 333322   22234555666666666433333334456677777777777 5666677777777777


Q ss_pred             CCCCcCccccCccccCCCCCcEEEccCCcCccccCCCcccccCCCCcEEeccCCCCccCCChH
Q 001554          750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPAR  812 (1055)
Q Consensus       750 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~  812 (1055)
                      ++.|.+. ..|..+..+.++-.|+..+|.+. .++..  +-.-+..-..++.++++.+.++..
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d--l~~s~~~al~~lgnepl~~~~~~k  165 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD--LFYSSLPALIKLGNEPLGDETKKK  165 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH--HhccccHHHHHhcCCcccccCccc
Confidence            7777775 45555656677777777776653 22211  111222334566888888888743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=2.2e-05  Score=57.63  Aligned_cols=38  Identities=42%  Similarity=0.622  Sum_probs=32.9

Q ss_pred             CCCCeEeCCCCcCcccCcccccCCCCCCeEecCCCcCcc
Q 001554          913 KELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVG  951 (1055)
Q Consensus       913 ~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~L~g  951 (1055)
                      ++|++|++++|+|+ .+|..+++|++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 578889999999999999999873

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=1.1e-05  Score=96.86  Aligned_cols=107  Identities=20%  Similarity=0.338  Sum_probs=72.9

Q ss_pred             CCCceeeCCCcccCCCCCchhhc-CCCCCcEEeCCCCcCCCC-CcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcE
Q 001554          187 TNLEELYLGGIDISGADWGPILS-ILSNLRILSLPDCHVAGP-IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY  264 (1055)
Q Consensus       187 ~~L~~L~L~~n~l~~~~~~~~l~-~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  264 (1055)
                      .+|++|+++|...-...|+..++ .+|+|++|.+.+-.+... .-....++++|..||+|+.+++..  ..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56777777776666666776664 468888888877665442 223345778888888888877754  56777888888


Q ss_pred             EEccCCcCCC-ccCcccCCCCCCcEEEccCCC
Q 001554          265 LHLSLCGLYG-RVPEKIFLMPSLCFLDVSSNS  295 (1055)
Q Consensus       265 L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~  295 (1055)
                      |.+.+-.+.. ..-..++++++|++||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            8877766643 223456778888888888553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.54  E-value=0.00034  Score=77.41  Aligned_cols=76  Identities=17%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             ccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCC-cCccccCccccCCCCC
Q 001554          691 LVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKN-QLNGSFPFWLETLPQL  769 (1055)
Q Consensus       691 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L  769 (1055)
                      +..+..++.|++++|.++. +|. +  -.+|++|+++++.--..+|+.+.  .+|+.|++++| .+. .+|.      .|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------cc
Confidence            3445778888888887764 452 2  23688888887443346666553  57888888877 443 3442      35


Q ss_pred             cEEEccCCcC
Q 001554          770 RVLVLQSNNY  779 (1055)
Q Consensus       770 ~~L~L~~N~l  779 (1055)
                      +.|+++.|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            5566655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=4.1e-05  Score=92.08  Aligned_cols=150  Identities=24%  Similarity=0.310  Sum_probs=103.1

Q ss_pred             CCCCCEEeCCCCCC-CCCCChhcc-cCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhh
Q 001554          131 LFSLTHLNLSYSGF-SGHIPLEIS-SLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPIL  208 (1055)
Q Consensus       131 l~~L~~L~Ls~n~~-~~~~p~~l~-~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l  208 (1055)
                      -.+|++||+++... ...=|..++ .|+.|+.|.+++-.+      ....+.+...++++|..||+++.+++..   ..+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~------~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GI  191 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF------DNDDFSQLCASFPNLRSLDISGTNISNL---SGI  191 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee------cchhHHHHhhccCccceeecCCCCccCc---HHH
Confidence            36788888888543 333344555 478899998887433      2344667788889999999999888765   578


Q ss_pred             cCCCCCcEEeCCCCcCCC-CCcccccCCCCCCEEECCCCCCCCCc--c----hhccCCCCCcEEEccCCcCCCccCcccC
Q 001554          209 SILSNLRILSLPDCHVAG-PIHSSLSKLQLLTHLNLDGNDLSSEV--P----DFLTNFSSLQYLHLSLCGLYGRVPEKIF  281 (1055)
Q Consensus       209 ~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p~~l~  281 (1055)
                      +++++|++|.+.+=.+.. ..-..+.+|++|++||+|........  .    +.-..+++|+.||.++..+.+.+-+.+-
T Consensus       192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            889999999888777664 23345788999999999976644321  1    1123488999999998888766544432


Q ss_pred             -CCCCCcEE
Q 001554          282 -LMPSLCFL  289 (1055)
Q Consensus       282 -~l~~L~~L  289 (1055)
                       .-++|+.+
T Consensus       272 ~sH~~L~~i  280 (699)
T KOG3665|consen  272 NSHPNLQQI  280 (699)
T ss_pred             HhCccHhhh
Confidence             23444433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.46  E-value=0.00044  Score=76.56  Aligned_cols=56  Identities=14%  Similarity=0.314  Sum_probs=28.7

Q ss_pred             hhcCCCCCeEECCCCcceeecCCCCCCcCCccceeecccC-cCcccchhhhCCCCCCEEECcCC
Q 001554          498 FKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC-KITEFPNFLRNQTNLFHLDLSNN  560 (1055)
Q Consensus       498 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~ip~~l~~l~~L~~L~Ls~N  560 (1055)
                      +..+.+++.|++++|.++...     ...++|++|.+++| .++.+|..+  .++|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            344566666666666555332     12234666666554 444555433  134555555555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.37  E-value=0.00026  Score=68.83  Aligned_cols=105  Identities=23%  Similarity=0.270  Sum_probs=56.8

Q ss_pred             CcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCCCCCCcCCccceee
Q 001554          454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK  533 (1055)
Q Consensus       454 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  533 (1055)
                      +...+|+++|.+...  ..|.+++.|.+|.+.+|+|+. |....-.-+++|+.|.+.+|.+....+......+|+|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCccee-eccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            344555555555432  234555566666666666653 33344444555666666666555444444444556666666


Q ss_pred             cccCcCcccch----hhhCCCCCCEEECcCCC
Q 001554          534 LSSCKITEFPN----FLRNQTNLFHLDLSNNR  561 (1055)
Q Consensus       534 L~~n~l~~ip~----~l~~l~~L~~L~Ls~N~  561 (1055)
                      +-+|.++.-..    .+..+++|+.||.+.-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            66665554432    24566777777766543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.10  E-value=0.00068  Score=66.02  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             cccCcCeeeccCccccCCCCccccCCCCCCEEEccCCCCCCccchhhhhcCCCCCeEECCCCcceeecCC--CCCCcCCc
Q 001554          451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG--SNSNMFPK  528 (1055)
Q Consensus       451 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~~~  528 (1055)
                      .++.|.+|.+.+|+|+..-|.--..+++|+.|.|.+|++......+.+..|++|++|.+-+|.++....-  .....+|+
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~  141 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS  141 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence            3344555555555555444433334555666666666665444445566667777777777666532221  12345788


Q ss_pred             cceeecccCcCc
Q 001554          529 IGTLKLSSCKIT  540 (1055)
Q Consensus       529 L~~L~L~~n~l~  540 (1055)
                      |+.||++.-...
T Consensus       142 l~~LDF~kVt~~  153 (233)
T KOG1644|consen  142 LRTLDFQKVTRK  153 (233)
T ss_pred             ceEeehhhhhHH
Confidence            888887765443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.70  E-value=0.0042  Score=58.62  Aligned_cols=83  Identities=18%  Similarity=0.336  Sum_probs=29.1

Q ss_pred             ccccCCCCCCEEeccCCCCCCCCCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCC
Q 001554          665 LSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTS  744 (1055)
Q Consensus       665 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  744 (1055)
                      ..|..+++|+.+++.++ +...-..+|.++.+++.+.+.+ .+.......|..+++|+.+++..+ +...-...|.++ .
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence            33444444555554443 3323333444444444444433 222223334444444444444433 332223334443 4


Q ss_pred             CcEEECC
Q 001554          745 LEVLDVG  751 (1055)
Q Consensus       745 L~~L~Ls  751 (1055)
                      |+.+.+.
T Consensus       105 l~~i~~~  111 (129)
T PF13306_consen  105 LKEINIP  111 (129)
T ss_dssp             --EEE-T
T ss_pred             ceEEEEC
Confidence            4444444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.53  E-value=0.0016  Score=66.50  Aligned_cols=60  Identities=25%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             CCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCC--CCCCCCChhcccCCCCcEEEecCCCC
Q 001554          106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYS--GFSGHIPLEISSLKMLVSLDLSASGL  168 (1055)
Q Consensus       106 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~L~~L~~L~Ls~n~~  168 (1055)
                      +..|+.|++.+..++..   ..+-.|++|++|.+|.|  .+.+.++.....+++|++|+++.|++
T Consensus        42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            33444444444443322   23445556666666666  44444444444455555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.00017  Score=73.31  Aligned_cols=80  Identities=29%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             cCCCCcEEEecCCCCCCchhhccccHHHHhcCCCCCceeeCCCcccCCCCCchhhcCCCCCcEEeCCCCcCCCCCcc---
Q 001554          154 SLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS---  230 (1055)
Q Consensus       154 ~L~~L~~L~Ls~n~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~---  230 (1055)
                      +++.|++|.||-|+|..         .+-+..|++|++|+|..|.|.+......+.++++|+.|.|..|.-.+.-+.   
T Consensus        39 kMp~lEVLsLSvNkIss---------L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISS---------LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             hcccceeEEeecccccc---------chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            45555555555554422         122556677777777777776665555566666666666666655443321   


Q ss_pred             --cccCCCCCCEEE
Q 001554          231 --SLSKLQLLTHLN  242 (1055)
Q Consensus       231 --~l~~l~~L~~L~  242 (1055)
                        .+.-|++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence              233445555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.16  E-value=0.012  Score=55.53  Aligned_cols=60  Identities=22%  Similarity=0.291  Sum_probs=22.5

Q ss_pred             hhcCCCCCcEEeCCCCcCCCCCcccccCCCCCCEEECCCCCCCCCcchhccCCCCCcEEEcc
Q 001554          207 ILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS  268 (1055)
Q Consensus       207 ~l~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~  268 (1055)
                      .+.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ +.......|..+++|+.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344555555555543 233322334455555555555443 333333344444445555553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.14  E-value=0.00062  Score=80.97  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=15.9

Q ss_pred             CCCCceeeCCCcc-cCCCCCchhhcCCCCCcEEeCCCCc
Q 001554          186 LTNLEELYLGGID-ISGADWGPILSILSNLRILSLPDCH  223 (1055)
Q Consensus       186 l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~~~  223 (1055)
                      |++|++|.+.++. +++..+......+++|++|++++|.
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4444444444333 3333333333344444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.08  E-value=0.0022  Score=39.06  Aligned_cols=19  Identities=37%  Similarity=0.670  Sum_probs=8.4

Q ss_pred             CCEEECCCCccccccCcccc
Q 001554          891 LLVLNMSNNNFKGQIPATLG  910 (1055)
Q Consensus       891 L~~L~Ls~N~l~g~iP~~~~  910 (1055)
                      |+.||||+|+|+ .||++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344444444444 4444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.03  E-value=0.0047  Score=63.13  Aligned_cols=68  Identities=22%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             CCccccCCCcccEEeccCCcCcccCCcccCCCCCccEEeCCCC--cccccCcccccCCCCCcEEECCCCcCc
Q 001554          687 IPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN--HLAGSLPKSLSKCTSLEVLDVGKNQLN  756 (1055)
Q Consensus       687 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~  756 (1055)
                      +.........|+.|.+.+..++..  ..|..+++|++|.++.|  ++++.++.....+++|++|++++|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            555555555666666666655432  33445556666666666  445444444444555555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.96  E-value=0.0029  Score=38.59  Aligned_cols=21  Identities=43%  Similarity=0.656  Sum_probs=13.4

Q ss_pred             CCCeEeCCCCcCcccCcccccC
Q 001554          914 ELGSLDLSHNQLSGKIPEKLAT  935 (1055)
Q Consensus       914 ~L~~LdLs~N~lsg~ip~~l~~  935 (1055)
                      +|+.||||+|+|+ .||++|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566777777666 66666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.83  E-value=0.0012  Score=78.45  Aligned_cols=94  Identities=32%  Similarity=0.323  Sum_probs=41.6

Q ss_pred             HHHHhcCCCCCceeeCCCc-cc-C--CCCCchhhcCCCCCcEEeCCCCc-CCCCCccccc-CCCCCCEEECCCCC-CCCC
Q 001554          179 LEKLVKNLTNLEELYLGGI-DI-S--GADWGPILSILSNLRILSLPDCH-VAGPIHSSLS-KLQLLTHLNLDGND-LSSE  251 (1055)
Q Consensus       179 ~~~~l~~l~~L~~L~L~~n-~l-~--~~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~Ls~n~-~~~~  251 (1055)
                      +......+++|++|+++++ .. .  ..........+++|+.|+++++. ++...-..+. .+++|++|.+.++. ++..
T Consensus       206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~  285 (482)
T KOG1947|consen  206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE  285 (482)
T ss_pred             HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence            3344555555555555542 11 1  10111223444555666665555 3332222222 25566666655444 3322


Q ss_pred             cc-hhccCCCCCcEEEccCCcC
Q 001554          252 VP-DFLTNFSSLQYLHLSLCGL  272 (1055)
Q Consensus       252 ~p-~~l~~l~~L~~L~L~~n~l  272 (1055)
                      .- .....++.|++|++++|..
T Consensus       286 gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  286 GLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHHHHHhcCcccEEeeecCcc
Confidence            11 1223355666666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.00037  Score=70.83  Aligned_cols=82  Identities=29%  Similarity=0.361  Sum_probs=38.5

Q ss_pred             ccEEeccCCcCcccCCcccCCCCCccEEeCCCCcccccCcccccCCCCCcEEECCCCcCccccC-ccccCCCCCcEEEcc
Q 001554          697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFP-FWLETLPQLRVLVLQ  775 (1055)
Q Consensus       697 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~  775 (1055)
                      .+.|++.++.++++  ....+++.|+.|.|+-|+|+..-|  +..|+.|++|+|..|.|...-. ..+.++|+|++|.|.
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            33444444444432  222344555555555555553222  4455555555555555542211 124455555555555


Q ss_pred             CCcCccc
Q 001554          776 SNNYDGS  782 (1055)
Q Consensus       776 ~N~l~~~  782 (1055)
                      .|...|.
T Consensus        97 ENPCc~~  103 (388)
T KOG2123|consen   97 ENPCCGE  103 (388)
T ss_pred             cCCcccc
Confidence            5555443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.55  E-value=0.002  Score=74.46  Aligned_cols=134  Identities=26%  Similarity=0.313  Sum_probs=66.8

Q ss_pred             CCcEEeCCCCcCCCC----CcccccCCCCCCEEECCCCCCCC----Ccchhcc----CCCCCcEEEccCCcCCCcc----
Q 001554          213 NLRILSLPDCHVAGP----IHSSLSKLQLLTHLNLDGNDLSS----EVPDFLT----NFSSLQYLHLSLCGLYGRV----  276 (1055)
Q Consensus       213 ~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~Ls~n~~~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~----  276 (1055)
                      .+++|++..|.++..    +.+.+.....++.+|++.|.+..    .++..+.    ...++++|++++|.++...    
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            344455555555442    33445556666666666666531    1122222    3456666666666654211    


Q ss_pred             CcccCCCCC-CcEEEccCCCCCCCCCCCCCCCCCCcEEEccCCcCCCC----CcccccCC-CCCCEEEccCCcCCCCC--
Q 001554          277 PEKIFLMPS-LCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGK----LPDSINNL-ALLEDLELSDCNFFGSI--  348 (1055)
Q Consensus       277 p~~l~~l~~-L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~~--  348 (1055)
                      ...+...+. ++.|++.                        .|.+.+.    ....+..+ ..+++++++.|.++..-  
T Consensus       225 ~~~l~~~~~~~~el~l~------------------------~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~  280 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLA------------------------SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR  280 (478)
T ss_pred             HHHHhccchhhHHHHHH------------------------hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence            111222233 3344444                        4444322    12223334 56677777777766433  


Q ss_pred             --cccccCCCCCCEEEeecCCCCC
Q 001554          349 --PSSFGNLTELINIDFSRNNFSG  370 (1055)
Q Consensus       349 --p~~l~~l~~L~~L~Ls~n~l~~  370 (1055)
                        ...+..++.++++.+++|.+..
T Consensus       281 ~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  281 DLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHhhhHHHHHhhcccCcccc
Confidence              2334456677777777777653

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.97  E-value=0.0037  Score=72.29  Aligned_cols=187  Identities=25%  Similarity=0.259  Sum_probs=86.6

Q ss_pred             CCeeeCCCCCCCCCC---CCccCCCCCCCCEEeCCCCCCCCCCChhcc----cC-CCCcEEEecCCCCCCchhhccccHH
Q 001554          109 LQHLNLADNSLYSSP---FPSGFDRLFSLTHLNLSYSGFSGHIPLEIS----SL-KMLVSLDLSASGLVAPIQLRRANLE  180 (1055)
Q Consensus       109 L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~----~L-~~L~~L~Ls~n~~~~~~~~~~~~~~  180 (1055)
                      ++.|+|.+|.+....   +-..+.....|..|++++|.+.+.--..+.    .. ..|++|++..|.++.   .....+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~---~g~~~l~  165 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS---EGAAPLA  165 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc---cchHHHH
Confidence            444555555443321   112334445555555555555422221111    11 234445554443322   1112233


Q ss_pred             HHhcCCCCCceeeCCCcccCCCC---Cchhhc----CCCCCcEEeCCCCcCCCC----CcccccCCCC-CCEEECCCCCC
Q 001554          181 KLVKNLTNLEELYLGGIDISGAD---WGPILS----ILSNLRILSLPDCHVAGP----IHSSLSKLQL-LTHLNLDGNDL  248 (1055)
Q Consensus       181 ~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~----~l~~L~~L~L~~~~l~~~----~~~~l~~l~~-L~~L~Ls~n~~  248 (1055)
                      +.+.....+++++++.|.+....   .+..+.    ...++++|.+.+|.++..    +...+...+. +..|++..|.+
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l  245 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL  245 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence            34444555555555555443111   111222    345566666666655531    1122344444 55567776665


Q ss_pred             CCCc----chhccCC-CCCcEEEccCCcCCCcc----CcccCCCCCCcEEEccCCCCCC
Q 001554          249 SSEV----PDFLTNF-SSLQYLHLSLCGLYGRV----PEKIFLMPSLCFLDVSSNSNLT  298 (1055)
Q Consensus       249 ~~~~----p~~l~~l-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~~~~  298 (1055)
                      ....    ...+..+ ..+++++++.|.++..-    ...+..++.++.+.++.|++..
T Consensus       246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            5331    2223334 45677777777775443    3334456677777777776543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.07  E-value=0.18  Score=28.39  Aligned_cols=16  Identities=38%  Similarity=0.681  Sum_probs=5.9

Q ss_pred             ccceeecccCcCcccc
Q 001554          528 KIGTLKLSSCKITEFP  543 (1055)
Q Consensus       528 ~L~~L~L~~n~l~~ip  543 (1055)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3445555555544443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.90  E-value=0.25  Score=27.87  Aligned_cols=10  Identities=60%  Similarity=0.863  Sum_probs=3.1

Q ss_pred             CCeEeCCCCc
Q 001554          915 LGSLDLSHNQ  924 (1055)
Q Consensus       915 L~~LdLs~N~  924 (1055)
                      |+.|||++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.51  E-value=0.018  Score=57.47  Aligned_cols=83  Identities=17%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             CCcEEEEEcCCCccccccCCCCCccCCCCCCeeeCCCCCCCCCCCCccCCCCCCCCEEeCCCCCCCCCCChhcccCCCCc
Q 001554           80 TGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV  159 (1055)
Q Consensus        80 ~~~v~~L~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~L~~L~  159 (1055)
                      ..||+.||++.+.+... ..  .+..++.|..||++.|.+.-  +|+.++.+..++++++..|..+ ..|.+.+++++++
T Consensus        41 ~kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            46899999999887522 22  56678899999999988865  7899999999999999999887 8899999999999


Q ss_pred             EEEecCCCC
Q 001554          160 SLDLSASGL  168 (1055)
Q Consensus       160 ~L~Ls~n~~  168 (1055)
                      ++++-.+.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            999988754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.97  E-value=0.02  Score=57.05  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             cccccEEEccCCcccccCcccccCCCCCCEEECCCCccccccCccccCcCCCCeEeCCCCcCcccCcccccCCCCCCeEe
Q 001554          864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLK  943 (1055)
Q Consensus       864 l~~l~~LdLs~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~iP~~~~~L~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~  943 (1055)
                      ....+.||+|.|++. ..-..+..++.++.||+|.|++. -.|..++.+..+..+++..|.++ ..|.++..++.+..++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            345678999999887 34456677788889999999988 78889999999999999888887 6788899999999998


Q ss_pred             cCCCcCc
Q 001554          944 LSQNLLV  950 (1055)
Q Consensus       944 ls~N~L~  950 (1055)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8888754

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.77  E-value=0.12  Score=32.14  Aligned_cols=19  Identities=37%  Similarity=0.513  Sum_probs=8.9

Q ss_pred             CCCCeEeCCCCcCcccCcc
Q 001554          913 KELGSLDLSHNQLSGKIPE  931 (1055)
Q Consensus       913 ~~L~~LdLs~N~lsg~ip~  931 (1055)
                      ++|++|||++|+|++..+.
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            4555555555555554433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.71  E-value=0.72  Score=29.27  Aligned_cols=14  Identities=64%  Similarity=0.769  Sum_probs=7.5

Q ss_pred             CCCCeEeCCCCcCc
Q 001554          913 KELGSLDLSHNQLS  926 (1055)
Q Consensus       913 ~~L~~LdLs~N~ls  926 (1055)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.71  E-value=0.72  Score=29.27  Aligned_cols=14  Identities=64%  Similarity=0.769  Sum_probs=7.5

Q ss_pred             CCCCeEeCCCCcCc
Q 001554          913 KELGSLDLSHNQLS  926 (1055)
Q Consensus       913 ~~L~~LdLs~N~ls  926 (1055)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.55  E-value=0.29  Score=30.47  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=10.1

Q ss_pred             CCCCEEECCCCccccccCcc
Q 001554          889 DALLVLNMSNNNFKGQIPAT  908 (1055)
Q Consensus       889 ~~L~~L~Ls~N~l~g~iP~~  908 (1055)
                      ++|+.|||++|+|++.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45666666666666544433

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1055
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-52
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-52
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-18
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		6e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  204 bits (519), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 214/705 (30%), Positives = 319/705 (45%), Gaps = 102/705 (14%)
Query: 339 LSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS-----FTG 393
           LS+ +  GS+ S F     L ++D SRN+ SG + +  S      LKF + S     F G
Sbjct: 81  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 394 TIPLSYGDQLISLQVLDLRNNSLQG--IIPKSLYTK-QSIESLLLGQNKFHGQLE----- 445
            +  S G +L SL+VLDL  NS+ G  ++   L      ++ L +  NK  G ++     
Sbjct: 140 KV--SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 446 --KFQNASS-------------LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
             +F + SS              +L+ +D S NKL G    +I     L +L +SSN+F 
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 491 GFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT-EFPNFLRNQ 549
           G I     K L+ L                             L+  K T E P+FL   
Sbjct: 258 GPIPPLPLKSLQYL----------------------------SLAENKFTGEIPDFLSGA 289
Query: 550 TN-LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPN---LTSTVLAV 605
            + L  LDLS N   G +P +      G    L         F    P    L    L V
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFF-----GSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 606 LDLHSNMLQGSFPIP----PASIIFLDYSENKFTTXXXXXXXXXXXXAV-FFSLASNNLS 660
           LDL  N   G  P       AS++ LD S N F+              +    L +N  +
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
           G IP +L N  +L  L LS N+L+G+IPS L S + L+ LKL  N   G +PQ +    +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
           L TL L  N L G +P  LS CT+L  + +  N+L G  P W+  L  L +L L +N++ 
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWF-QSWR-----------------GMKK 822
           G+I   +  +  +L+  +D+++N F+G +PA  F QS +                 GMKK
Sbjct: 525 GNIP-AELGDCRSLIW-LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 823 RTKESQESQILKFVYL---ELSNLYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQ 876
               +    +L+F  +   +L+ L  ++   + ++      +       S   +D+S N 
Sbjct: 583 ECHGA--GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 877 FEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATL 936
             G IP+ +G    L +LN+ +N+  G IP  +G+L+ L  LDLS N+L G+IP+ ++ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 937 NFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKA 981
             L+ + LS N L G IP   QF TF  A F  N GLCG+PLP+ 
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  204 bits (519), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 213/705 (30%), Positives = 316/705 (44%), Gaps = 102/705 (14%)
Query: 339 LSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS-----FTG 393
           LS+ +  GS+ S F     L ++D SRN+ SG + +  S      LKF + S     F G
Sbjct: 84  LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQ---SIESLLLGQNKFHGQLE----- 445
            +  S G +L SL+VLDL  NS+ G              ++ L +  NK  G ++     
Sbjct: 143 KV--SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 446 --KFQNASS-------------LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
             +F + SS              +L+ +D S NKL G    +I     L +L +SSN+F 
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 491 GFITLEMFKDLRQLGTLELXXXXXXXXXXXXXXXXXPKIGTLKLSSCKIT-EFPNFLRNQ 549
           G I     K L+ L                             L+  K T E P+FL   
Sbjct: 261 GPIPPLPLKSLQYL----------------------------SLAENKFTGEIPDFLSGA 292
Query: 550 TN-LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPN---LTSTVLAV 605
            + L  LDLS N   G +P +      G    L         F    P    L    L V
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFF-----GSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 606 LDLHSNMLQGSFPIP----PASIIFLDYSENKFTTXXXXXXXXXXXXAV-FFSLASNNLS 660
           LDL  N   G  P       AS++ LD S N F+              +    L +N  +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
           G IP +L N  +L  L LS N+L+G+IPS L S + L+ LKL  N   G +PQ +    +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
           L TL L  N L G +P  LS CT+L  + +  N+L G  P W+  L  L +L L +N++ 
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWF-QSWR-----------------GMKK 822
           G+I   +  +  +L+  +D+++N F+G +PA  F QS +                 GMKK
Sbjct: 528 GNIP-AELGDCRSLIW-LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 823 RTKESQESQILKFVYL---ELSNLYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQ 876
               +    +L+F  +   +L+ L  ++   + ++      +       S   +D+S N 
Sbjct: 586 ECHGA--GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 877 FEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATL 936
             G IP+ +G    L +LN+ +N+  G IP  +G+L+ L  LDLS N+L G+IP+ ++ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 937 NFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKA 981
             L+ + LS N L G IP   QF TF  A F  N GLCG+PLP+ 
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 132/315 (41%), Gaps = 56/315 (17%)
Query: 669 NAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN-NEFLGTVPQVIGNECSLRTLDLS 727
           N  DL  L+L   +    IPS L +   L  L +   N  +G +P  I     L  L ++
Sbjct: 53  NNLDLSGLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 728 QNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQ 787
             +++G++P  LS+  +L  LD   N L+G+ P  + +LP L  +    N   G+I D+ 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 788 TANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
            + +  L   + IS N  +G +P                                     
Sbjct: 170 GSFS-KLFTSMTISRNRLTGKIPP------------------------------------ 192
Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
             T  N  L+            +D+S N  EG+   + G       ++++ N+    +  
Sbjct: 193 --TFANLNLAF-----------VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 908 TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASF 967
            +G  K L  LDL +N++ G +P+ L  L FL  L +S N L GEIP+G     F  +++
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298
Query: 968 EGNAGLCGFPLPKAC 982
             N  LCG PLP AC
Sbjct: 299 ANNKCLCGSPLP-AC 312

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729
           +LQ LDLS N +  S    L   N+  L+ L L +NE LG   Q       L  LDL+  
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 730 HLAGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY-DGSIKDTQ 787
            L  + P+S       L+VL++    L+ S    L  LP LR L L+ N++ DG+I  T 
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 788 TANAFALLQIIDISS 802
                  L+++ +SS
Sbjct: 468 LLQTVGSLEVLILSS 482

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1055
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-167
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-154
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-75
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-60
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  509 bits (1314), Expect = e-167
 Identities = 212/798 (26%), Positives = 316/798 (39%), Gaps = 92/798 (11%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
           ++++ + S P       + SSL  L  L  L L  + ++  V  F    +SL  L LS  
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK-CSASLTSLDLSRN 110

Query: 271 GLYGRVPEKIFL--MPSLCFLDVSSNS-NLTGSLPEFPPSSQLKVIELSETRFSGKLPDS 327
            L G V     L     L FL+VSSN+ +  G +      + L+V++LS    SG     
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 328 I---NNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISL 384
               +    L+ L +S     G +         L  +D S NNFS  +P     + +  L
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228

Query: 385 KFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL 444
             + N  +G    +       L++L++ +N   G IP       S++ L L +NKF G++
Sbjct: 229 DISGNKLSGDFSRAIS-TCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEI 285

Query: 445 EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQL 504
             F + +  +L  +D S N   G VP        L  L LSSN FSG + ++    +R L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345

Query: 505 GTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT-EFPNFLRN--QTNLFHLDLSNNR 561
             L+LS N FS  +  S +N+   + TL LSS   +      L    +  L  L L NN 
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 562 IKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP 621
             G+IP    N                            + L  L L  N L G+     
Sbjct: 406 FTGKIPPTLSN---------------------------CSELVSLHLSFNYLSGT----- 433

Query: 622 ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDN 681
                           IP ++G+         L  N L G IP  L     L+ L L  N
Sbjct: 434 ----------------IPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476

Query: 682 HLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSK 741
            LTG IPS L +   L  + L NN   G +P+ IG   +L  L LS N  +G++P  L  
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536

Query: 742 CTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDIS 801
           C SL  LD+  N  NG+ P  +          + +N   G        +          +
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 802 SNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELA 861
              F G    +  +                        LS     +  + +  G +    
Sbjct: 593 LLEFQGIRSEQLNR------------------------LSTRNPCNITSRVYGGHTSPTF 628

Query: 862 KILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLS 921
                   +D+S N   G IP+ +G    L +LN+ +N+  G IP  +G+L+ L  LDLS
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688

Query: 922 HNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKA 981
            N+L G+IP+ ++ L  L+ + LS N L G IP   QF TF  A F  N GLCG+PLP+ 
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

Query: 982 CQNALPPVEQTTKDEEGS 999
             +         +     
Sbjct: 749 DPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  475 bits (1225), Expect = e-154
 Identities = 216/771 (28%), Positives = 338/771 (43%), Gaps = 78/771 (10%)

Query: 32  CLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSS 91
            L  +   L+ FK  L         N L  WSS  + C++DGVTC      V  +D+SS 
Sbjct: 9   SLYREIHQLISFKDVL------PDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK 60

Query: 92  FITGGING-SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIP- 149
            +  G +  SSSL  L  L+ L L+++ +  S   SGF    SLT L+LS +  SG +  
Sbjct: 61  PLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 150 -LEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGA--DWGP 206
              + S   L  L++S++ L  P ++           L +LE L L    ISGA      
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVS------GGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 207 ILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLH 266
           +      L+ L++    ++G +   +S+   L  L++  N+ S+ +P FL + S+LQ+L 
Sbjct: 173 LSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLD 229

Query: 267 LSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPD 326
           +S   L G     I     L  L++SSN    G +P   P   L+ + L+E +F+G++PD
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL-PLKSLQYLSLAENKFTGEIPD 287

Query: 327 SI-NNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP--SFASSNKVIS 383
            +      L  L+LS  +F+G++P  FG+ + L ++  S NNFSG LP  +      +  
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSL--YTKQSIESLLLGQNKFH 441
           L  + N F+G +P S  +   SL  LDL +N+  G I  +L    K +++ L L  N F 
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 442 GQL-EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
           G++     N S   L  +  S N L G +P S+  +  L  L+L  N   G I  E+   
Sbjct: 408 GKIPPTLSNCS--ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY- 464

Query: 501 LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNN 560
           ++ L TL L  N+ +              G +          P+ L N TNL  + LSNN
Sbjct: 465 VKTLETLILDFNDLT--------------GEI----------PSGLSNCTNLNWISLSNN 500

Query: 561 RIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGP------NLTSTVLAVLDLHSNMLQ 614
           R+ GEIP W   +    L  L LS+N        G       +  S  L  LDL++N+  
Sbjct: 501 RLTGEIPKWIGRL--ENLAILKLSNNSFS-----GNIPAELGDCRS--LIWLDLNTNLFN 551

Query: 615 GSFPIPPA-SIIFLDYSENKFTTNIPYNIGNYINYAVFF-SLASNNLSGGIPLSLCNAFD 672
           G+  IP A        + N         I N         +       G     L     
Sbjct: 552 GT--IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA 732
               +++     G       ++  +  L +  N   G +P+ IG+   L  L+L  N ++
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 733 GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSI 783
           GS+P  +     L +LD+  N+L+G  P  +  L  L  + L +NN  G I
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  289 bits (743), Expect = 2e-85
 Identities = 106/686 (15%), Positives = 219/686 (31%), Gaps = 72/686 (10%)

Query: 289 LDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI 348
            D S    LT    + P +  + V+ L+  +       +    + L  L++         
Sbjct: 9   ADCSHL-KLTQVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 349 PSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQ 407
           P     L  L  ++   N  S     +FA    +  L    NS        +     +L 
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLI 124

Query: 408 VLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQ 466
            LDL +N L      +    ++++ LLL  NK    + E+    ++ SL++++ S N+++
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD--LRQLGTLELSENNFSFNVSGSNSN 524
              P     I  L  L L++ +    +T ++  +     +  L LS +  S   + +   
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244

Query: 525 M-FPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLN 582
           + +  +  L LS   +     +       L +  L  N I+    +    +    + +LN
Sbjct: 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVRYLN 302

Query: 583 LSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNI 642
           L  +  +                                        S         ++ 
Sbjct: 303 LKRSFTK-------------------------------------QSISLASLPKIDDFSF 325

Query: 643 GNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI----LK 698
                     ++  N++ G          +L+ L LS++  +    +     ++    L 
Sbjct: 326 QWLKC-LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 699 VLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCTSLEVLDVGKNQLNG 757
           +L L  N+              L  LDL  N +   L         ++  + +  N+   
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 758 SFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
                   +P L+ L+L+                   L I+D+S+NN +  +     +  
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGL 503

Query: 818 RGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQF 877
             ++                L+L +          N G  +   K L+    +++ +N F
Sbjct: 504 EKLE---------------ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 878 EGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLAT-L 936
           +    E+  D   L ++++  NN      +   N   L SL+L  N ++    +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 937 NFLSVLKLSQNLLVGEIPRGPQFATF 962
             L+ L +  N           F  +
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  270 bits (693), Expect = 1e-78
 Identities = 139/729 (19%), Positives = 238/729 (32%), Gaps = 118/729 (16%)

Query: 108 RLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASG 167
             +  + +   L     P       ++T LNL+++          +    L SLD+  + 
Sbjct: 5   SHEVADCSHLKLTQ--VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN- 59

Query: 168 LVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGP 227
                             ++ LE                +   L  L++L+L    ++  
Sbjct: 60  -----------------TISKLEP--------------ELCQKLPMLKVLNLQHNELSQL 88

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLC 287
              + +    LT L+L  N +     +      +L  L LS  GL          + +L 
Sbjct: 89  SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148

Query: 288 FLDVSSN--SNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFF 345
            L +S+N    L     +   +S LK +ELS  +     P   + +  L  L L++    
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 346 GSIPSSFG---NLTELINIDFSRNNFSGSLPSFASSNKVISLK---FAHNSFTGTIPLSY 399
            S+          T + N+  S +  S +  +     K  +L     ++N+       S+
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMD 459
              L  L+   L  N++Q +   SL+   ++  L L ++                  +  
Sbjct: 269 AW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS----------------FTKQS 311

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVS 519
            S   L  +   S   +K L  L +  N   G I   MF  L  L  L LS +  S    
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 520 GSN---SNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGD 575
            +    S     +  L L+  KI++   +      +L  LDL  N I  E+    W  G 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GL 429

Query: 576 GKLVHLNLSHNMLEAFEKPG-PNLTSTVLAVLDLHSNMLQGSFPIPPA-----SIIFLDY 629
             +  + LS+N      +     + S  L  L L    L+     P       ++  LD 
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPS--LQRLMLRRVALKNVDSSPSPFQPLRNLTILD- 486

Query: 630 SENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPS 689
                                   L++NN++      L     L++LDL  N+L      
Sbjct: 487 ------------------------LSNNNIANINDDMLEGLEKLEILDLQHNNLA----- 517

Query: 690 CLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD 749
                      +L  +   G     +     L  L+L  N       +       L+++D
Sbjct: 518 -----------RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNL 809
           +G N LN            L+ L LQ N      K      AF  L  +D+  N F    
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV-FGPAFRNLTELDMRFNPFDCTC 625

Query: 810 PA-RWFQSW 817
            +  WF +W
Sbjct: 626 ESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (541), Expect = 4e-58
 Identities = 104/574 (18%), Positives = 191/574 (33%), Gaps = 69/574 (12%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L + S+ I    N        + L  L+L+ N L S+       +L +L  L LS +   
Sbjct: 102 LHLMSNSIQKIKNNP--FVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQ 158

Query: 146 GHIPLEISSLKM--LVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGA- 202
                E+       L  L+LS++ +                 +  L  L+L  + +  + 
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFS-------PGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 203 -DWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQL--LTHLNLDGNDLSSEVPDFLTNF 259
            +   +    +++R LSL +  ++   +++   L+   LT L+L  N+L+    D     
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 260 SSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETR 319
             L+Y  L    +       +  + ++ +L++  +                    +S   
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------------FTKQSISLAS 316

Query: 320 FSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSN 379
                  S   L  LE L + D +  G   + F  L  L  +  S +  S    +     
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT----- 371

Query: 380 KVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNK 439
                   + +F              L +L+L  N +  I   +      +E L LG N+
Sbjct: 372 --------NETFVSL-------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 440 FHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFIT-LEMF 498
              +L   +     ++ E+  S NK   L   S   +  L  L L         +    F
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 499 KDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEF---------PNFLRNQ 549
           + LR L  L+LS NN +         +  K+  L L    +              FL+  
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
           ++L  L+L +N           ++   +L  ++L  N L              L  L+L 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDL--FELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQ 592

Query: 610 SNMLQG----SFPIPPASIIFLDYSENKFTTNIP 639
            N++       F     ++  LD   N F     
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (527), Expect = 3e-56
 Identities = 109/574 (18%), Positives = 183/574 (31%), Gaps = 89/574 (15%)

Query: 404 ISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK-FQNASSLSLREMDFSQ 462
           +S +V D  +  L   +P  L T  +I  L L  N+        F   S   L  +D   
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDLPT--NITVLNLTHNQLRRLPAANFTRYS--QLTSLDVGF 58

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN 522
           N +  L PE   ++  L VL L  N+ S     + F     L  L L  N+     +   
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 523 SNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
                 + TL LS   ++           NL  L LSNN+I+           +  L  L
Sbjct: 118 VKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 582 NLSHNMLEAFEKPG-PNLTSTVLAVLDLHSNMLQGSFP------IPPASIIFLDYSENKF 634
            LS N ++ F       +    L  L L++  L  S        +   SI  L  S ++ 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGR--LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 635 TTNIPYNIGNYINYA-VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS 693
           +T                  L+ NNL+     S      L+   L  N++       L  
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

Query: 694 SNILKVLKLRNNEFLGTV---------PQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTS 744
              ++ L L+ +    ++                  L  L++  N + G      +   +
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 745 LEVLDVGKNQLNGSFP----FWLETLPQLRVLVLQSNNYDGSIKDTQTANAFA---LLQI 797
           L+ L +  +  +        F       L +L L  N           ++AF+    L++
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-----SDAFSWLGHLEV 409

Query: 798 IDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLS 857
           +D+  N     L  + ++                        L N++             
Sbjct: 410 LDLGLNEIGQELTGQEWRG-----------------------LENIFE------------ 434

Query: 858 MELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKG--QIPATLGNLKEL 915
                       I +S N++            +L  L +     K     P+    L+ L
Sbjct: 435 ------------IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 916 GSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
             LDLS+N ++    + L  L  L +L L  N L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  189 bits (481), Expect = 2e-50
 Identities = 109/546 (19%), Positives = 187/546 (34%), Gaps = 47/546 (8%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L +S++ I    +    +F    L+ L L+ N +     P  F  +  L  L L+     
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLG 208

Query: 146 GHIPLEIS---SLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGA 202
             +  ++    +   + +L LS S L          L       TNL  L L   +++  
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-----KWTNLTMLDLSYNNLNVV 263

Query: 203 DWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGN---------DLSSEVP 253
                 + L  L    L   ++      SL  L  + +LNL  +          L     
Sbjct: 264 G-NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322

Query: 254 DFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSN----SNLTGSLPEFPPSSQ 309
                   L++L++    + G        + +L +L +S++      LT         S 
Sbjct: 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

Query: 310 LKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIP-SSFGNLTELINIDFSRNNF 368
           L ++ L++ + S    D+ + L  LE L+L        +    +  L  +  I  S N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 369 SGSLP-SFASSNKVISLKFAHNSFTG-TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT 426
                 SFA    +  L     +        S    L +L +LDL NN++  I    L  
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 427 KQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSS 486
            + +E L L  N                       ++   G     +  +  L++L L S
Sbjct: 503 LEKLEILDLQHNNLA-----------------RLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 487 NKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN-- 544
           N F   I +E+FKDL +L  ++L  NN +   +   +N    + +L L    IT      
Sbjct: 546 NGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITSVEKKV 603

Query: 545 FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLA 604
           F     NL  LD+  N       +  W V      H N+            P+     + 
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663

Query: 605 VLDLHS 610
           + D  S
Sbjct: 664 LFDTSS 669

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (370), Expect = 3e-36
 Identities = 73/349 (20%), Positives = 122/349 (34%), Gaps = 28/349 (8%)

Query: 627 LDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGS 686
            D S  K T  +P ++   I      +L  N L      +      L  LD+  N ++  
Sbjct: 9   ADCSHLKLTQ-VPDDLPTNITV---LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 687 IPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLE 746
            P       +LKVL L++NE      +      +L  L L  N +         K  +L 
Sbjct: 65  EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124

Query: 747 VLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFS 806
            LD+  N L+ +       L  L+ L+L +N       +     A + L+ +++SSN   
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 807 GNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTI 866
                  F +               I +   L L+N+    S+T   + L +ELA   T 
Sbjct: 185 E-FSPGCFHA---------------IGRLFGLFLNNVQLGPSLT---EKLCLELA--NTS 223

Query: 867 FTSIDVSNNQFEGEIPEMLGDFD--ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQ 924
             ++ +SN+Q                L +L++S NN       +   L +L    L +N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 925 LSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAASFEGNAGL 973
           +       L  L  +  L L ++     I            SF+    L
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-SLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.8 bits (213), Expect = 3e-17
 Identities = 43/246 (17%), Positives = 75/246 (30%), Gaps = 37/246 (15%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
            S    D S   L   +P  L   T++ VL++  NQL            QL  L +  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 779 YDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKF 835
                             +L+++++  N  S  L  + F                  L  
Sbjct: 61  ISKLE-----PELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTN-------------LTE 101

Query: 836 VYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLN 895
           ++L  +++    +   +                ++D+S+N             + L  L 
Sbjct: 102 LHLMSNSIQKIKNNPFVK----------QKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 896 MSNNNFKGQIPATLGNLK--ELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEI 953
           +SNN  +      L       L  L+LS NQ+    P     +  L  L L+   L   +
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 954 PRGPQF 959
                 
Sbjct: 212 TEKLCL 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  258 bits (660), Expect = 8e-75
 Identities = 121/593 (20%), Positives = 209/593 (35%), Gaps = 68/593 (11%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNL 297
             +L+L  N L         +F  LQ L LS C +          +  L  L ++ N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 298 TGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNF-FGSIPSSFGNLT 356
           + +L  F   S L+ +   ET  +      I +L  L++L ++        +P  F NLT
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 357 ELINIDFSRNNFSGSLPS-----FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
            L ++D S N       +            +SL  + N      P ++  + I L  L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTL 207

Query: 412 RNNSLQGIIPKSLYTKQS---IESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL 468
           RNN     + K+     +   +  L+LG+ +  G LEKF  ++   L  +   +      
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF----- 262

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
                         RL+   +     +++F  L  + +  L           S       
Sbjct: 263 --------------RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFG 305

Query: 529 IGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNML 588
              L+L +CK  +FP       +L  L  ++N+                L  L+LS N L
Sbjct: 306 WQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEV----DLPSLEFLDLSRNGL 359

Query: 589 EAFEKPGPNLTSTV-LAVLDLHSNMLQGSFP--IPPASIIFLDYSENKFTTNIPYNIGNY 645
                   +   T  L  LDL  N +       +    +  LD+  +       +++   
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--- 416

Query: 646 INYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNN 705
                                  +  +L  LD+S  H   +        + L+VLK+  N
Sbjct: 417 ---------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 706 EFLGTV-PQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLE 764
            F     P +     +L  LDLSQ  L    P + +  +SL+VL++  N       F  +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 765 TLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
            L  L+VL    N+   S K     +  + L  ++++ N+F+     + F  W
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  226 bits (579), Expect = 9e-64
 Identities = 125/672 (18%), Positives = 203/672 (30%), Gaps = 136/672 (20%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
              N    +P+  P S  K ++LS          S  +   L+ L+LS C        ++
Sbjct: 15  MELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 353 GNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
            +L+ L  +  + N        +F+  + +  L     +         G  L +L+ L++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNV 131

Query: 412 RNNSLQGI-IPKSLYTKQSIESLLLGQNKFHGQLEK-FQNASSLSLREM--DFSQNKLQG 467
            +N +Q   +P+      ++E L L  NK         +    + L  +  D S N +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 468 LVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFP 527
           + P +  +I+ L+ L L +N  S  +     + L  L    L    F       N     
Sbjct: 192 IQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR------NEGNLE 244

Query: 528 KIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNM 587
           K     L                 L +L +   R                L +L+   + 
Sbjct: 245 KFDKSALE---------------GLCNLTIEEFR----------------LAYLDYYLDD 273

Query: 588 LEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYI 646
           +        N++S       L S  ++             L+    KF       + +  
Sbjct: 274 IIDLFNCLTNVSS-----FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-- 326

Query: 647 NYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT--GSIPSCLVSSNILKVLKLRN 704
                  L   +  GG   S  +   L+ LDLS N L+  G        +  LK L L  
Sbjct: 327 ----LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 705 NEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWL 763
           N  + T+         L  LD   ++L      S      +L  LD+       +F    
Sbjct: 383 NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 764 ETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKR 823
             L  L VL                           ++ N+F  N     F         
Sbjct: 442 NGLSSLEVL--------------------------KMAGNSFQENFLPDIFTE------- 468

Query: 824 TKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPE 883
                           L NL                        T +D+S  Q E   P 
Sbjct: 469 ----------------LRNL------------------------TFLDLSQCQLEQLSPT 488

Query: 884 MLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATL-NFLSVL 942
                 +L VLNMS+NNF          L  L  LD S N +     ++L    + L+ L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 943 KLSQNLLVGEIP 954
            L+QN       
Sbjct: 549 NLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  215 bits (550), Expect = 6e-60
 Identities = 108/554 (19%), Positives = 181/554 (32%), Gaps = 41/554 (7%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+S + +      S S F    LQ L+L+   + +      +  L  L+ L L+ +   
Sbjct: 33  LDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQ 89

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
                  S L  L  L    + L +            + +L  L+EL +    I      
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLE-------NFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLT----HLNLDGNDLSSEVPDFLTNFSS 261
              S L+NL  L L    +     + L  L  +      L+L  N ++   P        
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R 201

Query: 262 LQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN-LTGSLPEFPPSS-----QLKVIE 314
           L  L L        V +     +  L    +        G+L +F  S+      L + E
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 315 LSETR---FSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS 371
                   +   + D  N L  +    L           S+       +++     F   
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQF 319

Query: 372 LPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQ--GIIPKSLYTKQS 429
                 S K   L F  N             L SL+ LDL  N L   G   +S +   S
Sbjct: 320 PTLKLKSLK--RLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 430 IESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQ-IKGLNVLRLSSNK 488
           ++ L L  N        F       L  +DF  + L+ +   S+F  ++ L  L +S   
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 489 FSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEF-PNFLR 547
                   +F  L  L  L+++ N+F  N           +  L LS C++ +  P    
Sbjct: 433 TRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 548 NQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLD 607
           + ++L  L++S+N            +    L  L+ S N +   +K       + LA L+
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCL--NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549

Query: 608 LHSNMLQGSFPIPP 621
           L  N    +     
Sbjct: 550 LTQNDFACTCEHQS 563

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  207 bits (528), Expect = 5e-57
 Identities = 122/649 (18%), Positives = 195/649 (30%), Gaps = 105/649 (16%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGL 168
            ++L+L+ N L        F     L  L+LS             SL  L +L L+ + +
Sbjct: 30  TKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 169 VAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAG-P 227
            +               L++L++L     +++  +  PI   L  L+ L++    +    
Sbjct: 89  QSLA-------LGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFK 140

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLC 287
           +    S L  L HL+L  N + S     L     +  L+LS                   
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS------------------- 181

Query: 288 FLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLP-DSINNLALLEDLELSDCNFFG 346
            LD+S N  +    P      +L  + L     S  +    I  LA LE   L    F  
Sbjct: 182 -LDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 347 S------IPSSFGNLTELINIDFSRNNFSGSLP----SFASSNKVISLKFAHNSFTGTIP 396
                    S+   L  L   +F        L      F     V S      +      
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 397 LSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLR 456
            SY       Q L+L N          L   +S++ L    NK         +  SL   
Sbjct: 300 FSY---NFGWQHLELVNCKFGQFPTLKL---KSLKRLTFTSNKGGN-AFSEVDLPSLEFL 352

Query: 457 EMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSF 516
           ++  +    +G   +S F    L  L LS N          F  L QL  L+   +N   
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQ 410

Query: 517 NVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG 576
                                      +   +  NL +LD+S+   +         +   
Sbjct: 411 MSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--S 445

Query: 577 KLVHLNLSHNMLEAFEKPG--PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKF 634
            L  L ++ N  +    P     L +  L  LDL    L+    + P +   L       
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRN--LTFLDLSQCQLEQ---LSPTAFNSL------- 493

Query: 635 TTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSS 694
            +++              +++ NN              LQVLD S NH+  S    L   
Sbjct: 494 -SSL-----------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 695 NI-LKVLKLRNNEFLGTVPQV--IGNECSLRTLDLSQNHLAGSLPKSLS 740
              L  L L  N+F  T      +      R L +    +  + P    
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  198 bits (505), Expect = 7e-54
 Identities = 103/520 (19%), Positives = 186/520 (35%), Gaps = 45/520 (8%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L    + +    N    +  L+ L+ LN+A N + S   P  F  L +L HL+LS +   
Sbjct: 105 LVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 146 GHIPLEISSLKML----VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISG 201
                ++  L  +    +SLDLS + +          ++        L +L L     S 
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPM--------NFIQPGAFKEIRLHKLTLRNNFDSL 214

Query: 202 ADWGPILSILSNLRILSL------PDCHVAGPIHSSLSKLQLLTHLNLDGNDLS---SEV 252
                 +  L+ L +  L       + ++     S+L  L  LT        L     ++
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 253 PDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKV 312
            D     +++    L    +     +          L++ +         +FP      +
Sbjct: 275 IDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCK-----FGQFPTLKLKSL 327

Query: 313 IELSETRFSGKLPDSINNLALLEDLELSD--CNFFGSIPSSFGNLTELINIDFSRNNFSG 370
             L+ T   G    S  +L  LE L+LS    +F G    S    T L  +D S N    
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
              +F    ++  L F H++       S    L +L  LD+ +   +           S+
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 431 ESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
           E L +  N F             +L  +D SQ +L+ L P +   +  L VL +S N F 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 491 GFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLS------SCKITEFPN 544
              T   +K L  L  L+ S N+   +      +    +  L L+      +C+   F  
Sbjct: 508 SLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

Query: 545 FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLS 584
           ++++Q  L    +   R++   P+    +    ++ LN++
Sbjct: 567 WIKDQRQLL---VEVERMECATPSDKQGM---PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (427), Expect = 7e-44
 Identities = 99/600 (16%), Positives = 165/600 (27%), Gaps = 130/600 (21%)

Query: 362 DFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIP 421
                NF   +P     +   +L  + N        S+      LQVLDL    +Q I  
Sbjct: 13  QCMELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIED 69

Query: 422 KSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLN 480
            +  +   + +L+L  N      L  F   SSL  +++   +  L  L    I  +K L 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL--QKLVAVETNLASLENFPIGHLKTLK 127

Query: 481 VLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT 540
            L ++ N    F   E F +L  L  L+LS N                +  + L      
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLL----- 178

Query: 541 EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTS 600
                         LDLS N +    P     +   +L  L L +N              
Sbjct: 179 -----------NLSLDLSLNPMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 601 TVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLS 660
             L V  L     +    +         + ++         I         F LA  +  
Sbjct: 225 AGLEVHRLVLGEFRNEGNLE-------KFDKSALEGLCNLTIEE-------FRLAYLDYY 270

Query: 661 GG-IPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNEC 719
              I        ++    L    +              + L+L N +F       + +  
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKS-- 326

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN--GSFPFWLETLPQLRVLVLQSN 777
            L+ L  + N   G    S     SLE LD+ +N L+  G                    
Sbjct: 327 -LKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS--------- 374

Query: 778 NYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVY 837
                            L+ +D+S N     + + +                        
Sbjct: 375 -----------------LKYLDLSFNGVIT-MSSNF------------------------ 392

Query: 838 LELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIP-EMLGDFDALLVLNM 896
           L L  L                          +D  ++  +      +      L+ L++
Sbjct: 393 LGLEQL------------------------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 897 SNNNFKGQIPATLGNLKELGSLDLSHNQLSGKI-PEKLATLNFLSVLKLSQNLLVGEIPR 955
           S+ + +         L  L  L ++ N       P+    L  L+ L LSQ  L    P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  134 bits (340), Expect = 8e-33
 Identities = 83/467 (17%), Positives = 138/467 (29%), Gaps = 81/467 (17%)

Query: 513 NFSFNVSGSN-----SNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEI 566
           N ++     N      N+      L LS   +         +   L  LDLS   I+   
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGP-NLTSTVLAVLDLHSNMLQGSFPIPPASII 625
                ++    L  L L+ N +++        L+S  L  L      L      P   + 
Sbjct: 69  DGAYQSLS--HLSTLILTGNPIQSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLK 124

Query: 626 FLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGG-IPLSLCNAFDLQVLDLSDNHLT 684
            L                         ++A N +    +P    N  +L+ LDLS N + 
Sbjct: 125 TLKE----------------------LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 685 GSIPSCLVSSNILKV----LKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK-SL 739
               + L   + + +    L L  N  +  +      E  L  L L  N  + ++ K  +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 740 SKCTSLEVLDVGKNQLNGSFPFW------LETLPQLRVLVLQSNNYDGSIKDTQTA-NAF 792
                LEV  +   +              LE L  L +   +    D  + D     N  
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 793 ALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLM 852
             +    + S          +   W+                  +LEL N  +    TL 
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQ------------------HLELVNCKFGQFPTLK 323

Query: 853 NKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNN--NFKGQIPATLG 910
            K L             +  ++N+      E+  D  +L  L++S N  +FKG    +  
Sbjct: 324 LKSL-----------KRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 911 NLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGP 957
               L  LDLS N +   +      L  L  L    + L        
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  239 bits (612), Expect = 7e-68
 Identities = 88/637 (13%), Positives = 178/637 (27%), Gaps = 97/637 (15%)

Query: 115 ADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQL 174
            +  ++ +      +    +T L+L   G SG +P  I  L  L  L L + G     +L
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 175 RRANLEKLVKNLTNLEELYLGGIDISGADWGPI-LSILSNLRILSLPDCHVAGPIHSSLS 233
                 K +    + E+     +               S+L    +        I  S  
Sbjct: 124 ---FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 234 KLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSS 293
                T +    N+++  V   +   + L+  ++                          
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMG------------------------- 214

Query: 294 NSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFG 353
           NS               +       +         +NL  L D+E+ +C     +P+   
Sbjct: 215 NSPFVAE----NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 354 NLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
            L E+  I+ + N              +                        +Q++ +  
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADA----------------PVGEKIQIIYIGY 314

Query: 414 NSLQGI-IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPES 472
           N+L+   +  SL   + +  L    N+  G+L  F +     L  ++ + N++  +    
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEI--KLASLNLAYNQITEIPANF 372

Query: 473 IFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTL 532
               + +  L  + NK      +   K +  +  ++ S N                    
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG----------------- 415

Query: 533 KLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFE 592
            +                N+  ++LSNN+I               L  +NL  NML    
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTEIP 473

Query: 593 KPGPNLTS------TVLAVLDLHSNMLQGSFPIPPA-------SIIFLDYSENKFTTNIP 639
           K      +       +L  +DL  N L     +           ++ +D S N F+   P
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTK---LSDDFRATTLPYLVGIDLSYNSFSK-FP 529

Query: 640 YNIGN-----YINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSS 694
               N                 N      P  +     L  L +  N +   +   +  +
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPN 588

Query: 695 NILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
             + VL +++N  +      +          L  +  
Sbjct: 589 --ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (609), Expect = 1e-67
 Identities = 95/685 (13%), Positives = 207/685 (30%), Gaps = 107/685 (15%)

Query: 35  DQKLLLLEFKRGLSFDPQT---DSTNKLLSWSSTTDCCSW---DGVTCDPRTGHVIGLDI 88
              L L E    L+    +     T    +W+   +   W    GV+ +   G V GL +
Sbjct: 30  KDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSL 88

Query: 89  SSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHI 148
                +G +    ++  L  L+ L L  +    +    G   + +             + 
Sbjct: 89  EGFGASGRV--PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 149 PLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPIL 208
              +         DL    + +  Q    +++K  +      ++     +I+       +
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQ--KSIKKSSRITLKDTQIGQLSNNITF--VSKAV 202

Query: 209 SILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
             L+ LR   + +            + +   +                 N   L  + + 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVY 257

Query: 269 LCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSI 328
            C    ++P  +  +P +  ++V+ N  ++                  + +   +     
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGIS----------------GEQLKDDWQALADA 301

Query: 329 NNLALLEDLELSDCNFF-GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFA 387
                ++ + +   N     + +S   + +L  ++   N   G LP+F            
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG----------- 350

Query: 388 HNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKF 447
                           I L  L+L  N +  I        + +E+L    NK       F
Sbjct: 351 --------------SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396

Query: 448 QNASSLSLREMDFSQNKLQGLV-------PESIFQIKGLNVLRLSSNKFSGFITLEMFKD 500
              S   +  +DFS N++  +          + F+   ++ + LS+N+ S F   E+F  
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFST 455

Query: 501 LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNN 560
              L ++ L  N  +                 ++    + +     +N   L  +DL  N
Sbjct: 456 GSPLSSINLMGNMLT-----------------EIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 561 RIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP 620
           ++   + +         LV ++LS+N    F     N ++  L    + +          
Sbjct: 499 KLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST--LKGFGIRNQ--------- 546

Query: 621 PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSD 680
                  D   N+     P  I           + SN++   +   +    ++ VLD+ D
Sbjct: 547 ------RDAQGNRTLREWPEGITL-CPSLTQLQIGSNDIR-KVNEKITP--NISVLDIKD 596

Query: 681 NHLTGSIPSCLVSSNILKVLKLRNN 705
           N       S +       +  L  +
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  231 bits (591), Expect = 4e-65
 Identities = 101/590 (17%), Positives = 192/590 (32%), Gaps = 59/590 (10%)

Query: 218 SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS----LCGLY 273
           +            SL+    +T L+L+G   S  VPD +   + L+ L L          
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 274 GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPP--SSQLKVIELSETRFSGKLPDSINNL 331
              P+ I    S               +   P    S L    ++       +  S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 332 ALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSF 391
                +     N    +  +   LT+L       + F       A  N        +   
Sbjct: 183 LKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN----ENSEYAQQ 237

Query: 392 TGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNAS 451
             T  L +   L  L  +++ N      +P  L     ++ + +  N+     +   +  
Sbjct: 238 YKTEDLKWD-NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 452 SL-------SLREMDFSQNKLQGL-VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQ 503
           +L        ++ +    N L+   V  S+ ++K L +L    N+  G +    F    +
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL--PAFGSEIK 354

Query: 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN--FLRNQTNLFHLDLSNNR 561
           L +L L+ N  +  +  +      ++  L  +  K+   PN    ++ + +  +D S N 
Sbjct: 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413

Query: 562 IKGEIPNWTWNVGDG-----KLVHLNLSHNMLEAFEKP-GPNLTSTVLAVLDLHSNMLQG 615
           I          +         +  +NLS+N +  F K      +   L+ ++L  NML  
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP--LSSINLMGNMLTE 471

Query: 616 SFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP-LSLCNAFDLQ 674
              IP  S+            +   N  N         L  N L+             L 
Sbjct: 472 ---IPKNSL-----------KDENENFKNTYL-LTSIDLRFNKLTKLSDDFRATTLPYLV 516

Query: 675 VLDLSDNHLTGSIPSCLVSSNILKVLKLRN------NEFLGTVPQVIGNECSLRTLDLSQ 728
            +DLS N  +   P+  ++S+ LK   +RN      N  L   P+ I    SL  L +  
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 729 NHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           N +   + + +    ++ VLD+  N        ++    +  + +L  + 
Sbjct: 576 NDI-RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  212 bits (542), Expect = 1e-58
 Identities = 91/646 (14%), Positives = 191/646 (29%), Gaps = 125/646 (19%)

Query: 327 SINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKF 386
           S+N+   +  L L      G +P + G LTEL  +    +    +   F           
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF----------- 124

Query: 387 AHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSL--YTKQSIESLLLGQNKFHGQL 444
                    P       +S +         Q              +    +  +     +
Sbjct: 125 --------GPKGIS-ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 445 EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQL 504
           +K     +L   ++    N +  +  +++ ++  L    + ++ F      E      + 
Sbjct: 176 KKSSR-ITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICE----AWEN 229

Query: 505 GTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC-KITEFPNFLRNQTNLFHLDLSNNRIK 563
              E ++   + ++   N      +  +++ +C  +T+ P FL+    +  ++++ NR  
Sbjct: 230 ENSEYAQQYKTEDLKWDN---LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 564 G------EIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGP--NLTSTVLAVLDLHSNMLQG 615
                  +           K+  + + +N L+ F        +    L +L+   N L+G
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK--LGMLECLYNQLEG 344

Query: 616 SFPIPPA-----SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP--LSLC 668
                PA      +  L+ + N+ T  IP N   +       S A N L   IP      
Sbjct: 345 ---KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK 399

Query: 669 NAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQ 728
           +   +  +D S N +                           +        ++ +++LS 
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNF-----------------DPLDPTPFKGINVSSINLSN 442

Query: 729 NHLAGSLPKSLSKCTSLEVLDVGKNQLNG-------SFPFWLETLPQLRVLVLQSNNYDG 781
           N ++    +  S  + L  +++  N L               +    L  + L+ N    
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 782 SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELS 841
              D +       L  ID+S N+FS   P +                            S
Sbjct: 503 LSDDFRATT-LPYLVGIDLSYNSFSK-FPTQPLN------------------------SS 536

Query: 842 NLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNF 901
            L                  K   I    D   N+   E PE +    +L  L + +N+ 
Sbjct: 537 TL------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 902 KGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
           +  +   +     +  LD+  N         +       +  L  +
Sbjct: 579 RK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  178 bits (453), Expect = 5e-47
 Identities = 74/531 (13%), Positives = 154/531 (29%), Gaps = 75/531 (14%)

Query: 451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
           S+  +  +        G VP++I Q+  L VL L S+       L   K +    + E  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 511 ENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWT 570
           +                       S               +L    ++++  +  I   +
Sbjct: 139 QKMRM----HYQKTFVDYDPREDFS---------------DLIKDCINSDPQQKSIKKSS 179

Query: 571 WNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYS 630
                 K   +    N +    K    LT   L    + ++           +    +  
Sbjct: 180 RI--TLKDTQIGQLSNNITFVSKAVMRLTK--LRQFYMGNSPFVAE--NICEAWENENSE 233

Query: 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT------ 684
             +          N  +      + +      +P  L    ++Q+++++ N         
Sbjct: 234 YAQQYKTEDLKWDNLKDL-TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 685 --GSIPSCLVSSNILKVLKLRNNEFL-GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSK 741
                 +       ++++ +  N      V   +     L  L+   N L G LP +   
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351

Query: 742 CTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDIS 801
              L  L++  NQ+      +     Q+  L   ++N    I +   A + +++  ID S
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSF-AHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 802 SNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNK--GLSME 859
            N     +  + F           +    + +    + LSN          N+      E
Sbjct: 411 YNEIGS-VDGKNFDPL--------DPTPFKGINVSSINLSN----------NQISKFPKE 451

Query: 860 LAKILTIFTSIDVSNNQFEG-------EIPEMLGDFDALLVLNMSNNNFKGQIPATL--G 910
           L    +  +SI++  N           +  E   +   L  +++  N     +       
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRAT 510

Query: 911 NLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNL------LVGEIPR 955
            L  L  +DLS+N  S   P +    + L    +           + E P 
Sbjct: 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (351), Expect = 4e-34
 Identities = 58/354 (16%), Positives = 108/354 (30%), Gaps = 35/354 (9%)

Query: 88  ISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGH 147
           IS   +       +     +++Q + +  N+L + P  +   ++  L  L   Y+   G 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 148 IPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPI 207
           +P    S   L SL+L+ + +                    +E L      +        
Sbjct: 346 LP-AFGSEIKLASLNLAYNQITEIP-------ANFCGFTEQVENLSFAHNKLKYIPNIFD 397

Query: 208 LSILSNLRILSL-------PDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFS 260
              +S +  +          D     P+  +  K   ++ +NL  N +S    +  +  S
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 261 SLQYLHLS-------LCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSS--QLK 311
            L  ++L                 E       L  +D+  N  LT    +F  ++   L 
Sbjct: 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLV 516

Query: 312 VIELSETRFSGKLPDSINNLALLEDLELSDC------NFFGSIPSSFGNLTELINIDFSR 365
            I+LS   FS   P    N + L+   + +             P        L  +    
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 366 NNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGI 419
           N+          +  V+ +    N     I LSY    I   +  L  +  Q I
Sbjct: 576 NDIRKVNEKITPNISVLDI--KDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 1e-19
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 19/253 (7%)

Query: 715 IGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNG----SFPFWLETLPQLR 770
           + +   +  L L     +G +P ++ + T LEVL +G +          P  +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 771 VLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES 830
                  +Y  +  D      F+ L    I+S+    ++     +S R   K T+  Q S
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK----KSSRITLKDTQIGQLS 192

Query: 831 QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA 890
             + FV   +  L       + N     E   I   + + +    Q          +   
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL--------SGKIPEKLATLNFLSVL 942
           L  + + N     ++P  L  L E+  ++++ N+           +          + ++
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 943 KLSQN-LLVGEIP 954
            +  N L    + 
Sbjct: 311 YIGYNNLKTFPVE 323

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  231 bits (591), Expect = 1e-63
 Identities = 106/620 (17%), Positives = 200/620 (32%), Gaps = 69/620 (11%)

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV 276
            +             L     +T L+L G      VPD +   + L+ L           
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQ----LKVIELSETRFSGKLPDSINNLA 332
                   +    +   +         F    Q      +++ +  R     P   ++  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 333 LLEDLELSDC-NFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSF 391
            L+D ++ +  N    I  +   LT+L  I F+ + F+    +    +        +   
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED----ANSDYAKQ 479

Query: 392 TGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNAS 451
                LS+   L  L  ++L N      +P  LY    ++SL +  N+     +   + +
Sbjct: 480 YENEELSWS-NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 452 SL--------SLREMDFSQNKLQGLVPE-SIFQIKGLNVLRLSSNKFSGFITLEMFKDLR 502
            L         ++      N L+      S+ ++  L +L    NK      LE F    
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNV 595

Query: 503 QLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN--FLRNQTNLFHLDLSNN 560
           +L  L+L  N     +         ++  L  S  K+   PN    ++   +  +D S N
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 561 RIKGEIPNWTWNVGDGK---LVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSF 617
           +I  E  N + ++ D K      + LS+N ++ F       T + ++ + L +N++    
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMTS-- 711

Query: 618 PIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP--LSLCNAFDLQV 675
            IP  S+                N  N         L  N L+  +           L  
Sbjct: 712 -IPENSL-----------KPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSN 757

Query: 676 LDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSL 735
           +D+S N  + S P+  ++S+ LK   +R+                    D   N +    
Sbjct: 758 MDVSYNCFS-SFPTQPLNSSQLKAFGIRHQ------------------RDAEGNRILRQW 798

Query: 736 PKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALL 795
           P  ++ C SL  L +G N +       L   PQL +L +  N        +      A +
Sbjct: 799 PTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 796 QIIDISSNNFSGNLPARWFQ 815
            ++            A   +
Sbjct: 856 YVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  231 bits (591), Expect = 2e-63
 Identities = 99/709 (13%), Positives = 203/709 (28%), Gaps = 134/709 (18%)

Query: 40  LLEFKRGLSFDPQ------TDSTNKLLSWSSTTDCCSWDGVTCD--PRTGHVIGLDISSS 91
           L      L            ++T   L+W+   +   W           G V GL ++  
Sbjct: 274 LKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333

Query: 92  FITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLE 151
              G +    ++  L  L+ L+   +S   S    G + L         +     +  + 
Sbjct: 334 GAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391

Query: 152 ISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSIL 211
           +   + L   DL    +    +++   ++K   +  +L++  +G +          +  L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMK--PIKKD--SRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 212 SNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG 271
           + L+I+   +        +  +        N D            +N   L  + L  C 
Sbjct: 448 TKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 272 LYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNL 331
              ++P+ ++ +P L  L+++ N     +       +              +L D  +  
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACN-RGISAAQLKADWT--------------RLADDEDTG 547

Query: 332 ALLEDLELSDCNFFGSIPSS--FGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHN 389
             ++   +   N     P+S     + +L  +D   N     L +F              
Sbjct: 548 PKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFG------------- 592

Query: 390 SFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQN 449
                         + L  L L  N ++ I          +E L    NK       F  
Sbjct: 593 ------------TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640

Query: 450 ASSLSLREMDFSQNKLQGLVPE-----SIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQL 504
            S   +  +DFS NK+             ++    + + LS N+   F T E+F     +
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPI 699

Query: 505 GTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG 564
            T+ LS N  +                  +    +       +N   L  +DL  N++  
Sbjct: 700 STIILSNNLMT-----------------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741

Query: 565 EIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASI 624
            + +         L ++++S+N   +F     N +   L    +                
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ--LKAFGIRHQRD----------- 788

Query: 625 IFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT 684
                                           N +    P  +     L  L +  N + 
Sbjct: 789 -----------------------------AEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 685 GSIPSCLVSSNILKVLKLRNNEFL-GTVPQVIGN-ECSLRTLDLSQNHL 731
             +   L     L +L + +N  +   V  V    E  +  L   +   
Sbjct: 820 -KVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (490), Expect = 1e-50
 Identities = 94/669 (14%), Positives = 194/669 (28%), Gaps = 150/669 (22%)

Query: 327 SINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKF 386
            ++N   +  L L+     G +P + G LTEL  + F  ++ + S   F        +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 387 -AHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLE 445
              +         + D    L + DL  +++           + I+              
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI-----NRNPEMKPIKKDSR---------- 422

Query: 446 KFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLG 505
                 SL   ++    N++  +  ++I ++  L ++  +++ F+               
Sbjct: 423 -----ISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAV------DWE 470

Query: 506 TLELSENNFSFNVSGSNSNMFPKIGTLKLSSC-KITEFPNFLRNQTNLFHLDLSNNRIKG 564
                      N   S SN+   +  ++L +C  +T+ P+FL +   L  L+++ NR   
Sbjct: 471 DANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 565 EIPNWTWNVGD--------GKLVHLNLSHNMLEAFEKPGP--NLTSTVLAVLDLHSNMLQ 614
                  +            K+    + +N LE F        +    L +LD   N ++
Sbjct: 530 -AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK--LGLLDCVHNKVR 586

Query: 615 GSFPIPP----ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP--LSLC 668
               +        +  L    N+    IP +   + +       + N L   IP   +  
Sbjct: 587 H---LEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641

Query: 669 NAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQ 728
           + + +  +D S N +     +   S +  K +                   +  T+ LS 
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI-------------------NASTVTLSY 682

Query: 729 NHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQT 788
           N +     +  +  + +  + +  N +  S P                            
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYL------------ 729

Query: 789 ANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDS 848
                 L  ID+  N  +  L   +  +                       L  L     
Sbjct: 730 ------LTTIDLRFNKLTS-LSDDFRAT----------------------TLPYL----- 755

Query: 849 VTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLN------MSNNNFK 902
                              +++DVS N F    P    +   L             N   
Sbjct: 756 -------------------SNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 903 GQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN-LLVGEIPRGPQFAT 961
            Q P  +     L  L +  N +  K+ EKL     L +L ++ N  +  ++     +  
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIE 852

Query: 962 FTAASFEGN 970
                   +
Sbjct: 853 AGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (398), Expect = 2e-39
 Identities = 69/500 (13%), Positives = 135/500 (27%), Gaps = 107/500 (21%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSP------------------FPSGFDRLFSLTHLNLSY 141
           S ++  L +LQ +  A++                            +  L  LT + L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 142 SGFSGHIPLEISSLKMLVSLDLSASGL--VAPIQLRRANLEKLVKNLTNLEELYLGGIDI 199
                 +P  +  L  L SL+++ +     A ++     L         ++  Y+G  ++
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 200 SGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNF 259
                   L  +  L +L      V      +      LT L LD N +     DF    
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 260 SSLQYLHLSLCGLYGRVPEKIFL--MPSLCFLDVSSNSNLTGSLPEFPPS------SQLK 311
             ++ L  S   L   +P       +  +  +D S N  +         S          
Sbjct: 619 DQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINAS 676

Query: 312 VIELSETRFSGKLPDSINNLALLEDLELSDCNF-------FGSIPSSFGNLTELINIDFS 364
            + LS         +     + +  + LS+                ++ N   L  ID  
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 365 RNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSL 424
            N  +     F ++                        L  L  +D+  N      P   
Sbjct: 737 FNKLTSLSDDFRATT-----------------------LPYLSNMDVSYNCFSS-FPTQP 772

Query: 425 YTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRL 484
                +++  +   +                   D   N++    P  I     L  L++
Sbjct: 773 LNSSQLKAFGIRHQR-------------------DAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 485 SSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN 544
            SN     +  ++   L     L++++N                       S  +T    
Sbjct: 814 GSNDIRK-VDEKLTPQLY---ILDIADN--------------------PNISIDVTSVCP 849

Query: 545 FLRNQTNLFHLDLSNNRIKG 564
           ++     +   D     I+G
Sbjct: 850 YIEAGMYVLLYD-KTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  149 bits (378), Expect = 6e-37
 Identities = 65/499 (13%), Positives = 151/499 (30%), Gaps = 72/499 (14%)

Query: 509 LSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIP 567
           L   N+ +     N+ +               + P   L N   +  L L+    KG +P
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340

Query: 568 NWTWNVGD-GKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPI---PPAS 623
           +    +G   +L  L+   +      +   +   T     +    +      +       
Sbjct: 341 D---AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 624 IIFLDYSENKFTTN---IPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSD 680
           +   D  ++    N    P    + I+          N    I  ++     LQ++  ++
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 681 NHLTGSIPSCLVSSNI-------------------LKVLKLRNNEFLGTVPQVIGNECSL 721
           +  T    +                          L  ++L N   +  +P  + +   L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 722 RTLDLSQNHLAG---------SLPKSLSKCTSLEVLDVGKNQLNG-SFPFWLETLPQLRV 771
           ++L+++ N              L         +++  +G N L        L+ + +L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 772 LVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK--------- 822
           L    N     ++  +       L  + +  N     +P  +      ++          
Sbjct: 578 LDCVHNK----VRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 823 ---RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEG 879
                  ++   ++  V    + +         N   SM+  K +   +++ +S N+ + 
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKI----GSEGRNISCSMDDYKGINA-STVTLSYNEIQK 687

Query: 880 EIPEMLGDFDALLVLNMSNNNFK-------GQIPATLGNLKELGSLDLSHNQLSGKIPEK 932
              E+      +  + +SNN                  N   L ++DL  N+L+  + + 
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDD 746

Query: 933 LA--TLNFLSVLKLSQNLL 949
               TL +LS + +S N  
Sbjct: 747 FRATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 4e-19
 Identities = 39/306 (12%), Positives = 92/306 (30%), Gaps = 33/306 (10%)

Query: 674 QVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS-LRTLDLSQNHLA 732
           + LD  +        +  + S      K  +    G  P V  +    +  L L+     
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDM--WGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 733 GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAF 792
           G +P ++ + T L+VL  G +    S   + +      +   + +      K     +  
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM-FLDYD 395

Query: 793 ALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKE---------SQESQILKFVYLELSNL 843
             L + D+  +  + N   +  +    +  +  +              I +   L++   
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 844 YYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKG 903
                    +   + +   +       +    +          +   L  + + N     
Sbjct: 456 AN-------SP-FTYDNIAVDW--EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 904 QIPATLGNLKELGSLDLSHNQLSG---------KIPEKLATLNFLSVLKLSQNLLVGEIP 954
           Q+P  L +L EL SL+++ N+            ++ +   T   + +  +  N L  E P
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564

Query: 955 RGPQFA 960
                 
Sbjct: 565 ASASLQ 570

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  209 bits (534), Expect = 1e-60
 Identities = 81/330 (24%), Positives = 132/330 (40%), Gaps = 54/330 (16%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGS--IPSCLVSSNILKVLKLRN-NEFLG 709
              +    G +  +    + +  LDLS  +L     IPS L +   L  L +   N  +G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 710 TVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQL 769
            +P  I     L  L ++  +++G++P  LS+  +L  LD   N L+G+ P  + +LP L
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 770 RVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQE 829
             +    N   G+I D    +   L   + IS N  +G +P                   
Sbjct: 152 VGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKIPP------------------ 192

Query: 830 SQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFD 889
                      +NL                          +D+S N  EG+   + G   
Sbjct: 193 ---------TFANLN----------------------LAFVDLSRNMLEGDASVLFGSDK 221

Query: 890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
               ++++ N+    +   +G  K L  LDL +N++ G +P+ L  L FL  L +S N L
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 950 VGEIPRGPQFATFTAASFEGNAGLCGFPLP 979
            GEIP+G     F  +++  N  LCG PLP
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 5e-52
 Identities = 88/374 (23%), Positives = 137/374 (36%), Gaps = 71/374 (18%)

Query: 31  RCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCC--SWDGVTCDPRT--GHVIGL 86
            C    K  LL+ K+ L           L SW  TTDCC  +W GV CD  T    V  L
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTT------LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNL 55

Query: 87  DISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSG 146
           D+S   +       SSL +L  L  L +   +    P P    +L  L +L ++++  SG
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

Query: 147 HIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGP 206
            IP  +S                                +  L  L      +SG     
Sbjct: 116 AIPDFLS-------------------------------QIKTLVTLDFSYNALSG----- 139

Query: 207 ILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSL-QYL 265
                                +  S+S L  L  +  DGN +S  +PD   +FS L   +
Sbjct: 140 --------------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP-EFPPSSQLKVIELSETRFSGKL 324
            +S   L G++P     + +L F+D+S N  L G     F      + I L++   +  L
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237

Query: 325 PDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISL 384
              +     L  L+L +   +G++P     L  L +++ S NN  G +P   +  +    
Sbjct: 238 G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 385 KFAHNSFTGTIPLS 398
            +A+N      PL 
Sbjct: 297 AYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  180 bits (458), Expect = 2e-50
 Identities = 68/278 (24%), Positives = 123/278 (44%), Gaps = 11/278 (3%)

Query: 241 LNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGR--VPEKIFLMPSLCFLDVSSNSNLT 298
            +         + D  T    +  L LS   L     +P  +  +P L FL +   +NL 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 299 GSLP-EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTE 357
           G +P      +QL  + ++ T  SG +PD ++ +  L  L+ S     G++P S  +L  
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 358 LINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNS 415
           L+ I F  N  SG++P    + S    S+  + N  TG IP ++ +  ++L  +DL  N 
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNM 208

Query: 416 LQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQ 475
           L+G       + ++ + + L +N     L K   +   +L  +D   N++ G +P+ + Q
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQ 266

Query: 476 IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           +K L+ L +S N   G I      +L++      + N 
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (394), Expect = 5e-42
 Identities = 74/340 (21%), Positives = 129/340 (37%), Gaps = 63/340 (18%)

Query: 447 FQNASSLS--LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITL-EMFKDLRQ 503
             N ++LS  L   D       G++ ++  Q   +N L LS         +     +L  
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK 563
           L  L +   N   N+ G                      P  +   T L +L +++  + 
Sbjct: 78  LNFLYIGGIN---NLVGP--------------------IPPAIAKLTQLHYLYITHTNVS 114

Query: 564 GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA- 622
           G IP++             LS             + +  L  LD   N L G+  +PP+ 
Sbjct: 115 GAIPDF-------------LS------------QIKT--LVTLDFSYNALSGT--LPPSI 145

Query: 623 ----SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDL 678
               +++ + +  N+ +  IP + G++       +++ N L+G IP +  N  +L  +DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDL 204

Query: 679 SDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS 738
           S N L G       S    + + L  N     + + +G   +L  LDL  N + G+LP+ 
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 739 LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           L++   L  L+V  N L G  P     L +  V    +N 
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (374), Expect = 3e-39
 Identities = 81/359 (22%), Positives = 128/359 (35%), Gaps = 84/359 (23%)

Query: 315 LSETRFSGKLPDSINNLALLEDLELSDCNFFGS--IPSSFGNLTELINIDFS-RNNFSGS 371
                + G L D+      + +L+LS  N      IPSS  NL  L  +     NN  G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 372 LP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
           +P + A   ++  L   H + +G IP     Q+ +L  LD   N+L G +P S+ +  ++
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNL 151

Query: 431 ESLLLGQNKFHGQL-EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKF 489
             +    N+  G + + + + S L    M  S+N+L G +P +   +  L  + LS N  
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKL-FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 490 SGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQ 549
            G  ++      +    + L++N+ +F+          K+G  K                
Sbjct: 210 EGDASVLFGS-DKNTQKIHLAKNSLAFD--------LGKVGLSK---------------- 244

Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
            NL  LDL NNRI G +P     +    L  LN+S N L                     
Sbjct: 245 -NLNGLDLRNNRIYGTLPQGLTQLK--FLHSLNVSFNNLC-------------------- 281

Query: 610 SNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLC 668
                G  P                        GN        + A+N    G PL  C
Sbjct: 282 -----GEIP----------------------QGGNLQR-FDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 4e-14
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQ--IPATLGNLKELGSLDLSH-NQ 924
            + D  N  + G + +       +  L++S  N      IP++L NL  L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 925 LSGKIPEKLATLNFLSVLKLSQNLLVGEIP 954
           L G IP  +A L  L  L ++   + G IP
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (555), Expect = 1e-60
 Identities = 96/558 (17%), Positives = 179/558 (32%), Gaps = 48/558 (8%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNL 297
             +++L  N L        +NFS LQ+L LS C +     +    +  L  L ++ N   
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 298 TGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG-SIPSSFGNLT 356
           + S   F   + L+ +   ET+ +      I  L  L+ L ++        +P+ F NLT
Sbjct: 94  SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153

Query: 357 ELINIDFSRNNFSGSLPS-----FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
            L+++D S N       +       +    +SL  + N        +   Q I L  L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA--FQGIKLHELTL 211

Query: 412 RNNSLQGIIPKSLYTK-QSIESLLLGQNKFHG-------QLEKFQNASSLSLREMDFSQN 463
           R N     I K+       +    L   +F         +    +    +++ E   +  
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 464 KLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNS 523
                       +  ++ + L+         LE      +  +L +         +    
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFPTLD-- 326

Query: 524 NMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL 583
              P + +L L+  K +     +    +L +LDLS N +         ++G   L HL+L
Sbjct: 327 --LPFLKSLTLTMNKGSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 584 SHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIG 643
           S N           L    L  LD                        +       ++  
Sbjct: 384 SFNGAIIMSANFMGLEE--LQHLDF---------------------QHSTLKRVTEFSAF 420

Query: 644 NYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-LKVLKL 702
             +   ++  ++  N              L  L ++ N    +  S + ++   L  L L
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW 762
              +       V      L+ L++S N+L        ++  SL  LD   N++  S    
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 763 LETLPQLRVLVLQSNNYD 780
                 L    L +N+  
Sbjct: 541 QHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (511), Expect = 1e-54
 Identities = 107/551 (19%), Positives = 187/551 (33%), Gaps = 46/551 (8%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGL 168
            ++++L+ N L        F     L  L+LS              L  L +L L+ + +
Sbjct: 34  TKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 169 VAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAG-P 227
            +               LT+LE L      ++  +  PI   L  L+ L++    +    
Sbjct: 93  QSFS-------PGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCK 144

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFS----SLQYLHLSLCGLYGRVPEKIFLM 283
           + +  S L  L H++L  N + +   + L            L +SL  +   + ++ F  
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQG 203

Query: 284 PSLCFLDVSSNSNLTGSLPEFPPS-SQLKVIELSETRFSGKLPDSINNLALLE------- 335
             L  L +  N N +  +     + + L V  L    F  +    I   +++E       
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 336 -DLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGT 394
            +  L+  N F      F  L  +  +  +  +    L       K  SL          
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 395 IPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSL 453
             L     L  L+ L L  N       K      S+  L L +N         + +  + 
Sbjct: 323 PTLD----LPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           SLR +D S N    ++  +   ++ L  L    +          F  L +L  L++S  N
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEF--PNFLRNQTNLFHLDLSNNRIKGEIPNWTW 571
              +  G    +   + TLK++     +    N   N TNL  LDLS  +++        
Sbjct: 436 TKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

Query: 572 NVGDGKLVHLNLSHNMLEAF-EKPGPNLTSTVLAVLDLHSNMLQ----GSFPIPPASIIF 626
            +   +L  LN+SHN L          L S  L+ LD   N ++         P  S+ F
Sbjct: 495 TL--HRLQLLNMSHNNLLFLDSSHYNQLYS--LSTLDCSFNRIETSKGILQHFPK-SLAF 549

Query: 627 LDYSENKFTTN 637
            + + N     
Sbjct: 550 FNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  193 bits (492), Expect = 3e-52
 Identities = 114/621 (18%), Positives = 188/621 (30%), Gaps = 82/621 (13%)

Query: 346 GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLIS 405
           GS+      +  +          S  +P    S+   ++  + N        S+ +    
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIPSS-TKNIDLSFNPLKILKSYSFSN-FSE 57

Query: 406 LQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK-FQNASSLSLREMDFSQNK 464
           LQ LDL    ++ I  K+ +    + +L+L  N         F   +SL    +   + K
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL--ENLVAVETK 115

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSN 524
           L  L    I Q+  L  L ++ N          F +L  L  ++LS N            
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY----------- 164

Query: 525 MFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLS 584
                    + +  + +      N      LD+S N I          +   KL  L L 
Sbjct: 165 ---------IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI---KLHELTLR 212

Query: 585 HNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPI-----------PPASIIFLDYSENK 633
            N   +            L V  L     +    +              +I     +   
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 634 FTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS 693
             ++         N     SLA  ++       +   F  Q L +    L       L  
Sbjct: 273 DFSDDIVKFHCLAN-VSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329

Query: 694 SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLS--KCTSLEVLDVG 751
              LK L L  N   G++        SL  LDLS+N L+ S   S S     SL  LD+ 
Sbjct: 330 ---LKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPA 811
            N            L +L+ L  Q +      + +   +    L  +DIS  N       
Sbjct: 385 FNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTK-IDFD 441

Query: 812 RWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTS-- 869
             F     +                 L+++           N      L+ +    T+  
Sbjct: 442 GIFLGLTSLN---------------TLKMAG----------NSFKDNTLSNVFANTTNLT 476

Query: 870 -IDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK 928
            +D+S  Q E     +      L +LNMS+NN      +    L  L +LD S N++   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 929 IPEKLATLNFLSVLKLSQNLL 949
                     L+   L+ N +
Sbjct: 537 KGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  189 bits (481), Expect = 8e-51
 Identities = 117/653 (17%), Positives = 191/653 (29%), Gaps = 132/653 (20%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
            +  L+  +P+  PSS  K I+LS          S +N + L+ L+LS C        ++
Sbjct: 19  MDQKLS-KVPDDIPSS-TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 353 GNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
             L  L N+  + N      P SF+    + +L               G QLI+L+ L++
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNV 135

Query: 412 RNNSLQGI-IPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSL--SLREMDFSQNKLQG 467
            +N +    +P       ++  + L  N      +   Q           +D S N +  
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 468 LVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFS--FNVSGSNSNM 525
           +  +  FQ   L+ L L  N  S  I     ++L  L    L    F    N+     ++
Sbjct: 196 I-QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 526 FP-----KIGTLKLSSCKITE-FPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
                   I   +L+                N+  + L+   IK  + +        K  
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVP---KHFKWQ 310

Query: 580 HLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIP 639
            L++    L+ F  P  +L    L  L L  N    SF                      
Sbjct: 311 SLSIIRCQLKQF--PTLDLPF--LKSLTLTMNKGSISFK--------------------- 345

Query: 640 YNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI--L 697
                        +L S                L  LDLS N L+ S            L
Sbjct: 346 -----------KVALPS----------------LSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 698 KVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCTSLEVLDVGKNQLN 756
           + L L  N     +         L+ LD   + L      S       L  LD+      
Sbjct: 379 RHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 757 GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL---LQIIDISSNNFSGNLPARW 813
             F      L  L  L +  N+     KD   +N FA    L  +D+S       +    
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNS----FKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGV 492

Query: 814 FQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVS 873
           F +                       L  L                          +++S
Sbjct: 493 FDT-----------------------LHRL------------------------QLLNMS 505

Query: 874 NNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926
           +N              +L  L+ S N  +          K L   +L++N ++
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  161 bits (410), Expect = 9e-42
 Identities = 91/490 (18%), Positives = 172/490 (35%), Gaps = 43/490 (8%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L    + +    +    +  L  L+ LN+A N ++S   P+ F  L +L H++LSY+   
Sbjct: 109 LVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 146 GHIPLEISSLKML----VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISG 201
                ++  L+      +SLD+S + +          ++        L EL L G   S 
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPI--------DFIQDQAFQGIKLHELTLRGNFNSS 218

Query: 202 ADWGPILSILSNLRILSLPDCHVAG------PIHSSLSKLQLLT--HLNLDGNDLSSEVP 253
                 L  L+ L +  L                S +  L  +T     L   +  S+  
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 254 DFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPS--SQLK 311
                 +++  + L+  G+  +  E +        L +         L +FP      LK
Sbjct: 279 VKFHCLANVSAMSLA--GVSIKYLEDVPKHFKWQSLSIIRC-----QLKQFPTLDLPFLK 331

Query: 312 VIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNL--TELINIDFSRNNFS 369
            + L+  + S  +      L  L  L+LS      S   S+ +L    L ++D S N   
Sbjct: 332 SLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

Query: 370 GSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQS 429
               +F    ++  L F H++       S    L  L  LD+   + +           S
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 430 IESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKF 489
           + +L +  N F         A++ +L  +D S+ +L+ +       +  L +L +S N  
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 490 SGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSS------CKITEFP 543
               +   +  L  L TL+ S N    +           +    L++      C+  +F 
Sbjct: 510 LFLDS-SHYNQLYSLSTLDCSFNRIETSKGILQHFP-KSLAFFNLTNNSVACICEHQKFL 567

Query: 544 NFLRNQTNLF 553
            +++ Q    
Sbjct: 568 QWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (368), Expect = 2e-36
 Identities = 90/518 (17%), Positives = 152/518 (29%), Gaps = 87/518 (16%)

Query: 459 DFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNV 518
                KL   VP+ I        + LS N     +    F +  +L  L+LS        
Sbjct: 17  QCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 519 SGSNSNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGK 577
             +   +   +  L L+   I  F P      T+L +L     ++          +    
Sbjct: 73  DKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI--T 129

Query: 578 LVHLNLSHNMLEAFEKPG--PNLTSTVLAVLDLHSNMLQG-------SFPIPPASIIFLD 628
           L  LN++HN + + + P    NLT+  L  +DL  N +Q             P   + LD
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 629 YSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF-DLQVLDLSDNHLTGSI 687
            S N     I       I      +L  N  S  I  +       L V  L         
Sbjct: 188 MSLNPIDF-IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 688 PSCLVSSNILKVLK--------LRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL 739
              +   +I++ L         L                 ++  + L+   +     + +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDV 303

Query: 740 SKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIID 799
            K    + L + + QL   FP     LP L+ L L  N        +    A   L  +D
Sbjct: 304 PKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNK----GSISFKKVALPSLSYLD 356

Query: 800 ISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSME 859
           +S N  S                       S    +  L  ++L                
Sbjct: 357 LSRNALS----------------------FSGCCSYSDLGTNSL---------------- 378

Query: 860 LAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA-TLGNLKELGSL 918
                     +D+S N     +       + L  L+  ++  K         +L++L  L
Sbjct: 379 --------RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 919 DLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
           D+S+             L  L+ LK++ N         
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.6 bits (241), Expect = 1e-20
 Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 21/264 (7%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+S + ++     S S      L+HL+L+ N        + F  L  L HL+  +S   
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLK 412

Query: 146 GHIPLE-ISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADW 204
                    SL+ L+ LD+S +         + + + +   LT+L  L + G        
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNT-------KIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
             + +  +NL  L L  C +          L  L  LN+  N+L            SL  
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 265 LHLSLCGLYGRVPEKIF-LMPSLCFLDVSSNSNLT-----GSLPEFPPSSQLKVIELSET 318
           L  S   +       +     SL F ++++N ++          ++    +  ++ + + 
Sbjct: 526 LDCSFNRIET-SKGILQHFPKSLAFFNLTNN-SVACICEHQKFLQWVKEQKQFLVNVEQM 583

Query: 319 RFSGKLPDSINNLALLEDLELSDC 342
             +   P  +N   +L D   S C
Sbjct: 584 TCAT--PVEMNTSLVL-DFNNSTC 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  214 bits (546), Expect = 2e-59
 Identities = 109/620 (17%), Positives = 200/620 (32%), Gaps = 83/620 (13%)

Query: 172 IQLRRANLEKLVKNL-TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS 230
                  L ++   L  + E L      +         S L NL  L L  C +      
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 231 SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLD 290
           +      L  L L  N L       L+   +L++L     G+       +    +L  L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 291 VSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELS-DCNFFGSIP 349
           + SN   +  LP+  P+ +LKV++           + +++L    +L L+ + N    I 
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 350 SSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK---FAHNSFTGTIPLS-YGDQLIS 405
               +     +++F        +     ++ + SL    F         P    G   +S
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 406 LQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKL 465
           ++ ++L+ +    I   + +    ++ L L               S+L  +++  S NK 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL--KKLVLSANKF 313

Query: 466 QGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNM 525
           + L   S      L  L +  N     +     ++L  L  L+LS ++            
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET--------- 364

Query: 526 FPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH 585
                               LRN ++L  L+LS N                +L  L+L+ 
Sbjct: 365 -------------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP--QLELLDLAF 409

Query: 586 NMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNY 645
             L+  +   P     +L VL+L  ++L                                
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLD------------------------------I 439

Query: 646 INYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC---LVSSNILKVLKL 702
            +  +F  L +                LQ L+L  NH           L +   L++L L
Sbjct: 440 SSEQLFDGLPA----------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW 762
              +          +   +  +DLS N L  S  ++LS    +  L++  N ++   P  
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 763 LETLPQLRVLVLQSNNYDGS 782
           L  L Q R + L+ N  D +
Sbjct: 543 LPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (539), Expect = 2e-58
 Identities = 104/544 (19%), Positives = 204/544 (37%), Gaps = 32/544 (5%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L+ S + +      +++   L  L  L+L    +Y       F     L  L L+ +   
Sbjct: 38  LEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLI 94

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
                 +S  K L  L    +G+ +            + N   LE LYLG   IS     
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSID-------FIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLS-SEVPDFLTNFSSLQY 264
                   L++L   +  +       +S LQ  T+L+L+ N    + +     + +  Q 
Sbjct: 148 KGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 265 LHLSLCGLYGRVPEKIFL--MPSLCFLDVSSNS--NLTGSLPEFPPSSQLKVIELSETRF 320
           L+         + + +    + SL           +++ ++ E      ++ I L +  F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 321 SGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSN 379
                ++ +  + L++L+L+       +PS    L+ L  +  S N F      S ++  
Sbjct: 267 FNISSNTFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 380 KVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGI--IPKSLYTKQSIESLLLGQ 437
            +  L    N+    +     + L +L+ LDL ++ ++        L     ++SL L  
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 438 NKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITL 495
           N+    + E F+      L  +D +  +L+    +S FQ +  L VL LS +        
Sbjct: 386 NEPLSLKTEAFKECP--QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE- 442

Query: 496 EMFKDLRQLGTLELSENNFSFNVSGSNSN--MFPKIGTLKLSSCKITEFP-NFLRNQTNL 552
           ++F  L  L  L L  N+F        ++     ++  L LS C ++    +   +   +
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502

Query: 553 FHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNM 612
            H+DLS+NR+         ++   K ++LNL+ N +     P      +    ++L  N 
Sbjct: 503 NHVDLSHNRLTSSSIEALSHL---KGIYLNLASNHISIIL-PSLLPILSQQRTINLRQNP 558

Query: 613 LQGS 616
           L  +
Sbjct: 559 LDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (527), Expect = 7e-57
 Identities = 113/606 (18%), Positives = 201/606 (33%), Gaps = 72/606 (11%)

Query: 136 HLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLG 195
             N    G +  IP  + +      L+ S + L     ++          L NL  L L 
Sbjct: 16  TYNCENLGLN-EIPGTLPNS--TECLEFSFNVLP---TIQNTTF----SRLINLTFLDLT 65

Query: 196 GIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDF 255
              I              L  L L    +     ++LS  + L HL      +SS     
Sbjct: 66  RCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 256 LTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIEL 315
           L N  +L+ L+L                         SN   +  LP+  P+ +LKV++ 
Sbjct: 125 LHNQKTLESLYL------------------------GSNHISSIKLPKGFPTEKLKVLDF 160

Query: 316 SETRFSGKLPDSINNLALLEDLELS-DCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS 374
                     + +++L    +L L+ + N    I     +     +++F        +  
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 375 FASSNKVISLK---FAHNSFTGTIPLS-YGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
              ++ + SL    F         P    G   +S++ ++L+ +    I   + +    +
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 431 ESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
           + L L               S  +L+++  S NK + L   S      L  L +  N   
Sbjct: 281 QELDLTATHLSELPSGLVGLS--TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 491 GFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMF---PKIGTLKLSSCKITEF-PNFL 546
             +     ++L  L  L+LS ++     S   +        + +L LS  +         
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396

Query: 547 RNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPG-PNLTSTVLAV 605
           +    L  LDL+  R+K +     +      L  LNLSH++L+   +     L +  L  
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPA--LQH 453

Query: 606 LDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPL 665
           L+L  N           S+  L   E                      L+  +LS     
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLE-------------------ILVLSFCDLSSIDQH 494

Query: 666 SLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLD 725
           +  +   +  +DLS N LT S    L     +  L L +N     +P ++      RT++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553

Query: 726 LSQNHL 731
           L QN L
Sbjct: 554 LRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  204 bits (521), Expect = 4e-56
 Identities = 99/542 (18%), Positives = 181/542 (33%), Gaps = 31/542 (5%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGL 168
            + L  + N L +    + F RL +LT L+L+             S   L +L L+A+ L
Sbjct: 35  TECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 169 VAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPI 228
           +          E  +     L+ L+     IS  D    L     L  L L   H++   
Sbjct: 94  IFMA-------ETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIK 145

Query: 229 HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLY-GRVPEKIFLMPSLC 287
                  + L  L+   N +     + +++      L L+L G     +    F      
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 288 FLDVSSNSNLTGSLPEFPPSS--QLKVIELSETRFSGKLPDSINNLAL--LEDLELSDCN 343
            L+     NL         S+   L +    +       P     L    +E + L    
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 344 FFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQL 403
           FF    ++F   + L  +D +  + S         + +  L  + N F     +S     
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS-NF 324

Query: 404 ISLQVLDLRNNSLQG-IIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFS 461
            SL  L ++ N+ +  +    L   +++  L L  +          Q  +   L+ ++ S
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 462 QNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGS 521
            N+   L  E+  +   L +L L+  +         F++L  L  L LS +    +    
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 522 NSNMFPKIGTLKLSSCKITEF----PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGK 577
              + P +  L L      +      N L+    L  L LS   +     +   ++    
Sbjct: 445 FDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL--KM 501

Query: 578 LVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML----QGSFPIPPASIIFLDYSENK 633
           + H++LSHN L +       L+      L+L SN +        PI       ++  +N 
Sbjct: 502 MNHVDLSHNRLTSS--SIEALSHLKGIYLNLASNHISIILPSLLPILS-QQRTINLRQNP 558

Query: 634 FT 635
             
Sbjct: 559 LD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (501), Expect = 2e-53
 Identities = 107/645 (16%), Positives = 203/645 (31%), Gaps = 113/645 (17%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
            N  L   +P   P+S  + +E S          + + L  L  L+L+ C  +     +F
Sbjct: 20  ENLGLN-EIPGTLPNS-TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77

Query: 353 GNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
            +   L  +  + N        + +    +  L F     +    +       +L+ L L
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-NQKTLESLYL 136

Query: 412 RNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVP 470
            +N +  I     +  + ++ L    N  H    E   +    +   ++ + N + G+  
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI-E 195

Query: 471 ESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN-VSGSNSNMFPKI 529
              F       L     +      L +FK L+      L    F        +  +F  +
Sbjct: 196 PGAFDSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 530 GTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLE 589
             +                  ++  ++L  +       N         L  L+L+   L 
Sbjct: 252 CEM------------------SVESINLQKHYFFNISSNTFHCFS--GLQELDLTATHLS 291

Query: 590 AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYA 649
                   L++  L  L L +N  +    +   S             ++           
Sbjct: 292 ELPSGLVGLST--LKKLVLSANKFEN---LCQISASNF--------PSL----------- 327

Query: 650 VFFSLASNNLSGGI-PLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRNNE 706
              S+  N     +    L N  +L+ LDLS + +  S    L   N+  L+ L L  NE
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 707 FLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWLET 765
            L    +       L  LDL+   L     +S       L+VL++  + L+ S     + 
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 766 LPQLRVLVLQSNNYDGSIKDTQTANAFAL---LQIIDISSNNFSGNLPARWFQSWRGMKK 822
           LP L+ L LQ N++          N+      L+I+ +S  + S  +    F S      
Sbjct: 448 LPALQHLNLQGNHFPKGNIQK--TNSLQTLGRLEILVLSFCDLSS-IDQHAFTS------ 498

Query: 823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIP 882
                            L  +                          +D+S+N+      
Sbjct: 499 -----------------LKMM------------------------NHVDLSHNRLTSSSI 517

Query: 883 EMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
           E L      + LN+++N+    +P+ L  L +  +++L  N L  
Sbjct: 518 EALSHLK-GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (491), Expect = 5e-52
 Identities = 101/605 (16%), Positives = 189/605 (31%), Gaps = 92/605 (15%)

Query: 361 IDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGII 420
            +      +  +P    ++    L+F+ N        ++   LI+L  LDL    +  I 
Sbjct: 17  YNCENLGLN-EIPGTLPNS-TECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIH 73

Query: 421 PKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLN 480
             +  ++  +++L+L  N     + +   +   +L+ + F Q  +  +    +   K L 
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 481 VLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFP-KIGTLKLSSCKI 539
            L L SN  S  I L       +L  L+   N   +      S++      +L L+   I
Sbjct: 133 SLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191

Query: 540 TEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAF-EKPGPNL 598
                   +      L+    +    I     N     L          E         L
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 599 TSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNN 658
               +  ++L  +                         NI  N  +  +      L + +
Sbjct: 252 CEMSVESINLQKHYF----------------------FNISSNTFHCFSGLQELDLTATH 289

Query: 659 LSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTV-PQVIGN 717
           LS  +P  L     L+ L LS N           +   L  L ++ N     +    + N
Sbjct: 290 LSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 718 ECSLRTLDLSQNHLAGS--LPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQ 775
             +LR LDLS + +  S      L   + L+ L++  N+         +  PQL +L L 
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 776 SNNYDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
                  +K     + F    LL+++++S +        + F                  
Sbjct: 409 FTR----LKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQLFDG---------------- 447

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDF---D 889
                  L  L                          +++  N F     +         
Sbjct: 448 -------LPAL------------------------QHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
            L +L +S  +          +LK +  +DLSHN+L+    E L+ L  +  L L+ N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535

Query: 950 VGEIP 954
              +P
Sbjct: 536 SIILP 540

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  166 bits (422), Expect = 3e-43
 Identities = 98/515 (19%), Positives = 168/515 (32%), Gaps = 67/515 (13%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           S   ++FS N L  +   +  ++  L  L L+  +    I  + F+   +L TL L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANP 92

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWN 572
             F    + S     +  L      I+      L NQ  L  L L +N I        + 
Sbjct: 93  LIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 573 VGDGKLVHLNLSHNMLEAFEKPGP-NLTSTVLAVLDLHSNMLQGSFPIPPASIIF--LDY 629
               KL  L+  +N +    K    +L       L+L+ N + G  P    S +F  L++
Sbjct: 152 TE--KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 630 SENKFTTNIPYNIGN----YINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTG 685
              +    I   + N     +    F  +   ++S  +   LC    ++ ++L  ++   
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFN 268

Query: 686 SIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSL 745
              +     + L+ L L     L  +P  +    +L+ L LS N        S S   SL
Sbjct: 269 ISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 746 EVLDVGKNQLNGS-FPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNN 804
             L +  N          LE L  LR L L  ++ + S          + LQ +++S N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 805 FSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKIL 864
              +L    F+                           L                     
Sbjct: 388 PL-SLKTEAFKE-----------------------CPQL--------------------- 402

Query: 865 TIFTSIDVSNNQFEGEIPEM-LGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHN 923
                +D++  + + +  +    +   L VLN+S++            L  L  L+L  N
Sbjct: 403 ---ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 924 QLSGKI---PEKLATLNFLSVLKLSQNLLVGEIPR 955
                       L TL  L +L LS   L      
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  131 bits (332), Expect = 8e-32
 Identities = 83/498 (16%), Positives = 152/498 (30%), Gaps = 113/498 (22%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           +P ++        L  S N     I    F  L  L  L+L+     +    +  +   +
Sbjct: 27  IPGTLP--NSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HR 82

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNM 587
           + TL L++  +       L     L HL      I         N     L  L L  N 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK--TLESLYLGSNH 140

Query: 588 LEAFEKP-GPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYI 646
           + + + P G       L VLD  +N +     +    +  L  + N              
Sbjct: 141 ISSIKLPKGFPTEK--LKVLDFQNNAIHY---LSKEDMSSLQQATN-------------- 181

Query: 647 NYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRN 704
              +  +L  N+++G I     ++   Q L+         I   L +S I  L +    +
Sbjct: 182 ---LSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 705 NEFLGTVPQVIGNEC--SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW 762
            +     P V    C  S+ +++L +++       +    + L+ LD+    L+   P  
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 763 LETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK 822
           L  L                            L+ + +S+N F   L      +      
Sbjct: 297 LVGLST--------------------------LKKLVLSANKFEN-LCQISASN------ 323

Query: 823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEI- 881
                              +L                        T + +  N    E+ 
Sbjct: 324 -----------------FPSL------------------------THLSIKGNTKRLELG 342

Query: 882 PEMLGDFDALLVLNMSNNNFK--GQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFL 939
              L + + L  L++S+++ +        L NL  L SL+LS+N+      E       L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 940 SVLKLSQNLLVGEIPRGP 957
            +L L+   L  +  + P
Sbjct: 403 ELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  129 bits (327), Expect = 3e-31
 Identities = 59/335 (17%), Positives = 110/335 (32%), Gaps = 29/335 (8%)

Query: 636 TNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSN 695
             IP  + N          + N L      +     +L  LDL+   +         S +
Sbjct: 25  NEIPGTLPNSTEC---LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 696 ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
            L  L L  N  +      +    +L+ L   Q  ++      L    +LE L +G N +
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 756 NGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQ-----IIDISSNNFSG--- 807
           +           +L+VL  Q+N     I         + LQ      ++++ N+ +G   
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNA----IHYLS-KEDMSSLQQATNLSLNLNGNDIAGIEP 196

Query: 808 ------NLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELA 861
                    +  F   + +    K  + S I         ++  +D    + +GL     
Sbjct: 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC---- 252

Query: 862 KILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLS 921
                  SI++  + F          F  L  L+++  +   ++P+ L  L  L  L LS
Sbjct: 253 --EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 922 HNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
            N+         +    L+ L +  N    E+  G
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (315), Expect = 8e-30
 Identities = 68/377 (18%), Positives = 114/377 (30%), Gaps = 40/377 (10%)

Query: 605 VLDLHSNMLQGSFPIP-PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGI 663
             +  +  L    P   P S   L++S N   T         IN   F  L    +    
Sbjct: 16  TYNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINL-TFLDLTRCQIYWIH 73

Query: 664 PLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRT 723
             +  +   L  L L+ N L     + L     LK L              + N+ +L +
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 724 LDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQ-SNNYDGS 782
           L L  NH++            L+VLD   N ++      + +L Q   L L  + N    
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 783 IKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSN 842
           I+    A   A+ Q ++         +               K  + S I         +
Sbjct: 194 IEPG--AFDSAVFQSLNFGGTQNLLVIF--------------KGLKNSTIQSLWLGTFED 237

Query: 843 LYYQDSVTLMNKGLSMELAKIL------------TIF------TSIDVSNNQFEGEIPEM 884
           +  +D    + +GL     + +              F        +D++      E+P  
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296

Query: 885 LGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEK-LATLNFLSVLK 943
           L     L  L +S N F+     +  N   L  L +  N    ++    L  L  L  L 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 944 LSQNLLVGEIPRGPQFA 960
           LS + +        Q  
Sbjct: 357 LSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 2e-12
 Identities = 42/250 (16%), Positives = 75/250 (30%), Gaps = 38/250 (15%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
              +T +     L   +P +L    S E L+   N L          L  L  L L    
Sbjct: 12  EVNKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 779 YDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKF 835
                +D      F     L  + +++N     +         G K           LK 
Sbjct: 69  IYWIHED-----TFQSQHRLDTLVLTANPLIF-MAETAL---SGPKA----------LKH 109

Query: 836 VYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLN 895
           ++   + +   D + L N               S+ + +N             + L VL+
Sbjct: 110 LFFIQTGISSIDFIPLHN----------QKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 896 MSNNNFKGQIPATLGNLKELG--SLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEI 953
             NN         + +L++    SL+L+ N ++G I            L       +  I
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 954 PRGPQFATFT 963
            +G + +T  
Sbjct: 219 FKGLKNSTIQ 228

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (473), Expect = 1e-48
 Identities = 128/668 (19%), Positives = 210/668 (31%), Gaps = 109/668 (16%)

Query: 178 NLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS-SLSKLQ 236
           NL ++ + L   E L L    I           L  L++L L   +    I   +   L 
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 237 LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL--MPSLCFLDVSSN 294
            L  L+L  + +    PD       L  L L  CGL   V +  +   + +L  LD+S N
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 295 SNLTGSL-PEFPPSSQLKVIELSETRFSGKLPDSINNLAL--LEDLELSDCNFFGSIPSS 351
              +  L P F   + LK I+ S  +        +  L    L    L+  + +  +   
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 352 FGNLTELI-NIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLD 410
           +G       N+     + SG+                                 ++ +  
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNG-------------------------------WTVDITG 222

Query: 411 LRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLV 469
             +N++      SL     I     G +         F   +  S+R +D S   +  L 
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 470 PESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKI 529
                 +K L VL L+ NK +  I  E F  L  L  L LS N      S +   + PK+
Sbjct: 283 SRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-PKV 340

Query: 530 GTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNML 588
             + L    I        +    L  LDL +N +   I           +  + LS N L
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPS------IPDIFLSGNKL 393

Query: 589 EAFEKPGPNLTSTVLAVLDLHSNMLQ----GSFPIPPASIIFLDYSENKFTTNIPYNIGN 644
               K            + L  N L+      F +    +  L  ++N+F+         
Sbjct: 394 VTLPKINLTANL-----IHLSENRLENLDILYFLLRVPHLQILILNQNRFS--------- 439

Query: 645 YINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN 704
             +     S   +               L+ L L +N L  +  + L   ++ + L    
Sbjct: 440 SCSGDQTPSENPS---------------LEQLFLGENMLQLAWETEL-CWDVFEGLS--- 480

Query: 705 NEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLE 764
                           L+ L L+ N+L    P   S  T+L  L +  N+L       L 
Sbjct: 481 ---------------HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL- 524

Query: 765 TLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRT 824
               L +L +  N            + F  L ++DI+ N F        F +W      T
Sbjct: 525 -PANLEILDISRNQLL-----APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVT 578

Query: 825 KESQESQI 832
                + I
Sbjct: 579 IAGPPADI 586

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  183 bits (465), Expect = 1e-47
 Identities = 121/626 (19%), Positives = 213/626 (34%), Gaps = 45/626 (7%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L +S ++I   +  +SS   L++LQ L L       +     F  L +L  L+L  S   
Sbjct: 29  LLLSFNYIRT-VT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
              P     L  L  L L   GL   +           +NL  L  L L    I      
Sbjct: 87  FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY-----FRNLKALTRLDLSKNQIRSLYLH 141

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQL--LTHLNLDGNDLSSEVP-DFLTNFSSL 262
           P    L++L+ +      +       L  LQ   L+  +L  N L S V  D+    +  
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 263 QYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSG 322
           + + L +  L          +       +S +   +  L     +  +            
Sbjct: 202 RNMVLEI--LDVSGNGWTVDITGNFSNAISKSQAFSLIL-----AHHIMGAGFGFHNIKD 254

Query: 323 KLPDSINNLAL--LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG-SLPSFASSN 379
              ++   LA   +  L+LS    F      F  L +L  ++ + N  +  +  +F   +
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 380 KVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNK 439
            +  L  ++N     +  S    L  +  +DL+ N +  I  ++    + +++L L  N 
Sbjct: 315 NLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN- 372

Query: 440 FHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFK 499
               L         S+ ++  S NKL  L   ++      N++ LS N+      L    
Sbjct: 373 ---ALTTIHFIP--SIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLL 423

Query: 500 DLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEF------PNFLRNQTNLF 553
            +  L  L L++N FS        +  P +  L L    +          +     ++L 
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 554 HLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            L L++N +   +P   ++     L  L+L+ N L        N     L +LD+  N L
Sbjct: 484 VLYLNHNYLN-SLPPGVFS-HLTALRGLSLNSNRLTVLS---HNDLPANLEILDISRNQL 538

Query: 614 QGSFPIPPASIIFLDYSENKFTTNIPYN--IGNYINYAVFFSLASNNLSGGIPLSLCNAF 671
               P    S+  LD + NKF      +  I    +  V  +    ++    P S     
Sbjct: 539 LAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSG-V 597

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNIL 697
            L  L          + S   S  I+
Sbjct: 598 SLFSLSTEGCDEEEVLKSLKFSLFIV 623

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  155 bits (394), Expect = 7e-39
 Identities = 94/513 (18%), Positives = 172/513 (33%), Gaps = 62/513 (12%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           +   +  S N ++ +   S   ++ L +L L S      I  E F++L  L  L+L  + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWN 572
                                    I     +  +   +LF L L    +   +    + 
Sbjct: 85  -------------------------IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 573 VGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQ----GSF-PIPPASIIFL 627
                L  L+LS N + +            L  +D  SN +         P+   ++ F 
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 628 DYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSI 687
             + N   + +  + G  +N      L   ++SG       N + + +     N ++ S 
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQ 232

Query: 688 PSCLVSSNILKVLKLRNNEFLGTVPQVIGNEC--SLRTLDLSQNHLAGSLPKSLSKCTSL 745
              L+ ++ +       +                S+R LDLS   +     +       L
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 746 EVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNF 805
           +VL++  N++N         L  L+VL L S N  G +  +        +  ID+  N+ 
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNL-SYNLLGELYSS-NFYGLPKVAYIDLQKNHI 350

Query: 806 SGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLS--MELAKI 863
           +  +  + F+    +          Q L      L+ +++  S+  +    +  + L KI
Sbjct: 351 A-IIQDQTFKFLEKL----------QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399

Query: 864 LTIFTSIDVSNNQFEG-EIPEMLGDFDALLVLNMSNNNFKG-QIPATLGNLKELGSLDLS 921
                 I +S N+ E  +I   L     L +L ++ N F       T      L  L L 
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 922 HNQLSGKIPEKLATLNF-----LSVLKLSQNLL 949
            N L      +L    F     L VL L+ N L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (375), Expect = 1e-36
 Identities = 91/523 (17%), Positives = 170/523 (32%), Gaps = 59/523 (11%)

Query: 452 SLSLREMDFSQNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
           S   R   +    L       + Q +     L LS N     +T   F  L QL  LEL 
Sbjct: 3   SFDGRIAFYRFCNL-----TQVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELG 56

Query: 511 ENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNW 569
                  +        P +  L L S KI     +  +   +LF L L    +   +   
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 570 TWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQ----GSF-PIPPASI 624
            +      L  L+LS N + +            L  +D  SN +         P+   ++
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 625 IFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT 684
            F   + N   + +  + G  +N      L   ++SG       N + + +     N ++
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVDITGNFSNAIS 229

Query: 685 GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNEC--SLRTLDLSQNHLAGSLPKSLSKC 742
            S    L+ ++ +       +                S+R LDLS   +     +     
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

Query: 743 TSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISS 802
             L+VL++  N++N         L  L+VL L S N  G +  +        +  ID+  
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNL-SYNLLGELYSS-NFYGLPKVAYIDLQK 347

Query: 803 NNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAK 862
           N+ +  +  + F+    ++                L+L +          N    +    
Sbjct: 348 NHIA-IIQDQTFKFLEKLQ---------------TLDLRD----------NA---LTTIH 378

Query: 863 ILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKG-QIPATLGNLKELGSLDLS 921
            +     I +S N+    +  +        ++++S N  +   I   L  +  L  L L+
Sbjct: 379 FIPSIPDIFLSGNK----LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 922 HNQLSGKIPEKLAT-LNFLSVLKLSQNLLVGEIPRGPQFATFT 963
            N+ S    ++  +    L  L L +N+L         +  F 
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (367), Expect = 1e-35
 Identities = 105/619 (16%), Positives = 190/619 (30%), Gaps = 80/619 (12%)

Query: 336 DLELSDCNFFG--SIPSSFGNLTELINIDFSRNNFSGSLP--SFASSNKVISLKFAHNSF 391
           D  ++   F     +P        L     S N    ++   SF    ++  L+      
Sbjct: 5   DGRIAFYRFCNLTQVPQVLNTTERL---LLSFNYIR-TVTASSFPFLEQLQLLELGSQYT 60

Query: 392 TGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNAS 451
             TI       L +L++LDL ++ +  + P +      +  L L                
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG------------ 108

Query: 452 SLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE 511
              L +        + L        K L  L LS N+         F  L  L +++ S 
Sbjct: 109 ---LSDAVLKDGYFRNL--------KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 512 NNFSFNVSGSNSNM-FPKIGTLKLSSCKITEFPNF-------LRNQTNLFHLDLSNNRIK 563
           N            +    +    L++  +    +              L  LD+S N   
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217

Query: 564 GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPAS 623
            +I     N          +  + +        N+        D   N   G   +  +S
Sbjct: 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-------DPDQNTFAG---LARSS 267

Query: 624 IIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHL 683
           +  LD S      ++   +   +      +LA N ++     +     +LQVL+LS N L
Sbjct: 268 VRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 684 TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
                S       +  + L+ N       Q       L+TLDL  N L      ++    
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIP 381

Query: 744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSN 803
           S+  + +  N+L       L       ++ L  N  + ++           LQI+ ++ N
Sbjct: 382 SIPDIFLSGNKLVTLPKINL----TANLIHLSENRLE-NLDILYFLLRVPHLQILILNQN 436

Query: 804 NFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKI 863
            FS +       S                     L L     Q         L  ++ + 
Sbjct: 437 RFS-SCSGDQTPSENP--------------SLEQLFLGENMLQL---AWETELCWDVFEG 478

Query: 864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHN 923
           L+    + +++N      P +     AL  L++++N         L     L  LD+S N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRN 536

Query: 924 QLSGKIPEKLATLNFLSVL 942
           QL    P+   +L+ L + 
Sbjct: 537 QLLAPNPDVFVSLSVLDIT 555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  171 bits (435), Expect = 4e-45
 Identities = 102/547 (18%), Positives = 193/547 (35%), Gaps = 40/547 (7%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
              N    +P+  P S  K ++LS          S  +   L+ L+LS C        ++
Sbjct: 15  MELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 353 GNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLD 410
            +L+ L  +  + N    SL    F+  + +  L     +   ++       L +L+ L+
Sbjct: 73  QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130

Query: 411 LRNNSLQGI-IPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREM--DFSQNKLQ 466
           + +N +Q   +P+      ++E L L  NK         +    + L  +  D S N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSF--NVSGSNSN 524
            +     F+   L+ L L +N  S  +     + L  L    L    F    N+   + +
Sbjct: 191 FI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 525 MFPKIGTLKLSSCKITEFPNFLRNQTNLF-------HLDLSNNRIKGEIPNWTWNVGDGK 577
               +  L +   ++     +L +  +LF          L +  I+  + ++++N G   
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQH 308

Query: 578 LVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFP-IPPASIIFLDYSENKFTT 636
           L  +N             P L    L  L   SN    +F  +   S+ FLD S N  + 
Sbjct: 309 LELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 637 -NIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIP-SCLVSS 694
                          +  L+ N +   +  +      L+ LD   ++L      S  +S 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 695 NILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK-SLSKCTSLEVLDVGKN 753
             L  L + +         +     SL  L ++ N    +      ++  +L  LD+ + 
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 754 QLNGSFPFWLETLPQLRVLVLQSNNYDGSIK--DTQTANAFALLQIIDISSNNFSGNLP- 810
           QL    P    +L  L+VL + SN     +K       +    LQ I + +N +  + P 
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQ----LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

Query: 811 ARWFQSW 817
             +   W
Sbjct: 537 IDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (410), Expect = 7e-42
 Identities = 111/542 (20%), Positives = 187/542 (34%), Gaps = 48/542 (8%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+S + +     GS S F    LQ L+L+   + +      +  L  L+ L L+ +   
Sbjct: 33  LDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQ 89

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADW 204
                  S L  L  L    + L        A+LE     +L  L+EL +    I     
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNL--------ASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLT----HLNLDGNDLSSEVPDFLTNFS 260
               S L+NL  L L    +     + L  L  +      L+L  N ++  +        
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI 200

Query: 261 SLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRF 320
            L  L L        V +        C   ++        L EF     L+  + S    
Sbjct: 201 RLHKLTLRNNFDSLNVMKT-------CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 321 SGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNK 380
              L      LA L+        +   I   F  LT + +           +  F+ +  
Sbjct: 254 LCNLTIEEFRLAYLD-------YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG 305

Query: 381 VISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKF 440
              L+  +  F     L     L SL+ L   +N        S     S+E L L +N  
Sbjct: 306 WQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL 359

Query: 441 HGQ-LEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFK 499
             +      +  + SL+ +D S N +  +   +   ++ L  L    +         +F 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 500 DLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEF--PNFLRNQTNLFHLDL 557
            LR L  L++S  +     +G  + +   +  LK++     E   P+      NL  LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 558 SNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPG-PNLTSTVLAVLDLHSNMLQGS 616
           S  +++ ++    +N     L  LN++ N L++        LTS  L  + LH+N    S
Sbjct: 478 SQCQLE-QLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCS 533

Query: 617 FP 618
            P
Sbjct: 534 CP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (409), Expect = 7e-42
 Identities = 117/609 (19%), Positives = 195/609 (32%), Gaps = 110/609 (18%)

Query: 187 TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGN 246
            + + L L    +              L++L L  C +      +   L  L+ L L GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 247 DLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPP 306
            + S      +  SSLQ L      L       I  + +L  L+V+ N            
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN------------ 134

Query: 307 SSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRN 366
              ++           KLP+  +NL  LE L+LS         +    L ++        
Sbjct: 135 --LIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-------- 175

Query: 367 NFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT 426
                          +SL  + N     I      ++  L  L LRNN     + K+   
Sbjct: 176 -----------PLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQ 222

Query: 427 KQS---IESLLLGQNKFHGQLEK-----FQNASSLSLREMDFSQNKLQGLVPESIFQ-IK 477
             +   +  L+LG+ +  G LEK      +   +L++ E   +           +F  + 
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 478 GLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC 537
            ++   L S               + L  +      F              +  L  +S 
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-------LKLKSLKRLTFTSN 335

Query: 538 KITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPN 597
           K     + + +  +L  LDLS N +  +      + G   L +L+LS N +         
Sbjct: 336 KGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 598 LTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASN 657
           L    L  LD   + L+    +   S                          VF SL + 
Sbjct: 395 LEQ--LEHLDFQHSNLKQ---MSEFS--------------------------VFLSLRN- 422

Query: 658 NLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ-VIG 716
                          L  LD+S  H   +        + L+VLK+  N F       +  
Sbjct: 423 ---------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 717 NECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQS 776
              +L  LDLSQ  L    P + +  +SL+VL++  NQL        + L  L+ + L +
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 777 NNYDGSIKD 785
           N +D S   
Sbjct: 528 NPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  148 bits (376), Expect = 1e-37
 Identities = 119/595 (20%), Positives = 191/595 (32%), Gaps = 88/595 (14%)

Query: 362 DFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIP 421
                NF   +P     +   +L  + N     +          LQVLDL    +Q I  
Sbjct: 13  QCMELNFY-KIPDNLPFS-TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 422 KSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNV 481
            +  +   + +L+L  N     L     +   SL+++   +  L  L    I  +K L  
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 482 LRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSF---NVSGSNSNMFPKIGTLKLSSCK 538
           L ++ N    F   E F +L  L  L+LS N               M     +L LS   
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 539 ITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNL 598
           +         +  L  L L NN     +           L  L +   +L  F +   NL
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ----GLAGLEVHRLVLGEF-RNEGNL 243

Query: 599 TSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNN 658
                + L+   N+          +I     +   +  +   ++ N +     FSL S  
Sbjct: 244 EKFDKSALEGLCNL----------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 659 LSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNE 718
           +      S    F  Q L+L +          L S   LK L   +N+  G     +   
Sbjct: 294 IERVKDFSYN--FGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNK-GGNAFSEVDLP 347

Query: 719 CSLRTLDLSQNHLA--GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQS 776
            SL  LDLS+N L+  G   +S    TSL+ LD+  N +  +       L QL  L  Q 
Sbjct: 348 -SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 777 NNYDGSIKDTQTANAFAL---LQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQIL 833
           +N    +K     + F     L  +DIS  +         F                   
Sbjct: 406 SN----LKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNG----------------- 443

Query: 834 KFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEI-PEMLGDFDALL 892
                 LS+L                          + ++ N F+    P++  +   L 
Sbjct: 444 ------LSSL------------------------EVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
            L++S    +   P    +L  L  L+++ NQL          L  L  + L  N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (360), Expect = 1e-35
 Identities = 99/555 (17%), Positives = 164/555 (29%), Gaps = 87/555 (15%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQN 463
           S + LDL  N L+ +   S ++   ++ L L + +    +   +Q+ S L    +  + N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL--STLILTGN 86

Query: 464 KLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNS 523
            +Q L   +   +  L  L       +          L+ L  L ++ N           
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 524 NMFPKIGTLKLSSCKITEFP----NFLRN-QTNLFHLDLSNNRIKGEIPNWTWNVGDGKL 578
           +    +  L LSS KI          L         LDLS N +    P     +   +L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RL 202

Query: 579 VHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNI 638
             L L +N                L V  L     +    +       L+   N      
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE- 261

Query: 639 PYNIGNYINYAVFFSLASNNLSG-GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNIL 697
                        F LA  +     I        ++    L    +   +     +    
Sbjct: 262 -------------FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG-W 306

Query: 698 KVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN- 756
           + L+L N +F       + +   L+ L  + N    +   S     SLE LD+ +N L+ 
Sbjct: 307 QHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSF 361

Query: 757 -GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQ 815
            G           L+ L L  N       +         L+ +D   +N         F 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFL 418

Query: 816 SWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNN 875
           S                       L NL                          +D+S+ 
Sbjct: 419 S-----------------------LRNL------------------------IYLDISHT 431

Query: 876 QFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA-TLGNLKELGSLDLSHNQLSGKIPEKLA 934
                   +     +L VL M+ N+F+          L+ L  LDLS  QL    P    
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 935 TLNFLSVLKLSQNLL 949
           +L+ L VL ++ N L
Sbjct: 492 SLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 3e-28
 Identities = 82/511 (16%), Positives = 157/511 (30%), Gaps = 72/511 (14%)

Query: 459 DFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNV 518
              +      +P+++        L LS N     +    F    +L  L+LS        
Sbjct: 13  QCMELNFYK-IPDNLPF--STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 519 SGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGK 577
            G+  ++   + TL L+   I           ++L  L      +         ++    
Sbjct: 69  DGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK--T 125

Query: 578 LVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTN 637
           L  LN++HN++++F+ P      T L  LDL SN +Q    I    +  L        + 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLS- 181

Query: 638 IPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPS-CLVSSNI 696
                           L+ N ++  I         L  L L +N  + ++   C+     
Sbjct: 182 --------------LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 697 LKVLKLRNNEFLGTV------PQVIGNECSLRTLDLSQNHL---AGSLPKSLSKCTSLEV 747
           L+V +L   EF             +   C+L   +    +L      +    +  T++  
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 748 LDVGKNQLNGSFPF-WLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFS 806
             +    +     F +      L ++  +                   L+ +  +SN   
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ--------FPTLKLKSLKRLTFTSNKGG 338

Query: 807 GNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTI 866
                    S                L+F+ L  + L ++   +  + G         T 
Sbjct: 339 NAFSEVDLPS----------------LEFLDLSRNGLSFKGCCSQSDFGT--------TS 374

Query: 867 FTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA-TLGNLKELGSLDLSHNQL 925
              +D+S N     +       + L  L+  ++N K         +L+ L  LD+SH   
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 926 SGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
                     L+ L VLK++ N         
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  157 bits (398), Expect = 1e-40
 Identities = 106/552 (19%), Positives = 194/552 (35%), Gaps = 78/552 (14%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
           +  L+L  N ++      L   ++LQ L L    +   +    F  + SL  LD+S N +
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDN-H 85

Query: 297 LTGSLPE--FPPSSQLKVIELSETRFSG-KLPDSINNLALLEDLELSDCNFFGSIP-SSF 352
           L+ SL    F P S LK + L    +    +     NL  L+ L + +   F  I    F
Sbjct: 86  LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 353 GNLTELINIDFSRNNFSG-SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
             LT L  ++    +       S  S   +  L    +     +   + D L S++ L+L
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLEL 203

Query: 412 RNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPE 471
           R+ +L       L   +    +     +           +  S  E+      +  L   
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGS-------VLTDESFNELLKLLRYILELSEV 256

Query: 472 SIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGT 531
                    +   + ++      L    +   +  L + +    +++S   S    K+  
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELG-KVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKR 314

Query: 532 LKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGD-GKLVHLNLSHNMLE 589
           + + + K+   P +F ++  +L  LDLS N +  E    +   G    L  L LS N L 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 590 AFEK-PGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINY 648
           + +K     LT   L  LD+  N                          +P +       
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTF----------------------HPMPDS------- 405

Query: 649 AVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL 708
                                   ++ L+LS   +   + +C+  +  L+VL + NN  L
Sbjct: 406 --CQWPEK----------------MRFLNLSSTGIR-VVKTCIPQT--LEVLDVSNNN-L 443

Query: 709 GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQ 768
            +    +     L+ L +S+N L  +LP + S    L V+ + +NQL        + L  
Sbjct: 444 DSFSLFLPR---LQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 769 LRVLVLQSNNYD 780
           L+ + L +N +D
Sbjct: 499 LQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 8e-38
 Identities = 94/567 (16%), Positives = 182/567 (32%), Gaps = 78/567 (13%)

Query: 174 LRRANLEKLVKNL-TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSL 232
            R  +   +   L   ++ L L    I+    G  L   +NL++L L    +      + 
Sbjct: 12  GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAF 70

Query: 233 SKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDV 291
             L  L HL+L  N LSS    +    SSL+YL+L            +F  + +L  L +
Sbjct: 71  YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 292 SSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIP 349
            +       +    F   + L  +E+           S+ ++  +  L L        + 
Sbjct: 131 GNV-ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 350 SSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVL 409
                L+ +  ++    N +    S    ++V S           +     ++L+ L   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 410 DLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLV 469
            L  + ++       +   ++  L          + +     ++++R +   Q  L   +
Sbjct: 250 ILELSEVE-------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 470 PESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNS--NMFP 527
                 ++ +  + + ++K    +     + L+ L  L+LSEN        +++    +P
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 528 KIGTLKLSSCKITEFPN---FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLS 584
            + TL LS   +         L    NL  LD+S N       +  W     K+  LNLS
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP---EKMRFLNLS 418

Query: 585 HNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGN 644
              +              L VLD+ +N L                       +    +  
Sbjct: 419 STGIRVV----KTCIPQTLEVLDVSNNNL----------------------DSFSLFLPR 452

Query: 645 YINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN 704
                                       LQ L +S N L  ++P   +    L V+K+  
Sbjct: 453 ----------------------------LQELYISRNKLK-TLPDASLFPV-LLVMKISR 482

Query: 705 NEFLGTVPQVIGNECSLRTLDLSQNHL 731
           N+       +     SL+ + L  N  
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (369), Expect = 9e-37
 Identities = 103/532 (19%), Positives = 185/532 (34%), Gaps = 55/532 (10%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+S + IT  I G   L     LQ L L  + + +      F  L SL HL+LS +  S
Sbjct: 31  LDLSFNKITY-I-GHGDLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLS 87

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
                    L  L  L+L  +        +   +  L  NLTNL+ L +G ++       
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGN------PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYL 265
              + L++L  L +    +      SL  ++ + HL L  ++ +  +  F    SS++YL
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLP 325
            L    L       + +      +   +      +   F    +L    L  +       
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV----- 256

Query: 326 DSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISL 384
              ++  L    + +                 +  +   +      L   ++   KV  +
Sbjct: 257 -EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 385 KFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL 444
              ++     +P S+   L SL+ LDL  N +                  L  +   G  
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV--------------EEYLKNSACKGAW 360

Query: 445 EKFQNASSLSLREMDFSQNKLQGL--VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLR 502
                    SL+ +  SQN L+ +    E +  +K L  L +S N F      +  +   
Sbjct: 361 P--------SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM--PDSCQWPE 410

Query: 503 QLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRI 562
           ++  L LS            + +   +  L +S+  +  F  FL     L  L +S N++
Sbjct: 411 KMRFLNLSSTGIRV----VKTCIPQTLEVLDVSNNNLDSFSLFL---PRLQELYISRNKL 463

Query: 563 KGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQ 614
           K  +P+         L+ + +S N L++    G     T L  + LH+N   
Sbjct: 464 K-TLPD---ASLFPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  131 bits (330), Expect = 6e-32
 Identities = 88/528 (16%), Positives = 175/528 (33%), Gaps = 52/528 (9%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNK 464
           +++ LDL  N +  I    L    +++ L+L  ++ +  +E     S  SL  +D S N 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSN 524
           L  L       +  L  L L  N +       +F +L  L TL +        +   +  
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 525 MFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL 583
               +  L++ +  +  +    L++  ++ HL L  +     +     +     + +L L
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD-ILSSVRYLEL 203

Query: 584 SHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIG 643
               L  F+    +          +     +GS     +    L         +      
Sbjct: 204 RDTNLARFQ---FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 644 NYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLR 703
             +N    F+ + +++     L       ++ L +   +L   + +       +K + + 
Sbjct: 261 CTLNGLGDFNPSESDVVSE--LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 704 NNEFLGTVPQVIGNEC-SLRTLDLSQN---HLAGSLPKSLSKCTSLEVLDVGKNQLN--G 757
           N++ +  VP        SL  LDLS+N                 SL+ L + +N L    
Sbjct: 319 NSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 758 SFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
                L TL  L  L + S N    + D+        ++ +++SS      +     Q+ 
Sbjct: 378 KTGEILLTLKNLTSLDI-SRNTFHPMPDSCQWPEK--MRFLNLSSTGIR-VVKTCIPQT- 432

Query: 818 RGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQF 877
                          L+ + +  +NL                 +  L     + +S N+ 
Sbjct: 433 ---------------LEVLDVSNNNL--------------DSFSLFLPRLQELYISRNKL 463

Query: 878 EGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925
           +  +P+    F  LLV+ +S N  K         L  L  + L  N  
Sbjct: 464 K-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (251), Expect = 5e-22
 Identities = 79/505 (15%), Positives = 154/505 (30%), Gaps = 97/505 (19%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           +++ +D S NK+  +    +     L VL L S++ +  I  + F  L  L  L+LS+N+
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPN--FLRNQTNLFHLDLSNNRIKGEIPNWTW 571
            S   S     +   +  L L               N TNL  L + N     EI    +
Sbjct: 86  LSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 572 NVGDGKLVHLNLSHNMLEAFEKPGP-NLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYS 630
             G   L  L +    L  ++     ++    +  L LH +              FL   
Sbjct: 145 A-GLTSLNELEIKALSLRNYQSQSLKSIRD--IHHLTLHLS-----------ESAFLLEI 190

Query: 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC 690
                +++ Y      N A F            P+         + D S N L   +   
Sbjct: 191 FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRY 249

Query: 691 LVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV 750
           ++  + ++      N               L   + S++ +   L K   +  ++  L +
Sbjct: 250 ILELSEVEFDDCTLN--------------GLGDFNPSESDVVSELGKV--ETVTIRRLHI 293

Query: 751 GKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL---LQIIDISSNNFSG 807
            +  L          L +++ + ++++     +      +       L+ +D+S N    
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV----PCSFSQHLKSLEFLDLSENLMV- 347

Query: 808 NLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIF 867
                                                      L N         + T+ 
Sbjct: 348 ----------------------------------------EEYLKNSACKGAWPSLQTL- 366

Query: 868 TSIDVSNNQFEGEIPEMLGDFD---ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQ 924
               +S N     + +          L  L++S N F   +P +    +++  L+LS   
Sbjct: 367 ---VLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 925 LSGKIPEKLATLNFLSVLKLSQNLL 949
           +   +   +     L VL +S N L
Sbjct: 422 IR-VVKTCI--PQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.1 bits (242), Expect = 6e-21
 Identities = 72/436 (16%), Positives = 132/436 (30%), Gaps = 80/436 (18%)

Query: 527 PKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
              G     S   T  P+ L     +  LDLS N+I   I +         L  L L  +
Sbjct: 5   DASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKIT-YIGHGDLR-ACANLQVLILKSS 60

Query: 587 ML-----EAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYN 641
            +     +AF     +L S  L  LDL  N L                            
Sbjct: 61  RINTIEGDAFY----SLGS--LEHLDLSDNHLS--------------------------- 87

Query: 642 IGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI--LKV 699
               ++ + F  L+S                L+ L+L  N    ++    +  N+  L+ 
Sbjct: 88  ---SLSSSWFGPLSS----------------LKYLNLMGNPYQ-TLGVTSLFPNLTNLQT 127

Query: 700 LKLRNNEFLGTVP-QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGS 758
           L++ N E    +         SL  L++    L     +SL     +  L +  ++    
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 759 FPFWLETLPQLRVLVLQSNNYDG-SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
              + + L  +R L L+  N               + ++ +    +  +        +  
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 818 RGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKI-LTIFTSIDVSNNQ 876
           R + +          L  V  +   L            +  EL K+       + +    
Sbjct: 248 RYILE----------LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 877 FEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEK---L 933
              ++  +    + +  + + N+       +   +LK L  LDLS N +  +  +     
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 934 ATLNFLSVLKLSQNLL 949
                L  L LSQN L
Sbjct: 358 GAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 1/112 (0%)

Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
                ++  +   + +     S+D+S N+        L     L VL + ++        
Sbjct: 9   VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 908 TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQF 959
              +L  L  LDLS N LS         L+ L  L L  N     +     F
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLF 119

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  151 bits (383), Expect = 4e-39
 Identities = 103/545 (18%), Positives = 184/545 (33%), Gaps = 104/545 (19%)

Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSN 294
              L       ++L+ E+P    N  S    + +        P        +    +   
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 295 SNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGN 354
            +            Q   +EL+    S  LP+   +L   E L  S CN    +P    +
Sbjct: 69  LDR-----------QAHELELNNLGLS-SLPELPPHL---ESLVAS-CNSLTELPELPQS 112

Query: 355 LTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
           L  L+  + +    S   P       +  L  ++N       L        L+++D+ NN
Sbjct: 113 LKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLEKLPELQ---NSSFLKIIDVDNN 163

Query: 415 SLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESI 473
           SL+  +P       S+E +  G N    QLE+     +L  L  +    N L+ L P+  
Sbjct: 164 SLK-KLPDLP---PSLEFIAAGNN----QLEELPELQNLPFLTAIYADNNSLKKL-PDLP 214

Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK 533
                L  +   +N       L   ++L  L T+    N        +  ++ P +  L 
Sbjct: 215 LS---LESIVAGNNILE---ELPELQNLPFLTTIYADNNLLK-----TLPDLPPSLEALN 263

Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
           +    +T+ P   ++ T L   +   + +    PN         L +LN S N + +   
Sbjct: 264 VRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN---------LYYLNASSNEIRSLCD 314

Query: 594 PGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFS 653
             P+L       L++ +N L    P  P  +  L  S N     +P    N         
Sbjct: 315 LPPSLEE-----LNVSNNKLI-ELPALPPRLERLIASFNHLAE-VPELPQN--------- 358

Query: 654 LASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ 713
                              L+ L +  N L    P    S   ++ L++ ++  L  VP+
Sbjct: 359 -------------------LKQLHVEYNPLR-EFPDIPES---VEDLRMNSH--LAEVPE 393

Query: 714 VIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLV 773
           +  N   L+ L +  N L    P       S+E L +   ++   + F  ET  +L   V
Sbjct: 394 LPQN---LKQLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDV 446

Query: 774 LQSNN 778
            + ++
Sbjct: 447 FEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  131 bits (331), Expect = 2e-32
 Identities = 93/482 (19%), Positives = 178/482 (36%), Gaps = 77/482 (15%)

Query: 325 PDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISL 384
           P +++N  L E L     +    +P    N+        + + +  + P      + +++
Sbjct: 5   PRNVSNTFLQEPL--RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 385 KFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL 444
               +                   L+L N  L   +P+       +ESL+   N      
Sbjct: 63  SRLRDCL-----------DRQAHELELNNLGLS-SLPELP---PHLESLVASCNSLTELP 107

Query: 445 EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQL 504
           E  Q+  SL +   + +   L  L          L  L +S+N+      L   ++   L
Sbjct: 108 ELPQSLKSLLVD--NNNLKALSDL-------PPLLEYLGVSNNQLE---KLPELQNSSFL 155

Query: 505 GTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG 564
             +++  N+          ++ P +  +   + ++ E P   +N   L  +   NN +K 
Sbjct: 156 KIIDVDNNSLK-----KLPDLPPSLEFIAAGNNQLEELPEL-QNLPFLTAIYADNNSLK- 208

Query: 565 EIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASI 624
           ++P+         L  +   +N+LE   +   NL    L  +   +N+L+ + P  P S+
Sbjct: 209 KLPDLP-----LSLESIVAGNNILEELPELQ-NLPF--LTTIYADNNLLK-TLPDLPPSL 259

Query: 625 IFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT 684
             L+  +N  T  +P    +     V     S N+  G+     N   L  L+ S N + 
Sbjct: 260 EALNVRDNYLTD-LPELPQSLTFLDV-----SENIFSGLSELPPN---LYYLNASSNEIR 310

Query: 685 GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTS 744
            S+     S   L+ L + NN+ L  +P +      L  L  S NHLA  +P+      +
Sbjct: 311 -SLCDLPPS---LEELNVSNNK-LIELPALPPR---LERLIASFNHLA-EVPELP---QN 358

Query: 745 LEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNN 804
           L+ L V  N L   FP   E++  LR+     N++   + +         L+ + + +N 
Sbjct: 359 LKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPELPQN-----LKQLHVETNP 407

Query: 805 FS 806
             
Sbjct: 408 LR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (299), Expect = 2e-28
 Identities = 91/561 (16%), Positives = 183/561 (32%), Gaps = 130/561 (23%)

Query: 402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL------------EKFQN 449
               LQ     +++L   +P      +S        +++                 + ++
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 450 ASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITL-EMFKDLRQLGTLE 508
                  E++ +   L  L PE       L  L  S N  +    L E+ + L+ L    
Sbjct: 68  CLDRQAHELELNNLGLSSL-PELPPH---LESLVASCNSLT---ELPELPQSLKSLLVDN 120

Query: 509 LSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPN 568
            +    S        ++ P +  L +S+ ++ + P   +N + L  +D+ NN +K ++P+
Sbjct: 121 NNLKALS--------DLPPLLEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSLK-KLPD 170

Query: 569 WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLD 628
                    L  +   +N LE   +   NL    L  +   +N L+   P  P S+  + 
Sbjct: 171 LP-----PSLEFIAAGNNQLEELPELQ-NLPF--LTAIYADNNSLK-KLPDLPLSLESIV 221

Query: 629 YSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIP 688
              N     +P  + N           +N L   +P    +   L+ L++ DN+LT  +P
Sbjct: 222 AGNNILEE-LP-ELQNLPF-LTTIYADNNLLKT-LPDLPPS---LEALNVRDNYLT-DLP 273

Query: 689 SCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVL 748
               S   L V +   +       ++  N   L  L+ S N +  SL        SLE L
Sbjct: 274 ELPQSLTFLDVSENIFSGL----SELPPN---LYYLNASSNEIR-SLCDLP---PSLEEL 322

Query: 749 DVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGN 808
           +V  N+L    P      P+L  L+  S N+   + +         L+ + +  N     
Sbjct: 323 NVSNNKLI-ELP---ALPPRLERLIA-SFNHLAEVPEL-----PQNLKQLHVEYNPLR-E 371

Query: 809 LPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFT 868
            P                               ++                         
Sbjct: 372 FPD---------------------------IPESV------------------------E 380

Query: 869 SIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK 928
            + ++++    E+PE+      L  L++  N  + + P    ++++L    ++  ++   
Sbjct: 381 DLRMNSHL--AEVPELPQ---NLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDP 431

Query: 929 IPEKLATLNFLSVLKLSQNLL 949
                 T + L       +  
Sbjct: 432 YEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  114 bits (288), Expect = 5e-27
 Identities = 92/511 (18%), Positives = 165/511 (32%), Gaps = 122/511 (23%)

Query: 449 NASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLE 508
           N S+  L+E     + L  + P     +K       + +++         +  R++    
Sbjct: 7   NVSNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGE-QREMAVSR 64

Query: 509 LSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPN 568
           L +             +  +   L+L++  ++  P       +L  L  S N +  E+P 
Sbjct: 65  LRDC------------LDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLT-ELPE 108

Query: 569 WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFL 627
                    L  L + +N L+A     P L       L + +N L+    +   + +  +
Sbjct: 109 LP-----QSLKSLLVDNNNLKALSDLPPLLEY-----LGVSNNQLEKLPELQNSSFLKII 158

Query: 628 DYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSI 687
           D   N     +P    +        +  +N L   +P  L N   L  +   +N L   +
Sbjct: 159 DVDNNSLKK-LPDLPPSLEF----IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KL 210

Query: 688 PSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEV 747
           P   +S   L+ +   NN         + N   L T+    N L  +LP       SLE 
Sbjct: 211 PDLPLS---LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEA 261

Query: 748 LDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSG 807
           L+V  N L    P   ++L  L V     +       +         L  ++ SSN    
Sbjct: 262 LNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN---------LYYLNASSNEIR- 310

Query: 808 NLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIF 867
           +L                                +L                        
Sbjct: 311 SLCD---------------------------LPPSL------------------------ 319

Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
             ++VSNN+   E+P +      L  L  S N+   ++P    NLK+L    + +N L  
Sbjct: 320 EELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR- 370

Query: 928 KIPEKLATLNFLSVLKLSQNLLVGEIPRGPQ 958
           + P+   ++       L  N  + E+P  PQ
Sbjct: 371 EFPDIPESVE-----DLRMNSHLAEVPELPQ 396

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.7 bits (249), Expect = 4e-22
 Identities = 87/461 (18%), Positives = 152/461 (32%), Gaps = 100/461 (21%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
               L+ L  + NSL     P     L SL   N +    S   PL       L  L +S
Sbjct: 89  LPPHLESLVASCNSLTE--LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVS 139

Query: 165 ASGLVAPIQLRRANLEKL--VKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDC 222
                         LEKL  ++N + L+ + +    +       +  +  +L  ++  + 
Sbjct: 140 -----------NNQLEKLPELQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNN 183

Query: 223 HVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL 282
            +       L  L  LT +  D N L   +PD   +   L+ +                 
Sbjct: 184 QLEEL--PELQNLPFLTAIYADNNSLKK-LPDLPLS---LESIVAG-------------- 223

Query: 283 MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDC 342
                       +N+   LPE      L  I          LPD   +   LE L + D 
Sbjct: 224 ------------NNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRD- 266

Query: 343 NFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ 402
           N+   +P    +LT L   D S N FS  L     +  +  L  + N    ++     D 
Sbjct: 267 NYLTDLPELPQSLTFL---DVSENIFS-GLSELPPN--LYYLNASSNEIR-SLC----DL 315

Query: 403 LISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQ 462
             SL+ L++ NN L   +P        +E L+   N      E  QN     L+++    
Sbjct: 316 PPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLAEVPELPQN-----LKQLHVEY 366

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN 522
           N L+   P+    ++ L +    ++  +    L      + L  L +  N          
Sbjct: 367 NPLREF-PDIPESVEDLRM----NSHLAEVPEL-----PQNLKQLHVETNPLR-----EF 411

Query: 523 SNMFPKIGTLKLSSCKITEFPNFLRNQT-NLFHLDLSNNRI 562
            ++   +  L+++S ++ +   F    T  L      ++  
Sbjct: 412 PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 69/356 (19%), Positives = 122/356 (34%), Gaps = 66/356 (18%)

Query: 102 SLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSL 161
            L +   L+ +++ +NSL   P     D   SL  +    +     +P E+ +L  L ++
Sbjct: 148 ELQNSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAI 200

Query: 162 DLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPD 221
                           +L+KL     +LE +  G   +      P L  L  L  +   +
Sbjct: 201 YAD-----------NNSLKKLPDLPLSLESIVAGNNILEEL---PELQNLPFLTTIYADN 246

Query: 222 CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF 281
                 + +       L  LN+  N L+  +P+   + + L        GL     E   
Sbjct: 247 NL----LKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL----SE--- 294

Query: 282 LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSD 341
           L P+L +L+ SSN  +  SL + PPS  L+ + +S  +   +LP     L   E L  S 
Sbjct: 295 LPPNLYYLNASSN-EIR-SLCDLPPS--LEELNVSNNKLI-ELPALPPRL---ERLIASF 346

Query: 342 CNFFGSIPSSFGNLTELINIDFSRNNFS------GSLPSFASSNKVIS----------LK 385
            N    +P    NL +L       N          S+     ++ +            L 
Sbjct: 347 -NHLAEVPELPQNLKQL---HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
              N      P    D   S++ L + +  +      +  T   +E  +   +  H
Sbjct: 403 VETNPLR-EFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (357), Expect = 9e-36
 Identities = 89/482 (18%), Positives = 173/482 (35%), Gaps = 72/482 (14%)

Query: 82  HVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY 141
             +   +  + +T     + S  DL ++  L      + S     G + L +LT +N S 
Sbjct: 25  EKMKTVLGKTNVTD----TVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSN 77

Query: 142 SGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISG 201
           +  +   PL   +L  LV + ++ + +     L          NLTNL  L L    I+ 
Sbjct: 78  NQLTDITPL--KNLTKLVDILMNNNQIADITPL---------ANLTNLTGLTLFNNQITD 126

Query: 202 ADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSS 261
                 L  L+NL  L L    ++    S+LS L  L  L+        +    L N ++
Sbjct: 127 I---DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKP---LANLTT 178

Query: 262 LQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFS 321
           L+ L +S   +       +  + +L  L  ++N  ++  +      + L  + L+  +  
Sbjct: 179 LERLDISSNKV--SDISVLAKLTNLESLIATNN-QIS-DITPLGILTNLDELSLNGNQLK 234

Query: 322 GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKV 381
                ++ +L  L DL+L++       P     LT+L  +    N  S ++   A    +
Sbjct: 235 D--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPLAGLTAL 289

Query: 382 ISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
            +L+   N      P+S    L +L  L L  N++  I P                    
Sbjct: 290 TNLELNENQLEDISPIS---NLKNLTYLTLYFNNISDISP-------------------- 326

Query: 442 GQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDL 501
             +          L+ + F  NK+  +   S+  +  +N L    N+ S    L    +L
Sbjct: 327 --VSSLTK-----LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD---LTPLANL 374

Query: 502 RQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNR 561
            ++  L L++  ++       +N+   I     +       P  + +  +    D++ N 
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANV--SIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

Query: 562 IK 563
             
Sbjct: 433 PS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  141 bits (357), Expect = 9e-36
 Identities = 96/488 (19%), Positives = 183/488 (37%), Gaps = 47/488 (9%)

Query: 230 SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFL 289
            + + L       L   +++  V    T+   +  L     G+  +  + +  + +L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQI 73

Query: 290 DVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIP 349
           + S+N  LT  +      ++L  I ++  + +      + NL  L  L L +     +  
Sbjct: 74  NFSNN-QLT-DITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDI 127

Query: 350 SSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVL 409
               NLT L  ++ S N  S  + + +    +  L F  N  T   PL+    L +L+ L
Sbjct: 128 DPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF-GNQVTDLKPLA---NLTTLERL 182

Query: 410 DLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGL 468
           D+ +N +  I    L    ++ESL+   N    Q+        L +L E+  + N+L+ +
Sbjct: 183 DISSNKVSDI--SVLAKLTNLESLIATNN----QISDITPLGILTNLDELSLNGNQLKDI 236

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
              ++  +  L  L L++N+ S    L     L +L  L+L  N  S     +       
Sbjct: 237 --GTLASLTNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISNISPLAG---LTA 288

Query: 529 IGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIP--NWTWNVGDGKLVHLNLSHN 586
           +  L+L+  ++ +    + N  NL +L L  N I    P  + T      KL  L   +N
Sbjct: 289 LTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLT------KLQRLFFYNN 341

Query: 587 MLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNY 645
            +        NLT+  +  L    N +    P+     I  L  ++  + TN P N    
Sbjct: 342 KVSDVS-SLANLTN--INWLSAGHNQISDLTPLANLTRITQLGLNDQAW-TNAPVNYKAN 397

Query: 646 INYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNN 705
           ++        +  L    P ++ +       D++ N  +        + +    +     
Sbjct: 398 VSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTT 454

Query: 706 EFLGTVPQ 713
            F GTV Q
Sbjct: 455 TFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 3e-35
 Identities = 93/483 (19%), Positives = 172/483 (35%), Gaps = 51/483 (10%)

Query: 108 RLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASG 167
            L    +  ++  +  F      L       L  +  +  +    + L  + +L     G
Sbjct: 2   PLGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLG 57

Query: 168 LVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGP 227
           +         +++ + + L NL ++      ++       L  L+ L  + + +  +A  
Sbjct: 58  I--------KSIDGV-EYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADI 105

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLC 287
             + L+ L  LT L L  N ++    D L N ++L  L LS   +       +  + SL 
Sbjct: 106 --TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQ 159

Query: 288 FLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS 347
            L   +       L      + L+ +++S  + S      +  L  LE L  ++      
Sbjct: 160 QLSFGNQVT---DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214

Query: 348 IPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQ 407
            P   G LT L  +  + N     + + AS   +  L  A+N  +   PLS    L  L 
Sbjct: 215 TP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAPLS---GLTKLT 268

Query: 408 VLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQ 466
            L L  N +  I P  L    ++ +L L +N    QLE     S+L +L  +    N + 
Sbjct: 269 ELKLGANQISNISP--LAGLTALTNLELNEN----QLEDISPISNLKNLTYLTLYFNNIS 322

Query: 467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMF 526
            + P  +  +  L  L   +NK S    +    +L  +  L    N  S     +     
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQIS---DLTPLANL 374

Query: 527 PKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
            +I  L L+    T  P  +  + N+   +   N     I   T + G G     +++ N
Sbjct: 375 TRITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVTGALIAPATISDG-GSYTEPDITWN 431

Query: 587 MLE 589
           +  
Sbjct: 432 LPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (314), Expect = 3e-30
 Identities = 91/458 (19%), Positives = 169/458 (36%), Gaps = 52/458 (11%)

Query: 358 LINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQ 417
           L +   +++     + +  +  + +       + T T+  +    L  +  L      ++
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK 59

Query: 418 GIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESIFQI 476
            I    +    ++  +    N    QL       +L  L ++  + N++  + P  +  +
Sbjct: 60  SI--DGVEYLNNLTQINFSNN----QLTDITPLKNLTKLVDILMNNNQIADITP--LANL 111

Query: 477 KGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSS 536
             L  L L +N+ +    ++  K+L  L  LELS N  S     S  +    +  L   +
Sbjct: 112 TNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQLSFGN 165

Query: 537 CKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGP 596
                 P  L N T L  LD+S+N++  +I           L  L  ++N +     P  
Sbjct: 166 QVTDLKP--LANLTTLERLDISSNKVS-DISVLA---KLTNLESLIATNNQISDIT-PLG 218

Query: 597 NLTSTVLAVLDLHSNMLQGSFPIPP----ASIIFLDYSENKFTTNIPYNIGNYINYAVFF 652
            LT+  L  L L+ N L+    I       ++  LD + N+ +   P  +          
Sbjct: 219 ILTN--LDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTK-LTEL 270

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
            L +N +S   PL+   A  L  L+L++N L    P   + +  L  L L  N      P
Sbjct: 271 KLGANQISNISPLAGLTA--LTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP 326

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
             + +   L+ L    N +  S   SL+  T++  L  G NQ++   P  L  L ++  L
Sbjct: 327 --VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810
            L    +  +       N  A + I +   N     + 
Sbjct: 381 GLNDQAWTNAP-----VNYKANVSIPNTVKNVTGALIA 413

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (305), Expect = 4e-29
 Identities = 85/400 (21%), Positives = 142/400 (35%), Gaps = 42/400 (10%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           I   + L +L  L  L L +N +           L +L  L LS +  S    L  S L 
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISAL--SGLT 156

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKL--VKNLTNLEELYLGGIDISGADWGPILSILSNL 214
            L  L                 +  L  + NLT LE L +    +S      +L+ L+NL
Sbjct: 157 SLQQLSFG------------NQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNL 201

Query: 215 RILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYG 274
             L   +  ++    + L  L  L  L+L+GN L       L + ++L  L L+   +  
Sbjct: 202 ESLIATNNQISDI--TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN 257

Query: 275 RVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALL 334
                +  +  L  L + +N  ++ ++      + L  +EL+E +        I+NL  L
Sbjct: 258 --LAPLSGLTKLTELKLGAN-QIS-NISPLAGLTALTNLELNENQLED--ISPISNLKNL 311

Query: 335 EDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGT 394
             L L   N     P    +LT+L  + F  N  S  + S A+   +  L   HN  +  
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVSSLANLTNINWLSAGHNQISDL 368

Query: 395 IPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLS 454
            PL+    L  +  L L + +             SI + +              +  S +
Sbjct: 369 TPLA---NLTRITQLGLNDQAWTNAPVNYK-ANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 455 LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFIT 494
             E D + N       E  +       +   +  FSG +T
Sbjct: 425 --EPDITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  119 bits (301), Expect = 2e-28
 Identities = 87/555 (15%), Positives = 173/555 (31%), Gaps = 115/555 (20%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDF 460
             L       L   ++   + ++   +  + +L   +      ++  +  ++L   +++F
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQTDLDQ--VTTLQADRLGIKS-IDGVEYLNNL--TQINF 75

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
           S N+L  + P  +  +  L  + +++N+ +    +    +L  L  L L  N  +     
Sbjct: 76  SNNQLTDITP--LKNLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQIT---DI 127

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGE-IPNWTWNVGDGKLV 579
                   +  L+LSS  I++    L   T+L  L   N     + + N T       L 
Sbjct: 128 DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLT------TLE 180

Query: 580 HLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIP 639
            L++S N +         LT+  L  L   +N +    P+                TN+ 
Sbjct: 181 RLDISSNKVSDISVLA-KLTN--LESLIATNNQISDITPL-------------GILTNL- 223

Query: 640 YNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKV 699
                        SL  N L     L+      L  LDL++N ++   P  L     L  
Sbjct: 224 ----------DELSLNGNQLKDIGTLASLTN--LTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 700 LKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSF 759
           LKL  N+     P  +    +L  L+L++N L       +S   +L  L +  N ++   
Sbjct: 270 LKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS 325

Query: 760 PFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRG 819
           P  + +L +L+ L   +N     + D  +      +  +    N  S   P         
Sbjct: 326 P--VSSLTKLQRLFFYNNK----VSDVSSLANLTNINWLSAGHNQISDLTPLA------- 372

Query: 820 MKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEG 879
                               L+ +                        T + +++  +  
Sbjct: 373 -------------------NLTRI------------------------TQLGLNDQAWTN 389

Query: 880 EIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFL 939
                  +      +           PAT+ +       D++ N  S    E   T +  
Sbjct: 390 APVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQP 446

Query: 940 SVLKLSQNLLVGEIP 954
             +        G + 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  116 bits (293), Expect = 2e-27
 Identities = 92/470 (19%), Positives = 164/470 (34%), Gaps = 69/470 (14%)

Query: 484 LSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP 543
                 +   T      L +     L + N +  VS ++     ++ TL+     I    
Sbjct: 9   TQDTPINQIFTDT---ALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSID 62

Query: 544 NFLRNQTNLFHLDLSNNRIKGEIP--NWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTST 601
             +    NL  ++ SNN++    P  N T      KLV + +++N +     P  NLT+ 
Sbjct: 63  G-VEYLNNLTQINFSNNQLTDITPLKNLT------KLVDILMNNNQIADIT-PLANLTN- 113

Query: 602 VLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLS 660
            L  L L +N +    P+    ++  L+ S N  +      +    +         N ++
Sbjct: 114 -LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS--FGNQVT 168

Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
              PL+      L+ LD+S N ++    S L     L+ L   NN+   +    +G   +
Sbjct: 169 DLKPLANLTT--LERLDISSNKVSD--ISVLAKLTNLESLIATNNQI--SDITPLGILTN 222

Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
           L  L L+ N L      +L+  T+L  LD+  NQ++   P  L  L +L  L L +N   
Sbjct: 223 LDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ-- 276

Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLEL 840
             I +         L  ++++ N      P                   S +    YL L
Sbjct: 277 --ISNISPLAGLTALTNLELNENQLEDISPI------------------SNLKNLTYLTL 316

Query: 841 SNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNN 900
                 D   + +          LT    +   NN+        L +   +  L+  +N 
Sbjct: 317 YFNNISDISPVSS----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 901 FKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLV 950
                P  L NL  +  L L+    +       A ++  + +K     L+
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  104 bits (262), Expect = 1e-23
 Identities = 82/422 (19%), Positives = 147/422 (34%), Gaps = 61/422 (14%)

Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
                I +               L    +   +     +    ++  L      +++ + 
Sbjct: 9   TQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKSIDG 63

Query: 594 PGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYINYAVFF 652
               L +  L  ++  +N L    P+     ++ +  + N+     P  + N  N     
Sbjct: 64  VE-YLNN--LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTN-LTGL 117

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
           +L +N ++   PL       L  L+LS N ++    S L     L+ L   N     T  
Sbjct: 118 TLFNNQITDIDPLKNLTN--LNRLELSSNTISD--ISALSGLTSLQQLSFGNQV---TDL 170

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
           + + N  +L  LD+S N ++      L+K T+LE L    NQ++   P  L  L  L  L
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
            L  N     +KD  T  +   L  +D+++N  S   P         +            
Sbjct: 227 SLNGNQ----LKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLT----------- 268

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
                L+L      +   L            LT  T+++++ NQ E   P  + +   L 
Sbjct: 269 ----ELKLGANQISNISPLAG----------LTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGE 952
            L +  NN     P  + +L +L  L   +N++S      LA L  ++ L    N +   
Sbjct: 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368

Query: 953 IP 954
            P
Sbjct: 369 TP 370

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (339), Expect = 3e-34
 Identities = 74/379 (19%), Positives = 143/379 (37%), Gaps = 35/379 (9%)

Query: 186 LTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDG 245
              L  L      I         + L+      L    V   +  +  +L+ +T L + G
Sbjct: 2   AATLATLPAPINQIFP------DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 246 NDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFP 305
             ++S     +   ++L+YL+L+   +       +  +  L  L + +N  +T  +    
Sbjct: 54  EKVAS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTN-KIT-DISALQ 107

Query: 306 PSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSR 365
             + L+ + L+E   S      + NL  +  L L   N   S  S   N+T L  +  + 
Sbjct: 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGA-NHNLSDLSPLSNMTGLNYLTVTE 164

Query: 366 NNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLY 425
           +     +   A+   + SL   +N      PL+    L SL       N +  I P  + 
Sbjct: 165 SKVK-DVTPIANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITDITP--VA 218

Query: 426 TKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESIFQIKGLNVLRL 484
               + SL +G N    ++      ++L  L  ++   N++  +   ++  +  L +L +
Sbjct: 219 NMTRLNSLKIGNN----KITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNV 272

Query: 485 SSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN 544
            SN+ S    + +  +L QL +L L+ N            +   + TL LS   IT+   
Sbjct: 273 GSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP 328

Query: 545 FLRNQTNLFHLDLSNNRIK 563
            L + + +   D +N  IK
Sbjct: 329 -LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 1e-30
 Identities = 69/396 (17%), Positives = 149/396 (37%), Gaps = 55/396 (13%)

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
           +L           P +    L       L+  S+  ++ +       I  L++   K   
Sbjct: 4   TLATLPAPINQIFPDA---DLAEGIRAVLQKASVTDVVTQEELES--ITKLVVAGEKVA- 57

Query: 443 QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLR 502
            ++  +  ++L    ++ + N++  +    +  +  L  L + +NK +    +   ++L 
Sbjct: 58  SIQGIEYLTNL--EYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKIT---DISALQNLT 110

Query: 503 QLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRI 562
            L  L L+E+N S     S      K+ +L L +       + L N T L +L ++ +++
Sbjct: 111 NLRELYLNEDNIS---DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 563 KGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA 622
           K  +           L  L+L++N +E    P  +LTS  L     + N +         
Sbjct: 168 KD-VTPIANLT---DLYSLSLNYNQIEDIS-PLASLTS--LHYFTAYVNQI--------- 211

Query: 623 SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNH 682
                        T+I   + N         + +N ++   PL+  +   L  L++  N 
Sbjct: 212 -------------TDIT-PVANMTRLNSL-KIGNNKITDLSPLANLSQ--LTWLEIGTNQ 254

Query: 683 LTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKC 742
           ++    + +     LK+L + +N+   +   V+ N   L +L L+ N L     + +   
Sbjct: 255 ISD--INAVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 743 TSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           T+L  L + +N +    P  L +L ++      +  
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (307), Expect = 4e-30
 Identities = 77/371 (20%), Positives = 137/371 (36%), Gaps = 37/371 (9%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           IN      DL       L   S+         + L S+T L ++    +  I   I  L 
Sbjct: 12  INQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVA-SIQ-GIEYLT 66

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
            L  L+L+ + +     L          NL  L  LY+G   I+       L  L+NLR 
Sbjct: 67  NLEYLNLNGNQITDISPL---------SNLVKLTNLYIGTNKITDI---SALQNLTNLRE 114

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV 276
           L L + +++    S L+ L  +  LNL  N   S     L+N + L YL ++   +  + 
Sbjct: 115 LYLNEDNISDI--SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKV--KD 169

Query: 277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
              I  +  L  L ++ N  +   +      + L        + +      + N+  L  
Sbjct: 170 VTPIANLTDLYSLSLNYN-QIE-DISPLASLTSLHYFTAYVNQITD--ITPVANMTRLNS 225

Query: 337 LELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIP 396
           L++ +     +  S   NL++L  ++   N  S  + +     K+  L    N  +    
Sbjct: 226 LKIGNNKI--TDLSPLANLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSNQISDISV 282

Query: 397 LSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SL 455
           L+    L  L  L L NN L     + +    ++ +L L QN     +   +  +SL  +
Sbjct: 283 LN---NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN----HITDIRPLASLSKM 335

Query: 456 REMDFSQNKLQ 466
              DF+   ++
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (297), Expect = 8e-29
 Identities = 62/377 (16%), Positives = 128/377 (33%), Gaps = 34/377 (9%)

Query: 310 LKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFS 369
              +       +   PD+  +LA      L   +   +   +   L  +  +  +    +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVA 57

Query: 370 GSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQS 429
            S+        +  L    N  T   PLS    L+ L  L +  N +  I   +L    +
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISPLS---NLVKLTNLYIGTNKITDI--SALQNLTN 111

Query: 430 IESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNK 488
           +  L L ++     +      ++L  +  ++   N         +  + GLN L ++ +K
Sbjct: 112 LRELYLNED----NISDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESK 166

Query: 489 FSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRN 548
                 +    +L  L +L L+ N        S       +        +IT+    + N
Sbjct: 167 VKD---VTPIANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVNQITDITP-VAN 219

Query: 549 QTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDL 608
            T L  L + NN+I   +          +L  L +  N +        +LT   L +L++
Sbjct: 220 MTRLNSLKIGNNKITD-LSPLANLS---QLTWLEIGTNQISDINAVK-DLTK--LKMLNV 272

Query: 609 HSNMLQGSFPI-PPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSL 667
            SN +     +   + +  L  + N+        IG   N      L+ N+++   PL+ 
Sbjct: 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL-FLSQNHITDIRPLAS 331

Query: 668 CNAFDLQVLDLSDNHLT 684
            +   +   D ++  + 
Sbjct: 332 LSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (272), Expect = 1e-25
 Identities = 78/451 (17%), Positives = 142/451 (31%), Gaps = 107/451 (23%)

Query: 478 GLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC 537
           G   L       +         DL +     L + + +             I  L ++  
Sbjct: 1   GAATLATLPAPINQIFPDA---DLAEGIRAVLQKASVT---DVVTQEELESITKLVVAGE 54

Query: 538 KITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPN 597
           K+      +   TNL +L+L+ N+I    P         KL +L +  N +        N
Sbjct: 55  KVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLV----KLTNLYIGTNKITDIS-ALQN 108

Query: 598 LTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLAS 656
           LT+  L  L L+ + +    P+     +  L+   N   +++   + N      + ++  
Sbjct: 109 LTN--LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGL-NYLTVTE 164

Query: 657 NNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIG 716
           + +    P++      L  L L+ N +    P                          + 
Sbjct: 165 SKVKDVTPIANLTD--LYSLSLNYNQIEDISP--------------------------LA 196

Query: 717 NECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQS 776
           +  SL       N +       ++  T L  L +G N++    P  L  L QL  L + +
Sbjct: 197 SLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 777 NNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFV 836
           N     I D         L+++++ SN                           QI    
Sbjct: 253 NQ----ISDINAVKDLTKLKMLNVGSN---------------------------QISDIS 281

Query: 837 YLE-LSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLN 895
            L  LS L                         S+ ++NNQ   E  E++G    L  L 
Sbjct: 282 VLNNLSQL------------------------NSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 896 MSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926
           +S N+     P  L +L ++ S D ++  + 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 2e-25
 Identities = 64/304 (21%), Positives = 127/304 (41%), Gaps = 31/304 (10%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L+++ + IT      S L +L +L +L +  N +      S    L +L  L L+    S
Sbjct: 71  LNLNGNQITD----ISPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNIS 123

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
              PL  ++L  + SL+L A+  ++ +          + N+T L  L +    +      
Sbjct: 124 DISPL--ANLTKMYSLNLGANHNLSDL--------SPLSNMTGLNYLTVTESKVKDV--- 170

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYL 265
             ++ L++L  LSL    +     S L+ L  L +     N ++   P  + N + L  L
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLP 325
            +    +       +  +  L +L++ +N  ++  +      ++LK++ +   + S    
Sbjct: 227 KIGNNKI--TDLSPLANLSQLTWLEIGTN-QIS-DINAVKDLTKLKMLNVGSNQISD--I 280

Query: 326 DSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK 385
             +NNL+ L  L L++           G LT L  +  S+N+ +  +   AS +K+ S  
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-DIRPLASLSKMDSAD 339

Query: 386 FAHN 389
           FA+ 
Sbjct: 340 FANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 3e-24
 Identities = 67/420 (15%), Positives = 137/420 (32%), Gaps = 79/420 (18%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
           TL      I +      +        L    +   +           +  L ++   + +
Sbjct: 4   TLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVTQ----EELESITKLVVAGEKVAS 58

Query: 591 FEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYINYA 649
            +     LT+  L  L+L+ N +    P+     +  L    NK T              
Sbjct: 59  IQGIE-YLTN--LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-------------- 101

Query: 650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLG 709
                           +L N  +L+ L L++++++   P  L +   +  L L  N    
Sbjct: 102 -------------DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH-NL 145

Query: 710 TVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQL 769
           +    + N   L  L ++++ +    P  ++  T L  L +  NQ+    P  L +L  L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201

Query: 770 RVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQE 829
                  N     I D         L  + I +N  +             + +       
Sbjct: 202 HYFTAYVNQ----ITDITPVANMTRLNSLKIGNNKITD------LSPLANLSQ------- 244

Query: 830 SQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFD 889
              L ++ +  + +   ++V  + K               ++V +NQ       +L +  
Sbjct: 245 ---LTWLEIGTNQISDINAVKDLTK------------LKMLNVGSNQISD--ISVLNNLS 287

Query: 890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
            L  L ++NN    +    +G L  L +L LS N ++   P  LA+L+ +     +  ++
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.9 bits (198), Expect = 5e-16
 Identities = 61/348 (17%), Positives = 108/348 (31%), Gaps = 73/348 (20%)

Query: 603 LAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSG 661
            A L      +   FP    A  I     +   T  +       I       +A   ++ 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITK---LVVAGEKVAS 58

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
              +      +L+ L+L+ N +T   P   +    L  L +  N+   T    + N  +L
Sbjct: 59  IQGIEYLT--NLEYLNLNGNQITDISPLSNLVK--LTNLYIGTNKI--TDISALQNLTNL 112

Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDG 781
           R L L++++++      L+  T +  L++G N    S    L  +  L  L +  +    
Sbjct: 113 RELYLNEDNISD--ISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESK--- 166

Query: 782 SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELS 841
            +KD         L  + ++ N                                   ++S
Sbjct: 167 -VKDVTPIANLTDLYSLSLNYNQIE--------------------------------DIS 193

Query: 842 NLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNF 901
            L                    LT         NQ     P  + +   L  L + NN  
Sbjct: 194 PLAS------------------LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233

Query: 902 KGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
               P  L NL +L  L++  NQ+S      +  L  L +L +  N +
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 35/234 (14%), Positives = 70/234 (29%), Gaps = 41/234 (17%)

Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
             TL      +    P   +         + K  +        E L  +  LV+      
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEK-- 55

Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLEL 840
             +   Q       L+ ++++ N  +   P                     +   V L  
Sbjct: 56  --VASIQGIEYLTNLEYLNLNGNQITDISP---------------------LSNLVKLTN 92

Query: 841 SNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNN 900
             +         NK   +   + LT    + ++ +      P  L +   +  LN+  N+
Sbjct: 93  LYIGT-------NKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143

Query: 901 FKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIP 954
                 + L N+  L  L ++ +++    P  +A L  L  L L+ N +    P
Sbjct: 144 -NLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (323), Expect = 2e-31
 Identities = 59/462 (12%), Positives = 147/462 (31%), Gaps = 29/462 (6%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
           +  R +   + D+SL  +   S     +++  L+LS +  S     +++    L  L+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV 224
           ++ L   + L          +L+ L  L L    +        L +  ++  L   + ++
Sbjct: 67  SNVLYETLDLE---------SLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI 111

Query: 225 AGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF-LM 283
           +     S S+ Q   ++ L  N ++          S +QYL L L  +      ++    
Sbjct: 112 S---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 284 PSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCN 343
            +L  L++  N  +   +      ++LK ++LS  + +  +     + A +  + L + N
Sbjct: 169 DTLEHLNLQYN-FIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN-N 224

Query: 344 FFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQL 403
               I  +      L + D   N F         S        A  +    +     ++ 
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEEC 283

Query: 404 ISLQVLDLRNNSLQGI---IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDF 460
               +        + +       L   +  E  LL       +  + +  +    RE+D 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
            + + + ++ +   + +    L          ++    +   +L                
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN-GRRAHAELDGTLQQAVGQIELQHA 402

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRI 562
           +      ++    +   +             +   D+  ++ 
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (307), Expect = 3e-29
 Identities = 55/465 (11%), Positives = 122/465 (26%), Gaps = 53/465 (11%)

Query: 300 SLPEFPPS-SQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTEL 358
           ++ E   + ++ K+ +++++     L     +   +++L+LS         +     T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 359 INIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQG 418
             ++ S N          S + + +L   +N     +         S++ L   NN++  
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR 113

Query: 419 IIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKG 478
           +                                    + +  + NK+  L          
Sbjct: 114 VSCSRGQ----------------------------GKKNIYLANNKITMLRDLDEGCRSR 145

Query: 479 LNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCK 538
           +  L L  N+       E+      L  L L  N            +F K+ TL LSS K
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNK 202

Query: 539 ITEFPNFLRNQTNLFHLDLSNNRIK---GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPG 595
           +       ++   +  + L NN++      +           L H +L  N         
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ------NLEHFDLRGNGFHCGTLRD 256

Query: 596 PNLTSTVLAVLDLHSN-MLQGSFPIPPASIIFLDYSENK---FTTNIPYNIGNYINYAVF 651
               +  +  +   +   L G             Y               +         
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316

Query: 652 FSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTV 711
                 + +  +     N    + +D         I    +       L+ +       V
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 712 PQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
                    L             L  +  + + L++L     +  
Sbjct: 377 SNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  120 bits (303), Expect = 8e-29
 Identities = 73/506 (14%), Positives = 140/506 (27%), Gaps = 67/506 (13%)

Query: 324 LPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVI 382
           + +   N    +  +++D +   ++ S   +   +  +D S N  S       A   K+ 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
            L  + N    T+ L     L +L+ LDL NN +Q      L    SIE+L    N    
Sbjct: 62  LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANN---- 109

Query: 443 QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLR 502
            + +   +     + +  + NK+  L          +  L L  N+       E+     
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 503 QLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRI 562
            L  L L  N                          I +    +     L  LDLS+N++
Sbjct: 170 TLEHLNLQYN-------------------------FIYDVKGQV-VFAKLKTLDLSSNKL 203

Query: 563 KGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA 622
              +     +     +  ++L +N L   EK      +  L   DL  N           
Sbjct: 204 A-FMGPEFQSAA--GVTWISLRNNKLVLIEKALRFSQN--LEHFDLRGNGFH-------- 250

Query: 623 SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNH 682
                          +                    L+G                     
Sbjct: 251 ------------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 683 LTGSIPSCLVS--SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLS 740
           L       L++       +L  + +E    +     N+   R +D  +      + +   
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSE-TERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 741 KCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDI 800
           +  +   L+  K  L+           +L   + Q+         T+  +   LL+ I  
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 801 SSNNFSGNLPARWFQSWRGMKKRTKE 826
                     +    + R       +
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 8e-28
 Identities = 78/433 (18%), Positives = 138/433 (31%), Gaps = 30/433 (6%)

Query: 531 TLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLE 589
             K++   + +   +  ++  N+  LDLS N +              KL  LNLS N+L 
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLY 71

Query: 590 AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYA 649
                  +L++  L  LDL++N +Q    + P SI  L  + N  +  +  + G      
Sbjct: 72  ETL-DLESLST--LRTLDLNNNYVQ-ELLVGP-SIETLHAANNNISR-VSCSRGQGK--- 122

Query: 650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTG-SIPSCLVSSNILKVLKLRNNEFL 708
               LA+N ++    L       +Q LDL  N +   +      SS+ L+ L L+ N  +
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-I 181

Query: 709 GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQ 768
             V   +     L+TLDLS N LA  +         +  + +  N+L       L     
Sbjct: 182 YDVKGQVVFA-KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 769 LRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK------ 822
           L    L+ N            + F+  Q +   +      L  +  +             
Sbjct: 239 LEHFDLRGNG----FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIP 882
             ++       + + L+              + L  E          ID    Q+   I 
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ-REIDALKEQYRTVID 353

Query: 883 EMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG--KIPEKLATLNFLS 940
           ++     A + L         Q+        EL                 E+ + L  L 
Sbjct: 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLR 413

Query: 941 VLKLSQNLLVGEI 953
            +      +  E 
Sbjct: 414 AIVKRYEEMYVEQ 426

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (280), Expect = 7e-26
 Identities = 55/388 (14%), Positives = 117/388 (30%), Gaps = 26/388 (6%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
            +  +I  + D  +   + S       +  L+L GN LS      L  F+ L+ L+LS  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 271 GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINN 330
            LY      +  + +L  LD+++N      + E      ++ +  +    S ++  S   
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNIS-RVSCSR-- 118

Query: 331 LALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG--SLPSFASSNKVISLKFAH 388
               +++ L++           G  + +  +D   N           ASS+ +  L   +
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 389 NSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQ 448
           N       +        L+ LDL +N L   +     +   +  + L  NK     +  +
Sbjct: 179 NFIYD---VKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 449 NASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLE 508
            +   +L   D   N          F  K   V  ++       +T +  ++        
Sbjct: 235 FSQ--NLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKK-LTGQNEEECTVPTLGH 290

Query: 509 LSENNFSFNVSGSNSNMF----PKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG 564
                     +     +      +   L     +         NQ     +D    + + 
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR- 349

Query: 565 EIPNWTWNVGDGKLVHLNLSHNMLEAFE 592
            + +          + L      L+   
Sbjct: 350 TVIDQVTL-RKQAKITLEQKKKALDEQV 376

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  103 bits (258), Expect = 4e-23
 Identities = 57/466 (12%), Positives = 132/466 (28%), Gaps = 31/466 (6%)

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLC 287
           IH             +  + L   +     +  +++ L LS   L       +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 288 FLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS 347
            L++SSN  L     +    S L+ ++L+           +     +E L  ++ N    
Sbjct: 62  LLNLSSN-VLY-ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAAN-NNISR 113

Query: 348 IPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGTIPLSYGDQLISL 406
           +  S        NI  + N  +          ++V  L    N               +L
Sbjct: 114 VSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 407 QVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQ 466
           + L+L+ N +  +  + +     +++L L  NK      +FQ+A+   +  +    NKL 
Sbjct: 172 EHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAA--GVTWISLRNNKLV 227

Query: 467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMF 526
            +  +++   + L    L  N F      + F   +++ T+          ++G N    
Sbjct: 228 LI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEEC 283

Query: 527 PKIGTLKLSSCKITEFPN------FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
                    +    + P           +     L    +  +  +     N    +   
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECEREN--QARQRE 340

Query: 581 LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFT--TNI 638
           ++                       L+     L         +   LD +  +      +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQA-KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 639 PYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT 684
            +         +  ++        +         ++  D+  +  T
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.8 bits (241), Expect = 5e-21
 Identities = 50/379 (13%), Positives = 114/379 (30%), Gaps = 25/379 (6%)

Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
             L     ++ L+ A+N++          R     ++ L+ +  +    L+      +  
Sbjct: 93  QELLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 161 LDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLP 220
           LDL  +      ++   N  +L  +   LE L L    I          + + L+ L L 
Sbjct: 149 LDLKLN------EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLS 199

Query: 221 DCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKI 280
              +A  +         +T ++L  N L   +   L    +L++  L   G +       
Sbjct: 200 SNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 281 FL-MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLEL 339
           F     +  +   +   LTG        +   +                + L  L+  E 
Sbjct: 258 FSKNQRVQTVAKQTVKKLTG--QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 340 S----DCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP-SFASSNKVISLKFAHNSFTGT 394
           +      +    +     N      ID  +  +   +          I+L+    +    
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 395 IPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLS 454
           +          L     +       +  +   +  ++ L     ++     + Q+  + +
Sbjct: 376 VSNG-RRAHAELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433

Query: 455 LREMDFSQNKLQGLVPESI 473
           +R+ D  Q+K   L  E+ 
Sbjct: 434 IRDWDMYQHKETQLAEENA 452

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.2 bits (229), Expect = 2e-19
 Identities = 46/423 (10%), Positives = 119/423 (28%), Gaps = 29/423 (6%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           +  +  L  L  L+ L+L +N +             S+  L+ + +  S    +  S  +
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNISR---VSCSRGQ 120

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
              ++ L+ + +           +      + ++ L L   +I   ++  + +    L  
Sbjct: 121 GKKNIYLANNKITMLR-------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV 276
           L+L    +   +   +     L  L+L  N L+  +     + + + ++ L    L   +
Sbjct: 174 LNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLI 229

Query: 277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
            + +    +L   D+  N            S   +V  +++         +     +   
Sbjct: 230 EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 337 LELSDCNFFGSIPSSFGNLTELIN-----IDFSRNNFSGSLPSFASSNKVISLKFAHNSF 391
                             L  L       +    +          +  +   +      +
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 392 TGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNAS 451
             T+      +  +   L+ +  +L   +         ++  L             +  S
Sbjct: 349 R-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 452 SLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGF-ITLEMFKDLRQLGTLELS 510
            L L      + +    V +   Q   +    +  +K +         K L     L L+
Sbjct: 408 PLQLLRAIVKRYEEM-YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466

Query: 511 ENN 513
             N
Sbjct: 467 SAN 469

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.1 bits (221), Expect = 1e-18
 Identities = 49/291 (16%), Positives = 97/291 (33%), Gaps = 45/291 (15%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
            I     N    ++  ++D+ L  ++ S   S+  +K L L  N         +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDG 781
             L+LS N L       L   ++L  LD+  N +       L   P +  L   +NN   
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN--- 110

Query: 782 SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELS 841
            I      +     + I +++N  +  L          ++               YL+L 
Sbjct: 111 -ISRVS-CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQ---------------YLDLK 152

Query: 842 NLYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQFEGEIPEMLGDFDALLVLNMSN 898
                      N+  ++  A++     +   +++  N    ++   +  F  L  L++S+
Sbjct: 153 L----------NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSS 200

Query: 899 NNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
           N     +     +   +  + L +N+L   I + L     L    L  N  
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 6e-12
 Identities = 52/352 (14%), Positives = 102/352 (28%), Gaps = 17/352 (4%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+  + I   +N +        L+HLNL  N +Y             L  L+LS +  +
Sbjct: 149 LDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDVK-GQVV--FAKLKTLDLSSNKLA 204

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
             +  E  S   +  + L  + LV         +EK ++   NLE   L G         
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV--------LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 206 PILSILSNLRILSLPD-CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
              S    ++ ++      + G      +   L  +      DL +   D L      ++
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEH 315

Query: 265 LHLSLCGLY-GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGK 323
             LS  G    R+  +         +D       T              +E  +     +
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 324 LPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFS-GSLPSFASSNKVI 382
           + +     A L+            +  +    + L  +      +    +   +  N  I
Sbjct: 376 VSNGRRAHAELDGTLQQA-VGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAI 434

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLL 434
                +      +              DL   S    + + +  +Q++ S L
Sbjct: 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLASQL 486

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 859 ELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSL 918
           E+ +    +    V+++  +  +  +      +  L++S N       A L    +L  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 919 DLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQ 958
           +LS N L     + L +L+ L  L L+ N +  E+  GP 
Sbjct: 64  NLSSNVLYE-TLD-LESLSTLRTLDLNNNYV-QELLVGPS 100

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 2e-28
 Identities = 71/373 (19%), Positives = 131/373 (35%), Gaps = 48/373 (12%)

Query: 447 FQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGT 506
           F++ +  + + + F  + ++ L    +   + + +L L+  +    I    F     +  
Sbjct: 39  FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQK 97

Query: 507 LELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGE 565
           L +  N   +       N+ P +  L L    ++  P     N   L  L +SNN ++  
Sbjct: 98  LYMGFNAIRYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-R 155

Query: 566 IPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASII 625
           I + T+      L +L LS N L         + S  L   ++  N+L  +  IP  ++ 
Sbjct: 156 IEDDTFQ-ATTSLQNLQLSSNRLTHV--DLSLIPS--LFHANVSYNLLS-TLAIPI-AVE 208

Query: 626 FLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTG 685
            LD S N                              +   +    +L +L L  N+LT 
Sbjct: 209 ELDASHNSINV--------------------------VRGPVNV--ELTILKLQHNNLT- 239

Query: 686 SIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSL 745
                L++   L  + L  NE    +         L  L +S N L  +L        +L
Sbjct: 240 DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTL 297

Query: 746 EVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNF 805
           +VLD+  N L            +L  L L  N+    I   +  +    L+ + +S N++
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS----IVTLK-LSTHHTLKNLTLSHNDW 351

Query: 806 SGNLPARWFQSWR 818
             N     F++  
Sbjct: 352 DCNSLRALFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  114 bits (288), Expect = 2e-27
 Identities = 68/422 (16%), Positives = 142/422 (33%), Gaps = 56/422 (13%)

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSL 286
           I S+L    +   +++D               ++ + +      +  ++P  +      +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQV 71

Query: 287 CFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG 346
             L+++                Q++ I+            +      ++ L +   N   
Sbjct: 72  ELLNLNDL--------------QIEEID----------TYAFAYAHTIQKLYMGF-NAIR 106

Query: 347 SIPSS-FGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQL 403
            +P   F N+  L  +   RN+ S SLP   F ++ K+ +L  ++N+    I        
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQAT 164

Query: 404 ISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQN 463
            SLQ L L +N L  +    +    S+    +  N     L        +++ E+D S N
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYN----LLSTLAI--PIAVEELDASHN 215

Query: 464 KLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNS 523
            +  +    +     L +L+L  N  +         +   L  ++LS N     +     
Sbjct: 216 SINVV-RGPVNV--ELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269

Query: 524 NMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL 583
            M  ++  L +S+ ++     + +    L  LDLS+N +   +          +L +L L
Sbjct: 270 KM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF--DRLENLYL 325

Query: 584 SHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQG-SFPIPPASIIFLDYSENKFTTNIPYNI 642
            HN +           +  L  L L  N     S      ++      +      I Y +
Sbjct: 326 DHNSIVTL--KLSTHHT--LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQL 381

Query: 643 GN 644
            +
Sbjct: 382 EH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (274), Expect = 1e-25
 Identities = 74/389 (19%), Positives = 132/389 (33%), Gaps = 49/389 (12%)

Query: 345 FGSIPSSFGNLTELINIDFSRNNFSGSL-PSFASSNKVISLKFAHNSFTGTIPLSYGDQL 403
           +  I S+        ++                + N    + F +++    +P +  D  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSF 68

Query: 404 ISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQ 462
             +++L+L +  ++ I   +     +I+ L +G N         FQN   L    +   +
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL--TVLVLER 126

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN 522
           N L  L          L  L +S+N     I  + F+    L  L+LS N  +      +
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT----HVD 181

Query: 523 SNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLN 582
            ++ P +    +S   ++           +  LD S+N I   +          +L  L 
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSIN-VVRGPVNV----ELTILK 232

Query: 583 LSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNI 642
           L HN L         L    L  +DL  N L                        I Y+ 
Sbjct: 233 LQHNNLT---DTAWLLNYPGLVEVDLSYNEL----------------------EKIMYHP 267

Query: 643 GNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKL 702
              +       +++N L   + L       L+VLDLS NHL   +       + L+ L L
Sbjct: 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
            +N  + T+   +    +L+ L LS N  
Sbjct: 326 DHNS-IVTLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (257), Expect = 2e-23
 Identities = 67/384 (17%), Positives = 126/384 (32%), Gaps = 58/384 (15%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
            D+     T  +        L   + +   ++++   P  +  D    +  LNL+     
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE 82

Query: 146 GHIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADW 204
             I     +    +  L +  + +   +         + +N+  L  L            
Sbjct: 83  -EIDTYAFAYAHTIQKLYMGFNAIRY-LP------PHVFQNVPLLTVLV----------- 123

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
                 L    + SLP                 LT L++  N+L     D     +SLQ 
Sbjct: 124 ------LERNDLSSLPR--------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169

Query: 265 LHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKL 324
           L LS   L   V   +   PSL   +VS N      L        ++ ++ S    +  +
Sbjct: 170 LQLSSNRL-THVDLSLI--PSLFHANVSYN-----LLSTLAIPIAVEELDASHNSIN-VV 220

Query: 325 PDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP--SFASSNKVI 382
              +     L  L+L   N          N   L+ +D S N     +    F    ++ 
Sbjct: 221 RGPV--NVELTILKLQH-NNLTDTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLE 275

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
            L  ++N     +   YG  + +L+VLDL +N L   + ++      +E+L L  N    
Sbjct: 276 RLYISNNRLV-ALN-LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN---- 328

Query: 443 QLEKFQNASSLSLREMDFSQNKLQ 466
            +   + ++  +L+ +  S N   
Sbjct: 329 SIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 7e-20
 Identities = 75/423 (17%), Positives = 142/423 (33%), Gaps = 97/423 (22%)

Query: 507 LELSENNFSFNVSGSNSNM-FPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKG 564
            ++  +  + +V     ++       +   +  + + P   L +   +  L+L++ +I+ 
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 82

Query: 565 EIPNWTWNVGDGKLVHLNLSHNMLEAFEK-PGPNLTSTVLAVLDLHSNMLQGSFPIPPAS 623
           EI  + +      +  L +  N +         N+    L VL L  N L          
Sbjct: 83  EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPL--LTVLVLERNDL---------- 129

Query: 624 IIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHL 683
                       +++P  I        F +                   L  L +S+N+L
Sbjct: 130 ------------SSLPRGI--------FHNTPK----------------LTTLSMSNNNL 153

Query: 684 TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
                    ++  L+ L+L +N  L  V   +    SL   ++S N L      +L+   
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-----STLAIPI 205

Query: 744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSN 803
           ++E LD   N +N           +L +L LQ NN    + DT     +  L  +D+S N
Sbjct: 206 AVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYN 258

Query: 804 NFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKI 863
                +    F     M++          L+ +Y+  + L   +        L       
Sbjct: 259 ELE-KIMYHPFV---KMQR----------LERLYISNNRLVALNLYGQPIPTL------- 297

Query: 864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHN 923
                 +D+S+N     +      FD L  L + +N+    +   L     L +L LSHN
Sbjct: 298 ----KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHN 349

Query: 924 QLS 926
              
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.7 bits (223), Expect = 5e-19
 Identities = 63/371 (16%), Positives = 113/371 (30%), Gaps = 45/371 (12%)

Query: 582 NLSHNMLEAFEKPGPNLTSTVLAVLDL---HSNMLQGSFPIPPASIIFLDYSENKFTTNI 638
           N+     E            V   + +     ++  G   I   +   + +  +     +
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-L 60

Query: 639 PYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILK 698
           P  + +        +L    +      +   A  +Q L +  N +    P    +  +L 
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 699 VLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGS 758
           VL L  N+       +  N   L TL +S N+L      +    TSL+ L +  N+L   
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-H 179

Query: 759 FPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWR 818
                  +P L    +  N          T      ++ +D S N+ +  +         
Sbjct: 180 VDL--SLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSIN-VVRGPVNVELT 229

Query: 819 GMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFE 878
                              L+L +    D+  L+N                +D+S N+ E
Sbjct: 230 ------------------ILKLQHNNLTDTAWLLN----------YPGLVEVDLSYNELE 261

Query: 879 GEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNF 938
             +         L  L +SNN     +      +  L  LDLSHN L   +       + 
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

Query: 939 LSVLKLSQNLL 949
           L  L L  N +
Sbjct: 320 LENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
             +   N+        +L  F  + +LN+++   +            +  L +  N +  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 928 KIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
             P     +  L+VL L +N L   +PRG
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRG 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 18/138 (13%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           +  ++ L +   L  ++L+ N L        F ++  L  L +S +     + L    + 
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295

Query: 157 MLVSLDLSASGL--VAPIQLRRANLEKL-----------VKNLTNLEELYLGGIDISGAD 203
            L  LDLS + L  V   Q +   LE L           +     L+ L L   D     
Sbjct: 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD--- 352

Query: 204 WGPILSILSNLRILSLPD 221
              + ++  N+   ++ D
Sbjct: 353 CNSLRALFRNVARPAVDD 370

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  119 bits (299), Expect = 6e-28
 Identities = 76/471 (16%), Positives = 146/471 (30%), Gaps = 70/471 (14%)

Query: 480 NVLRLSSNKFSGFITL---EMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSS 536
           N   LS N F   I+    + F    +     L   N +  VS     +  +   L+L+ 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 537 CKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGP 596
             ++  P+ L     +  L+++ N +   +P          L +L+   N L    +   
Sbjct: 69  LNLSSLPDNLP--PQITVLEITQNALI-SLPELP-----ASLEYLDACDNRLSTLPELPA 120

Query: 597 NLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLAS 656
           +L       LD+ +N L    P  PA + +++   N+ T                     
Sbjct: 121 SLKH-----LDVDNNQLT-MLPELPALLEYINADNNQLTM-------------------- 154

Query: 657 NNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIG 716
                 +P    +   L+VL + +N LT  +P    S   L+ L +  N  L ++P V  
Sbjct: 155 ------LPELPTS---LEVLSVRNNQLT-FLPELPES---LEALDVSTNL-LESLPAVPV 200

Query: 717 NECSLRT----LDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
                          +N +   +P+++        + +  N L+      L         
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
                 +  S     T +      +      N   ++   W           +  + +  
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW--------HAFEHEEHANT 311

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
                  LS+     + +   + ++  L K L+    +   +     +  E   D  AL 
Sbjct: 312 FSAFLDRLSDTVSARNTSGFREQVAAWLEK-LSASAELRQQSFAVAADATESCEDRVALT 370

Query: 893 VLNMSNNNF-----KGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNF 938
             N+          +G      G L  LG        L     +K+ TL+F
Sbjct: 371 WNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHF 421

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 5e-20
 Identities = 65/361 (18%), Positives = 118/361 (32%), Gaps = 68/361 (18%)

Query: 653  SLASNNLSGGIPLSLCNAFD----LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL 708
              +  N   G      +A+D      +   + N     +  CL++      L+L     L
Sbjct: 15   QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FSELQLNRLN-L 71

Query: 709  GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQ 768
             ++P  +     +  L+++QN L  SLP+      SLE LD   N+L+ + P   E    
Sbjct: 72   SSLPDNLPP--QITVLEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLP---ELPAS 121

Query: 769  LRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQ 828
            L+ L + +N        T      ALL+ I+  +N  +  LP                  
Sbjct: 122  LKHLDVDNNQL------TMLPELPALLEYINADNNQLT-MLPE----------------- 157

Query: 829  ESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDF 888
                     L + N          N+ L+  L ++     ++DVS N  E  +P +    
Sbjct: 158  --LPTSLEVLSVRN----------NQ-LT-FLPELPESLEALDVSTNLLE-SLPAVPVRN 202

Query: 889  DAL----LVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKL 944
                   +      N     IP  + +L    ++ L  N LS +I E L+          
Sbjct: 203  HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 945  SQNLLVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFD 1004
             +        +               A       P+  Q+ +  +    + EE + +   
Sbjct: 262  PRIYFSMSDGQQNTL-------HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

Query: 1005 W 1005
            +
Sbjct: 315  F 315

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.7 bits (217), Expect = 7e-18
 Identities = 58/334 (17%), Positives = 120/334 (35%), Gaps = 51/334 (15%)

Query: 228 IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLC 287
             S+  K +       + N+  S + + L   +    L L+   L   +P+ +   P + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL-SSLPDNLP--PQIT 83

Query: 288 FLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS 347
            L+++ N  L  SLPE P  + L+ ++  + R S  LP+   +L   + L++ + N    
Sbjct: 84  VLEITQN-ALI-SLPELP--ASLEYLDACDNRLS-TLPELPASL---KHLDVDN-NQLTM 134

Query: 348 IPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQ 407
           +P     L  +   +   N  +  LP   +S +V+S+   +N  T  +P    +   SL+
Sbjct: 135 LPELPALLEYI---NADNNQLT-MLPELPTSLEVLSV--RNNQLT-FLP----ELPESLE 183

Query: 408 VLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQG 467
            LD+  N L+ + P         E   +                          +N++  
Sbjct: 184 ALDVSTNLLESL-PAVPVRNHHSEETEI---------------------FFRCRENRITH 221

Query: 468 LVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFP 527
           + PE+I  +     + L  N  S   +       +Q    +       F++S    N   
Sbjct: 222 I-PENILSLDPTCTIILEDNPLS---SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 528 KIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNR 561
           +     +++       + +    + F  +   N 
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANT 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 59/352 (16%), Positives = 101/352 (28%), Gaps = 80/352 (22%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
           + +   L L   +L S   P        +T L ++ +     +P   +SL+ L       
Sbjct: 58  INQFSELQLNRLNLSS--LPDNLPP--QITVLEITQNALI-SLPELPASLEYL------- 105

Query: 166 SGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVA 225
                        L  L +   +L+ L                  + N ++  LP+    
Sbjct: 106 -------DACDNRLSTLPELPASLKHLD-----------------VDNNQLTMLPEL--- 138

Query: 226 GPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPS 285
                      LL ++N D N L+  +P+  T+   L+ L +    L   +PE   L  S
Sbjct: 139 ---------PALLEYINADNNQLTM-LPELPTS---LEVLSVRNNQL-TFLPE---LPES 181

Query: 286 LCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFF 345
           L  LDVS+N  L  SLP  P  +                    ++          + N  
Sbjct: 182 LEALDVSTN-LLE-SLPAVPVRNH-------------------HSEETEIFFRCRE-NRI 219

Query: 346 GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLIS 405
             IP +  +L     I    N  S S    + S +  +    H               + 
Sbjct: 220 THIPENILSLDPTCTIILEDNPLS-SRIRESLSQQT-AQPDYHGPRIYFSMSDGQQNTLH 277

Query: 406 LQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLRE 457
             + D             +             N F   L++  +  S     
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS 329

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (288), Expect = 8e-28
 Identities = 50/332 (15%), Positives = 104/332 (31%), Gaps = 41/332 (12%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
               + F  +       + + Q +       +        +     +         +   
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTGRA 67

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV 573
                        P    L+L S  + +FP+     ++L H+ +    +  E+P+     
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 574 GDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENK 633
               L  L L+ N L A      +L    L  L + +                      +
Sbjct: 127 A--GLETLTLARNPLRALPASIASLNR--LRELSIRAC--------------------PE 162

Query: 634 FTTNIPYNIGNYINYAVFFSLAS--------NNLSGGIPLSLCNAFDLQVLDLSDNHLTG 685
            T  +P  + +         L +          +   +P S+ N  +L+ L + ++ L+ 
Sbjct: 163 LTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS- 219

Query: 686 SIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSL 745
           ++   +     L+ L LR    L   P + G    L+ L L       +LP  + + T L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 746 EVLDVGKNQLNGSFPFWLETLPQLRVLVLQSN 777
           E LD+         P  +  LP   ++++  +
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  114 bits (287), Expect = 1e-27
 Identities = 60/276 (21%), Positives = 85/276 (30%), Gaps = 57/276 (20%)

Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
              F L  LQH+ +    L     P    +   L  L L+ +     +P  I+SL  L  
Sbjct: 98  DQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154

Query: 161 LDLSA-SGLVA-PIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILS 218
           L + A   L   P  L   +     + L NL+ L L                     I S
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-----------------EWTGIRS 197

Query: 219 LPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE 278
           LP          S++ LQ L  L +  + LS+ +   + +   L+ L L  C      P 
Sbjct: 198 LPA---------SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 279 KIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLE 338
                  L  L +   SNL                          LP  I+ L  LE L+
Sbjct: 248 IFGGRAPLKRLILKDCSNLL------------------------TLPLDIHRLTQLEKLD 283

Query: 339 LSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS 374
           L  C     +PS    L     I     +    L  
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (278), Expect = 2e-26
 Identities = 53/344 (15%), Positives = 103/344 (29%), Gaps = 78/344 (22%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
                +      + +    +    Q       +L ++              L L      
Sbjct: 35  WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
              P +   L  L  + + A+GL+         L   ++    LE L L           
Sbjct: 95  -QFPDQAFRLSHLQHMTIDAAGLME--------LPDTMQQFAGLETLTL----------- 134

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFS----- 260
                 +   + +LP          S++ L  L  L++      +E+P+ L +       
Sbjct: 135 ------ARNPLRALPA---------SIASLNRLRELSIRACPELTELPEPLASTDASGEH 179

Query: 261 ----SLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPS----SQLKV 312
               +LQ L L   G+   +P  I  + +L  L + ++      L    P+     +L+ 
Sbjct: 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-----LSALGPAIHHLPKLEE 233

Query: 313 IELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSL 372
           ++L         P      A L+ L L DC+   ++P     LT+L  +D         L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 373 PSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSL 416
           P               +            QL +  ++ +  +  
Sbjct: 294 P---------------SLIA---------QLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (267), Expect = 4e-25
 Identities = 61/396 (15%), Positives = 110/396 (27%), Gaps = 82/396 (20%)

Query: 177 ANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQ 236
            +      + +  E LY  G         P   +LS  +     D +         +   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGS----TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSN 56

Query: 237 LLTHLNLDGNDLSSEVPDFLTNFSS--LQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSN 294
                   G  L     D L + +      L L    L  + P++ F +  L  + + + 
Sbjct: 57  NPQIETRTGRAL-KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAA 114

Query: 295 SNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGN 354
             L                         +LPD++   A LE L L+      ++P+S  +
Sbjct: 115 G-LM------------------------ELPDTMQQFAGLETLTLARNP-LRALPASIAS 148

Query: 355 LTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
           L  L  +          LP                    T        L++LQ L L   
Sbjct: 149 LNRLRELSIRACPELTELP---------------EPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 415 SLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQ-NKLQGLVPESI 473
            ++  +P S+   Q+++SL +  +          +     L E+D      L+   P   
Sbjct: 194 GIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLP--KLEELDLRGCTALRNY-PPIF 249

Query: 474 FQIKGLNVLRLSSNKFSGFITL-EMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTL 532
                L  L L     S  +TL      L QL  L+L                       
Sbjct: 250 GGRAPLKRLILKDC--SNLLTLPLDIHRLTQLEKLDLRGCV------------------- 288

Query: 533 KLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPN 568
                 ++  P+ +        + +  +       +
Sbjct: 289 -----NLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  104 bits (262), Expect = 2e-24
 Identities = 63/420 (15%), Positives = 107/420 (25%), Gaps = 103/420 (24%)

Query: 322 GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKV 381
           G      ++ +  E+L                      N D +R + +    +   SN  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNP 58

Query: 382 ISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
                   +   T  L           L+LR+  L    P                    
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA----------------- 100

Query: 442 GQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITL-EMFKD 500
            +L          L+ M      L  L P+++ Q  GL  L L+ N       L      
Sbjct: 101 FRLS--------HLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLR---ALPASIAS 148

Query: 501 LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNN 560
           L +L  L +                            ++TE P  L +           N
Sbjct: 149 LNRLRELSIRACP------------------------ELTELPEPLASTDASGEHQGLVN 184

Query: 561 RIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP 620
                            L  L L    + +      NL +  L  L + ++ L       
Sbjct: 185 -----------------LQSLRLEWTGIRSLPASIANLQN--LKSLKIRNSPL------- 218

Query: 621 PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSD 680
                          + +   I +         L         P        L+ L L D
Sbjct: 219 ---------------SALGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 681 -NHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL 739
            ++L  ++P  +     L+ L LR    L  +P +I    +   + +   HL   L +  
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 4e-24
 Identities = 48/369 (13%), Positives = 98/369 (26%), Gaps = 67/369 (18%)

Query: 229 HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCF 288
           H          +L   G+       D L+ +        +            +   +   
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-------HSAWRQANSNN 57

Query: 289 LDVSSNSNLTGSLPEFPPS------SQLKVIELSETRFSGKLPDSINNLALLEDLELSDC 342
             + + +    +L                 +EL       + PD    L+ L+ + +   
Sbjct: 58  PQIETRTGR--ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA 114

Query: 343 NFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ 402
                +P +      L  +  +RN                            +P S    
Sbjct: 115 G-LMELPDTMQQFAGLETLTLARNPLR------------------------ALPASIA-S 148

Query: 403 LISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFS 461
           L  L+ L +R       +P+ L                    +       L +L+ +   
Sbjct: 149 LNRLRELSIRACPELTELPEPL-----------------ASTDASGEHQGLVNLQSLRLE 191

Query: 462 QNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGS 521
              ++ L P SI  ++ L  L++ ++  S          L +L  L+L       N    
Sbjct: 192 WTGIRSL-PASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 522 NSNMFPKIGTLKLSSC-KITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
                  +  L L  C  +   P  +   T L  LDL        +P+    +       
Sbjct: 249 FGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL--PANCI 305

Query: 581 LNLSHNMLE 589
           + +  ++  
Sbjct: 306 ILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 6e-24
 Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 29/263 (11%)

Query: 531 TLKLSSC-KITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLE 589
            L       +  + + L      ++ D +         N               +   L+
Sbjct: 16  NLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN------NPQIETRTGRALK 69

Query: 590 AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA-----SIIFLDYSENKFTTNIPYNIGN 644
           A      + T      L+L S  L      P        +  +          +P  +  
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQ---FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQ 125

Query: 645 YINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-------- 696
           +       +LA N L   +P S+ +   L+ L +        +P  L S++         
Sbjct: 126 FAGLETL-TLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 697 -LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
            L+ L+L     + ++P  I N  +L++L +  + L+ +L  ++     LE LD+     
Sbjct: 184 NLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 756 NGSFPFWLETLPQLRVLVLQSNN 778
             ++P        L+ L+L+  +
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 51/295 (17%), Positives = 99/295 (33%), Gaps = 39/295 (13%)

Query: 664 PLSLCNAFDLQVLDLSDNHLTGSIPSCL--VSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
                N+ + Q+   +   L  +    L   +      L+LR+   L   P        L
Sbjct: 49  AWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHL 106

Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY-- 779
           + + +    L   LP ++ +   LE L + +N L  + P  + +L +LR L +++     
Sbjct: 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164

Query: 780 -----DGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILK 834
                  S   +        LQ + +       +LPA    S   ++           LK
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA----SIANLQN----------LK 209

Query: 835 FVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVL 894
            + +  S L            L   +   L     +D+         P + G    L  L
Sbjct: 210 SLKIRNSPL----------SALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 895 NMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
            + + +    +P  +  L +L  LDL       ++P  +A L    ++ +  +L 
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 2e-18
 Identities = 47/307 (15%), Positives = 87/307 (28%), Gaps = 37/307 (12%)

Query: 654 LASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ 713
              +         L         D +  H      +    SN  ++        L     
Sbjct: 19  FQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGRA-LKATAD 73

Query: 714 VIGN--ECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRV 771
           ++ +  +     L+L    L    P    + + L+ + +    L    P  ++    L  
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLET 131

Query: 772 LVLQSNNYD---GSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQ 828
           L L  N       SI           L+ + I +      LP             + E Q
Sbjct: 132 LTLARNPLRALPASIASLNR------LRELSIRACPELTELPEP-----LASTDASGEHQ 180

Query: 829 ESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDF 888
               L+ + LE + +          + L   +A  L    S+ + N+     +   +   
Sbjct: 181 GLVNLQSLRLEWTGI----------RSLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 889 DALLVLNMSNNNFKGQIPATLGNLKELGSLDLSH-NQLSGKIPEKLATLNFLSVLKLSQN 947
             L  L++         P   G    L  L L   + L   +P  +  L  L  L L   
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGC 287

Query: 948 LLVGEIP 954
           + +  +P
Sbjct: 288 VNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 5e-17
 Identities = 49/218 (22%), Positives = 75/218 (34%), Gaps = 23/218 (10%)

Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY---------SGFSGHIPLE 151
            ++     L+ L LA N L +   P+    L  L  L++              S     E
Sbjct: 121 DTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 152 ISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSIL 211
              L  L SL L  +G+ +        L   + NL NL+ L +    +S    GP +  L
Sbjct: 179 HQGLVNLQSLRLEWTGIRS--------LPASIANLQNLKSLKIRNSPLSAL--GPAIHHL 228

Query: 212 SNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG 271
             L  L L  C               L  L L        +P  +   + L+ L L  C 
Sbjct: 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

Query: 272 LYGRVPEKIFLMPSLCFLDVSSN--SNLTGSLPEFPPS 307
              R+P  I  +P+ C + V  +  + L    P   P+
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 8e-13
 Identities = 43/202 (21%), Positives = 72/202 (35%), Gaps = 34/202 (16%)

Query: 101 SSLFDLQRLQHLNLADN--------SLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI 152
           +S+  L RL+ L++            L S+        L +L  L L ++G    +P  I
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 153 SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGI--------DISGADW 204
           ++L+ L SL +  S L A        L   + +L  LEEL L G            G   
Sbjct: 203 ANLQNLKSLKIRNSPLSA--------LGPAIHHLPKLEELDLRGCTALRNYPPIFGG--- 251

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
                  + L+ L L DC     +   + +L  L  L+L G    S +P  +    +   
Sbjct: 252 ------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 265 LHLSLCGLYGRVPEKIFLMPSL 286
           + +           +    P+ 
Sbjct: 306 ILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 30/251 (11%), Positives = 70/251 (27%), Gaps = 42/251 (16%)

Query: 708 LGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLP 767
           +G+      +      L    +         LS+       D  +               
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 768 QLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKES 827
             ++          +    + A        +++ S       P + F+    +       
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPG-RVALELRSVPLP-QFPDQAFR----LSH----- 105

Query: 828 QESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGD 887
                L+ + ++ + L            L   + +      ++ ++ N     +P  +  
Sbjct: 106 -----LQHMTIDAAGL----------MELPDTMQQ-FAGLETLTLARNPLR-ALPASIAS 148

Query: 888 FDALLVLNMSNNNFKGQIPATLGN---------LKELGSLDLSHNQLSGKIPEKLATLNF 938
            + L  L++       ++P  L +         L  L SL L    +   +P  +A L  
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 939 LSVLKLSQNLL 949
           L  LK+  + L
Sbjct: 208 LKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 46/278 (16%), Positives = 80/278 (28%), Gaps = 65/278 (23%)

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
            + L  + +  L     V+         D ++ H A     S     + ++       L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRALK 69

Query: 757 GSFPFWLE--TLPQLRVLVLQSNNYD---GSIKDTQTANAFALLQIIDISSNNFS----- 806
            +    LE  T P    L L+S                   + LQ + I +         
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLPQFPDQAFR------LSHLQHMTIDAAGLMELPDT 122

Query: 807 -GNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILT 865
                                      L+ + L  + L          + L   +A  L 
Sbjct: 123 MQQFAG---------------------LETLTLARNPL----------RALPASIAS-LN 150

Query: 866 IFTSIDVSNNQFEGEIPEMLGDFDA---------LLVLNMSNNNFKGQIPATLGNLKELG 916
               + +       E+PE L   DA         L  L +     +  +PA++ NL+ L 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 917 SLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIP 954
           SL + ++ LS  +   +  L  L  L L     +   P
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (296), Expect = 2e-27
 Identities = 68/335 (20%), Positives = 111/335 (33%), Gaps = 70/335 (20%)

Query: 444 LEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQ 503
           ++K +   +     ++  ++ L  L P+ +     +  L +  N  +    L       +
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTSLPAL-----PPE 82

Query: 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK 563
           L TLE+S N                         ++T  P        L         + 
Sbjct: 83  LRTLEVSGN-------------------------QLTSLPVLPPGLLELSIFSNPLTHLP 117

Query: 564 GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPAS 623
                         L  L +  N L +     P L       L +  N L  S P  P+ 
Sbjct: 118 ALPSG---------LCKLWIFGNQLTSLPVLPPGLQE-----LSVSDNQLA-SLPALPSE 162

Query: 624 IIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHL 683
           +  L    N+ T+ +P             S++ N L+  +P        L  L   +N L
Sbjct: 163 LCKLWAYNNQLTS-LPMLPSGLQE----LSVSDNQLA-SLPTLPSE---LYKLWAYNNRL 213

Query: 684 TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
           T S+P+       LK L +  N  L ++P +      L+ L +S N L  SLP      +
Sbjct: 214 T-SLPALPSG---LKELIVSGNR-LTSLPVLPSE---LKELMVSGNRLT-SLPMLP---S 261

Query: 744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
            L  L V +NQL    P  L  L     + L+ N 
Sbjct: 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 7e-24
 Identities = 88/475 (18%), Positives = 140/475 (29%), Gaps = 124/475 (26%)

Query: 531  TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
             L +    +T  P+ L    ++  L + +N +   +P         +L  L +S N L +
Sbjct: 44   VLNVGESGLTTLPDCL--PAHITTLVIPDNNLT-SLPALP-----PELRTLEVSGNQLTS 95

Query: 591  FEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAV 650
                 P L    L++       L       P+ +  L    N+ T+ +P           
Sbjct: 96   LPVLPPGLLE--LSIFSNPLTHLPAL----PSGLCKLWIFGNQLTS-LPVLPPG------ 142

Query: 651  FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT 710
                                  LQ L +SDN L  S+P+       L  L   NN+ L +
Sbjct: 143  ----------------------LQELSVSDNQLA-SLPALPSE---LCKLWAYNNQ-LTS 175

Query: 711  VPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLR 770
            +P +      L+ L +S N LA SLP   S+   L   +   N+L  S P        L+
Sbjct: 176  LPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLP---ALPSGLK 224

Query: 771  VLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES 830
             L++  N        T      + L+ + +S N  + +LP                    
Sbjct: 225  ELIVSGNRL------TSLPVLPSELKELMVSGNRLT-SLPM------------------- 258

Query: 831  QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA 890
                      S L                         S+ V  NQ    +PE L    +
Sbjct: 259  --------LPSGL------------------------LSLSVYRNQLT-RLPESLIHLSS 285

Query: 891  LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLV 950
               +N+  N        TL  L+E+ S       +        +       L L+    +
Sbjct: 286  ETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 951  GEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKDEEGSGSIFDW 1005
                 G          F        F L     + L   E   KD      I  W
Sbjct: 343  VPAREGEPAPADRWHMFGQEDNADAFSLF---LDRLSETENFIKDAGFKAQISSW 394

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 5e-23
 Identities = 70/409 (17%), Positives = 124/409 (30%), Gaps = 119/409 (29%)

Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
                L++  + +   +P+    +    +  L +  N L +     P L +     L++ 
Sbjct: 40  NGNAVLNVGESGLT-TLPD---CLPA-HITTLVIPDNNLTSLPALPPELRT-----LEVS 89

Query: 610 SNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCN 669
            N L  S P+ P  ++ L    N  T ++P                              
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLT-HLPALPSG------------------------- 122

Query: 670 AFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729
              L  L +  N LT S+P        L+ L + +N+ L ++P +      L  L    N
Sbjct: 123 ---LCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQ-LASLPALPSE---LCKLWAYNN 171

Query: 730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTA 789
            L  SLP      + L+ L V  NQL  S P     L +L     +  +           
Sbjct: 172 QLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG---- 222

Query: 790 NAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSV 849
                L+ + +S N  + +LP                              S L      
Sbjct: 223 -----LKELIVSGNRLT-SLPV---------------------------LPSEL------ 243

Query: 850 TLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATL 909
                               + VS N+    +P +      LL L++  N    ++P +L
Sbjct: 244 ------------------KELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESL 280

Query: 910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQ 958
            +L    +++L  N LS +  + L  +                    P+
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 3e-21
 Identities = 74/379 (19%), Positives = 122/379 (32%), Gaps = 59/379 (15%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGL 168
              LN+ ++ L +   P        +T L +  +  +  +P     L+   +L++S + L
Sbjct: 42  NAVLNVGESGLTT--LPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGNQL 93

Query: 169 VAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPI 228
                    +L  L   L  L         +         ++ S L  L +        +
Sbjct: 94  --------TSLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQ----L 133

Query: 229 HSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCF 288
            S       L  L++  N L+S +P   +    L   +  L  L    P        L  
Sbjct: 134 TSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSL----PMLP---SGLQE 185

Query: 289 LDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI 348
           L VS N  L  SLP  P  S+L  +     R +  LP   + L   ++L +S  N   S+
Sbjct: 186 LSVSDN-QLA-SLPTLP--SELYKLWAYNNRLT-SLPALPSGL---KELIVSG-NRLTSL 236

Query: 349 PSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQV 408
           P     L EL     S N  + SLP     + ++SL    N  T  +P S    L S   
Sbjct: 237 PVLPSELKEL---MVSGNRLT-SLP--MLPSGLLSLSVYRNQLT-RLPESLI-HLSSETT 288

Query: 409 LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL 468
           ++L  N L          + +      G               + +L            L
Sbjct: 289 VNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRAL-----HLAAADWL 342

Query: 469 VPESIFQIKGLNVLRLSSN 487
           VP    +    +   +   
Sbjct: 343 VPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.3 bits (242), Expect = 8e-21
 Identities = 58/334 (17%), Positives = 100/334 (29%), Gaps = 56/334 (16%)

Query: 282 LMPSLCFLDVSSNSNLTGSLPEFPPS--SQLKVIELSETRFSGKLPDSINNLALLEDLEL 339
           L      L+V  +      L   P    + +  + + +   +  LP     L     LE+
Sbjct: 38  LNNGNAVLNVGESG-----LTTLPDCLPAHITTLVIPDNNLT-SLPALPPEL---RTLEV 88

Query: 340 SDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSY 399
           S  N   S+P     L EL        +                L    N  T ++P   
Sbjct: 89  SG-NQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL------CKLWIFGNQLT-SLP--- 137

Query: 400 GDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMD 459
                 LQ L + +N L   +P        +  L    N    QL       S  L+E+ 
Sbjct: 138 -VLPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNN----QLTSLPMLPS-GLQELS 187

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVS 519
            S N+L  L P    ++  L              +         L  L +S N  +    
Sbjct: 188 VSDNQLASL-PTLPSELYKLWAYNNRLTSLPALPS--------GLKELIVSGNRLT---- 234

Query: 520 GSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
            S   +  ++  L +S  ++T  P      + L  L +  N++   +P    ++      
Sbjct: 235 -SLPVLPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLT-RLPESLIHL--SSET 287

Query: 580 HLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            +NL  N L              +     +S  +
Sbjct: 288 TVNLEGNPLSER----TLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 4e-16
 Identities = 55/293 (18%), Positives = 93/293 (31%), Gaps = 50/293 (17%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
              +  L + DN+L S P          L  L +S +  +  +P+    L  L       
Sbjct: 60  PAHITTLVIPDNNLTSLP-----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 166 SGLVAPIQ------LRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSL 219
           + L A         +    L  L      L+EL +    ++      + ++ S L  L  
Sbjct: 114 THLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-----LPALPSELCKLWA 168

Query: 220 PDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEK 279
            +      + S       L  L++  N L+S +P   +    L   +  L  L    P  
Sbjct: 169 YNNQ----LTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSL----PA- 218

Query: 280 IFLMPSLCFLDVSSN---------SNLT---------GSLPEFPPSSQLKVIELSETRFS 321
             L   L  L VS N         S L           SLP  P  S L  + +   + +
Sbjct: 219 --LPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLP--SGLLSLSVYRNQLT 274

Query: 322 GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS 374
            +LP+S+ +L+    + L           +   +T           F  +  S
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.1 bits (200), Expect = 9e-16
 Identities = 57/291 (19%), Positives = 91/291 (31%), Gaps = 71/291 (24%)

Query: 102 SLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSL 161
               L  L   +     L + P          L  L +  +  +  +P+    L+ L   
Sbjct: 99  LPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLT-SLPVLPPGLQEL--- 146

Query: 162 DLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPD 221
                       +    L  L    + L +L+                   N ++ SLP 
Sbjct: 147 -----------SVSDNQLASLPALPSELCKLW-----------------AYNNQLTSLPM 178

Query: 222 CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF 281
                      S LQ    L++  N L+S +P   +    L   +  L  L    P    
Sbjct: 179 ---------LPSGLQ---ELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSL----PA--- 218

Query: 282 LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSD 341
           L   L  L VS N  LT SLP  P  S+LK + +S  R +  LP   +    L  L +  
Sbjct: 219 LPSGLKELIVSGN-RLT-SLPVLP--SELKELMVSGNRLT-SLPMLPSG---LLSLSVYR 270

Query: 342 CNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFT 392
            N    +P S  +L+    ++   N  S       +  ++ S         
Sbjct: 271 -NQLTRLPESLIHLSSETTVNLEGNPLS-ERT-LQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 22/237 (9%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
              L  L   +N L S P          L  L++S +  +  +P   S L  L + +   
Sbjct: 160 PSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRL 213

Query: 166 SGLVAPIQ------LRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSL 219
           + L A         +    L  L    + L+EL + G  ++      +  + S L  LS+
Sbjct: 214 TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSV 268

Query: 220 PDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEK 279
               +   +  SL  L   T +NL+GN LS      L   +S       +     R    
Sbjct: 269 YRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII----RFDMA 323

Query: 280 IFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
               P        + ++      E  P+   +     +   +      ++ L+  E+
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETEN 380

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (291), Expect = 2e-27
 Identities = 66/330 (20%), Positives = 122/330 (36%), Gaps = 36/330 (10%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
              L+L  N + +   D   +F  L+ L L+   +   V    F  + +L  L + SN  
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN-R 91

Query: 297 LTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFG 353
           L   +P   F   S L  +++SE +    L     +L  L+ LE+ D N    I   +F 
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFS 149

Query: 354 NLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
            L  L  +   + N + S+P+               + +          L  L VL LR+
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPT--------------EALSH---------LHGLIVLRLRH 185

Query: 414 NSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESI 473
            ++  I   S      ++ L +    +   +        L+L  +  +   L  +   ++
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAV 244

Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK 533
             +  L  L LS N  S  I   M  +L +L  ++L     +     +   +   +  L 
Sbjct: 245 RHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLN 302

Query: 534 LSSCKITEFP-NFLRNQTNLFHLDLSNNRI 562
           +S  ++T    +   +  NL  L L +N +
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (262), Expect = 1e-23
 Identities = 70/336 (20%), Positives = 123/336 (36%), Gaps = 43/336 (12%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+  + I   +N          L+ L L +N + +   P  F+ LF+L  L L  +   
Sbjct: 37  LDLGKNRIKT-LN-QDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLK 93

Query: 146 GHIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADW 204
             IPL + + L  L  LD+S + +V  +       + + ++L NL+ L +G  D+     
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVI-LL------DYMFQDLYNLKSLEVGDNDLVYISH 145

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
               S L++L  L+L  C++      +LS L  L  L L   ++++           L+ 
Sbjct: 146 R-AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

Query: 265 LHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKL 324
           L +S       +        +L  L ++                 L  +           
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHC--------------NLTAVP---------- 240

Query: 325 PDSINNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSRNNFSGSLPS--FASSNKV 381
             ++ +L  L  L LS  N   +I       L  L  I       +  +    F   N +
Sbjct: 241 YLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYL 298

Query: 382 ISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQ 417
             L  + N  T T+  S    + +L+ L L +N L 
Sbjct: 299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 2e-23
 Identities = 75/364 (20%), Positives = 130/364 (35%), Gaps = 58/364 (15%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           VPE I       +L L  N+    +  + F     L  LEL+EN                
Sbjct: 26  VPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI--------------- 67

Query: 529 IGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNML 588
           +  ++         P    N  NL  L L +NR+K  IP   +  G   L  L++S N +
Sbjct: 68  VSAVE---------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFT-GLSNLTKLDISENKI 116

Query: 589 E-----AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA------SIIFLDYSENKFTTN 637
                  F+    +L +  L  L++  N L     I         S+  L   +   T+ 
Sbjct: 117 VILLDYMFQ----DLYN--LKSLEVGDNDLVY---ISHRAFSGLNSLEQLTLEKCNLTS- 166

Query: 638 IPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNIL 697
           IP    ++++  +   L   N++     S    + L+VL++S      ++    +    L
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 698 KVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNG 757
             L + +          + +   LR L+LS N ++      L +   L+ + +   QL  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 758 SFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL---LQIIDISSNNFSGNLPARWF 814
             P+    L  LRVL +  N        T   + F     L+ + + SN  + +    W 
Sbjct: 287 VEPYAFRGLNYLRVLNVSGNQL-----TTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341

Query: 815 QSWR 818
              R
Sbjct: 342 FRRR 345

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (251), Expect = 3e-22
 Identities = 65/326 (19%), Positives = 123/326 (37%), Gaps = 15/326 (4%)

Query: 172 IQLRRANLEKLVKNL-TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS 230
           +   R     + + + T    L LG   I   +     +   +L  L L +  V+     
Sbjct: 16  VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPG 74

Query: 231 SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFL 289
           + + L  L  L L  N L        T  S+L  L +S   +   + + +F  + +L  L
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSL 133

Query: 290 DVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS 347
           +V  N +L   +    F   + L+ + L +   +    +++++L  L  L L       +
Sbjct: 134 EVGDN-DLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNINA 190

Query: 348 IPS-SFGNLTELINIDFSRNNFSGSLPSFASSN-KVISLKFAHNSFTGTIPLSYGDQLIS 405
           I   SF  L  L  ++ S   +  ++         + SL   H + T  +P      L+ 
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVY 249

Query: 406 LQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNK 464
           L+ L+L  N +  I    L+    ++ + L   +    +   F+  + L  R ++ S N+
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL--RVLNVSGNQ 307

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFS 490
           L  L       +  L  L L SN  +
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.2 bits (232), Expect = 7e-20
 Identities = 82/425 (19%), Positives = 133/425 (31%), Gaps = 111/425 (26%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
            +     +    P  +   T    LDL  NRIK  +    +      L  L L+ N++ A
Sbjct: 15  AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIK-TLNQDEF-ASFPHLEELELNENIVSA 70

Query: 591 FEKPG--PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINY 648
            E PG   NL +  L  L L SN L+                               I  
Sbjct: 71  VE-PGAFNNLFN--LRTLGLRSNRLK------------------------------LIPL 97

Query: 649 AVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL 708
            VF  L++                L  LD+S+N +   +         LK L++ +N+ +
Sbjct: 98  GVFTGLSN----------------LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 709 GTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQ 768
               +      SL  L L + +L     ++LS    L VL +    +N    +  + L +
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 769 LRVLVLQSNNYDGSIKDTQTANAFAL--LQIIDISSNNFSGNLPARWFQSWRGMKKRTKE 826
           L+VL +          DT T N      L  + I+  N +  +P    +           
Sbjct: 202 LKVLEISHWP----YLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRH---------- 246

Query: 827 SQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLG 886
                        L  L                          +++S N        ML 
Sbjct: 247 -------------LVYL------------------------RFLNLSYNPISTIEGSMLH 269

Query: 887 DFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL-ATLNFLSVLKLS 945
           +   L  + +         P     L  L  L++S NQL+  + E +  ++  L  L L 
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328

Query: 946 QNLLV 950
            N L 
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 68.6 bits (168), Expect = 5e-12
 Identities = 48/285 (16%), Positives = 84/285 (29%), Gaps = 75/285 (26%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           + ++LDL  N +         S   L+ L+L  N      P    N  +LRTL L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
                   +  ++L  LD+ +N++     +  + L  L+ L +  +N             
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-GDN------------- 138

Query: 792 FALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTL 851
                ++ IS   FSG                                L++L        
Sbjct: 139 ----DLVYISHRAFSG--------------------------------LNSL-------- 154

Query: 852 MNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGN 911
                             + +          E L     L+VL + + N       +   
Sbjct: 155 ----------------EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 912 LKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
           L  L  L++SH      +         L+ L ++   L   +P  
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
           +V    K        I T    +D+  N+ +    +    F  L  L ++ N      P 
Sbjct: 15  AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 908 TLGNLKELGSLDLSHNQLSGKIPEK-LATLNFLSVLKLSQNLLVGEIPRG 956
              NL  L +L L  N+L   IP      L+ L+ L +S+N +V  +   
Sbjct: 75  AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDY 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (294), Expect = 3e-27
 Identities = 93/628 (14%), Positives = 196/628 (31%), Gaps = 66/628 (10%)

Query: 219 LPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE 278
            P       I S+L    +   +++D               ++ + +      +  ++P 
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPA 68

Query: 279 KIFL-MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDL 337
            +      +  L+++                Q++ I+            +      ++ L
Sbjct: 69  ALLDSFRQVELLNLNDL--------------QIEEID----------TYAFAYAHTIQKL 104

Query: 338 ELSDCNFFGSIPSS-FGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGT 394
            +   N    +P   F N+  L  +   RN+ S SLP   F ++ K+ +L  ++N+    
Sbjct: 105 YMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-R 161

Query: 395 IPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLS 454
           I         SLQ L L +N L  +    +    S+    +  N     L        ++
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYN----LLSTLAI--PIA 212

Query: 455 LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNF 514
           + E+D S N +  +    +     L +L+L  N  +         +   L  ++LS N  
Sbjct: 213 VEELDASHNSINVV-RGPVNV--ELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNEL 266

Query: 515 SFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVG 574
              +      M  ++  L +S+ ++     + +    L  LDLS+N +   +        
Sbjct: 267 EKIMYHPFVKM-QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF- 323

Query: 575 DGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQG-SFPIPPASIIFLDYSENK 633
             +L +L L HN +           +  L  L L  N     S      ++      +  
Sbjct: 324 -DRLENLYLDHNSIVTL--KLSTHHT--LKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 378

Query: 634 FTTNIPYNIGNYINYAVFFSLASNNLSGGIPLS--LCNAFDLQVLDLSDNHLTGSIPSCL 691
               I Y + + +          + L   I L+  +      Q    + + +        
Sbjct: 379 QHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH 438

Query: 692 VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751
             +    V    N +    V ++      L    + Q  L   L   +   T+L    + 
Sbjct: 439 YITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID--TNLRRYRLP 496

Query: 752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPA 811
           K+ L  S     +    L+            +++TQ     A  +  +            
Sbjct: 497 KDGLARSSDNLNKVFTHLK------ERQAFKLRETQARRTEADAKQKETEDLEQENIALE 550

Query: 812 RWFQSWRGMKKRTKESQESQILKFVYLE 839
           +   + R  +   ++    +  K   LE
Sbjct: 551 KQLDNKRAKQAELRQETSLKRQKVKQLE 578

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (251), Expect = 5e-22
 Identities = 75/474 (15%), Positives = 147/474 (31%), Gaps = 49/474 (10%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
            D+     T  +        L   + +   ++++   P  +  D    +  LNL+     
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIE 88

Query: 146 GHIPLEI-SSLKMLVSLDLS--------ASGLVAPIQLRRANL---------EKLVKNLT 187
             I     +    +  L +                  L    L           +  N  
Sbjct: 89  -EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 188 NLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGND 247
            L  L +   ++   +        ++L+ L L    +    H  LS +  L H N+  N 
Sbjct: 148 KLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLT---HVDLSLIPSLFHANVSYNL 203

Query: 248 LSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPS 307
           LS+     L    +++ L  S   +   V   +     L  L +  N NLT         
Sbjct: 204 LST-----LAIPIAVEELDASHNSI-NVVRGPVN--VELTILKLQHN-NLT-DTAWLLNY 253

Query: 308 SQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNN 367
             L  ++LS       +      +  LE L +S+ N   ++      +  L  +D S N+
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH 312

Query: 368 FSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTK 427
                 +    +++ +L   HNS   T+ L       +L+ L L +N       ++L+  
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDCNSLRALFRN 368

Query: 428 QSIESLLLGQNKFH-GQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSS 486
             +    +     H     + ++       +  +    LQ +   S+ +       R S+
Sbjct: 369 --VARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSA 426

Query: 487 NK-------FSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK 533
                     S +IT +    L+    LE   N     V    +    +   L+
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQ 480

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.8 bits (238), Expect = 2e-20
 Identities = 76/444 (17%), Positives = 142/444 (31%), Gaps = 121/444 (27%)

Query: 507 LELSENNFSFNVSGSNSNM-FPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKG 564
            ++  +  + +V     ++       +   +  + + P   L +   +  L+L++ +I+ 
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE- 88

Query: 565 EIPNWTWNVGDGKLVHLNLSHNMLEAF-EKPGPNLTSTVLAVLDLHSNMLQGSFPIPPAS 623
           EI  + +      +  L +  N +         N+    L VL L  N L          
Sbjct: 89  EIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPL--LTVLVLERNDL---------- 135

Query: 624 IIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHL 683
                       +++P  I        F +                   L  L +S+N+L
Sbjct: 136 ------------SSLPRGI--------FHNTPK----------------LTTLSMSNNNL 159

Query: 684 TGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCT 743
                    ++  L+ L+L +N  L  V   +    SL   ++S N L      +L+   
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHANVSYNLL-----STLAIPI 211

Query: 744 SLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSN 803
           ++E LD   N +N           +L +L LQ NN    + DT     +  L  +D+S N
Sbjct: 212 AVEELDASHNSIN-VVRG--PVNVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYN 264

Query: 804 NFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKI 863
                +    F                         +  L                    
Sbjct: 265 ELE-KIMYHPFVK-----------------------MQRL-------------------- 280

Query: 864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHN 923
                 + +SNN+    +         L VL++S+N+    +         L +L L HN
Sbjct: 281 ----ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334

Query: 924 QLSGKIPEKLATLNFLSVLKLSQN 947
            +   +   L+T + L  L LS N
Sbjct: 335 SIV-TLK--LSTHHTLKNLTLSHN 355

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 9e-18
 Identities = 65/377 (17%), Positives = 115/377 (30%), Gaps = 45/377 (11%)

Query: 576 GKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDL---HSNMLQGSFPIPPASIIFLDYSEN 632
           G     N+     E            V   + +     ++  G   I   +   + +  +
Sbjct: 2   GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 633 KFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLV 692
                +P  + +        +L    +      +   A  +Q L +  N +    P    
Sbjct: 62  TMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120

Query: 693 SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGK 752
           +  +L VL L  N+       +  N   L TL +S N+L      +    TSL+ L +  
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

Query: 753 NQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPAR 812
           N+L          +P L    +  N          T      ++ +D S N+ +  +   
Sbjct: 181 NRLT-HVDL--SLIPSLFHANVSYNLL-------STLAIPIAVEELDASHNSIN-VVRGP 229

Query: 813 WFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDV 872
                               L    L+L +    D+  L+N                +D+
Sbjct: 230 VNVE----------------LT--ILKLQHNNLTDTAWLLN----------YPGLVEVDL 261

Query: 873 SNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEK 932
           S N+ E  +         L  L +SNN     +      +  L  LDLSHN L   +   
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 933 LATLNFLSVLKLSQNLL 949
               + L  L L  N +
Sbjct: 320 QPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 50/367 (13%), Positives = 97/367 (26%), Gaps = 24/367 (6%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLS 164
              L  L L  N+L  +           L  ++LSY+     I       ++ L  L +S
Sbjct: 231 NVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYIS 286

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV 224
            + LV         L    + +  L+ L L    +   +          L  L L    +
Sbjct: 287 NNRLV--------ALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSI 336

Query: 225 AGPIHSSLSKLQLLTHLNLDGNDLS-SEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL- 282
                  LS    L +L L  ND   + +     N +                 E     
Sbjct: 337 V---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCC 393

Query: 283 -MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSD 341
                 +LD         S+ E    +Q +            L   I     +       
Sbjct: 394 KESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQ 453

Query: 342 CNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGD 401
                 +      + +L N    +      L +   +N +   +   +    +       
Sbjct: 454 LEA--EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN-LRRYRLPKDGLARSSDNLNKV 510

Query: 402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFS 461
                +    +    Q    ++   ++  E L         QL+  +   +   +E    
Sbjct: 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570

Query: 462 QNKLQGL 468
           + K++ L
Sbjct: 571 RQKVKQL 577

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 5e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
             +   N+        +L  F  + +LN+++   +            +  L +  N +  
Sbjct: 54  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 928 KIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
             P     +  L+VL L +N L   +PRG
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLS-SLPRG 141

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 1e-25
 Identities = 54/317 (17%), Positives = 116/317 (36%), Gaps = 54/317 (17%)

Query: 470 PESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKI 529
            E         + +++ +     +   + +    +  L+LS N  S  +S ++   F K+
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 530 GTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLE 589
             L LSS  + E  +   + + L  LDL+NN ++ E+           +  L+ ++N + 
Sbjct: 61  ELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQ-ELLVGP------SIETLHAANNNIS 112

Query: 590 AFEKP-GPNLTSTVLAVLDLHSNMLQGSFPIPPASI------IFLDYSENKFTTNIPYNI 642
                 G    +     + L +N +     +            +LD   N+  T      
Sbjct: 113 RVSCSRGQGKKN-----IYLANNKITM---LRDLDEGCRSRVQYLDLKLNEIDT------ 158

Query: 643 GNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKL 702
              +N+A   + +                 L+ L+L  N +   +   +V +  LK L L
Sbjct: 159 ---VNFAELAASSDT---------------LEHLNLQYNFIY-DVKGQVVFAK-LKTLDL 198

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN-GSFPF 761
            +N+ L  +     +   +  + L  N L   + K+L    +LE  D+  N  + G+   
Sbjct: 199 SSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 762 WLETLPQLRVLVLQSNN 778
           +     +++ +  Q+  
Sbjct: 257 FFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  104 bits (262), Expect = 2e-24
 Identities = 51/311 (16%), Positives = 109/311 (35%), Gaps = 26/311 (8%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
           +  R +   + D+SL  +   S     +++  L+LS +  S     +++    L  L+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV 224
           ++ L   + L          +L+ L  L L    +        L +  ++  L   + ++
Sbjct: 67  SNVLYETLDLE---------SLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI 111

Query: 225 AGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYG-RVPEKIFLM 283
           +     S S+ Q   ++ L  N ++          S +QYL L L  +      E     
Sbjct: 112 S---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 284 PSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCN 343
            +L  L++  N  +   +      ++LK ++LS  + +  +     + A +  + L + N
Sbjct: 169 DTLEHLNLQYN-FIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN-N 224

Query: 344 FFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQL 403
               I  +      L + D   N F         S        A  +       +  ++ 
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN--EEE 282

Query: 404 ISLQVLDLRNN 414
            ++  L     
Sbjct: 283 CTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 2e-24
 Identities = 46/348 (13%), Positives = 103/348 (29%), Gaps = 48/348 (13%)

Query: 300 SLPEFPPS-SQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTEL 358
           ++ E   + ++ K+ +++++     L     +   +++L+LS         +     T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 359 INIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQG 418
             ++ S N          S + + +L   +N     +         S++ L   NN++  
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHAANNNISR 113

Query: 419 IIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKG 478
           +                          + Q       + +  + NK+  L          
Sbjct: 114 V-----------------------SCSRGQG-----KKNIYLANNKITMLRDLDEGCRSR 145

Query: 479 LNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCK 538
           +  L L  N+       E+      L  L L  N             F K+ TL LSS K
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNK 202

Query: 539 ITEFPNFLRNQTNLFHLDLSNNRIK---GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPG 595
           +       ++   +  + L NN++      +           L H +L  N         
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ------NLEHFDLRGNGFHCGTLRD 256

Query: 596 PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIG 643
               +  +  +   +            ++  L +       ++P    
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 57/336 (16%), Positives = 109/336 (32%), Gaps = 34/336 (10%)

Query: 403 LISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQ 462
               ++  + ++SL+  +     +  +++ L L  N    Q+     A    L  ++ S 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN 522
           N L       +  +  L  L L++N       ++       + TL  + NN S      +
Sbjct: 68  NVLYET--LDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISR----VS 115

Query: 523 SNMFPKIGTLKLSSCKITEFPNF-LRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
            +       + L++ KIT   +     ++ + +LDL  N I   +           L HL
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHL 174

Query: 582 NLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA-----SIIFLDYSENKFTT 636
           NL +N +   +          L  LDL SN L     + P       + ++    NK   
Sbjct: 175 NLQYNFIYDVK-GQVVFAK--LKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVL 228

Query: 637 NIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI 696
            I   +    N   F  L  N       L    + + +V  ++   +   +         
Sbjct: 229 -IEKALRFSQNLEHF-DLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECT 284

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA 732
           +  L          +P         R + L  +H  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 50/334 (14%), Positives = 111/334 (33%), Gaps = 41/334 (12%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
            +  +I  + D  +   + S       +  L+L GN LS      L  F+ L+ L+LS  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 271 GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINN 330
            L       +  + +L  LD+++N      + E      ++ +  +    S ++  S   
Sbjct: 69  VL--YETLDLESLSTLRTLDLNNN-----YVQELLVGPSIETLHAANNNIS-RVSCSR-- 118

Query: 331 LALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNS 390
               +++ L++           G  + +  +D   N                        
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---------------TVNFAE 163

Query: 391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA 450
                         +L+ L+L+ N +  +  + +     +++L L  NK      +FQ+A
Sbjct: 164 LAA--------SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSA 213

Query: 451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
           +   +  +    NKL  +  +++   + L    L  N F      + F   +++ T+   
Sbjct: 214 A--GVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 511 ENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN 544
                  ++G N             +    + P 
Sbjct: 271 TVK---KLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 49/291 (16%), Positives = 97/291 (33%), Gaps = 45/291 (15%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
            I     N    ++  ++D+ L  ++ S   S+  +K L L  N         +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDG 781
             L+LS N L       L   ++L  LD+  N +       L   P +  L   +NN   
Sbjct: 61  ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN--- 110

Query: 782 SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELS 841
            I      +     + I +++N  +  L          ++               YL+L 
Sbjct: 111 -ISRVS-CSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQ---------------YLDLK 152

Query: 842 NLYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQFEGEIPEMLGDFDALLVLNMSN 898
                      N+  ++  A++     +   +++  N    ++   +  F  L  L++S+
Sbjct: 153 L----------NEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSS 200

Query: 899 NNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
           N     +     +   +  + L +N+L   I + L     L    L  N  
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.6 bits (228), Expect = 5e-20
 Identities = 53/326 (16%), Positives = 109/326 (33%), Gaps = 72/326 (22%)

Query: 496 EMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFH 554
           E+ ++  +    ++++++    ++    +    +  L LS   +++     L   T L  
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSA-WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 555 LDLSNNRIKG--EIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNM 612
           L+LS+N +    ++ + +       L  L+L++N ++     GP++ +     L   +N 
Sbjct: 63  LNLSSNVLYETLDLESLS------TLRTLDLNNNYVQELL-VGPSIET-----LHAANNN 110

Query: 613 LQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFD 672
           +                      + +  + G          LA+N ++    L       
Sbjct: 111 I----------------------SRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSR 145

Query: 673 LQVLDLSDNHLTG-SIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           +Q LDL  N +   +      SS+ L+ L L+ N  +  V   +     L+TLDLS N L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFA-KLKTLDLSSNKL 203

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
           A  +         +  + +  N+L       L     L                      
Sbjct: 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF------------------- 242

Query: 792 FALLQIIDISSNNFSGNLPARWFQSW 817
                  D+  N F       +F   
Sbjct: 243 -------DLRGNGFHCGTLRDFFSKN 261

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 47/298 (15%), Positives = 99/298 (33%), Gaps = 44/298 (14%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
            +  ++L   +     +A++++ LDLS N L+    + L     L++L L +N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YET 73

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
             + +  +LRTLDL+ N++     + L    S+E L    N ++             + +
Sbjct: 74  LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNI 125

Query: 773 VLQSNNYDGSIKDTQTANAFAL--LQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES 830
            L +N     I   +  +      +Q +D+  N       A    S   ++         
Sbjct: 126 YLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE--------- 172

Query: 831 QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDA 890
                 +L L            N    ++   +     ++D+S+N+    +         
Sbjct: 173 ------HLNLQY----------NFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 891 LLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL-ATLNFLSVLKLSQN 947
           +  +++ NN     I   L   + L   DL  N           +    +  +     
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 16/211 (7%)

Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
             L     ++ L+ A+N++          R     ++ L+ +  +    L+      +  
Sbjct: 93  QELLVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 161 LDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLP 220
           LDL  +      ++   N  +L  +   LE L L    I          + + L+ L L 
Sbjct: 149 LDLKLN------EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLS 199

Query: 221 DCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKI 280
              +A  +         +T ++L  N L   +   L    +L++  L   G +       
Sbjct: 200 SNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 281 FL-MPSLCFLDVSSNSNLTGSLPEFPPSSQL 310
           F     +  +   +   LTG   E      L
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 859 ELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSL 918
           E+ +    +    V+++  +  +  +      +  L++S N       A L    +L  L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 919 DLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQ 958
           +LS N L  +  + L +L+ L  L L+ N +  E+  GP 
Sbjct: 64  NLSSNVLY-ETLD-LESLSTLRTLDLNNNYV-QELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 14/182 (7%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD+  + I   +N +        L+HLNL  N +Y             L  L+LS +  +
Sbjct: 149 LDLKLNEIDT-VNFAELAASSDTLEHLNLQYNFIYDVK-GQVV--FAKLKTLDLSSNKLA 204

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
             +  E  S   +  + L  + LV         +EK ++   NLE   L G         
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLV--------LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 206 PILSILSNLRILSLPD-CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
              S    ++ ++      + G      +   L  +      DL +   D L       +
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

Query: 265 LH 266
            H
Sbjct: 316 HH 317

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (274), Expect = 5e-25
 Identities = 90/501 (17%), Positives = 181/501 (36%), Gaps = 40/501 (7%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
           S + L   +P+        ++ +S+   S      I +L+ L  L +S         S F
Sbjct: 8   SKNGLI-HVPKDLSQK-TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65

Query: 353 GNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLR 412
               EL  +D S N     +     +  +  L  + N+F           +  L+ L L 
Sbjct: 66  KFNQELEYLDLSHNKLV-KIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 413 NNSLQGIIPKSLYTKQSIESLLLGQNKF--HGQLEKFQNASSLSLREMDFSQNKLQGLVP 470
              L+      +      + LL+    +      E  Q+ ++ SL  +  +  +   ++ 
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 471 ESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIG 530
            S+  +  L +  +         +  +    +     +LS  N + N   +  N F +I 
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS--NLTLNNIETTWNSFIRIL 241

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
            L                 T +++  +SN +++G++    ++     L  L++   + + 
Sbjct: 242 QLV--------------WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 591 FEKPGPNL--TSTVLAVLDLHSNMLQGSFPIPPASII----FLDYSENKFTTNIPYNIGN 644
           F  P   +    + + + +   +  +    +   S I     LD+S N  T  +  N G+
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 645 YINYAVFFSLASNNLSGGIPLSLCNAFD----LQVLDLSDNHLTGSIPSCLVSSNI-LKV 699
                    L  N L   +   +         LQ LD+S N ++        S    L  
Sbjct: 347 LTE-LETLILQMNQLK-ELS-KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403

Query: 700 LKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSF 759
           L + +N    T+ + +     ++ LDL  N +  S+PK + K  +L+ L+V  NQL    
Sbjct: 404 LNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 760 PFWLETLPQLRVLVLQSNNYD 780
               + L  L+ + L +N +D
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (272), Expect = 1e-24
 Identities = 65/422 (15%), Positives = 139/422 (32%), Gaps = 43/422 (10%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
              L+HL+L+ N+  + P    F  +  L  L LS +       L I+ L +   L +  
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 166 SGLVAPIQLRR-ANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV 224
                        +      ++          I          L + +   +L    C  
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 225 AGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNF---SSLQYLHLSLCGLYGRVPEKIF 281
              I + L     L++L L+  + +      +      +++ Y  +S   L G++  + F
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 282 -----LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
                 + +L    V S+         +   S + +   + +          + ++    
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 337 LELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS----FASSNKVISLKFAHNSFT 392
           L+ S+     ++  + G+LTEL  +    N     L            +  L  + NS +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 393 GTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASS 452
                       SL  L++ +N L   I + L  +                         
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR------------------------- 422

Query: 453 LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN 512
             ++ +D   NK++ + P+ + +++ L  L ++SN+    +   +F  L  L  + L  N
Sbjct: 423 --IKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 513 NF 514
            +
Sbjct: 479 PW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (270), Expect = 1e-24
 Identities = 89/511 (17%), Positives = 177/511 (34%), Gaps = 68/511 (13%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L+IS ++I+     +S +  L +L+ L ++ N +      S F     L +L+LS++   
Sbjct: 26  LNISQNYISEL--WTSDILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHNKLV 82

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
               +       L  LDLS +            + K   N++ L+ L L    +  +   
Sbjct: 83  K---ISCHPTVNLKHLDLSFN------AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYL 265
           PI  +  +  +L L + +           LQ     +L     +++   F+ + S     
Sbjct: 134 PIAHLNISKVLLVLGETYGE---KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLP 325
           +L L  +              C L+ +  S     L +   + +L  + L+    +    
Sbjct: 191 NLELSNIK-------------CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 326 DSINNLAL---LEDLELSDCNFFGSIPS-----SFGNLTELINIDFSRNNFSGSLPSFAS 377
             I  L     +    +S+    G +       S  +L  L       + F         
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 378 SNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQ 437
               +++K    S T  + +    ++     LD  NN L   + ++              
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN-------------- 343

Query: 438 NKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPES-IF-QIKGLNVLRLSSNKFSGFITL 495
                      + + L    +    N+L+ L   + +  Q+K L  L +S N  S     
Sbjct: 344 ---------CGHLTEL--ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 496 EMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHL 555
                 + L +L +S N  +  +      + P+I  L L S KI   P  +     L  L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRC---LPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449

Query: 556 DLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
           ++++N++K  +P+  ++     L  + L  N
Sbjct: 450 NVASNQLK-SVPDGIFD-RLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 98/519 (18%), Positives = 176/519 (33%), Gaps = 90/519 (17%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
            T LN+  N +S      + + S L+ L +S   +   +   +F     L +LD+S N  
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHN-- 79

Query: 297 LTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS--FGN 354
                       +L  I             S +    L+ L+LS  N F ++P    FGN
Sbjct: 80  ------------KLVKI-------------SCHPTVNLKHLDLSF-NAFDALPICKEFGN 113

Query: 355 LTELINIDFSRNNF-SGSLPSFASSNKVISLKFAHNSFTGTIPLSY--GDQLISLQVLDL 411
           +++L  +  S  +    S+   A  N    L     ++               SL ++  
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 412 RNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQN----------ASSLSLREMDFS 461
            N     I+  S+ T  ++E   +       +   F +           S+L+L  ++ +
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 462 QNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKD----LRQLGTLELSENNFSFN 517
            N    ++   +     +    +S+ K  G +    F      L+ L   ++  + F F 
Sbjct: 234 WNSFIRIL--QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 518 VSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG 576
            S     +F  +     +               +   HLD SNN +   +     ++   
Sbjct: 292 QSYI-YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL--T 348

Query: 577 KLVHLNLSHNMLEAFEK-PGPNLTSTVLAVLDLHSNMLQGSFPIP----PASIIFLDYSE 631
           +L  L L  N L+   K          L  LD+  N +             S++ L+ S 
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408

Query: 632 NKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCL 691
           N  T              +F  L                  ++VLDL  N +  SIP  +
Sbjct: 409 NILTDT------------IFRCLPPR---------------IKVLDLHSNKIK-SIPKQV 440

Query: 692 VSSNILKVLKLRNNEFLGTVPQ-VIGNECSLRTLDLSQN 729
           V    L+ L + +N+ L +VP  +     SL+ + L  N
Sbjct: 441 VKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.2 bits (242), Expect = 5e-21
 Identities = 73/490 (14%), Positives = 154/490 (31%), Gaps = 49/490 (10%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
               ++ SQN +  L    I  +  L +L +S N+    + + +FK  ++L  L+LS N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNK 80

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFP--NFLRNQTNLFHLDLSNNRIKGEIPNWTW 571
                   + +    +  L LS       P      N + L  L LS   ++        
Sbjct: 81  LV----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 572 NVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSE 631
           ++   K++ +       +   +   +  +  L ++   +        +   ++  L+ S 
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 632 NKFTTNI--------PYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFD---LQVLDLSD 680
            K                           +L +   +    + +        +    +S+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256

Query: 681 NHLTGSIPSCLVSSN-----ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSL 735
             L G +       +      L + ++ ++ F      +     ++   + + +      
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316

Query: 736 PKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALL 795
               SK +    LD   N L  +       L +L  L+LQ N      K  +       L
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376

Query: 796 QIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKG 855
           Q +DIS N+ S +         + +                 L +S+          N  
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLL---------------SLNMSS----------NIL 411

Query: 856 LSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKEL 915
                  +      +D+ +N+ +  IP+ +   +AL  LN+++N  K         L  L
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 916 GSLDLSHNQL 925
             + L  N  
Sbjct: 471 QKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 8e-12
 Identities = 74/435 (17%), Positives = 132/435 (30%), Gaps = 54/435 (12%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
            +  S   +   P  L        L++S N I     +   ++   KL  L +SHN ++ 
Sbjct: 4   LVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLS--KLRILIISHNRIQY 59

Query: 591 FEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAV 650
            +       +  L  LDL  N L      P  ++  LD S N F   +P           
Sbjct: 60  LD-ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDA-LPIC-------KE 110

Query: 651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT 710
           F +++                 L+ L LS  HL  S    +   NI KVL +    +   
Sbjct: 111 FGNMSQ----------------LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG-- 152

Query: 711 VPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLR 770
             +         T  L            +   +   V ++  + +         +     
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 771 VLVLQSNNY-------DGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKR 823
           +  LQ+N         +             L+    +   + S                +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV--------------K 258

Query: 824 TKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPE 883
            +   + +   +    L  L     V+ +       + +I +     + + +        
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 884 MLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS--GKIPEKLATLNFLSV 941
                   L L+ SNN     +    G+L EL +L L  NQL    KI E    +  L  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 942 LKLSQNLLVGEIPRG 956
           L +SQN +  +  +G
Sbjct: 379 LDISQNSVSYDEKKG 393

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 3e-11
 Identities = 54/366 (14%), Positives = 110/366 (30%), Gaps = 49/366 (13%)

Query: 625 IFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLT 684
             +D S+N     +P ++          +++ N +S      + +   L++L +S N + 
Sbjct: 3   FLVDRSKNGLIH-VPKDLSQKTTI---LNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 685 GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS--LSKC 742
               S    +  L+ L L +N+ L  +        +L+ LDLS N    +LP        
Sbjct: 59  YLDISVFKFNQELEYLDLSHNK-LVKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNM 114

Query: 743 TSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISS 802
           + L+ L +    L  S    +  L   +VL++    Y          +       I   +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 803 NNFSGNLPARWFQSW---------RGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMN 853
           N     +     ++            ++        S + K       +    +++    
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 854 KGLSMELAKI------------------------------LTIFTSIDVSNNQFEGEIPE 883
                 L  +                              L   +   V ++ F      
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 884 MLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLK 943
           +   F  + + N + +  +         +     LD S+N L+  + E    L  L  L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 944 LSQNLL 949
           L  N L
Sbjct: 355 LQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 846 QDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQI 905
           +  V     GL      +    T +++S N         +     L +L +S+N  +   
Sbjct: 2   EFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 906 PATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFT 963
            +     +EL  LDLSHN+L          L  L    LS N     +P   +F   +
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD---LSFNAF-DALPICKEFGNMS 115

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 1e-24
 Identities = 60/291 (20%), Positives = 104/291 (35%), Gaps = 28/291 (9%)

Query: 334 LEDLELSDCNFFGSIP-SSFGNLTELINIDFSRNNFSGSLP--SFASSNKVISLKFAHNS 390
              L+L + N    I    F NL  L  +    N  S  +   +FA   K+  L  + N 
Sbjct: 54  TALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH-GQLEK--F 447
               +P        +LQ L +  N +  +          +  + LG N      +E   F
Sbjct: 112 LK-ELP---EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTL 507
           Q    L    +  +   +   +P+ +     L  L L  NK +  +     K L  L  L
Sbjct: 168 QGMKKL--SYIRIADTNITT-IPQGLPP--SLTELHLDGNKIT-KVDAASLKGLNNLAKL 221

Query: 508 ELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK---- 563
            LS N+ S   +GS +N  P +  L L++ K+ + P  L +   +  + L NN I     
Sbjct: 222 GLSFNSISAVDNGSLANT-PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 564 GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPG---PNLTSTVLAVLDLHSN 611
            +     +N        ++L  N ++ +E        +     A + L + 
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV--RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 55/289 (19%), Positives = 100/289 (34%), Gaps = 27/289 (9%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
              L+L  N ++        N  +L  L L    +  ++    F  +  L  L +S N  
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKN-Q 111

Query: 297 LTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI---PSSFG 353
           L   LPE  P + L+ + + E   +       N L  +  +EL   N   S      +F 
Sbjct: 112 LK-ELPEKMPKT-LQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQ 168

Query: 354 NLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
            + +L  I  +  N + ++P     + +  L    N  T  +  +    L +L  L L  
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPS-LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSF 225

Query: 414 NSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA--SSLSLREMDFSQNKLQGLVPE 471
           NS+  +   SL     +  L L  N    +L K          ++ +    N +   +  
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNN----KLVKVPGGLADHKYIQVVYLHNNNISA-IGS 280

Query: 472 SIFQIKG-------LNVLRLSSNKFSGF-ITLEMFKDLRQLGTLELSEN 512
           + F   G        + + L SN    + I    F+ +     ++L   
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.7 bits (218), Expect = 9e-19
 Identities = 68/363 (18%), Positives = 125/363 (34%), Gaps = 78/363 (21%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
            LR +  S   L+  VP+ +       +L L +NK +  I    FK+L+ L TL L  N 
Sbjct: 32  HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 87

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV 573
            S    G+ + +  K+  L LS  ++ E P  +     L  L +  N I  ++    +N 
Sbjct: 88  ISKISPGAFAPL-VKLERLYLSKNQLKELPEKM--PKTLQELRVHENEIT-KVRKSVFN- 142

Query: 574 GDGKLVHLNLSHNMLEAFEKPG---PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYS 630
           G  +++ + L  N L++          +    L+ + +    +       P S+  L   
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIADTNITTIPQGLPPSLTELHLD 200

Query: 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC 690
            NK T          ++ A    L +                L  L LS N ++      
Sbjct: 201 GNKITK---------VDAASLKGLNN----------------LAKLGLSFNSIS------ 229

Query: 691 LVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV 750
                      + N     T          LR L L+ N L   +P  L+    ++V+ +
Sbjct: 230 ----------AVDNGSLANTP--------HLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 751 GKNQL----NGSF--PFWLETLPQLRVLVLQSNNYDGSIKDTQ-TANAFA---LLQIIDI 800
             N +    +  F  P +         + L SN     ++  +   + F    +   + +
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP----VQYWEIQPSTFRCVYVRAAVQL 326

Query: 801 SSN 803
            + 
Sbjct: 327 GNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 63/339 (18%), Positives = 107/339 (31%), Gaps = 70/339 (20%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLSASG 167
              L+L +N +        F  L +L  L L  +  S  I     + L  L  L LS   
Sbjct: 54  TALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS--- 108

Query: 168 LVAPIQLRRANLEKLVKNL-TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAG 226
                   +  L++L + +   L+EL                  +    I  +       
Sbjct: 109 --------KNQLKELPEKMPKTLQELR-----------------VHENEITKVRK----- 138

Query: 227 PIHSSLSKLQLLTHLNLDGNDLSSEV--PDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMP 284
              S  + L  +  + L  N L S             L Y+ ++   +   +P+ +   P
Sbjct: 139 ---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--P 192

Query: 285 SLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDC 342
           SL  L +  N  +T  +        + L  + LS    S     S+ N   L +L L++ 
Sbjct: 193 SLTELHLDGN-KIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN- 249

Query: 343 NFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ 402
           N    +P    +   +  +    NN S                   N F    P  Y  +
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNIS---------------AIGSNDF---CPPGYNTK 291

Query: 403 LISLQVLDLRNNSLQGI-IPKSLYTK-QSIESLLLGQNK 439
             S   + L +N +Q   I  S +       ++ LG  K
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 51/330 (15%), Positives = 101/330 (30%), Gaps = 69/330 (20%)

Query: 636 TNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSN 695
             +P ++           L +N ++        N  +L  L L +N ++   P       
Sbjct: 44  EKVPKDLPPDTAL---LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100

Query: 696 ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
            L+ L L  N+ L  +P+      +L+ L + +N +        +    + V+++G N L
Sbjct: 101 KLERLYLSKNQ-LKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 756 NGSF--PFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARW 813
             S       + + +L  + +   N    I           L  + +  N  +  + A  
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTN----ITTIP-QGLPPSLTELHLDGNKIT-KVDAAS 211

Query: 814 FQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVS 873
            +                        L+NL                          + +S
Sbjct: 212 LKG-----------------------LNNL------------------------AKLGLS 224

Query: 874 NNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG------ 927
            N         L +   L  L+++NN    ++P  L + K +  + L +N +S       
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 928 KIPEKLATLNFLSVLKLSQN-LLVGEIPRG 956
             P         S + L  N +   EI   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 66/283 (23%), Positives = 114/283 (40%), Gaps = 44/283 (15%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
            L+V+  SD  L   +P  L       +L L+NN+          N  +L TL L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
           +   P + +    LE L + KNQL    P   +    L+ L +  N     I   +  + 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENE----ITKVR-KSV 140

Query: 792 FA---LLQIIDISSNNF-SGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
           F     + ++++ +N   S  +    FQ   GMKK          L ++ +  +N+    
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKK----------LSYIRIADTNI---- 183

Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPE-MLGDFDALLVLNMSNNNFKGQIP 906
             T + +GL   L       T + +  N+   ++    L   + L  L +S N+      
Sbjct: 184 --TTIPQGLPPSL-------TELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 907 ATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
            +L N   L  L L++N+L  K+P  LA   ++ V+ L  N +
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 42/268 (15%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLF-SLTHLNLSYSGFSGHIPLEI-SSLKMLVSLD 162
            L +L+ L L+ N L   P     +++  +L  L +  +  +  +   + + L  ++ ++
Sbjct: 98  PLVKLERLYLSKNQLKELP-----EKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVE 151

Query: 163 LSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPD 221
           L  +       L+ + +E    + +  L  + +   +I+    G    +  +L  L L  
Sbjct: 152 LGTN------PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----LPPSLTELHLDG 201

Query: 222 CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF 281
             +     +SL  L  L  L L  N +S+     L N   L+ LHL+   L  +VP  + 
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260

Query: 282 LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSD 341
               +  + + +N               +  I  ++    G         A    + L  
Sbjct: 261 DHKYIQVVYLHNN--------------NISAIGSNDFCPPGYN----TKKASYSGVSLFS 302

Query: 342 CNF--FGSI-PSSFGNLTELINIDFSRN 366
            N   +  I PS+F  +     +     
Sbjct: 303 -NPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 42/209 (20%), Positives = 79/209 (37%), Gaps = 31/209 (14%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSG-FDRLFSLTHLNLSYSGFSGHIPLEI-SSLKM 157
            S    L ++  + L  N L SS   +G F  +  L+++ ++ +  +  IP  +  SL  
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTE 196

Query: 158 LVSLDLSASGLVAPIQLRRANLEKLV----KNLTNLEELYLGGIDISGADWGPILSILSN 213
           L               L    + K+     K L NL +L L    IS  D G  L+   +
Sbjct: 197 L--------------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-SLANTPH 241

Query: 214 LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSS------EVPDFLTNFSSLQYLHL 267
           LR L L +  +   +   L+  + +  + L  N++S+        P + T  +S   + L
Sbjct: 242 LRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 268 SLCGL-YGRVPEKIFL-MPSLCFLDVSSN 294
               + Y  +    F  +     + + + 
Sbjct: 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 50/258 (19%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           C LR +  S   L   +PK L       +LD+  N++        + L  L  L+L +N 
Sbjct: 31  CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 779 ----YDGSIKDTQT---------------ANAFALLQIIDISSNNFSGNLPARWFQSWRG 819
                 G+                           LQ + +  N  +  +    F     
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT-KVRKSVF----- 141

Query: 820 MKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEG 879
                     + + + + +EL     + S      G+     + +   + I +++     
Sbjct: 142 ----------NGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIRIADTNIT- 184

Query: 880 EIPEMLGDFDALLVLNMSNNNFKGQIPA-TLGNLKELGSLDLSHNQLSGKIPEKLATLNF 938
            IP+ L    +L  L++  N    ++ A +L  L  L  L LS N +S      LA    
Sbjct: 185 TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 939 LSVLKLSQNLLVGEIPRG 956
           L  L L+ N LV ++P G
Sbjct: 242 LRELHLNNNKLV-KVPGG 258

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (269), Expect = 1e-24
 Identities = 87/392 (22%), Positives = 141/392 (35%), Gaps = 55/392 (14%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
            +  +D S N +  L   S  +++ L  L++        I    F+ L  L  L+L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEF---PNFLRNQTNLFHLDLSNNRIKGEIPNWT 570
           F    +G+ + +   +  L L+ C +       NF +  T+L  L L +N IK +I   +
Sbjct: 91  FLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPAS 148

Query: 571 WNVGDGKLVHLNLSHNMLEAFEKPG-PNLTSTVLAVLDLHSNMLQGSFPIPPASIIF--- 626
           + +   +   L+L+ N +++  +    N       +L L S  LQ               
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 627 --------LDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF------- 671
                   LD S N F  ++     + I      SL  +N            F       
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 672 -------DLQVLDLSDNHLT---GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
                   ++  DLS + +     S+ S       L+ L L  NE              L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTD---LEQLTLAQNEINKIDDNAFWGLTHL 325

Query: 722 RTLDLSQNHLAGSLPK-SLSKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQS 776
             L+LSQN L GS+          LEVLD+  N +    + SF      LP L+ L L +
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSF----LGLPNLKELALDT 380

Query: 777 NNYDGSIKDTQTANAFALL---QIIDISSNNF 805
           N     +K +     F  L   Q I + +N +
Sbjct: 381 NQ----LK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.0 bits (247), Expect = 7e-22
 Identities = 78/382 (20%), Positives = 135/382 (35%), Gaps = 41/382 (10%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
           + +++L  N ++       +    LQ+L +        +    F  + SL  L +  N  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-Q 90

Query: 297 LTGSLPE--FPPSSQLKVIELSETRF-SGKLPDSI-NNLALLEDLELSDCNFFGSIP--S 350
               L    F   + L+V+ L++       L  +    L  LE L L D N    I   S
Sbjct: 91  FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPAS 148

Query: 351 SFGNLTELINIDFSRNNFS----GSLPSFASSN------KVISLKFAHNSFTGTIPLSYG 400
            F N+     +D + N         L +F   +        I+L+  +  + G       
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLL-------------LGQNKFHG-QLEK 446
            +  S+  LDL  N  +  + K  +   +   +               G   F       
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 447 FQNASSLSLREMDFSQNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEMFKDLRQLG 505
           F+   +  ++  D S++K+  L  +S+F     L  L L+ N+ +  I    F  L  L 
Sbjct: 269 FKGLEASGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL 326

Query: 506 TLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN-FLRNQTNLFHLDLSNNRIKG 564
            L LS+N      S    N+  K+  L LS   I    +       NL  L L  N++K 
Sbjct: 327 KLNLSQNFLGSIDSRMFENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK- 384

Query: 565 EIPNWTWNVGDGKLVHLNLSHN 586
            +P+  ++     L  + L  N
Sbjct: 385 SVPDGIFD-RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 1e-21
 Identities = 80/352 (22%), Positives = 127/352 (36%), Gaps = 39/352 (11%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-S 351
            N  L   +PE P    +  ++LS    +     S + L  L+ L++        I + +
Sbjct: 18  INRGLH-QVPELPAH--VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 352 FGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGT-IPLSYGDQLISLQV 408
           F  L+ LI +    N F   L +  F     +  L     +  G  +  ++   L SL++
Sbjct: 75  FRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 409 LDLRNNSLQGIIPKSLYTK-QSIESLLLGQNKFHGQLEK-FQNASSLSLREMDFSQNKLQ 466
           L LR+N+++ I P S +   +    L L  NK     E+   N        +  S   LQ
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 467 GLVPESI--------FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNV 518
            +    +        F+   +  L LS N F   +    F  +       L  +N     
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 519 SGSNSNMFPKIG-------------TLKLSSCKITEFPN-FLRNQTNLFHLDLSNNRIKG 564
           S      F                 T  LS  KI         + T+L  L L+ N I  
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN- 312

Query: 565 EIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGP--NLTSTVLAVLDLHSNMLQ 614
           +I +  +  G   L+ LNLS N L + +      NL    L VLDL  N ++
Sbjct: 313 KIDDNAFW-GLTHLLKLNLSQNFLGSID-SRMFENLDK--LEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.0 bits (239), Expect = 7e-21
 Identities = 78/420 (18%), Positives = 135/420 (32%), Gaps = 64/420 (15%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKML 158
            +S   LQ LQ L +   +       + F  L SL  L L Y+ F   +     + L  L
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANL 105

Query: 159 VSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRIL 217
             L L+         L  A L     K LT+LE L                  L +  I 
Sbjct: 106 EVLTLTQC------NLDGAVLSGNFFKPLTSLEMLV-----------------LRDNNIK 142

Query: 218 SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
            +          S    ++    L+L  N + S   + L NF    +  L L        
Sbjct: 143 KIQP-------ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS------- 188

Query: 278 EKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDL 337
                  S+   D++              ++ +  ++LS   F   +     +      +
Sbjct: 189 -------SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 338 ELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPL 397
           +    +   ++ SS          D     F G       ++ V +   + +     +  
Sbjct: 242 QSLILSNSYNMGSS---FGHTNFKDPDNFTFKG-----LEASGVKTCDLSKSKIF-ALLK 292

Query: 398 SYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK--FQNASSLSL 455
           S       L+ L L  N +  I   + +    +  L L QN   G ++   F+N     L
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLD--KL 349

Query: 456 REMDFSQNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNF 514
             +D S N ++ L  +  F  +  L  L L +N+    +   +F  L  L  + L  N +
Sbjct: 350 EVLDLSYNHIRAL-GDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 73/363 (20%), Positives = 121/363 (33%), Gaps = 44/363 (12%)

Query: 86  LDISSSFITGGINGSSSLFD-LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGF 144
           L +        I   ++ F  L  L  L L  N          F+ L +L  L L+    
Sbjct: 59  LKVEQQTPGLVI--RNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLANLEVLTLTQCNL 115

Query: 145 -SGHIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGG--IDIS 200
               +       L  L  L L  +       +++        N+     L L    +   
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDN------NIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 201 GAD-----WGPILSILS--NLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVP 253
             +      G   ++L   ++ +  + +  +      +  K   +T L+L GN     + 
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 254 ---DFLTNFSSLQYLHLSLCGLYGR-VPEKIFLMPSLCFLDVSSNSNLT---------GS 300
                    + +Q L LS     G       F  P          S +           +
Sbjct: 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289

Query: 301 LPE--FPPSSQLKVIELSETRFSGKLPDSI-NNLALLEDLELSDCNFFGSIPS-SFGNLT 356
           L +  F   + L+ + L++   + K+ D+    L  L  L LS  NF GSI S  F NL 
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLD 347

Query: 357 ELINIDFSRNNFSGSLP--SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
           +L  +D S N+   +L   SF     +  L    N    ++P    D+L SLQ + L  N
Sbjct: 348 KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

Query: 415 SLQ 417
              
Sbjct: 406 PWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 82/447 (18%), Positives = 131/447 (29%), Gaps = 112/447 (25%)

Query: 531 TLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLSHNM 587
            + LS   I E          +L  L +        I N   N   G   L+ L L +N 
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQ 90

Query: 588 LEAFEKPG--PNLTSTVLAVLDLHSNMLQGSFPIPP------ASIIFLDYSENKFTTNIP 639
               E  G    L +  L VL L    L     +         S+  L   +N      P
Sbjct: 91  FLQLE-TGAFNGLAN--LEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 640 YNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKV 699
                    + F ++                    VLDL+ N +       L++      
Sbjct: 147 A--------SFFLNMRR----------------FHVLDLTFNKVKSICEEDLLNFQGKHF 182

Query: 700 LKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSF 759
             LR                S+   D+++  L      +  K TS+  LD+  N    S 
Sbjct: 183 TLLRL--------------SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 760 P---FWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQS 816
               F      +++ L+L ++                          NF  +     F+ 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSY----------------NMGSSFGHTNFK-DPDNFTFKG 271

Query: 817 WRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKI---LTIFTSIDVS 873
                                LE S +    +  L    +   L  +    T    + ++
Sbjct: 272 ---------------------LEASGV---KTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307

Query: 874 NNQFEGEIPEMLGDFD---ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIP 930
            N+   +I +    F     LL LN+S N           NL +L  LDLS+N +   + 
Sbjct: 308 QNEIN-KIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LG 363

Query: 931 EKL-ATLNFLSVLKLSQNLLVGEIPRG 956
           ++    L  L  L L  N L   +P G
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 61/363 (16%), Positives = 125/363 (34%), Gaps = 69/363 (19%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L ++   + G +   +    L  L+ L L DN++      S F  +     L+L+++   
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN--- 164

Query: 146 GHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWG 205
                ++ S+                        E+ + N        L           
Sbjct: 165 -----KVKSIC-----------------------EEDLLNFQGKHFTLLR---------- 186

Query: 206 PILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVP---DFLTNFSSL 262
                LS++ +  + +  +      +  K   +T L+L GN     +          + +
Sbjct: 187 -----LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 263 QYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSG 322
           Q L LS                       ++  +      +   +S +K  +LS+++   
Sbjct: 242 QSLILSNSYN------------MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF- 288

Query: 323 KLPDSI-NNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSRNNFSGSLPS--FASS 378
            L  S+ ++   LE L L+  N    I   +F  LT L+ ++ S+N    S+ S  F + 
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENL 346

Query: 379 NKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQN 438
           +K+  L  ++N     +       L +L+ L L  N L+ +         S++ + L  N
Sbjct: 347 DKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

Query: 439 KFH 441
            + 
Sbjct: 406 PWD 408

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (253), Expect = 3e-23
 Identities = 58/288 (20%), Positives = 103/288 (35%), Gaps = 23/288 (7%)

Query: 334 LEDLELSDCNFFGSIP-SSFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNS 390
              L+L + N    +    F  L  L  +    N  S  +    F+   K+  L  + N 
Sbjct: 56  TTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNH 113

Query: 391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA 450
               IP    +   SL  L + +N ++ +        +++  + +G N       +    
Sbjct: 114 LV-EIP---PNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
             L L  +  S+ KL G +P+ + +   LN L L  NK    I LE      +L  L L 
Sbjct: 170 DGLKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLG 225

Query: 511 ENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK----GEI 566
            N      +GS S + P +  L L + K++  P  L +   L  + L  N I      + 
Sbjct: 226 HNQIRMIENGSLSFL-PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGP---NLTSTVLAVLDLHSN 611
               + V       ++L +N +  +E        +T      +   + 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD--RLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 62/306 (20%), Positives = 103/306 (33%), Gaps = 51/306 (16%)

Query: 523 SNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
             + P    L L +  I+E   +  +   +L+ L L NN+I  +I    ++    KL  L
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFS-PLRKLQKL 107

Query: 582 NLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA------SIIFLDYSENKFT 635
            +S N L       P    + L  L +H N ++    +P        ++  ++   N   
Sbjct: 108 YISKNHLVEI----PPNLPSSLVELRIHDNRIRK---VPKGVFSGLRNMNCIEMGGNPLE 160

Query: 636 TNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSN 695
            +             F  L                  L  L +S+  LT  IP  L  + 
Sbjct: 161 NS-------GFEPGAFDGLK-----------------LNYLRISEAKLT-GIPKDLPET- 194

Query: 696 ILKVLKLRNNEFLGTVPQVIGNEC-SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQ 754
            L  L L +N+ +  +          L  L L  N +      SLS   +L  L +  N+
Sbjct: 195 -LNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 755 LNGSFPFWLETLPQLRVLVLQSNN----YDGSIKDTQTANAFALLQIIDISSNNFS-GNL 809
           L+   P  L  L  L+V+ L +NN                  A    I + +N      +
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 810 PARWFQ 815
               F+
Sbjct: 312 QPATFR 317

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 26/288 (9%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
            T L+L  ND+S    D       L  L L    +  ++ EK F  +  L  L +S N +
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLYISKN-H 113

Query: 297 LTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI--PSSFGN 354
           L   +P   PSS L  + + + R         + L  +  +E+       S   P +F  
Sbjct: 114 LV-EIPPNLPSS-LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 355 LTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
           L  L  +  S    +  +P       +  L   HN     I L    +   L  L L +N
Sbjct: 172 LK-LNYLRISEAKLT-GIPKDLPET-LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHN 227

Query: 415 SLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA--SSLSLREMDFSQNKLQGLVPES 472
            ++ I   SL    ++  L L  N    +L +          L+ +    N +   V  +
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNN----KLSRVPAGLPDLKLLQVVYLHTNNITK-VGVN 282

Query: 473 IFQIKG-------LNVLRLSSNKFSGF-ITLEMFKDLRQLGTLELSEN 512
            F   G        N + L +N    + +    F+ +     ++    
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 53/295 (17%), Positives = 102/295 (34%), Gaps = 45/295 (15%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           D  +LDL +N ++            L  L L NN+      +       L+ L +S+NHL
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
              +P +L    SL  L +  N++          L  +  + +  N  + S  +     A
Sbjct: 115 V-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE---PGA 168

Query: 792 FAL--LQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSV 849
           F    L  + IS    +  +P    ++                L  ++L+ + +   +  
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDLPET----------------LNELHLDHNKIQAIELE 211

Query: 850 TLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATL 909
            L+            +    + + +NQ        L     L  L++ NN    ++PA L
Sbjct: 212 DLLR----------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 910 GNLKELGSLDLSHNQLSGKIPEK-------LATLNFLSVLKLSQNLL-VGEIPRG 956
            +LK L  + L  N ++ K+               + + + L  N +   E+   
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 31/279 (11%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159
                 LQ L  L L +N +        F  L  L  L +S +     IP  +     LV
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLV 126

Query: 160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSL 219
            L +  + +     + +         L N+  + +GG  +  + + P       L  L +
Sbjct: 127 ELRIHDNRIRK---VPKGVFS----GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179

Query: 220 PDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEK 279
            +  + G        L     L+LD N + +   + L  +S L  L L    +   +   
Sbjct: 180 SEAKLTGIPKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENG 235

Query: 280 IFL-MPSLCFLDVSSNSNLTGSLPE-FPPSSQLKVIELSETRFSGKLPDSI-------NN 330
               +P+L  L + +N  L+  +P   P    L+V+ L     + K+  +          
Sbjct: 236 SLSFLPTLRELHLDNN-KLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVK 292

Query: 331 LALLEDLELSDCNFFGSI---PSSFGNLTELINIDFSRN 366
            A    + L + N        P++F  +T+ + I F   
Sbjct: 293 RAYYNGISLFN-NPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 51/264 (19%), Positives = 92/264 (34%), Gaps = 53/264 (20%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           C LR +  S   L  ++PK +S      +LD+  N ++       + L  L  LVL +N 
Sbjct: 33  CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 779 ----YDGSIKDTQT---------------ANAFALLQIIDISSNNFSGNLPARWFQSWRG 819
               ++ +    +                 N  + L  + I  N     +P   F    G
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIR-KVPKGVFS---G 145

Query: 820 MKKRTKESQESQILKFVYLELSNLYYQDSVT------LMNKGLSMELAKILTI----FTS 869
           ++           +  + +   N              L    L +  AK+  I      +
Sbjct: 146 LRN----------MNCIEMG-GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194

Query: 870 I---DVSNNQFEGEIPE-MLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925
           +    + +N+ +  I    L  +  L  L + +N  +     +L  L  L  L L +N+L
Sbjct: 195 LNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253

Query: 926 SGKIPEKLATLNFLSVLKLSQNLL 949
           S ++P  L  L  L V+ L  N +
Sbjct: 254 S-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 51/336 (15%), Positives = 100/336 (29%), Gaps = 53/336 (15%)

Query: 603 LAVLDLHSNMLQGSFPIP-PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSG 661
           L V+      L+ + P         LD   N  +  +  +    + +     L +N +S 
Sbjct: 35  LRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISK 92

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSL 721
               +      LQ L +S NHL   IP  L SS  L  L++ +N        V     ++
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 722 RTLDLSQNHLA-GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
             +++  N L              L  L + + +L    P   +    L  L L  N   
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP--KDLPETLNELHLDHNK-- 204

Query: 781 GSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVY 837
             I+  +          L  + +  N     +          ++                
Sbjct: 205 --IQAIE-LEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLR---------------E 245

Query: 838 LELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPE-------MLGDFDA 890
           L L N    + ++ +  GL       L +   + +  N    ++                
Sbjct: 246 LHLDN----NKLSRVPAGLP-----DLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAY 295

Query: 891 LLVLNMSNNNFKGQI--PATLGNLKELGSLDLSHNQ 924
              +++ NN        PAT   + +  ++   + +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 46/229 (20%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159
                 L+ +  + +  N L +S F  G      L +L +S +  +  IP ++       
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL------- 191

Query: 160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSL 219
                                        L EL+L    I   +    L   S L  L L
Sbjct: 192 --------------------------PETLNELHLDHNKIQAIELE-DLLRYSKLYRLGL 224

Query: 220 PDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEK 279
               +    + SLS L  L  L+LD N LS  VP  L +   LQ ++L    +  +V   
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNI-TKVGVN 282

Query: 280 IF-------LMPSLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELSETR 319
            F              + + +N      +    F   +    I+    +
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 86/482 (17%), Positives = 163/482 (33%), Gaps = 64/482 (13%)

Query: 347 SIPSSFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLI 404
            +P           +  S+N+ S  L     +  +++  L+ +HN    ++         
Sbjct: 45  HVPK--DLPPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQ 100

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH--GQLEKFQNASSLSLREMDFSQ 462
            L+ LD+ +N LQ I    +    S+  L L  N F      ++F N +   L  +  S 
Sbjct: 101 DLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLT--KLTFLGLSA 155

Query: 463 NKLQGLVPESIFQIK------GLNVLRLSSNKFSGFITLE-----------------MFK 499
            K + L    +  +        L    +   +                         +  
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 500 DLRQLGTLELSENNFSFNVSGSNSNMFPKIGT-----------LKLSSCKITEFPNFLRN 548
            +  LG L+LS    +            ++             ++ +     +   F   
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W 274

Query: 549 QTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTS--TVLAVL 606
              + +L++ N  I   I    +   +  L  L + H   + F      L S    + + 
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 607 DLHSNMLQGSFPIPPASII----FLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLS-- 660
            L  +       +          FL++++N FT ++               L  N L   
Sbjct: 335 MLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNF 392

Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS-SNILKVLKLRNNEFLGTVPQVIGNEC 719
             + L   N   L+ LD+S N L         + +  + VL L +N   G+V + +    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-- 450

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSNN 778
            ++ LDL  N +  S+PK ++   +L+ L+V  NQL  S P    + L  L+ + L  N 
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

Query: 779 YD 780
           +D
Sbjct: 509 WD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.5 bits (240), Expect = 1e-20
 Identities = 76/467 (16%), Positives = 143/467 (30%), Gaps = 64/467 (13%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
           L  L+ L L+ N + S      F     L +L++S++    +I      +  L  LDLS 
Sbjct: 75  LSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSF 130

Query: 166 SGLVAPIQLRRANLEKLVKNLTNLEELYLGG-----IDISGADWGPILSILSNLRILSLP 220
           +            + K   NLT L  L L       +D+       +  IL +L    + 
Sbjct: 131 N------DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 221 DCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKI 280
                     + + L L+ H N   +  S +V   +     LQ  ++ L         + 
Sbjct: 185 GGETESLQIPNTTVLHLVFHPN---SLFSVQVNMSVNALGHLQLSNIKL----NDENCQR 237

Query: 281 FLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELS 340
            +          +  N+T    E      +K+ +                   +E L + 
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-------------FWPRPVEYLNIY 284

Query: 341 DCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYG 400
           +      I       +E         +                    +  F  +    Y 
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVK------------------NQVFLFSKEALY- 325

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMD 459
                + +  L  +    I      +  S   L   QN F      FQ  S+L  L+ + 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF--TDSVFQGCSTLKRLQTLI 383

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLE---MFKDLRQLGTLELSENNFSF 516
             +N L+    +     K ++ L       +   +            +  L LS N  + 
Sbjct: 384 LQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT- 441

Query: 517 NVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK 563
                   + PK+  L L + +I   P  + +   L  L++++N++K
Sbjct: 442 --GSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.5 bits (227), Expect = 4e-19
 Identities = 101/518 (19%), Positives = 166/518 (32%), Gaps = 79/518 (15%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLSASG 167
            + L+L+ NS+           L  L  L LS++     +   +    + L  LD+S + 
Sbjct: 54  TKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 168 LVA-PIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAG 226
           L                  + +L  L                  LS      LP C    
Sbjct: 112 LQNISCC-----------PMASLRHLD-----------------LSFNDFDVLPVC---- 139

Query: 227 PIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYG-RVPEKIFLMPS 285
                   L  LT L L            + +   L  + L L   +      +   +P+
Sbjct: 140 ---KEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPN 195

Query: 286 LCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFF 345
              L +  + N   S+      + L  ++LS  + + +    +           +  N  
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV- 254

Query: 346 GSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGD---- 401
                       L +I+ +       L  F     V  L   + + T  I          
Sbjct: 255 -----------TLQHIETTWKCSV-KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 402 QLISLQVLDLRNNSLQGIIPK--SLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMD 459
            L SL +  ++N           S++ + +I+ L +    F   +      S  S   ++
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF---IHMVCPPSPSSFTFLN 359

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKF-SGFITLEMFKDLRQLGTLELSENNFSFNV 518
           F+QN     V +    +K L  L L  N   + F    M K++  L TL++S N+ + + 
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419

Query: 519 SGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKL 578
                     I  L LSS  +T    F      +  LDL NNRI   IP          L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIM-SIPKDV--THLQAL 475

Query: 579 VHLNLSHNML-----EAFEKPGPNLTSTVLAVLDLHSN 611
             LN++ N L       F+     LTS  L  + LH N
Sbjct: 476 QELNVASNQLKSVPDGVFD----RLTS--LQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.8 bits (215), Expect = 1e-17
 Identities = 73/422 (17%), Positives = 145/422 (34%), Gaps = 45/422 (10%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA 165
           +  L+HL+L+ N     P    F  L  LT L LS + F   + L   +   L  + L  
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDL 178

Query: 166 SGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLP----D 221
                   ++    E L    T +  L      +        ++ L +L++ ++     +
Sbjct: 179 VSY----HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 222 CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNF---SSLQYLHLSLCGLYGRVPE 278
           C       S L++   L ++ L   + + +    L  F     ++YL++    +  R+  
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 279 KIF-----LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLAL 333
           + F      + SL    V +   L      +   +++ +  LS +           + + 
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS 354

Query: 334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTG 393
              L  +   F  S+      L  L  +   RN    +    A                 
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMT-------------- 399

Query: 394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYT-KQSIESLLLGQNKFHGQLEKFQNASS 452
                    + SL+ LD+  NSL            +SI  L L  N   G + +      
Sbjct: 400 -------KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLP 449

Query: 453 LSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN 512
             ++ +D   N++  + P+ +  ++ L  L ++SN+    +   +F  L  L  + L +N
Sbjct: 450 PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

Query: 513 NF 514
            +
Sbjct: 508 PW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.9 bits (210), Expect = 4e-17
 Identities = 89/487 (18%), Positives = 162/487 (33%), Gaps = 49/487 (10%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
             + +  SQN +  L    I  +  L VLRLS N+    +   +F   + L  L++S N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFP--NFLRNQTNLFHLDLSNNRIKGEIPNWTW 571
              N+S         +  L LS       P      N T L  L LS  + + ++     
Sbjct: 112 LQ-NISCCP---MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPV 166

Query: 572 NVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGS-FPIPPASIIFLDYS 630
                  + L+L    ++  E     + +T +  L  H N L      +   ++  L  S
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFD---------LQVLDLSDN 681
             K        +  +++         N     I  +   +           ++ L++ + 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 682 HLTGSIPSCLVSS-----NILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLP 736
            +T  I     +        L +  ++N  FL +   +      +    LS +       
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 737 KSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQ 796
                 +S   L+  +N    S      TL +L+ L+LQ N      K        + L+
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406

Query: 797 IIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGL 856
            +D+S N+ + +   R       +                 L LS+     SV    + L
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESIL---------------VLNLSSNMLTGSVF---RCL 448

Query: 857 SMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELG 916
             ++         +D+ NN+    IP+ +    AL  LN+++N  K         L  L 
Sbjct: 449 PPKV-------KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 917 SLDLSHN 923
            + L  N
Sbjct: 501 YIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 95/555 (17%), Positives = 173/555 (31%), Gaps = 134/555 (24%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
           LS LR+L L    +           Q L +L++  N L + +       +SL++L LS  
Sbjct: 75  LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHLDLS-- 129

Query: 271 GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP---EFPPSSQLKVIELSETRFSGKLPDS 327
                                    N    LP   EF   ++L  + LS  +F       
Sbjct: 130 ------------------------FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 328 INNLALLED-LELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKF 386
           + +L L    L+L   +  G    S       +       N   S+    S N +  L  
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL-- 223

Query: 387 AHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK 446
                          QL ++++ D     L   + +       +   L           K
Sbjct: 224 ---------------QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 447 -FQNASSLSLREMDFSQNKLQGLVPESIFQ-----IKGLNVLRLSSNKFSGFITLEMFKD 500
            FQ      +  ++     +   +    F      +K L +  + +  F  F    ++  
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSV 327

Query: 501 LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNN 560
             ++    LS ++  F                               + ++   L+ + N
Sbjct: 328 FAEMNIKMLSISDTPFIHMV------------------------CPPSPSSFTFLNFTQN 363

Query: 561 RIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP 620
                +      +   +L  L L  N L+ F K      +  ++ L+     L       
Sbjct: 364 VFTDSVFQGCSTL--KRLQTLILQRNGLKNFFKVALMTKN--MSSLETLDVSL------- 412

Query: 621 PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCN-AFDLQVLDLS 679
                                               N+L+       C  A  + VL+LS
Sbjct: 413 ------------------------------------NSLNSHAYDRTCAWAESILVLNLS 436

Query: 680 DNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK-S 738
            N LTGS+  CL     +KVL L NN  + ++P+ + +  +L+ L+++ N L  S+P   
Sbjct: 437 SNMLTGSVFRCLPPK--VKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGV 492

Query: 739 LSKCTSLEVLDVGKN 753
             + TSL+ + +  N
Sbjct: 493 FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 68/350 (19%), Positives = 118/350 (33%), Gaps = 32/350 (9%)

Query: 621 PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFD----LQVL 676
           P     L  S+N  +     +I           L+ N +   +       F     L+ L
Sbjct: 51  PPRTKALSLSQNSISELRMPDISFLSEL-RVLRLSHNRIRS-LDFH---VFLFNQDLEYL 105

Query: 677 DLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLG-TVPQVIGNECSLRTLDLSQNHL-AGS 734
           D+S N L  +I  C ++S  L+ L L  N+F    V +  GN   L  L LS        
Sbjct: 106 DVSHNRLQ-NISCCPMAS--LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 735 LPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL 794
           L        S  +LD+    + G     L+      + ++   N   S++   + NA   
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 795 LQIIDISSNNFSGNL---PARWFQSWRGMKKRTKESQE------SQILKFV------YLE 839
           LQ+ +I  N+ +                +   T +  E       ++ +F       YL 
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 840 LSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNN 899
           + NL   + +       S    K L I     V N  F      +   F  + +  +S +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIE---HVKNQVFLFSKEALYSVFAEMNIKMLSIS 339

Query: 900 NFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
           +          +      L+ + N  +  + +  +TL  L  L L +N L
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 15/271 (5%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCN--FFGSIPS 350
           ++  LT S+P   PSS    +EL   +         + L  L  L LS     F G    
Sbjct: 15  NSKGLT-SVPTGIPSS-ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 351 SFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLD 410
           S    T L  +D S N       +F    ++  L F H++       S    L +L  LD
Sbjct: 73  SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 411 LRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL--EKFQNASSLSLREMDFSQNKLQGL 468
           + +   +           S+E L +  N F      + F      +L  +D SQ +L+ L
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR--NLTFLDLSQCQLEQL 190

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
            P +   +  L VL +S N F   +    +K L  L  L+ S N+   +      +    
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 529 IGTLKLS------SCKITEFPNFLRNQTNLF 553
           +  L L+      +C+   F  ++++Q  L 
Sbjct: 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 65/298 (21%), Positives = 104/298 (34%), Gaps = 52/298 (17%)

Query: 523 SNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
           + +      L+L S K+   P       T L  L LS+N +  +      + G   L +L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 582 NLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYN 641
           +LS N +         L    L  LD   + L+    +   S                  
Sbjct: 84  DLSFNGVITMSSNFLGLEQ--LEHLDFQHSNLKQ---MSEFS------------------ 120

Query: 642 IGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLK 701
                   VF SL +                L  LD+S  H   +        + L+VLK
Sbjct: 121 --------VFLSLRN----------------LIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 702 LRNNEFLGTVPQVIGNECS-LRTLDLSQNHLAGSLPKSLSKC-TSLEVLDVGKNQLNGSF 759
           +  N F       I  E   L  LDLSQ  L   L  +     +SL+VL++  N      
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 760 PFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
            F  + L  L+VL    N+   + K  +  +  + L  ++++ N+F+     + F  W
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 58/260 (22%), Positives = 94/260 (36%), Gaps = 35/260 (13%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNL 297
            T L L+ N L S         + L  L LS  GL               F    S S  
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS--------------FKGCCSQS-- 73

Query: 298 TGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS--FGNL 355
                    ++ LK ++LS       +  +   L  LE L+    +    +     F +L
Sbjct: 74  ------DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSL 125

Query: 356 TELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
             LI +D S  +      +  F   + +  LK A NSF          +L +L  LDL  
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 414 NSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVPES 472
             L+ + P +  +  S++ L +  N F       ++  +  SL+ +D+S N +     + 
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN--SLQVLDYSLNHIMTS-KKQ 241

Query: 473 IFQ--IKGLNVLRLSSNKFS 490
             Q     L  L L+ N F+
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 70/309 (22%), Positives = 109/309 (35%), Gaps = 59/309 (19%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNM-FP 527
           VP  I        L L SNK    +   +F  L QL  L LS N  SF    S S+    
Sbjct: 22  VPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 528 KIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNM 587
            +  L LS   +    +       L HLD  ++ +K ++  ++  +    L++L++SH  
Sbjct: 79  SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTH 137

Query: 588 LEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYIN 647
                                 + +  G       S+  L  + N F  N   +      
Sbjct: 138 TRV-----------------AFNGIFNGLS-----SLEVLKMAGNSFQENFLPD------ 169

Query: 648 YAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEF 707
             +F  L +                L  LDLS   L    P+   S + L+VL + +N F
Sbjct: 170 --IFTELRN----------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

Query: 708 LGTVPQVIGNECSLRTLDLSQNHLAGSLPKSL--SKCTSLEVLDVGKNQLN-----GSFP 760
                       SL+ LD S NH+  +  K       +SL  L++ +N         SF 
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 270

Query: 761 FWLETLPQL 769
            W++   QL
Sbjct: 271 QWIKDQRQL 279

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 17/214 (7%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L +SS+ ++     S S F    L++L+L+ N + +    S F  L  L HL+  +S   
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLK 114

Query: 146 GHIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGG-IDISGA 202
                 +  SL+ L+ LD+S +                +   L++LE L + G       
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHT--------RVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 203 DWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSL 262
               I + L NL  L L  C +     ++ + L  L  LN+  N+  S         +SL
Sbjct: 167 LPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225

Query: 263 QYLHLSLCGLYGRVPEKIF--LMPSLCFLDVSSN 294
           Q L  SL  +     ++       SL FL+++ N
Sbjct: 226 QVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 17/223 (7%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSG-FDRLFSLTHLNLSYSGFSGHIPLEISSLKML 158
                 L +L  L+L+ N L      S       SL +L+LS++G    +      L+ L
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 103

Query: 159 VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILS 218
             LD   S       L++ +   +  +L NL  L +       A  G I + LS+L +L 
Sbjct: 104 EHLDFQHS------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLK 156

Query: 219 LPDCHVAGPIHS-SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
           +              ++L+ LT L+L    L    P    + SSLQ L++S       + 
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLD 215

Query: 278 EKIFL-MPSLCFLDVSSNSNLTGSLPE---FPPSSQLKVIELS 316
              +  + SL  LD S N ++  +  +       S L  + L+
Sbjct: 216 TFPYKCLNSLQVLDYSLN-HIM-TSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 6e-16
 Identities = 62/284 (21%), Positives = 90/284 (31%), Gaps = 62/284 (21%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNE--FLGTVPQVIGNECSLRTLDLSQN 729
               L+L  N L             L  L L +N   F G   Q      SL+ LDLS N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSNNYDGSIKDTQT 788
            +  ++  +      LE LD   + L     F    +L  L  L +   +     +    
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAF- 142

Query: 789 ANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYY 845
              F     L+++ ++ N+F  N     F                         L NL  
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-----------------------LRNL-- 177

Query: 846 QDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQI 905
                                 T +D+S  Q E   P       +L VLNMS+NNF    
Sbjct: 178 ----------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 906 PATLGNLKELGSLDLSHNQLSGKIPEKL--ATLNFLSVLKLSQN 947
                 L  L  LD S N +     ++      + L+ L L+QN
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 53/281 (18%), Positives = 82/281 (29%), Gaps = 60/281 (21%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRNNEFLGT 710
            L SN L             L  L LS N L+              LK L L  N  + T
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT 92

Query: 711 VPQVIGNECSLRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQLNGSFPFWLETLPQL 769
           +         L  LD   ++L      S+     +L  LD+       +F      L  L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 770 RVLVLQSNNYDGSIKDTQTANAFAL---LQIIDISSNNFSGNLPARWFQSWRGMKKRTKE 826
            VL +  N++  +       + F     L  +D+S       L    F S          
Sbjct: 153 EVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLE-QLSPTAFNS---------- 197

Query: 827 SQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLG 886
                        LS+L                          +++S+N F         
Sbjct: 198 -------------LSSL------------------------QVLNMSHNNFFSLDTFPYK 220

Query: 887 DFDALLVLNMSNNNFKGQIPATLGNL-KELGSLDLSHNQLS 926
             ++L VL+ S N+        L +    L  L+L+ N  +
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 59/284 (20%), Positives = 92/284 (32%), Gaps = 62/284 (21%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
               +  +   LT S+P+ + SS     L+L +N+       V      L  L LS N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 732 A--GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTA 789
           +  G   +S    TSL+ LD+  N +  +       L QL  L  Q +N    +K     
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN----LKQMSEF 119

Query: 790 NAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQ 846
           + F     L  +DIS  +         F                         LS+L   
Sbjct: 120 SVFLSLRNLIYLDISHTHTR-VAFNGIFNG-----------------------LSSL--- 152

Query: 847 DSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPE-MLGDFDALLVLNMSNNNFKGQI 905
                                  + ++ N F+      +  +   L  L++S    +   
Sbjct: 153 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191

Query: 906 PATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
           P    +L  L  L++SHN            LN L VL  S N +
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 50/232 (21%), Positives = 90/232 (38%), Gaps = 28/232 (12%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           CS   +  +   L  S+P  +   +S   L++  N+L        + L QL  L L SN 
Sbjct: 7   CSGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 779 YDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYL 838
                  +Q+      L+ +D+S N     + +    ++ G+++          L+ +  
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS----NFLGLEQ----------LEHLDF 108

Query: 839 ELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSN 898
           + SNL       +    + + L  +      +D+S+         +     +L VL M+ 
Sbjct: 109 QHSNL-----KQMSEFSVFLSLRNL----IYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 899 NNFKGQIPA-TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
           N+F+          L+ L  LDLS  QL    P    +L+ L VL +S N  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 26/170 (15%)

Query: 789 ANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDS 848
               +    +++ SN    +LP   F                  L  + L  + L ++  
Sbjct: 24  TGIPSSATRLELESNKLQ-SLPHGVFDKLTQ-------------LTKLSLSSNGLSFKGC 69

Query: 849 VTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA- 907
            +  + G +  L         +D+S N     +       + L  L+  ++N K Q+   
Sbjct: 70  CSQSDFGTT-SL-------KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEF 119

Query: 908 -TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
               +L+ L  LD+SH             L+ L VLK++ N         
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.8 bits (231), Expect = 7e-20
 Identities = 79/477 (16%), Positives = 139/477 (29%), Gaps = 97/477 (20%)

Query: 334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTG 393
                 +      +   S   L  L ++D   ++ +  +        +  L    N+ T 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNIT- 77

Query: 394 TIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL 453
           T+ LS   Q  +L  L   +N L  +    L     +  L    N    +L K   + + 
Sbjct: 78  TLDLS---QNTNLTYLACDSNKLTNLDVTPL---TKLTYLNCDTN----KLTKLDVSQNP 127

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
            L  ++ ++N L  +    +     L  L    NK    IT        QL TL+ S N 
Sbjct: 128 LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNK 181

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG-EIPNWTWN 572
            +  +  S       +  L   +  IT+    L     L  LD S+N++   ++   T  
Sbjct: 182 IT-ELDVSQ---NKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-- 233

Query: 573 VGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSEN 632
               +L + + S N L          T + L  L      L             +D + N
Sbjct: 234 ----QLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDLLE-----------IDLTHN 274

Query: 633 KFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLV 692
                              F          + ++      L +LD     +T  +     
Sbjct: 275 TQLIY--------------FQAEGCRKIKELDVTHNTQ--LYLLDCQAAGIT-ELD---- 313

Query: 693 SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGK 752
                                 +     L  L L+   L   L   +S  T L+ L    
Sbjct: 314 ----------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVN 348

Query: 753 NQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL---LQIIDISSNNFS 806
             +   F   +  +P L              K+T T N+  +     ++D   N  +
Sbjct: 349 AHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.1 bits (224), Expect = 6e-19
 Identities = 72/456 (15%), Positives = 133/456 (29%), Gaps = 59/456 (12%)

Query: 212 SNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG 271
            N          +      S  +L  LT L+   + ++      +   + L  L  +   
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 272 LYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNL 331
           +   +   +    +L +L   SN  LT +L    P ++L  +     + +      ++  
Sbjct: 76  I-TTLD--LSQNTNLTYLACDSN-KLT-NLD-VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 332 ALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSF 391
            LL  L  +  N    I     + T+L  +D   N    +        ++ +L  + N  
Sbjct: 127 PLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKI 182

Query: 392 TGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNAS 451
           T  + +S   Q   L  L+   N++  +          +  L    N    +L +     
Sbjct: 183 T-ELDVS---QNKLLNRLNCDTNNITKLDLNQN---IQLTFLDCSSN----KLTEIDVTP 231

Query: 452 SLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGF------------------I 493
              L   D S N L  L    +  +  L  L                            I
Sbjct: 232 LTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKI 288

Query: 494 TLEMFKDLRQLGTLELSENNF-SFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNL 552
                    QL  L+         ++S       PK+  L L++ ++TE    + + T L
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITELDLSQ-----NPKLVYLYLNNTELTELD--VSHNTKL 341

Query: 553 FHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNM 612
             L   N  I+ +  +         L +   +        K      S  +AV     + 
Sbjct: 342 KSLSCVNAHIQ-DFSSVGKIP---ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

Query: 613 LQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINY 648
                 I P      D + N  T          + Y
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 89.0 bits (221), Expect = 2e-18
 Identities = 74/470 (15%), Positives = 155/470 (32%), Gaps = 59/470 (12%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
              + S   L  L  L+  ++S+       G ++L  LT L  + +  +    L++S   
Sbjct: 32  ATDTISEEQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITT---LDLSQNT 85

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKL-VKNLTNLEELYLGGIDISGADWGPILSILSNLR 215
            L  L   ++            L  L V  LT L  L      ++  D    +S    L 
Sbjct: 86  NLTYLACDSN-----------KLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLT 130

Query: 216 ILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGR 275
            L+     +       +S    LT L+   N   +++   +T  + L  L  S   +   
Sbjct: 131 YLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE- 184

Query: 276 VPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLE 335
               +     L  L+  +N N+T  L     + QL  ++ S  + + ++   +  L  L 
Sbjct: 185 --LDVSQNKLLNRLNCDTN-NIT-KLD-LNQNIQLTFLDCSSNKLT-EID--VTPLTQLT 236

Query: 336 DLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTI 395
             + S  N    +  S   L++L  +   + +    +     + ++I  +         +
Sbjct: 237 YFDCSV-NPLTELDVS--TLSKLTTLHCIQTDLL-EID-LTHNTQLIYFQAEGCRKIKEL 291

Query: 396 PLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSL 455
            ++       L +LD +   +  +          +  L L       +L +   + +  L
Sbjct: 292 DVT---HNTQLYLLDCQAAGITELDLSQN---PKLVYLYLNNT----ELTELDVSHNTKL 341

Query: 456 REMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFS 515
           + +      +Q     S+ +I  LN    +  +        +        +L ++ +   
Sbjct: 342 KSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETL-----TNNSLTIAVSPDL 394

Query: 516 FNVSGSNSNMFPK-IGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG 564
            +  G+  N+ P   G    ++  IT       N    +     N  I G
Sbjct: 395 LDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVG 444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 8e-17
 Identities = 57/448 (12%), Positives = 121/448 (27%), Gaps = 94/448 (20%)

Query: 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK 563
             +   +        + S   +   + +L   +  IT+        T L  L  ++N I 
Sbjct: 20  FASEVAAAFEMQATDTISEEQL-ATLTSLDCHNSSITDMTGI-EKLTGLTKLICTSNNIT 77

Query: 564 G-EIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA 622
             ++   T       L +L    N L         LT   L  L+  +N L         
Sbjct: 78  TLDLSQNT------NLTYLACDSNKLTNL--DVTPLTK--LTYLNCDTNKLTKLDVSQNP 127

Query: 623 SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNH 682
            + +L+ + N  T                             + + +   L  LD   N 
Sbjct: 128 LLTYLNCARNTLTE----------------------------IDVSHNTQLTELDCHLNK 159

Query: 683 LTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKC 742
               +     +   L  L    N+ +  +   +     L  L+   N++   L   L++ 
Sbjct: 160 KITKLDVTPQTQ--LTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNIT-KLD--LNQN 211

Query: 743 TSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISS 802
             L  LD   N+L          L QL       N            +  + L  +    
Sbjct: 212 IQLTFLDCSSNKLT-EIDV--TPLTQLTYFDCSVNPLT-----ELDVSTLSKLTTLHCIQ 263

Query: 803 NNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAK 862
            +    +                    +   + +Y +         + + +         
Sbjct: 264 TDLL-EIDL------------------THNTQLIYFQAEGCRKIKELDVTH--------- 295

Query: 863 ILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSH 922
             T    +D        E+   L     L+ L ++N     ++   + +  +L SL   +
Sbjct: 296 -NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVN 348

Query: 923 NQLSGKIPEKLATLNFLSVLKLSQNLLV 950
             +       +  +  L+    ++   +
Sbjct: 349 AHIQ-DFSS-VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 85/480 (17%), Positives = 146/480 (30%), Gaps = 104/480 (21%)

Query: 455 LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNF 514
                 +  ++Q     S  Q+  L  L   ++  +    +   + L  L  L  + NN 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNNI 76

Query: 515 -SFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV 573
            + ++S         +  L   S K+T     +   T L +L+   N++     +     
Sbjct: 77  TTLDLSQ-----NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS----- 124

Query: 574 GDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSEN 632
            +  L +LN + N L           +T L  LD H N       + P   +  LD S N
Sbjct: 125 QNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180

Query: 633 KFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLV 692
           K T                           + +S      L  L+   N++T  +    +
Sbjct: 181 KITE--------------------------LDVSQNKL--LNRLNCDTNNIT-KLD---L 208

Query: 693 SSNI-LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG 751
           + NI L  L   +N+ L  +   +     L   D S N L   L   +S  + L  L   
Sbjct: 209 NQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCI 262

Query: 752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPA 811
           +  L       L    QL     +       +  T        L ++D  +   +  L  
Sbjct: 263 QTDLL-EID--LTHNTQLIYFQAEGCRKIKELDVTHNTQ----LYLLDCQAAGIT-ELDL 314

Query: 812 RWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSID 871
                             SQ  K VYL L+N           +   ++++   T   S+ 
Sbjct: 315 ------------------SQNPKLVYLYLNN----------TELTELDVSH-NTKLKSLS 345

Query: 872 VSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLK-----ELGSLDLSHNQLS 926
             N   + +    +G   AL     +          TL N           LD   N ++
Sbjct: 346 CVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 63/316 (19%), Positives = 120/316 (37%), Gaps = 44/316 (13%)

Query: 284 PSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCN 343
                   SS S L  S+P     + +K ++LS  R +      +     L+ L L+  N
Sbjct: 31  DRNGICKGSSGS-LN-SIPSGLTEA-VKSLDLSNNRITYISNSDLQRCVNLQALVLTS-N 86

Query: 344 FFGSIPS-SFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ 402
              +I   SF +L  L ++D S N  S +L S              + F           
Sbjct: 87  GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSS--------------SWFKP--------- 122

Query: 403 LISLQVLDLRNNSLQGIIPKSLYTKQ-SIESLLLGQNKFHGQLEK--FQNASSLSLREMD 459
           L SL  L+L  N  + +   SL++    ++ L +G      ++++  F   + L   E++
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL--EELE 180

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFN-- 517
              + LQ   P+S+  I+ ++ L L   +    +          +  LEL + +      
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 518 --VSGSNSNMFPKIGTLK---LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWN 572
             +S   +N   K  T +   ++   + +    L   + L  L+ S N++K  +P+  ++
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFD 298

Query: 573 VGDGKLVHLNLSHNML 588
                L  + L  N  
Sbjct: 299 -RLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 61/309 (19%), Positives = 107/309 (34%), Gaps = 49/309 (15%)

Query: 210 ILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSL 269
           +   ++ L L +  +    +S L +   L  L L  N +++   D  ++  SL++L LS 
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 270 CGLYGRVPEKIFL-MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSI 328
             L   +    F  + SL FL++  N                    L ET     L    
Sbjct: 110 NYL-SNLSSSWFKPLSSLTFLNLLGN----------------PYKTLGETSLFSHLT--- 149

Query: 329 NNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSRNNFSGSLP--SFASSNKVISLK 385
                L+ L + + + F  I    F  LT L  ++   ++   S    S  S   V  L 
Sbjct: 150 ----KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLI 204

Query: 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLE 445
                    +   + D   S++ L+LR+  L       L    + E+  L +        
Sbjct: 205 LHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSEL---STGETNSLIK-------- 252

Query: 446 KFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLG 505
                   + R +  +   L  +  + + QI GL  L  S N+    +   +F  L  L 
Sbjct: 253 ------KFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQ 304

Query: 506 TLELSENNF 514
            + L  N +
Sbjct: 305 KIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 63/320 (19%), Positives = 106/320 (33%), Gaps = 76/320 (23%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159
           +S L     LQ L L  N + +      F  L SL HL+LSY+         +S+L    
Sbjct: 69  NSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYN--------YLSNLS--- 116

Query: 160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSL 219
                                   K L++L  L L G          + S L+ L+IL +
Sbjct: 117 --------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 220 PDCHVAGPIHS-SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE 278
            +      I     + L  L  L +D +DL S  P  L +  ++ +L L +      + E
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215

Query: 279 KIF-LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDL 337
               +  S+  L++      T    E                      +S+       ++
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGE----------------TNSLIKKFTFRNV 259

Query: 338 ELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPL 397
           +++D      +      ++ L+ ++FSRN    S+P                 F      
Sbjct: 260 KITD-ESLFQVMKLLNQISGLLELEFSRNQLK-SVP--------------DGIF------ 297

Query: 398 SYGDQLISLQVLDLRNNSLQ 417
              D+L SLQ + L  N   
Sbjct: 298 ---DRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 55/322 (17%), Positives = 108/322 (33%), Gaps = 63/322 (19%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           +P  + +   +  L LS+N+ + +I+    +    L  L L+ N                
Sbjct: 46  IPSGLTE--AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN---------------- 86

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNM 587
                     I     +   +  +L HLDLS N +   + + +W      L  LNL  N 
Sbjct: 87  ---------GINTIEEDSFSSLGSLEHLDLSYNYLS-NLSS-SWFKPLSSLTFLNLLGNP 135

Query: 588 LEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYIN 647
            +   +       T L +L + +        I       L + E                
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTK--IQRKDFAGLTFLE---------------- 177

Query: 648 YAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-LKVLKLRNN- 705
                 + +++L    P SL +  ++  L L        +    V     ++ L+LR+  
Sbjct: 178 ---ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 706 -------EFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGS 758
                  E        +  + + R + ++   L   + K L++ + L  L+  +NQL   
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSV 292

Query: 759 FPFWLETLPQLRVLVLQSNNYD 780
                + L  L+ + L +N +D
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 6e-13
 Identities = 53/289 (18%), Positives = 103/289 (35%), Gaps = 43/289 (14%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP-QVIGNECSLRTLDLSQNH 730
            ++ LDLS+N +T    S L     L+ L L +N  + T+      +  SL  LDLS N+
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY 111

Query: 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPF-WLETLPQLRVLVLQSNNYDGSIKDTQTA 789
           L+          +SL  L++  N             L +L++L + + +    I+     
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR---- 167

Query: 790 NAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQ 846
             FA    L+ ++I +++   +   +  +S              Q +  + L +      
Sbjct: 168 KDFAGLTFLEELEIDASDLQ-SYEPKSLKS-------------IQNVSHLILHMKQH--- 210

Query: 847 DSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEML--GDFDAL-----LVLNMSNN 899
                    L      + +    +++ +   +      L  G+ ++L            +
Sbjct: 211 -------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 900 NFKGQIPATLGNLKELGSLDLSHNQLSGKIPEK-LATLNFLSVLKLSQN 947
               Q+   L  +  L  L+ S NQL   +P+     L  L  + L  N
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 44/287 (15%), Positives = 83/287 (28%), Gaps = 75/287 (26%)

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQ 775
           ++++LDLS N +       L +C +L+ L +  N +      SF     +L  L  L L 
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF----SSLGSLEHLDLS 108

Query: 776 SNNYDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
            N     + +   ++ F     L  +++  N +        F                  
Sbjct: 109 YNY----LSNLS-SSWFKPLSSLTFLNLLGNPYKTLGETSLFS----------------- 146

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFD--- 889
                  L+ L                          + V N     +I     DF    
Sbjct: 147 ------HLTKLQI------------------------LRVGNMDTFTKIQR--KDFAGLT 174

Query: 890 ALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKL-ATLNFLSVLKLSQNL 948
            L  L +  ++ +   P +L +++ +  L L   Q    + E      + +  L+L    
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233

Query: 949 LVGEIPRGPQFATFTAASFEGNAGLCGFPLPKACQNALPPVEQTTKD 995
           L         F+  +            F   K    +L  V +    
Sbjct: 234 L-----DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 1e-17
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 24/251 (9%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMD 459
           D        +L+  S+   + ++      I+ ++   +     ++  Q    L ++ ++ 
Sbjct: 18  DAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNS----DIKSVQGIQYLPNVTKLF 71

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVS 519
            + NKL  +  + +  +K L  L L  NK      L   KDL++L +L L  N  S    
Sbjct: 72  LNGNKLTDI--KPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGIS---D 123

Query: 520 GSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
            +     P++ +L L + KIT+    L   T L  L L +N+I  +I          KL 
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLT---KLQ 178

Query: 580 HLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTT-NI 638
           +L LS N +         L +  L VL+L S           ++++  +  +N   +   
Sbjct: 179 NLYLSKNHISDLR-ALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 639 PYNIGNYINYA 649
           P  I +  +Y 
Sbjct: 236 PEIISDDGDYE 246

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 7e-15
 Identities = 58/298 (19%), Positives = 99/298 (33%), Gaps = 31/298 (10%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
                   NL   S+         + L S+  +  + S     +   I  L  +  L L+
Sbjct: 19  AFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLN 73

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGG---IDISGADWGPILSILSNLRILSLPD 221
            + L         +++ L  NL NL  L+L      D+S       L  L  L+ LSL  
Sbjct: 74  GNKL--------TDIKPL-TNLKNLGWLFLDENKIKDLSS------LKDLKKLKSLSLEH 118

Query: 222 CHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF 281
             ++    + L  L  L  L L  N ++      L+  + L  L L    +       + 
Sbjct: 119 NGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLA 172

Query: 282 LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSD 341
            +  L  L +S N +++  L        L V+EL       K  +  +NL +   ++ +D
Sbjct: 173 GLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 342 CNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSY 399
            +       S     E  N+ +    F+  +         I    A      T PL  
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKE 288

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 2e-13
 Identities = 47/287 (16%), Positives = 100/287 (34%), Gaps = 24/287 (8%)

Query: 455 LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNF 514
           + E       ++ + P+  F         L     +  +T     +L  +  +  + ++ 
Sbjct: 1   MGETITVSTPIKQIFPDDAF--AETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDI 55

Query: 515 SFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVG 574
               S       P +  L L+  K+T+    L N  NL  L L  N+IK ++ +      
Sbjct: 56  K---SVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLSSLKDLK- 109

Query: 575 DGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENK 633
             KL  L+L HN +        +L    L  L L +N +     +     +  L   +N+
Sbjct: 110 --KLKSLSLEHNGISDIN-GLVHLPQ--LESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 164

Query: 634 FTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS 693
            + +I   +         + L+ N++S    L+     +L VL+L          +   +
Sbjct: 165 IS-DIV-PLAGLTKLQNLY-LSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSN 219

Query: 694 SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLS 740
             +   +K  +       P++I ++      ++  +    +   S  
Sbjct: 220 LVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 2e-11
 Identities = 60/360 (16%), Positives = 113/360 (31%), Gaps = 49/360 (13%)

Query: 184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS--SLSKLQLLTHL 241
                  +  L    ++ A      + L+++  +   +      I S   +  L  +T L
Sbjct: 18  DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSD----IKSVQGIQYLPNVTKL 70

Query: 242 NLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSL 301
            L+GN L+   P  LTN  +L +L L    +                 D+SS  +L    
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKI----------------KDLSSLKDLK--- 109

Query: 302 PEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINI 361
                  +LK + L     S  + + + +L  LE L L +     +  +    LT+L  +
Sbjct: 110 -------KLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTL 158

Query: 362 DFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIP 421
               N  S  +   A   K+ +L  + N  +    L+    L +L VL+L +        
Sbjct: 159 SLEDNQIS-DIVPLAGLTKLQNLYLSKNHISDLRALAG---LKNLDVLELFSQECLNKPI 214

Query: 422 KSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNV 481
                     ++        G L   +  S     E    +  L     E  F       
Sbjct: 215 NHQSNLVVPNTV----KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270

Query: 482 LRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITE 541
           +  +  +F G +T  + +       ++ +            +   P      +     TE
Sbjct: 271 IGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTE 330

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 4e-11
 Identities = 49/258 (18%), Positives = 84/258 (32%), Gaps = 52/258 (20%)

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
                L+       V Q      S+  +  + + +  S+ + +    ++  L +  N+L 
Sbjct: 23  TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78

Query: 757 GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFS-----GNLPA 811
              P  L  L  L  L L  N     IKD  +      L+ + +  N  S      +LP 
Sbjct: 79  DIKP--LTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP- 131

Query: 812 RWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSID 871
                                 +   L L N          NK   + +   LT   ++ 
Sbjct: 132 ----------------------QLESLYLGN----------NKITDITVLSRLTKLDTLS 159

Query: 872 VSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPE 931
           + +NQ   +I   L     L  L +S N+    + A L  LK L  L+L   +   K   
Sbjct: 160 LEDNQIS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPIN 215

Query: 932 KLATLNFLSVLKLSQNLL 949
             + L   + +K +   L
Sbjct: 216 HQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 4e-08
 Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 46/278 (16%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
           +L   +++  +  +  N   +  +  +++ +  S+   +     +  L L  N+   T  
Sbjct: 27  NLKKKSVTDAVTQNELN--SIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL--TDI 80

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
           + + N  +L  L L +N +      SL     L+ L +  N ++      L  LPQL  L
Sbjct: 81  KPLTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESL 136

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
            L +N     I D    +    L  + +  N                    +     + +
Sbjct: 137 YLGNNK----ITDITVLSRLTKLDTLSLEDNQI------------------SDIVPLAGL 174

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
            K   L LS           N    +     L     +++ + +   +      +     
Sbjct: 175 TKLQNLYLSK----------NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 893 VLNMSNNNFKG----QIPATLGNLKELGSLDLSHNQLS 926
            +  ++ +                     L    N++S
Sbjct: 225 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 83.3 bits (206), Expect = 1e-16
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 15/253 (5%)

Query: 172 IQLRRANLEKLVKNL-TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHS 230
           +   R  L ++ + + +N   L L   +I           L +L +L L    +      
Sbjct: 59  VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVG 117

Query: 231 SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFL 289
           + + L  L  L L  N L+          S L+ L L    +   +P   F  +PSL  L
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRL 176

Query: 290 DVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGS 347
           D+     L   + E  F     LK + L        +P+ +  L  LE+LE+S  N F  
Sbjct: 177 DLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSG-NHFPE 232

Query: 348 IPS-SFGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLI 404
           I   SF  L+ L  +    +  S  +    F     ++ L  AHN+ + ++P      L 
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLR 290

Query: 405 SLQVLDLRNNSLQ 417
            L  L L +N   
Sbjct: 291 YLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 65/311 (20%), Positives = 105/311 (33%), Gaps = 63/311 (20%)

Query: 307 SSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSR 365
           S+Q   +  +    S ++P  I   +    L L + N    I + +F +L  L  +   R
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGR 108

Query: 366 NNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLY 425
           N+    +   A              F G         L SL  L+L +N L  I   +  
Sbjct: 109 NSIR-QIEVGA--------------FNG---------LASLNTLELFDNWLTVIPSGA-- 142

Query: 426 TKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQ-IKGLNVLRL 484
                                F+  S L  RE+    N ++ + P   F  +  L  L L
Sbjct: 143 ---------------------FEYLSKL--RELWLRNNPIESI-PSYAFNRVPSLMRLDL 178

Query: 485 SSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN 544
              K   +I+   F+ L  L  L L   N     + +       +  L++S     E   
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRP 235

Query: 545 F-LRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVL 603
                 ++L  L + N+++   I    ++ G   LV LNL+HN L +            L
Sbjct: 236 GSFHGLSSLKKLWVMNSQVS-LIERNAFD-GLASLVELNLAHNNLSSLP-HDLFTPLRYL 292

Query: 604 AVLDLHSNMLQ 614
             L LH N   
Sbjct: 293 VELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 51/281 (18%), Positives = 86/281 (30%), Gaps = 61/281 (21%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTV-PQVIGNECSLRTLDLSQNH 730
           + + L+L +N++           + L+VL+L  N  +  +         SL TL+L  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW 134

Query: 731 LAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790
           L      +    + L  L +  N +     +    +P L  L L        I    +  
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI----SEG 190

Query: 791 AFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
           AF     L+ +++   N   ++P                             L  L    
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMPN--LTP-----------------------LVGL---- 220

Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
                                 +++S N F    P       +L  L + N+        
Sbjct: 221 --------------------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 908 TLGNLKELGSLDLSHNQLSGKIPEK-LATLNFLSVLKLSQN 947
               L  L  L+L+HN LS  +P      L +L  L L  N
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 65/296 (21%), Positives = 101/296 (34%), Gaps = 69/296 (23%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           VP+ I        L L  N     I  + F+ L  L  L+L  N+      G+ + +   
Sbjct: 69  VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-AS 124

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH-N 586
           + TL+L    +T  P       + L  L L NN I+  IP++ +N     L+ L+L    
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN-RVPSLMRLDLGELK 182

Query: 587 MLE-----AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYN 641
            LE     AFE     L +  L  L+L    +                       ++P  
Sbjct: 183 KLEYISEGAFE----GLFN--LKYLNLGMCNI----------------------KDMPN- 213

Query: 642 IGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLK 701
                       L                  L+ L++S NH     P      + LK L 
Sbjct: 214 ---------LTPLVG----------------LEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 702 LRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKS-LSKCTSLEVLDVGKNQLN 756
           + N++             SL  L+L+ N+L+ SLP    +    L  L +  N  N
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 51/281 (18%), Positives = 87/281 (30%), Gaps = 60/281 (21%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
               +  +   L+  +P  + S+   + L L  N           +   L  L L +N +
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIPSN--TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
                 + +   SL  L++  N L        E L +LR L L++N     I+    + A
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP----IESIP-SYA 166

Query: 792 FA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDS 848
           F     L  +D+        +    F+                        L NL     
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEG-----------------------LFNL----- 198

Query: 849 VTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPAT 908
                                +++     + ++P  L     L  L MS N+F    P +
Sbjct: 199 -------------------KYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGS 237

Query: 909 LGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLL 949
              L  L  L + ++Q+S         L  L  L L+ N L
Sbjct: 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 5e-13
 Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 22/236 (9%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           L++  + I   +  + +   L  L+ L L  NS+        F+ L SL  L L  +  +
Sbjct: 80  LNLMENNIQ--MIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLT 136

Query: 146 GHIPLEI-SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGI-DISGAD 203
             IP      L  L  L L  + + + I             + +L  L LG +  +    
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIES-IP------SYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 204 WGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQ 263
            G     L NL+ L+L  C++      +L+ L  L  L + GN      P      SSL+
Sbjct: 189 EG-AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 264 YLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELS 316
            L +    +   +    F  + SL  L+++ N NL+ SLP   F P   L  + L 
Sbjct: 246 KLWVMNSQV-SLIERNAFDGLASLVELNLAHN-NLS-SLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 3e-10
 Identities = 49/258 (18%), Positives = 89/258 (34%), Gaps = 45/258 (17%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
           +L  NN+      +  +   L+VL L  N +             L  L+L +N  L  +P
Sbjct: 81  NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIP 139

Query: 713 -QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGK-NQLNGSFPFWLETLPQLR 770
                    LR L L  N +      + ++  SL  LD+G+  +L        E L  L+
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199

Query: 771 VLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES 830
            L L   N    IKD         L+ +++S N+F   +    F     +KK        
Sbjct: 200 YLNLGMCN----IKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKK-------- 246

Query: 831 QILKFVYLELSNLYYQDSVTLMNKGLSMELAKI-------LTIFTSIDVSNNQFEGEIPE 883
                  L + N                +++ I       L     +++++N       +
Sbjct: 247 -------LWVMN---------------SQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 884 MLGDFDALLVLNMSNNNF 901
           +      L+ L++ +N +
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 56/237 (23%), Positives = 93/237 (39%), Gaps = 14/237 (5%)

Query: 187 TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGN 246
           TN   L L    I           L +L IL L   H+      + + L  L  L L  N
Sbjct: 64  TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 247 DLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSNLTGSLPE-- 303
            L++         S L+ L L    +   +P   F  +PSL  LD+     L+  + E  
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLS-YISEGA 180

Query: 304 FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFGNLTELINID 362
           F   S L+ + L+      ++P+ +  L  L++L+LS  N   +I   SF  L  L  + 
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLW 237

Query: 363 FSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQ 417
             ++     +    F +   ++ +  AHN+ T  +P      L  L+ + L +N   
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 8e-16
 Identities = 47/279 (16%), Positives = 85/279 (30%), Gaps = 57/279 (20%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           + ++L+L +N +     +       L++L+L  N              +L TL+L  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
                 +    + L+ L +  N +     +    +P LR L L        I    +  A
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI----SEGA 180

Query: 792 FA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDS 848
           F     L+ ++++  N    +P                             L  L     
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPN--LTP-----------------------LIKL----- 209

Query: 849 VTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPAT 908
                                +D+S N      P        L  L M  +  +      
Sbjct: 210 -------------------DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 909 LGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
             NL+ L  ++L+HN L+    +    L+ L  + L  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 3e-15
 Identities = 56/269 (20%), Positives = 98/269 (36%), Gaps = 15/269 (5%)

Query: 349 PSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQV 408
           PS      +   +   R N    +P   S+N    L    N     I ++    L  L++
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGISTN-TRLLNLHENQIQ-IIKVNSFKHLRHLEI 92

Query: 409 LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQG 467
           L L  N ++ I   +     ++ +L L  N+        F   S L  +E+    N ++ 
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL--KELWLRNNPIES 150

Query: 468 LVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFP 527
           +   +  +I  L  L L   K   +I+   F+ L  L  L L+  N     + +      
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP---LI 207

Query: 528 KIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
           K+  L LS   ++       +   +L  L +  ++I+  I    ++     LV +NL+HN
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFD-NLQSLVEINLAHN 265

Query: 587 MLEAF-EKPGPNLTSTVLAVLDLHSNMLQ 614
            L          L    L  + LH N   
Sbjct: 266 NLTLLPHDLFTPLHH--LERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 6e-15
 Identities = 62/322 (19%), Positives = 96/322 (29%), Gaps = 77/322 (23%)

Query: 523 SNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
             +      L L   +I     N  ++  +L  L LS N I+  I    +N G   L  L
Sbjct: 60  DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFN-GLANLNTL 117

Query: 582 NLSHNML-----EAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA------SIIFLDYS 630
            L  N L      AF      L+   L  L L +N ++    IP        S+  LD  
Sbjct: 118 ELFDNRLTTIPNGAFV----YLSK--LKELWLRNNPIES---IPSYAFNRIPSLRRLDLG 168

Query: 631 ENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSC 690
           E K  + I            F  L++                L+ L+L+  +L   IP+ 
Sbjct: 169 ELKRLSYISEG--------AFEGLSN----------------LRYLNLAMCNLR-EIPNL 203

Query: 691 LVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV 750
                 L  L L  N      P        L+ L + Q+ +      +     SL  +++
Sbjct: 204 TPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262

Query: 751 GKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLP 810
             N L          LP                           L+ I +  N ++ N  
Sbjct: 263 AHNNL--------TLLPH------------------DLFTPLHHLERIHLHHNPWNCNCD 296

Query: 811 ARWFQSWRGMKKRTKESQESQI 832
             W   W  +K     +     
Sbjct: 297 ILWLSWW--IKDMAPSNTACCA 316

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.6 bits (181), Expect = 1e-13
 Identities = 67/295 (22%), Positives = 101/295 (34%), Gaps = 67/295 (22%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           VP+ I       +L L  N+    I +  FK LR L  L+LS N+      G+ + +   
Sbjct: 58  VPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL-AN 113

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH-N 586
           + TL+L   ++T  P       + L  L L NN I+  IP++ +N     L  L+L    
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFN-RIPSLRRLDLGELK 171

Query: 587 MLE-----AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYN 641
            L      AFE     L++  L  L+L    L                        IP  
Sbjct: 172 RLSYISEGAFE----GLSN--LRYLNLAMCNL----------------------REIPN- 202

Query: 642 IGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLK 701
                       L                  L  LDLS NHL+   P        L+ L 
Sbjct: 203 ---------LTPLIK----------------LDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 702 LRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
           +  ++          N  SL  ++L+ N+L        +    LE + +  N  N
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 20/222 (9%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKML 158
            +S   L+ L+ L L+ N + +      F+ L +L  L L  +  +  IP      L  L
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKL 138

Query: 159 VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGI-DISGADWGPILSILSNLRIL 217
             L L  + + + I             + +L  L LG +  +S    G     LSNLR L
Sbjct: 139 KELWLRNNPIES-IP------SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYL 190

Query: 218 SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
           +L  C++      +L+ L  L  L+L GN LS+  P        LQ L +    +   + 
Sbjct: 191 NLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI-QVIE 247

Query: 278 EKIFL-MPSLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELS 316
              F  + SL  ++++ N NLT  LP   F P   L+ I L 
Sbjct: 248 RNAFDNLQSLVEINLAHN-NLT-LLPHDLFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 8e-13
 Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 14/195 (7%)

Query: 102 SLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVS 160
           +   L  L  L L DN L + P    F  L  L  L L  +     IP    + +  L  
Sbjct: 107 AFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRR 164

Query: 161 LDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLP 220
           LDL     ++ I       E   + L+NL  L L   ++      P L+ L  L  L L 
Sbjct: 165 LDLGELKRLSYIS------EGAFEGLSNLRYLNLAMCNLREI---PNLTPLIKLDELDLS 215

Query: 221 DCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKI 280
             H++     S   L  L  L +  + +     +   N  SL  ++L+   L   +P  +
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDL 274

Query: 281 F-LMPSLCFLDVSSN 294
           F  +  L  + +  N
Sbjct: 275 FTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 6e-10
 Identities = 50/255 (19%), Positives = 92/255 (36%), Gaps = 39/255 (15%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
           +L  N +      S  +   L++L LS NH+             L  L+L +N  L T+P
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIP 128

Query: 713 -QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGK-NQL----NGSFPFWLETL 766
                    L+ L L  N +      + ++  SL  LD+G+  +L     G+F    E L
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF----EGL 184

Query: 767 PQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKE 826
             LR L L   N    +++         L  +D+S N+ S  +    FQ           
Sbjct: 185 SNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMH------- 232

Query: 827 SQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLG 886
                 L+ +++  S +   +     N          L     I++++N       ++  
Sbjct: 233 ------LQKLWMIQSQIQVIERNAFDN----------LQSLVEINLAHNNLTLLPHDLFT 276

Query: 887 DFDALLVLNMSNNNF 901
               L  +++ +N +
Sbjct: 277 PLHHLERIHLHHNPW 291

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.8 bits (200), Expect = 6e-16
 Identities = 72/455 (15%), Positives = 132/455 (29%), Gaps = 101/455 (22%)

Query: 354 NLTELINIDFSRNNFS-GSLPSFASSNK-VISLKFAHNSFT--GTIPLSYG-DQLISLQV 408
           ++  L   D      S           +    ++      T      +S       +L  
Sbjct: 4   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 409 LDLRNNSLQGIIPKSL-----YTKQSIESLLLGQNKFHGQ-LEKFQNA--SSLSLREMDF 460
           L+LR+N L  +    +          I+ L L      G       +   +  +L+E+  
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 461 SQNKLQGLVPESIFQI-----KGLNVLRLSSNKFS--GFITL-EMFKDLRQLGTLELSEN 512
           S N L     + + +        L  L+L     S      L  + +       L +S N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 513 NFSF----NVSGSNSNMFPKIGTLKLSSCKITE-----FPNFLRNQTNLFHLDLSNNRIK 563
           + +      +     +   ++  LKL SC +T          + ++ +L  L L +N++ 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 564 GE----------IPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
                        P+         L  L +    +            T     DL   +L
Sbjct: 241 DVGMAELCPGLLHPSSR-------LRTLWIWECGI------------TAKGCGDL-CRVL 280

Query: 614 QGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDL 673
           +        S+  L  + N         +G+     +  +L                  L
Sbjct: 281 RAK-----ESLKELSLAGN--------ELGDEGARLLCETLLEPGCQ------------L 315

Query: 674 QVLDLSDNHLTG----SIPSCLVSSNILKVLKLRNNEFLGTVPQVIG-----NECSLRTL 724
           + L +     T        S L  +  L  L++ NN       + +          LR L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 725 DLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQL 755
            L+   +      SL  +L    SL  LD+  N L
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 76.5 bits (189), Expect = 1e-14
 Identities = 74/400 (18%), Positives = 116/400 (29%), Gaps = 92/400 (23%)

Query: 452 SLSLREMDFSQNKLQGL-VPESIFQIKGLNVLRLSSNKFS--GFITL-EMFKDLRQLGTL 507
           SL ++ +D    +L      E +  ++   V+RL     +      +    +    L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 508 ELSENNFS----FNVSGSNSNMFPKIGTLKLSSCKITE-----FPNFLRNQTNLFHLDLS 558
            L  N         V         KI  L L +C +T        + LR    L  L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 559 NNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML--QGS 616
           +N +           GD  L  L       E    P   L       L L    L     
Sbjct: 122 DNLL-----------GDAGLQLL------CEGLLDPQCRLEK-----LQLEYCSLSAASC 159

Query: 617 FPIPPA-----SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF 671
            P+            L  S N        +I       +   L  +              
Sbjct: 160 EPLASVLRAKPDFKELTVSNN--------DINEAGVRVLCQGLKDSPCQ----------- 200

Query: 672 DLQVLDLSDNHLT----GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNE-----CSLR 722
            L+ L L    +T      +   + S   L+ L L +N+        +          LR
Sbjct: 201 -LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 723 TLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQLNGS-----FPFWLETLPQLRVLV 773
           TL + +  +     G L + L    SL+ L +  N+L            LE   QL  L 
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 774 LQSNNYDGSIKDTQTANAFAL-------LQIIDISSNNFS 806
           ++S +           + F+        L  + IS+N   
Sbjct: 320 VKSCS----FTA-ACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 85/463 (18%), Positives = 148/463 (31%), Gaps = 87/463 (18%)

Query: 187 TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV----AGPIHSSLSKLQLLTHLN 242
            +++ L +   ++S A W  +L +L   +++ L DC +       I S+L     L  LN
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 243 LDGNDLSSEVPDFL-----TNFSSLQYLHLSLCGLYGRVPEKIFLM----PSLCFLDVSS 293
           L  N+L       +     T    +Q L L  C L G     +       P+L  L +S 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 294 NSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNF----FGSIP 349
           N  L  +           +  L E          ++    LE L+L  C+        + 
Sbjct: 123 N-LLGDA----------GLQLLCEG--------LLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 350 SSFGNLTELINIDFSRNNFSGS-----LPSFASSN-KVISLKFAHNSFT--GTIPLSYG- 400
           S      +   +  S N+ + +           S  ++ +LK      T      L    
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 401 DQLISLQVLDLRNNSL-----QGIIPKSLYTKQSIESLLLGQNKFHGQ-LEKFQNA--SS 452
               SL+ L L +N L       + P  L+    + +L + +     +          + 
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 453 LSLREMDFSQNKL-----QGLVPESIFQIKGLNVLRLSSNKFS--GFITL-EMFKDLRQL 504
            SL+E+  + N+L     + L    +     L  L + S  F+         +    R L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 505 GTLELSENNFS----FNVSGSNSNMFPKIGTLKLSSCKITE-----FPNFLRNQTNLFHL 555
             L++S N         +          +  L L+ C +++         L    +L  L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 556 DLSNNRIKGE----------IPNWTWNVGDGKLVHLNLSHNML 588
           DLSNN +              P          L  L L     
Sbjct: 404 DLSNNCLGDAGILQLVESVRQPGCL-------LEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.9 bits (177), Expect = 4e-13
 Identities = 80/475 (16%), Positives = 146/475 (30%), Gaps = 120/475 (25%)

Query: 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITE-----FPNFLRNQTNLFHLDLS 558
           + +L++     S         +  +   ++L  C +TE       + LR    L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 559 NNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML--QGS 616
           +N +           GD  +  +      L+  + P   +       L L +  L   G 
Sbjct: 65  SNEL-----------GDVGVHCV------LQGLQTPSCKIQK-----LSLQNCCLTGAGC 102

Query: 617 FPIPPA-----SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAF 671
             +        ++  L  S+N             +  A    L            L    
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNL------------LGDAGLQLLCE--------GLLDPQC 142

Query: 672 DLQVLDLSDNHLT----GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIG-----NECSLR 722
            L+ L L    L+      + S L +    K L + NN+      +V+      + C L 
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202

Query: 723 TLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQLNGS-----FPFWLETLPQLRVLV 773
            L L    +       L   ++   SL  L +G N+L         P  L    +LR L 
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 774 LQSNNYDGSIKDTQTAN-AFAL-----LQIIDISSNNFSGNLPARWFQSWRGMKKRTKES 827
           +        I      +    L     L+ + ++ N               G +      
Sbjct: 263 IWECG----ITAKGCGDLCRVLRAKESLKELSLAGNELGDE----------GAR------ 302

Query: 828 QESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKIL-------TIFTSIDVSNNQFEGE 880
              + L     +L +L+      + +   +                   + +SNN+ E  
Sbjct: 303 LLCETLLEPGCQLESLW------VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356

Query: 881 ----IPEMLGDFDALL-VLNMSNNNFKGQ----IPATLGNLKELGSLDLSHNQLS 926
               + + LG   ++L VL +++ +        + ATL     L  LDLS+N L 
Sbjct: 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.2 bits (144), Expect = 4e-09
 Identities = 63/344 (18%), Positives = 108/344 (31%), Gaps = 72/344 (20%)

Query: 652 FSLASNNLSGGIPLSLCNAF-DLQVLDLSDNHLT----GSIPSCLVSSNILKVLKLRNNE 706
             +    LS      L       QV+ L D  LT      I S L  +  L  L LR+NE
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 707 FLGTVPQVIG-----NECSLRTLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQLNG 757
                   +        C ++ L L    L     G L  +L    +L+ L +  N L  
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127

Query: 758 S-----FPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN-AFAL-----LQIIDISSNNFS 806
           +         L+   +L  L L+  +    +        A  L      + + +S+N+ +
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCS----LSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 807 GNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSME----LAK 862
                       G++         Q LK    +L  L       L + G++ +    L  
Sbjct: 184 E----------AGVR------VLCQGLKDSPCQLEALK------LESCGVTSDNCRDLCG 221

Query: 863 ILTIFTSI---DVSNNQFEGE-----IPEMLGDFDALLVLNMSNNNFKGQ----IPATLG 910
           I+    S+    + +N+          P +L     L  L +       +    +   L 
Sbjct: 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281

Query: 911 NLKELGSLDLSHNQLSGK----IPEKLATLNF-LSVLKLSQNLL 949
             + L  L L+ N+L  +    + E L      L  L +     
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 5e-07
 Identities = 64/346 (18%), Positives = 111/346 (32%), Gaps = 76/346 (21%)

Query: 654 LASNNLSGGIPLSLCNAFD-----LQVLDLSDNHLT----GSIPSCLVSSNILKVLKLRN 704
           L SN L       +          +Q L L +  LT    G + S L +   L+ L L +
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 705 NEFLGTVPQVIG-----NECSLRTLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQL 755
           N       Q++       +C L  L L    L       L   L      + L V  N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 756 NGS-FPFWLETLP----QLRVLVLQSNNYDGSIKDTQTAN-AFAL-----LQIIDISSNN 804
           N +      + L     QL  L L+S      +      +    +     L+ + + SN 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCG----VTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 805 FSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSME----L 860
                         GM       +    L      L  L+      +   G++ +    L
Sbjct: 239 LGD----------VGMA------ELCPGLLHPSSRLRTLW------IWECGITAKGCGDL 276

Query: 861 AKILTIFTSI---DVSNNQFEGE----IPEMLGDFD-ALLVLNMSNNNFKGQ----IPAT 908
            ++L    S+    ++ N+   E    + E L +    L  L + + +F         + 
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 909 LGNLKELGSLDLSHNQLSGK----IPEKLATLN-FLSVLKLSQNLL 949
           L   + L  L +S+N+L       + + L      L VL L+   +
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 60/318 (18%), Positives = 93/318 (29%), Gaps = 62/318 (19%)

Query: 429 SIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKG---LNVLRLS 485
           S+E LL   +      +      SLSL+ +     ++   +     ++ G   L  L L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 486 SNKFSGFITLEMF----KDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITE 541
           + + +G     +      DL  L    +S       ++     + P +  L ++      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 542 FP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLSHNMLEAFEKPGPNL 598
           F    +R    L  LDLS+N   GE    +         L  L L +  +E        L
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 599 TS--TVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLAS 656
            +    L  LDL  N L+ +                                A      S
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAG------------------------------APSCDWPS 253

Query: 657 NNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIG 716
                           L  L+LS   L   +P  L +   L VL L  N  L   P    
Sbjct: 254 Q---------------LNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYNR-LDRNPSPDE 294

Query: 717 NECSLRTLDLSQNHLAGS 734
               +  L L  N    S
Sbjct: 295 LP-QVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 51/310 (16%), Positives = 89/310 (28%), Gaps = 50/310 (16%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPD---FLTNFSSLQYLHL 267
            S   +L   D        + + K   L  L +    + S +      +   S LQ L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 268 SLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDS 327
               + G  P  +          ++  +    +   +    Q  +               
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--------------- 147

Query: 328 INNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFA 387
                 L+ L ++  +              L  +D S N   G     ++          
Sbjct: 148 ---KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP------- 197

Query: 388 HNSFTGTIPLSYGDQLISLQVLDLRNN---SLQGIIPKSLYTKQSIESLLLGQNKFHGQL 444
                         +  +LQVL LRN    +  G+       +  ++ L L  N      
Sbjct: 198 -------------LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 445 EKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQL 504
                     L  ++ S   L+  VP+ +     L+VL LS N+           +L Q+
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQ-VPKGLPA--KLSVLDLSYNRLD---RNPSPDELPQV 298

Query: 505 GTLELSENNF 514
           G L L  N F
Sbjct: 299 GNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 49/292 (16%), Positives = 82/292 (28%), Gaps = 39/292 (13%)

Query: 407 QVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQL--EKFQNASSLSLREMDFSQNK 464
            +L   +          +    S++ L +   +   ++     +      L+E+     +
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS----ENNFSFNVSG 520
           + G  P  + +  G ++  L+    S         +L+Q     L         S N S 
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNF-----LRNQTNLFHLDLSNNRIKGEIPNWTWNVGD 575
               +FP + TL LS                     L  L L N  ++      +     
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 576 GK-LVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKF 634
              L  L+LSHN L            + L  L+L    L+      PA +  LD S N+ 
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRL 286

Query: 635 TTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGS 686
                                        P  L     +  L L  N    S
Sbjct: 287 D------------------------RNPSPDELPQ---VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 54/288 (18%), Positives = 87/288 (30%), Gaps = 34/288 (11%)

Query: 674 QVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ---VIGNECSLRTLDLSQNH 730
            +L   D        + ++ S  LK L +R       +      +     L+ L L    
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 731 LAGSLPKSLSKCT--SLEVLDVGKNQLNGSFPFWLE----TLPQLRVLVLQSNNYDGSIK 784
           + G+ P  L + T   L +L++          +  E      P L+VL +   +      
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 785 DTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLY 844
           +      F  L  +D+S N   G                       +      L L N  
Sbjct: 167 EQ--VRVFPALSTLDLSDNPELGERGLIS------------ALCPLKFPTLQVLALRNAG 212

Query: 845 YQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDF-DALLVLNMSNNNFKG 903
            +        G+   LA        +D+S+N           D+   L  LN+S    K 
Sbjct: 213 MET-----PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 904 QIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVG 951
                   L  L   DLS+N+L    P     L  +  L L  N  + 
Sbjct: 268 VPKGLPAKLSVL---DLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 55/282 (19%), Positives = 86/282 (30%), Gaps = 43/282 (15%)

Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRL--FSLTHLNLSYSGFSGHIPLEISSLKML 158
           + +     L+ L +    + S         L    L  L L     +G  P  +      
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 159 VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILS 218
               L+         LR  +       L  L++                  +   L++LS
Sbjct: 122 DLNILN---------LRNVSWATRDAWLAELQQW-----------------LKPGLKVLS 155

Query: 219 LPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLT----NFSSLQYLHLS---LCG 271
           +   H        +     L+ L+L  N    E           F +LQ L L    +  
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 272 LYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPDSIN 329
             G           L  LD+S N +L  +         SQL  + LS T    ++P  + 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL- 272

Query: 330 NLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS 371
             A L  L+LS  N     P S   L ++ N+    N F  S
Sbjct: 273 -PAKLSVLDLS-YNRLDRNP-SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 20/231 (8%)

Query: 593 KPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYA--V 650
             G      +L  +D  +++ Q +  I   S+  L     +  + I +     +  +   
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 651 FFSLASNNLSGGIPLSLCNAF--DLQVLDLSDNHLTG------SIPSCLVSSNILKVLKL 702
             +L +  ++G  P  L  A   DL +L+L +            +   L     LKVL +
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG--LKVLSI 156

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKC----TSLEVLDVGKNQLN-- 756
                L    + +    +L TLDLS N   G      + C     +L+VL +    +   
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 757 -GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFS 806
            G          QL+ L L  N+   +          + L  +++S     
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-SQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 47/243 (19%), Positives = 74/243 (30%), Gaps = 38/243 (15%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLF-----SLTHLNLS 140
           L + +  +TG             L  LNL + S   +   +    L       L  L+++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--ATRDAWLAELQQWLKPGLKVLSIA 157

Query: 141 YSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDIS 200
            +        ++     L +LDLS +  +    L  A        L  L           
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL----------- 206

Query: 201 GADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPD-FLTNF 259
                     L N  + +       G   +  +    L  L+L  N L            
Sbjct: 207 ---------ALRNAGMETPS-----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 260 SSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETR 319
           S L  L+LS  GL  +VP+ +     L  LD+S N  L    P      Q+  + L    
Sbjct: 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN-RLD-RNPSPDELPQVGNLSLKGNP 307

Query: 320 FSG 322
           F  
Sbjct: 308 FLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 32/242 (13%)

Query: 720 SLRTLDLSQNHLAGSLP-KSLSKCTSLEVLDVGKNQLNGSFPFW---LETLPQLRVLVLQ 775
           SL  L    +  A       + K  SL+ L V   ++     F    +  +  L+ L L+
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 776 SNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKF 835
           +    G+            L I+++ + +++                    +  +++ ++
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-----------------AWLAELQQW 146

Query: 836 VYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEM----LGDFDAL 891
           +   L  L    +    +   S E  ++    +++D+S+N   GE   +       F  L
Sbjct: 147 LKPGLKVLSIAQAH---SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 892 LVLNMSNNNFK---GQIPATLGNLKELGSLDLSHNQLSGKIPEKL-ATLNFLSVLKLSQN 947
            VL + N   +   G   A      +L  LDLSHN L            + L+ L LS  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 948 LL 949
            L
Sbjct: 264 GL 265

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 11/210 (5%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
              + L GN +S           +L  L L    L  R+    F  +  L  LD+S N+ 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 297 LTGSLPE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFG 353
           L  S+    F    +L  + L         P     LA L+ L L D N   ++P  +F 
Sbjct: 93  LR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFR 150

Query: 354 NLTELINIDFSRNNFSGSLP--SFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDL 411
           +L  L ++    N  S S+P  +F   + +  L    N     +       L  L  L L
Sbjct: 151 DLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYL 208

Query: 412 RNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
             N+L  +  ++L   ++++ L L  N + 
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 8e-15
 Identities = 46/212 (21%), Positives = 71/212 (33%), Gaps = 19/212 (8%)

Query: 409 LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL 468
                  LQ + P  +    + + + L  N+    +      +  +L  +    N L  +
Sbjct: 16  TSCPQQGLQAV-PVGIPA--ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARI 71

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
              +   +  L  L LS N     +    F  L +L TL L          G    +   
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AA 130

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNM 587
           +  L L    +   P +  R+  NL HL L  NRI   +P   +  G   L  L L  N 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFR-GLHSLDRLLLHQNR 188

Query: 588 L-----EAFEKPGPNLTSTVLAVLDLHSNMLQ 614
           +      AF     +L    L  L L +N L 
Sbjct: 189 VAHVHPHAFR----DLGR--LMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 6e-13
 Identities = 45/214 (21%), Positives = 78/214 (36%), Gaps = 11/214 (5%)

Query: 210 ILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSL 269
           I +  + + L    ++    +S    + LT L L  N L+       T  + L+ L LS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 270 CGLYGRVPEKIFL-MPSLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELSETRFSGKLPD 326
                 V    F  +  L  L +     L   L    F   + L+ + L +        D
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRC-GLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 327 SINNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSRNNFSGSLPS--FASSNKVIS 383
           +  +L  L  L L   N   S+P  +F  L  L  +   +N  +  +    F    ++++
Sbjct: 148 TFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMT 205

Query: 384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQ 417
           L    N+ +  +P      L +LQ L L +N   
Sbjct: 206 LYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 10/190 (5%)

Query: 184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSS-LSKLQLLTHLN 242
           +   NL  L+L    ++  D     + L+ L  L L D      +  +    L  L  L+
Sbjct: 53  RACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111

Query: 243 LDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSNLTGSL 301
           LD   L    P      ++LQYL+L    L   +P+  F  + +L  L +  N  ++ S+
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN-RIS-SV 168

Query: 302 PE--FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS-FGNLTEL 358
           PE  F     L  + L + R +   P +  +L  L  L L   N   ++P+     L  L
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRAL 227

Query: 359 INIDFSRNNF 368
             +  + N +
Sbjct: 228 QYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 43/197 (21%), Positives = 69/197 (35%), Gaps = 12/197 (6%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKML 158
           ++S    + L  L L  N L      + F  L  L  L+LS +     +       L  L
Sbjct: 49  AASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107

Query: 159 VSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILS 218
            +L L   GL   +         L + L  L+ LYL    +           L NL  L 
Sbjct: 108 HTLHLDRCGLQE-LG------PGLFRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLF 159

Query: 219 LPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPE 278
           L    ++     +   L  L  L L  N ++   P    +   L  L+L    L   +P 
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPT 218

Query: 279 KIFL-MPSLCFLDVSSN 294
           +    + +L +L ++ N
Sbjct: 219 EALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 57/263 (21%), Positives = 76/263 (28%), Gaps = 63/263 (23%)

Query: 523 SNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
             +      + L   +I+  P    R   NL  L L +N +   I    +  G   L  L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFT-GLALLEQL 85

Query: 582 NLSHNML------EAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFT 635
           +LS N          F      L    L  L L    LQ    + P              
Sbjct: 86  DLSDNAQLRSVDPATFH----GLGR--LHTLHLDRCGLQE---LGPG------------- 123

Query: 636 TNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSN 695
                         +F  LA+                LQ L L DN L  ++P       
Sbjct: 124 --------------LFRGLAA----------------LQYLYLQDNALQ-ALPDDTFRDL 152

Query: 696 I-LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQ 754
             L  L L  N       +      SL  L L QN +A   P +      L  L +  N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 755 LNGSFPFWLETLPQLRVLVLQSN 777
           L+      L  L  L+ L L  N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 7e-11
 Identities = 41/202 (20%), Positives = 66/202 (32%), Gaps = 13/202 (6%)

Query: 621 PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSD 680
           PA+   +    N+ +  +P              L SN L+     +      L+ LDLSD
Sbjct: 31  PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 681 NHLTGSIPS-CLVSSNILKVLKLRNNEFLGTVPQ-VIGNECSLRTLDLSQNHLAGSLPKS 738
           N    S+          L  L L     L  +   +     +L+ L L  N L      +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 739 LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFA---LL 795
                +L  L +  N+++         L  L  L+L  N     +      +AF     L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR----VAHVH-PHAFRDLGRL 203

Query: 796 QIIDISSNNFSGNLPARWFQSW 817
             + + +NN S  LP       
Sbjct: 204 MTLYLFANNLS-ALPTEALAPL 224

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 50/247 (20%), Positives = 79/247 (31%), Gaps = 33/247 (13%)

Query: 704 NNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWL 763
             + L  VP  I    + + + L  N ++     S   C +L +L +  N L        
Sbjct: 19  PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 764 ETLPQLRVLVLQSNNYDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGM 820
             L  L  L L  N    S+        F     L  + +        L    F+   G+
Sbjct: 77  TGLALLEQLDLSDNAQLRSV----DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR---GL 128

Query: 821 KKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGE 880
                       L+++YL+ + L      T  +          L   T + +  N+    
Sbjct: 129 AA----------LQYLYLQDNALQALPDDTFRD----------LGNLTHLFLHGNRISSV 168

Query: 881 IPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLS 940
                    +L  L +  N      P    +L  L +L L  N LS    E LA L  L 
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 941 VLKLSQN 947
            L+L+ N
Sbjct: 229 YLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 46/258 (17%), Positives = 74/258 (28%), Gaps = 57/258 (22%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
             Q + L  N ++    +   +   L +L L +N               L  LDLS N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 732 AGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790
             S+  +       L  L + +  L    P     L  L+ L LQ N     ++     +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA----LQALP-DD 147

Query: 791 AFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD 847
            F     L  + +  N  S ++P R F+                        L +L    
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRG-----------------------LHSL---- 179

Query: 848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA 907
                                 + +  N+     P    D   L+ L +  NN       
Sbjct: 180 --------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 908 TLGNLKELGSLDLSHNQL 925
            L  L+ L  L L+ N  
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 45/231 (19%), Positives = 78/231 (33%), Gaps = 31/231 (13%)

Query: 603 LAVLDLHSNML----QGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNN 658
              + LH N +      SF     ++  L    N     I       +       L+ N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNA 91

Query: 659 LSGGIPLSLCNAFD----LQVLDLSDNHLTGSIPSC----LVSSNILKVLKLRNNEFLGT 710
               +       F     L  L L    L   +       L +   L+ L L++N  L  
Sbjct: 92  QLRSVDP---ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAA---LQYLYLQDNA-LQA 143

Query: 711 VP-QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQL 769
           +P     +  +L  L L  N ++    ++     SL+ L + +N++    P     L +L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 770 RVLVLQSNNYDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSW 817
             L L +NN    +       A A    LQ + ++ N +  +  AR   +W
Sbjct: 204 MTLYLFANN----LSALP-TEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 40/240 (16%), Positives = 73/240 (30%), Gaps = 63/240 (26%)

Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDG 781
            T    Q  L  ++P  +    + + + +  N+++            L +L L SN    
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--- 67

Query: 782 SIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYL 838
            +     A AF    LL+ +D+S N    ++    F                        
Sbjct: 68  -LA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG---------------------- 103

Query: 839 ELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPE-MLGDFDALLVLNMS 897
            L  L                         ++ +     + E+   +     AL  L + 
Sbjct: 104 -LGRL------------------------HTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQ 137

Query: 898 NNNFKGQIPA-TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRG 956
           +N  +  +P  T  +L  L  L L  N++S         L+ L  L L QN +   +   
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPH 195

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 76.1 bits (187), Expect = 2e-14
 Identities = 76/499 (15%), Positives = 149/499 (29%), Gaps = 75/499 (15%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLE-------- 151
             S ++++R     +   + Y+    +   R   +  + L          L         
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYV 93

Query: 152 -------ISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGID-ISGAD 203
                   SS   L  + L          +    LE + K+  N + L L   +  S   
Sbjct: 94  YPWIEAMSSSYTWLEEIRLKRM------VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147

Query: 204 WGPILSILSNLRILSLPDCHVAGPIHSSLSKLQL----LTHLNLDGNDLSSEVPD----- 254
              I +   NL+ L L +  V       LS        L  LN+  + L+SEV       
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI--SCLASEVSFSALER 205

Query: 255 FLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLT------GSLPEFPPSS 308
            +T   +L+ L L+      ++   +   P L  L     +         G         
Sbjct: 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265

Query: 309 QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFG-SIPSSFGNLTELINIDFSRNN 367
           +L+ +          LP   +  + L  L LS        +        +L  +      
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI 325

Query: 368 FSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTK 427
               L   AS+ K                         L+ L +  +    + P    T+
Sbjct: 326 EDAGLEVLASTCK------------------------DLRELRVFPSEPFVMEPNVALTE 361

Query: 428 QSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSN 487
           Q + S+ +G  K    L   +  ++ +L  +  ++  +       I       +     +
Sbjct: 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421

Query: 488 KFSGFITLEMFKDLRQLGTLELSE--NNFSFNVSGSNSNMFPKIGTLKLSSCKITE--FP 543
              GF  +   +  + L  L LS    +  F   G+ +    K+  L ++    ++    
Sbjct: 422 --IGFGAI--VEHCKDLRRLSLSGLLTDKVFEYIGTYA---KKMEMLSVAFAGDSDLGMH 474

Query: 544 NFLRNQTNLFHLDLSNNRI 562
           + L    +L  L++ +   
Sbjct: 475 HVLSGCDSLRKLEIRDCPF 493

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 19/183 (10%)

Query: 107 QRLQHLNLADNSLYSSPFPSGF---------DRLFSLTHLNLSYSGFSGHIPLEIS-SLK 156
           + L+ L +  +  +                      L  +       +    + I+ +  
Sbjct: 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397

Query: 157 MLVSLDLSASGLVAPIQLRR----ANLEKLVKNLTNLEELYLGGIDISGADWGPILSILS 212
            +    L      AP  L           +V++  +L  L L G+ ++   +  I +   
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAK 456

Query: 213 NLRILSLPDCHV--AGPIHSSLSKLQLLTHLNLDGNDLSSE-VPDFLTNFSSLQYLHLSL 269
            + +LS+        G +H  LS    L  L +       + +    +   +++ L +S 
Sbjct: 457 KMEMLSVAFAGDSDLG-MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Query: 270 CGL 272
           C +
Sbjct: 516 CSV 518

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 56/314 (17%), Positives = 118/314 (37%), Gaps = 31/314 (9%)

Query: 82  HVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY 141
           + I +    S +T     + +  DL  +  L+     + +     G   L +L  L L  
Sbjct: 20  NAIKIAAGKSNVTD----TVTQADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72

Query: 142 SGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISG 201
           +  +  +   + +L  +  L+LS + L         N+  +   L +++ L L    I+ 
Sbjct: 73  NQIT-DLA-PLKNLTKITELELSGNPL--------KNVSAI-AGLQSIKTLDLTSTQITD 121

Query: 202 ADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSS 261
                 L+ LSNL++L L    +     S L+ L  L +L++    +S      L N S 
Sbjct: 122 VTP---LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSK 174

Query: 262 LQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFS 321
           L  L      +       +  +P+L  + + +N      +     +S L ++ L+    +
Sbjct: 175 LTTLKADDNKI--SDISPLASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLTNQTIT 230

Query: 322 GKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKV 381
            +     NNL +   ++          P++  +     + + + N  S       + N+ 
Sbjct: 231 NQPVFYNNNLVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTSFINNVSYTFNQS 288

Query: 382 ISLKFAHNSFTGTI 395
           ++ K     F+GT+
Sbjct: 289 VTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 38/269 (14%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDF 460
             L +   +    +++   + ++      I +L          +E  Q  ++L    ++ 
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEGVQYLNNL--IGLEL 70

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
             N++  L P  +  +  +  L LS N       +     L+ + TL+L+    +     
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQIT---DV 122

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
           +       +  L L   +IT     L   TNL +L + N ++  ++          KL  
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTPLANLS---KLTT 177

Query: 581 LNLSHNMLEAFEKPG--PNLTS-----------------TVLAVLDLHSNMLQGSFPIPP 621
           L    N +         PNL                   + L ++ L +  +        
Sbjct: 178 LKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYN 237

Query: 622 ASIIFLDYSENKFTTNI-PYNIGNYINYA 649
            +++  +  +      I P  I +   YA
Sbjct: 238 NNLVVPNVVKGPSGAPIAPATISDNGTYA 266

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 49/274 (17%), Positives = 101/274 (36%), Gaps = 28/274 (10%)

Query: 152 ISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSIL 211
             +L   + +    S +   +            +L  +  L   G  ++       +  L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQ---------ADLDGITTLSAFGTGVTTI---EGVQYL 62

Query: 212 SNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG 271
           +NL  L L D  +     + L  L  +T L L GN L +     +    S++ L L+   
Sbjct: 63  NNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQ 118

Query: 272 LYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNL 331
           +       +  + +L  L +  N  +T ++      + L+ + +   + S      + NL
Sbjct: 119 I--TDVTPLAGLSNLQVLYLDLN-QIT-NISPLAGLTNLQYLSIGNAQVSD--LTPLANL 172

Query: 332 ALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSF 391
           + L  L+  D N    I S   +L  LI +    N  S  +   A+++ +  +   + + 
Sbjct: 173 SKLTTLKADD-NKISDI-SPLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTI 229

Query: 392 TGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLY 425
           T   P+ Y + L+      ++  S   I P ++ 
Sbjct: 230 T-NQPVFYNNNLVVP--NVVKGPSGAPIAPATIS 260

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 51/298 (17%), Positives = 101/298 (33%), Gaps = 68/298 (22%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
           +   +N++  +  +  +   +  L      +T +I   +   N L  L+L++N+   T  
Sbjct: 25  AAGKSNVTDTVTQADLDG--ITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQI--TDL 78

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
             + N   +  L+LS N L      +++   S++ LD+   Q+    P  L  L  L+VL
Sbjct: 79  APLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL 134

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
            L  N     I +         LQ + I +   S                          
Sbjct: 135 YLDLNQ----ITNISPLAGLTNLQYLSIGNAQVS-------------------------- 164

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
                 +L+ L                    L+  T++   +N+   +I   L     L+
Sbjct: 165 ------DLTPL------------------ANLSKLTTLKADDNKIS-DISP-LASLPNLI 198

Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLV 950
            +++ NN      P  L N   L  + L++  ++ +       L   +V+K      +
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 20/212 (9%)

Query: 596 PNLTSTVLAVLDLHSNMLQGSFPIPP-ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSL 654
           P L +     +    + +  +        I  L       T  I   +    N  +   L
Sbjct: 16  PALAN--AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GVQYLNN-LIGLEL 70

Query: 655 ASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQV 714
             N ++   PL   N   +  L+LS N L  ++ + +     +K L L + +     P  
Sbjct: 71  KDNQITDLAPLK--NLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP-- 124

Query: 715 IGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVL 774
           +    +L+ L L  N +  +    L+  T+L+ L +G  Q++   P  L  L +L  L  
Sbjct: 125 LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA 180

Query: 775 QSNNYDGSIKDTQTANAFALLQIIDISSNNFS 806
             N     I D     +   L  + + +N  S
Sbjct: 181 DDNK----ISDISPLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 46/252 (18%), Positives = 78/252 (30%), Gaps = 68/252 (26%)

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
              +    +    TV     +   + TL      +  ++   +    +L  L++  NQ+ 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT 76

Query: 757 GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQS 816
              P  L+ L ++  L L  N     +K+         ++ +D++S              
Sbjct: 77  DLAP--LKNLTKITELELSGNP----LKNVSAIAGLQSIKTLDLTST------------- 117

Query: 817 WRGMKKRTKESQESQILKFVYLE-LSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNN 875
                         QI     L  LSNL                          + +  N
Sbjct: 118 --------------QITDVTPLAGLSNL------------------------QVLYLDLN 139

Query: 876 QFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLAT 935
           Q    I   L     L  L++ N       P  L NL +L +L    N++S  I   LA+
Sbjct: 140 QIT-NISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DISP-LAS 193

Query: 936 LNFLSVLKLSQN 947
           L  L  + L  N
Sbjct: 194 LPNLIEVHLKNN 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 24/251 (9%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMD 459
           D        +L+  S+   + ++      I+ ++   +     ++  Q    L ++ ++ 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNS----DIKSVQGIQYLPNVTKLF 74

Query: 460 FSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVS 519
            + NKL  +  + +  +K L  L L  NK      L   KDL++L +L L  N  S +++
Sbjct: 75  LNGNKLTDI--KPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DIN 128

Query: 520 GSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
           G      P++ +L L + KIT+    L   T L  L L +N+I  +I          KL 
Sbjct: 129 GLVHL--PQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLT---KLQ 181

Query: 580 HLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNI- 638
           +L LS N +         L +  L VL+L S           ++++  +  +N   + + 
Sbjct: 182 NLYLSKNHISDLR-ALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

Query: 639 PYNIGNYINYA 649
           P  I +  +Y 
Sbjct: 239 PEIISDDGDYE 249

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 60/302 (19%), Positives = 106/302 (35%), Gaps = 33/302 (10%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           I    S          NL   S+         + L S+  +  + S     +   I  L 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SVQ-GIQYLP 68

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGG---IDISGADWGPILSILSN 213
            +  L L+ + L         +++ L  NL NL  L+L      D+S       L  L  
Sbjct: 69  NVTKLFLNGNKLT--------DIKPL-ANLKNLGWLFLDENKVKDLSS------LKDLKK 113

Query: 214 LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLY 273
           L+ LSL    ++    + L  L  L  L L  N ++      L+  + L  L L    + 
Sbjct: 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI- 168

Query: 274 GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLAL 333
                 +  +  L  L +S N +++  L        L V+EL       K  +  +NL +
Sbjct: 169 -SDIVPLAGLTKLQNLYLSKN-HIS-DLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTG 393
              ++ +D +       S     E  N+ +    F+  + SF    + +++  A   F G
Sbjct: 226 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV-SF-IFYQPVTIGKAKARFHG 283

Query: 394 TI 395
            +
Sbjct: 284 RV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 46/287 (16%), Positives = 95/287 (33%), Gaps = 20/287 (6%)

Query: 208 LSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267
               +     +L    V      + ++L  +  +  + +D+ S     +    ++  L L
Sbjct: 20  DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL 75

Query: 268 SLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDS 327
           +   L     + +  + +L +L +  N  +   L       +LK + L     S  + + 
Sbjct: 76  NGNKL--TDIKPLANLKNLGWLFLDEN-KVK-DLSSLKDLKKLKSLSLEHNGIS-DI-NG 129

Query: 328 INNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFA 387
           + +L  LE L L +     +  +    LT+L  +    N  S  +   A   K+ +L  +
Sbjct: 130 LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLS 186

Query: 388 HNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKF 447
            N  +    L+    L +L VL+L +                  ++        G L   
Sbjct: 187 KNHISDLRALAG---LKNLDVLELFSQECLNKPINHQSNLVVPNTV----KNTDGSLVTP 239

Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFIT 494
           +  S     E    +  L     E  F       +  +  +F G +T
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVT 286

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 49/254 (19%), Positives = 86/254 (33%), Gaps = 42/254 (16%)

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
                L+       V Q      S+  +  + + +  S+ + +    ++  L +  N+L 
Sbjct: 26  TIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 757 GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQS 816
              P  L  L  L  L L  N     +KD  +      L+ + +  N  S          
Sbjct: 82  DIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS---------D 126

Query: 817 WRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQ 876
             G+    +       L+   L L N          NK   + +   LT   ++ + +NQ
Sbjct: 127 INGLVHLPQ-------LE--SLYLGN----------NKITDITVLSRLTKLDTLSLEDNQ 167

Query: 877 FEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATL 936
              +I   L     L  L +S N+    + A L  LK L  L+L   +   K     + L
Sbjct: 168 IS-DIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 937 NFLSVLKLSQNLLV 950
              + +K +   LV
Sbjct: 224 VVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 65/285 (22%)

Query: 495 LEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFH 554
           +       +     L + + +        N    I  +  ++  I      ++   N+  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTK 72

Query: 555 LDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQ 614
           L L+ N++  +I           L  L L  N ++       +L    L  L L  N + 
Sbjct: 73  LFLNGNKLT-DIKPLANLK---NLGWLFLDENKVKDLS-SLKDLKK--LKSLSLEHNGI- 124

Query: 615 GSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQ 674
                                ++I   + +                            L+
Sbjct: 125 ---------------------SDIN-GLVHLPQ-------------------------LE 137

Query: 675 VLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGS 734
            L L +N +T    + L     L  L L +N+   +    +     L+ L LS+NH+  S
Sbjct: 138 SLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHI--S 191

Query: 735 LPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY 779
             ++L+   +L+VL++   +           L     +     + 
Sbjct: 192 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 56/347 (16%), Positives = 99/347 (28%), Gaps = 75/347 (21%)

Query: 451 SSLSLREMDFSQNKL--QGLVP--ESIFQIKGLNVLRLSSNKFS--GFITL-EMFKDLRQ 503
           +  S+       + +  +        + +   +  + LS N         L E     + 
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 504 LGTLELSENNFSFNVSGSNSNMF---------PKIGTLKLSSCKITE-----FPNFLRNQ 549
           L   E S+             +          PK+ T++LS             +FL   
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 550 TNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLH 609
           T L HL L NN +           G      +      L+          +  L  +   
Sbjct: 122 TPLEHLYLHNNGL-----------GPQAGAKIA---RALQELAVNKKAKNAPPLRSIICG 167

Query: 610 SNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSG-GIPLSLC 668
            N L+              +  ++    +               +  N +   GI   L 
Sbjct: 168 RNRLENGS----MKEWAKTFQSHRLLHTV--------------KMVQNGIRPEGIEHLLL 209

Query: 669 NAF----DLQVLDLSDNHLTG----SIPSCLVSSNILKVLKLRNN-------EFLGTVPQ 713
                  +L+VLDL DN  T     ++   L S   L+ L L +          +     
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 714 VIGNECSLRTLDLSQNHL----AGSLPKSL-SKCTSLEVLDVGKNQL 755
            + N   L+TL L  N +      +L   +  K   L  L++  N+ 
Sbjct: 270 KLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 51/340 (15%), Positives = 81/340 (23%), Gaps = 91/340 (26%)

Query: 529 IGTLKLSSCKITE-----FPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG------- 576
           I    L    IT          L    ++  + LS N I           G         
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-----------GTEAARWLSE 54

Query: 577 ------KLVHLNLSHNMLEAFEKPGPN---------LTSTVLAVLDLHSNMLQ------- 614
                  L     S       +   P          L    L  + L  N          
Sbjct: 55  NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114

Query: 615 GSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQ 674
             F      +  L    N         I   +        A N               L+
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP------------LR 162

Query: 675 VLDLSDNHLTG----SIPSCLVSSNILKVLKLRNNEF-----LGTVPQVIGNECSLRTLD 725
            +    N L             S  +L  +K+  N          + + +     L+ LD
Sbjct: 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 726 LSQNHL----AGSLPKSLSKCTSLEVLDVGKNQL--NGSFPFWLETL-----PQLRVLVL 774
           L  N      + +L  +L    +L  L +    L   G+    ++         L+ L L
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV-VDAFSKLENIGLQTLRL 281

Query: 775 QSNNYDGSIKDTQTANAFA--------LLQIIDISSNNFS 806
           Q N     I+                  L  ++++ N FS
Sbjct: 282 QYNE----IEL-DAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 43/263 (16%), Positives = 79/263 (30%), Gaps = 44/263 (16%)

Query: 720 SLRTLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQLNG----SFPFWLETLPQLRV 771
           S+    L  + +      S+   L +  S++ + +  N +           + +   L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 772 LVLQSNNYDGSIKDTQTANAFAL---------LQIIDISSNNFSGNLPARWFQSWRGMKK 822
               S+ + G +KD        L         L  + +S N F               + 
Sbjct: 65  AEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP----------TAQEP 113

Query: 823 RTKESQESQILKFVYLELSNLYYQDSVTLMN---KGLSMELAKILTIFTSIDVSNNQFEG 879
                 +   L+ +YL  + L  Q    +     +    + AK      SI    N+ E 
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 880 E----IPEMLGDFDALLVLNMSNNNF-----KGQIPATLGNLKELGSLDLSHNQLSGK-- 928
                  +       L  + M  N       +  +   L   +EL  LDL  N  +    
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 929 --IPEKLATLNFLSVLKLSQNLL 949
             +   L +   L  L L+  LL
Sbjct: 234 SALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 60/370 (16%), Positives = 113/370 (30%), Gaps = 94/370 (25%)

Query: 652 FSLASNNLSG---------GIPLSLCNAFDLQVLDLSDNHLTG----SIPSCLVSSNILK 698
           FS+   +L            +   L     ++ + LS N +       +   + S   L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 699 VLKLRNNEFLGTVPQVIGNEC-----------SLRTLDLSQNHL----AGSLPKSLSKCT 743
           + +  +  F G V   I                L T+ LS N         L   LSK T
Sbjct: 64  IAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 744 SLEVLDVGKNQL-------------NGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTAN 790
            LE L +  N L               +     +  P LR ++   N     +++  +  
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR----LEN-GSMK 177

Query: 791 AFAL-------LQIIDISSNNFSGNLPARWFQSWRGMKKRTKES-QESQILKFVYLELSN 842
            +A        L  + +  N               G++    E     Q LK   L+L +
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRP----------EGIEHLLLEGLAYCQELK--VLDLQD 225

Query: 843 LYYQDSVTLMNKGLSMELAKILTIFTS---IDVSNNQFEGE----IPEMLGDFD--ALLV 893
                  T  + G S  LA  L  + +   + +++          + +     +   L  
Sbjct: 226 ------NTFTHLG-SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 894 LNMSNNNFKGQ-----IPATLGNLKELGSLDLSHNQLS------GKIPEKLATLNFLSVL 942
           L +  N  +              + +L  L+L+ N+ S       +I E  +T     + 
Sbjct: 279 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338

Query: 943 KLSQNLLVGE 952
           +L     + +
Sbjct: 339 ELDDMEELTD 348

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 33/201 (16%)

Query: 87  DISSSFITGGINGSSSLFDLQRLQHLNLADNSLYS---SPFPSGFDRLFSLTHLNLSYSG 143
            +             +L    +L  + L+DN+       P      +   L HL L  +G
Sbjct: 74  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 144 FSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDI---S 200
                               + + +     L+   + K  KN   L  +  G   +   S
Sbjct: 134 LG----------------PQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 201 GADWGPILSILSNLRILSLPDCH-----VAGPIHSSLSKLQLLTHLNLDGNDLSSE---- 251
             +W         L  + +         +   +   L+  Q L  L+L  N  +      
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 252 VPDFLTNFSSLQYLHLSLCGL 272
           +   L ++ +L+ L L+ C L
Sbjct: 236 LAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 62/407 (15%), Positives = 127/407 (31%), Gaps = 94/407 (23%)

Query: 132 FSLTHLNLSYSGFSG----HIPLEISSLKMLVSLDLSASGL-VAPIQLRRANLEKLVKNL 186
           FS+   +L     +      +   +     +  + LS + +     +     L + + + 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARW----LSENIASK 59

Query: 187 TNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGN 246
            +LE      I            I   LR+L             +L K   L  + L  N
Sbjct: 60  KDLEIAEFSDIFTG----RVKDEIPEALRLLL-----------QALLKCPKLHTVRLSDN 104

Query: 247 DLSSE----VPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP 302
                    + DFL+  + L++L+L   GL         +  +L  L V+  +       
Sbjct: 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL--GPQAGAKIARALQELAVNKKAKN----- 157

Query: 303 EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINID 362
               +  L+ I     R       S+   A                  +F +   L  + 
Sbjct: 158 ----APPLRSIICGRNRLE---NGSMKEWA-----------------KTFQSHRLLHTVK 193

Query: 363 FSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSL--QGI- 419
             +N              ++    A+                 L+VLDL++N+    G  
Sbjct: 194 MVQNGIRP-----EGIEHLLLEGLAYCQ--------------ELKVLDLQDNTFTHLGSS 234

Query: 420 -IPKSLYTKQSIESLLLGQNKFHGQ-----LEKFQNASSLSLREMDFSQNKLQGLVPESI 473
            +  +L +  ++  L L       +     ++ F    ++ L+ +    N+++     ++
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 474 FQ-----IKGLNVLRLSSNKFS--GFITLEMFKDLRQLGTLELSENN 513
                  +  L  L L+ N+FS    +  E+ +     G  EL E +
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 42/315 (13%), Positives = 91/315 (28%), Gaps = 68/315 (21%)

Query: 334 LEDLELSDCNF----FGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHN 389
           ++++ LS           +  +  +  +L   +FS             + +++       
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 390 SFTGTIPLSYGDQLISLQVLDLRNNSL--QGIIP--KSLYTKQSIESLLLGQNKFHGQLE 445
                           L  + L +N+       P    L     +E L L  N    Q  
Sbjct: 94  P--------------KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-- 137

Query: 446 KFQNASSLS--LREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS--GFITL-EMFKD 500
                + ++  L+E+  ++                L  +    N+          + F+ 
Sbjct: 138 ---AGAKIARALQELAVNKKAKNA---------PPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 501 LRQLGTLELSENNFSFN-VSGSNSNMFPKIGTLK---LSSCKITE-----FPNFLRNQTN 551
            R L T+++ +N      +             LK   L     T          L++  N
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 552 LFHLDLSNNRIKGE----IPNWTWNVGDGKLVHLNLSHNML---------EAFEKPGPNL 598
           L  L L++  +       + +    + +  L  L L +N +            ++  P+L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 599 TSTVLAVLDLHSNML 613
                  L+L+ N  
Sbjct: 306 LF-----LELNGNRF 315

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 185 NLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLD 244
            + +L  + L  I+++       +    N++ L++ + H      + +S L  L  L + 
Sbjct: 42  QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIM 96

Query: 245 GNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEF 304
           G D++S+    L+  +SL  L +S       +  KI  +P +  +D+S N  +T  +   
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPL 155

Query: 305 PPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCN 343
               +LK + +            I +   L  L      
Sbjct: 156 KTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 23/189 (12%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 231 SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLD 290
           + +++  LT++ L   +++      +    +++ L ++                     +
Sbjct: 39  TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT----------------N 80

Query: 291 VSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS 350
            +  S L+           L+ + +     +     +++ L  L  L++S      SI +
Sbjct: 81  YNPISGLS----------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 351 SFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLD 410
               L ++ +ID S N     +    +  ++ SL    +       +        L  L 
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLY 187

Query: 411 LRNNSLQGI 419
             + ++ G 
Sbjct: 188 AFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 25/165 (15%), Positives = 60/165 (36%), Gaps = 11/165 (6%)

Query: 402 QLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLS-LREMDF 460
           Q+ SL  + L N ++  +          I+ L +           +   S LS L  +  
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYAHN--IKDLTINNI----HATNYNPISGLSNLERLRI 95

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
               +      ++  +  L +L +S +       L     L ++ +++LS N    ++  
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGE 565
             +   P++ +L +    + ++   + +   L  L   +  I G+
Sbjct: 155 LKTL--PELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 7e-11
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 13/142 (9%)

Query: 131 LFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLE 190
           + SLT++ L+    +    +E      +  L ++             N   +   L+NLE
Sbjct: 43  MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHA--------TNYNPI-SGLSNLE 91

Query: 191 ELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSS 250
            L + G D++       LS L++L +L +        I + ++ L  +  ++L  N   +
Sbjct: 92  RLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 251 EVPDFLTNFSSLQYLHLSLCGL 272
           ++   L     L+ L++   G+
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 656 SNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIP-SCLVSSNILKVLKLRNNEFLGTVPQV 714
               S    ++      L  + L++ ++T         +   +K L + N     T    
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHN---IKDLTINNIHA--TNYNP 83

Query: 715 IGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVL 774
           I    +L  L +    +      +LS  TSL +LD+  +  + S    + TLP++  + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 775 QSNNYDGSIKDTQTANAFALLQIIDISSNNFS 806
             N     I D         L+ ++I  +   
Sbjct: 144 SYNGA---ITDIMPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 26/188 (13%), Positives = 59/188 (31%), Gaps = 18/188 (9%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDF 460
               +     L  +S   I    +    S+  + L        L   + A ++  +++  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT-DLTGIEYAHNI--KDLTI 73

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
           +           I  +  L  LR+     +    +     L  L  L++S +    ++  
Sbjct: 74  NNIHATNY--NPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKG--EIPNWTWNVGDGKL 578
             + + PK+ ++ LS          L+    L  L++  + +     I ++       KL
Sbjct: 131 KINTL-PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP------KL 183

Query: 579 VHLNLSHN 586
             L     
Sbjct: 184 NQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 27/187 (14%), Positives = 62/187 (33%), Gaps = 10/187 (5%)

Query: 306 PSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSR 365
           P S  K         S     +   +  L  + L++ N    + +       + ++  + 
Sbjct: 18  PDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINN 75

Query: 366 NNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLY 425
            + + +    +  + +  L+      T +  +     L SL +LD+ +++    I   + 
Sbjct: 76  IHAT-NYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 426 TKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESIFQIKGLNVLRL 484
           T   + S+ L  N     +       +L  L+ ++   + +       I     LN L  
Sbjct: 134 TLPKVNSIDLSYNG---AITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYA 188

Query: 485 SSNKFSG 491
            S    G
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
               + +  L  L+ L +    + +S        L SLT L++S+S     I  +I++L 
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
            + S+DLS +G +  I          +K L  L+ L +    +        +     L  
Sbjct: 137 KVNSIDLSYNGAITDI--------MPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ 185

Query: 217 LSL 219
           L  
Sbjct: 186 LYA 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 868 TSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
             + ++N          +     L  L +   +        L  L  L  LD+SH+    
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 928 KIPEKLATLNFLSVLKLSQNLLVGEI 953
            I  K+ TL  ++ + LS N  + +I
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 22/139 (15%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 475 QIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKL 534
           Q+  L  + L++   +    L   +    +  L ++  + +   + +  +    +  L++
Sbjct: 42  QMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRI 95

Query: 535 SSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGD-GKLVHLNLSHNMLEAFE 592
               +T +    L   T+L  LD+S++     I      +    K+  ++LS+N      
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT---KINTLPKVNSIDLSYNGAITDI 152

Query: 593 KPGPNLTSTVLAVLDLHSN 611
            P   L    L  L++  +
Sbjct: 153 MPLKTLPE--LKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHN 923
           LT  T +D+S++  +  I   +     +  +++S N     I   L  L EL SL++  +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD 169

Query: 924 QLSGKIPEKLATLNFLSVLKLSQN 947
            +       +     L+ L     
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 29/210 (13%), Positives = 58/210 (27%), Gaps = 61/210 (29%)

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY 779
           SL  + L+  ++   L   +    +++ L +         P  +  L  L  L +   + 
Sbjct: 45  SLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD- 99

Query: 780 DGSIKDTQTANAFAL--LQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVY 837
              +   +  N   L  L ++DIS +                                + 
Sbjct: 100 ---VTSDKIPNLSGLTSLTLLDISHS---------------------------AHDDSIL 129

Query: 838 LELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMS 897
            +++ L                         SID+S N    +I   L     L  LN+ 
Sbjct: 130 TKINTL---------------------PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQ 167

Query: 898 NNNFKGQIPATLGNLKELGSLDLSHNQLSG 927
            +         + +  +L  L      + G
Sbjct: 168 FDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 27/196 (13%), Positives = 64/196 (32%), Gaps = 25/196 (12%)

Query: 498 FKD--LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHL 555
             D   +      L +++ + N++ +       +  + L++  +T+    +    N+  L
Sbjct: 17  IPDSTFKAYLNGLLGQSSTA-NITEAQ---MNSLTYITLANINVTDLTG-IEYAHNIKDL 71

Query: 556 DLSNNRIK--GEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPG-PNLTSTVLAVLDLHSNM 612
            ++N        I   +       L  L +    + + + P    LTS  L +LD+  + 
Sbjct: 72  TINNIHATNYNPISGLS------NLERLRIMGKDVTSDKIPNLSGLTS--LTLLDISHSA 123

Query: 613 LQGSFPIPPA---SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCN 669
              S          +  +D S N   T+I   +          ++  + +     +   +
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL-NIQFDGVHDYRGIE--D 179

Query: 670 AFDLQVLDLSDNHLTG 685
              L  L      + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 13/213 (6%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK--FQNASSLSLREMDFSQ 462
           +   L      L+ I   +      +E + + QN     +E   F N     L E+   +
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEK 88

Query: 463 -NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVS-G 520
            N L  + PE+   +  L  L +S+      +         Q   L++ +N     +   
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLS-NNRIKGEIPNWTWNVGDGKLV 579
           S   +  +   L L+   I E  N   N T L  L+LS NN ++ E+PN  ++ G    V
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFH-GASGPV 205

Query: 580 HLNLSHNMLEAFEKPGP-NLTSTVLAVLDLHSN 611
            L++S   + +    G  NL    L     ++ 
Sbjct: 206 ILDISRTRIHSLPSYGLENLKK--LRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 47/276 (17%), Positives = 82/276 (29%), Gaps = 56/276 (20%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
              L      L        + F  L+ + +S   +   +   +F  +P L  + +   +N
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 297 LTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFGNL 355
           L   +                       P++  NL  L+ L +S+      +P     + 
Sbjct: 92  LL-YIN----------------------PEAFQNLPNLQYLLISN-TGIKHLPDVHKIHS 127

Query: 356 TELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNS 415
            + + +D   N    ++                NSF G              +L L  N 
Sbjct: 128 LQKVLLDIQDNINIHTIE--------------RNSFVGLSFE--------SVILWLNKNG 165

Query: 416 LQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLREMDFSQNKLQGLVPESIF 474
           +Q I   +    Q  E  L   N       + F  AS      +D S+ ++  L P    
Sbjct: 166 IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS--GPVILDISRTRIHSL-PSYGL 222

Query: 475 QIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
           +   L  LR  S        L   + L  L    L+
Sbjct: 223 E--NLKKLRARST--YNLKKLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 49/277 (17%), Positives = 93/277 (33%), Gaps = 52/277 (18%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           +  E+ F   KL+ +   +      L  + +S N     I  ++F +L +L  + + + N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWN 572
                                    +        +N  NL +L +SN  IK  +P+    
Sbjct: 91  ------------------------NLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVH-K 124

Query: 573 VGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSEN 632
           +   + V L++  N          N+ +       +  N   G         + L  ++N
Sbjct: 125 IHSLQKVLLDIQDN---------INIHT-------IERNSFVG----LSFESVILWLNKN 164

Query: 633 KFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLV 692
                I  +  N           +NNL          A    +LD+S   +  S+PS  +
Sbjct: 165 GIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL 222

Query: 693 SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN 729
            +  LK L+ R+   L  +P  +    +L    L+  
Sbjct: 223 EN--LKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 37/255 (14%), Positives = 78/255 (30%), Gaps = 32/255 (12%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP-QVIGNECSLRTLDLSQ-N 729
           +   L      L             L+ +++  N+ L  +   V  N   L  + + + N
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 730 HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTA 789
           +L    P++     +L+ L +    +            Q  +L +Q N    +I+     
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 790 NAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSV 849
                  I+ ++ N     +    F               +Q+ +    + +NL    + 
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHNSAFNG-------------TQLDELNLSDNNNLEELPND 196

Query: 850 TLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNM-SNNNFKGQIPAT 908
                          +    +D+S  +    +P      + L  L   S  N K ++P  
Sbjct: 197 VFHG----------ASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLPT- 241

Query: 909 LGNLKELGSLDLSHN 923
           L  L  L    L++ 
Sbjct: 242 LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 15/220 (6%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKML 158
             +      L+ + ++ N +        F  L  L  + +  +    +I  E   +L  L
Sbjct: 47  KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106

Query: 159 VSLDLSASGLVAPIQLRRANLEKLVK-NLTNLEELYLGG-IDISGADWGPILSILSNLRI 216
             L +S +G+         +L  + K +      L +   I+I   +    + +     I
Sbjct: 107 QYLLISNTGIK--------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV 276
           L L    +    +S+ +  QL      D N+L     D     S    L +S   +   +
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSL 217

Query: 277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELS 316
           P       +L  L   S  NL   LP       L    L+
Sbjct: 218 PSYGLE--NLKKLRARSTYNLK-KLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 44/264 (16%), Positives = 78/264 (29%), Gaps = 32/264 (12%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
                  K+TE P+ L    N   L     +++  I    ++ G G L  + +S N +  
Sbjct: 13  VFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFS-GFGDLEKIEISQNDVLE 68

Query: 591 FEKPG--PNLTSTVLAVLDL-HSNMLQGSFPIPP------ASIIFLDYSENKFTTNIPYN 641
             +     NL    L  + +  +N L     I P       ++ +L  S       +P  
Sbjct: 69  VIEADVFSNLPK--LHEIRIEKANNLLY---INPEAFQNLPNLQYLLISNTGIKH-LPDV 122

Query: 642 IGNYINYAVFFSLASNNLSGGIPLSLCNAFD-----LQVLDLSDNHLTGSIPSCLVSSNI 696
              +    V   +  N     I     N+F        +L L+ N +     S    + +
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIER---NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

Query: 697 LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
            ++    NN        V         LD+S+  +       L     L        +  
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 239

Query: 757 GSFPFWLETLPQLRVLVLQSNNYD 780
            +     E L  L    L +    
Sbjct: 240 PTL----EKLVALMEASL-TYPSH 258

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 11/209 (5%)

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
           +L  + N     +          LQVLDL    +Q I   +  +   + +L+L  N    
Sbjct: 32  NLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 443 -QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQI-KGLNVLRLSSNKFSGFITLEMFKD 500
             L  F   SSL  +++   +  L  L         K L  L ++ N    F   E F +
Sbjct: 91  LALGAFSGLSSL--QKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 501 LRQLGTLELSENNF---SFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDL 557
           L  L  L+LS N               M     +L LS   +         +  L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 558 SNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
             N++K  +P+  ++     L  + L  N
Sbjct: 208 DTNQLK-SVPDGIFD-RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 53/260 (20%), Positives = 82/260 (31%), Gaps = 62/260 (23%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP-QVIGNECSLRTLDLSQNH 730
             + LDLS N L         S   L+VL L   E + T+      +   L TL L+ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87

Query: 731 LAGSLPKSLSKCTSLEVLDVGKNQLNG--SFPFWLETLPQLRVLVLQSNNYDGSIKDTQT 788
           +      + S  +SL+ L   +  L    +FP     L  L+ L +  N     I+  + 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHN----LIQSFKL 141

Query: 789 ANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYY 845
              F+    L+ +D+SSN    ++     +                        L  +  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV-----------------------LHQM-- 175

Query: 846 QDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFD--ALLVLNMSNNNFKG 903
                     L++ L          D+S N     I    G F    L  L +  N  K 
Sbjct: 176 --------PLLNLSL----------DLSLNPMN-FIQP--GAFKEIRLKELALDTNQLKS 214

Query: 904 QIPATLGNLKELGSLDLSHN 923
                   L  L  + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 50/226 (22%), Positives = 78/226 (34%), Gaps = 46/226 (20%)

Query: 100 SSSLFD-LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKM 157
            S  F     LQ L+L+   + +      +  L  L+ L L+ +     + L   S L  
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSS 101

Query: 158 LVSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
           L  L    + L        A+LE     +L  L+EL                  +++  I
Sbjct: 102 LQKLVAVETNL--------ASLENFPIGHLKTLKELN-----------------VAHNLI 136

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYG-- 274
            S         +    S L  L HL+L  N + S     L     +  L+LSL  L    
Sbjct: 137 QSF-------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL-DLSLNP 188

Query: 275 --RVPEKIFLMPSLCFLDVSSNSNLTGSLPE--FPPSSQLKVIELS 316
              +    F    L  L + +N  L  S+P+  F   + L+ I L 
Sbjct: 189 MNFIQPGAFKEIRLKELALDTN-QLK-SVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 34/211 (16%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
              L++L L  C +      +   L  L+ L L GN + S      +  SSLQ L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 271 GLYGRVPEKIFL-MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSIN 329
            L   +       + +L  L+V+ N               ++  +         LP+  +
Sbjct: 111 NL-ASLENFPIGHLKTLKELNVAHN--------------LIQSFK---------LPEYFS 146

Query: 330 NLALLEDLELSDCNFFGSIPS-SFGNLTEL----INIDFSRNNFSGSLPSFASSN-KVIS 383
           NL  LE L+LS      SI       L ++    +++D S N  +  +   A    ++  
Sbjct: 147 NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204

Query: 384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
           L    N    ++P    D+L SLQ + L  N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 50/265 (18%), Positives = 79/265 (29%), Gaps = 64/265 (24%)

Query: 523 SNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
            N+      L LS   +         +   L  LDLS   I+  I +  +      L  L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQ-SLSHLSTL 81

Query: 582 NLSHNML-----EAFEKPGPNLTSTVLAVLDLHSNMLQ----GSFPIPPASIIFLDYSEN 632
            L+ N +      AF     +L       L      L             ++  L+ + N
Sbjct: 82  ILTGNPIQSLALGAFSGL-SSLQK-----LVAVETNLASLENFPIGHLK-TLKELNVAHN 134

Query: 633 KFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLV 692
                      ++     F +L +                L+ LDLS N +  SI    +
Sbjct: 135 LIQ--------SFKLPEYFSNLTN----------------LEHLDLSSNKIQ-SIYCTDL 169

Query: 693 SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGK 752
               L  + L N                   LDLS N +   +     K   L+ L +  
Sbjct: 170 RV--LHQMPLLNLS-----------------LDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 753 NQLNGSFPFWLETLPQLRVLVLQSN 777
           NQL        + L  L+ + L +N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 23/124 (18%)

Query: 669 NAFD----LQVLDLSDNHLTGSIP----SCLVSSNILKVLKLRNNEFLGTVPQVIGNEC- 719
            +F     LQVLDLS   +  +I       L     L  L L  N  + ++     +   
Sbjct: 46  YSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH---LSTLILTGNP-IQSLALGAFSGLS 100

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL-----NGSFPFWLETLPQLRVLVL 774
           SL+ L   + +LA      +    +L+ L+V  N +        F      L  L  L L
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF----SNLTNLEHLDL 156

Query: 775 QSNN 778
            SN 
Sbjct: 157 SSNK 160

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 53/245 (21%), Positives = 86/245 (35%), Gaps = 56/245 (22%)

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQ 775
           S + LDLS N L      S      L+VLD+ + ++    +G++    ++L  L  L+L 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILT 84

Query: 776 SNNYDGSIKDTQTANAFA---LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
            N     I+      AF+    LQ +     N + +L          +K           
Sbjct: 85  GNP----IQSLA-LGAFSGLSSLQKLVAVETNLA-SLENFPIG---HLKTLK-------- 127

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKI---LTIFTSIDVSNNQFEGEIPEMLGDFD 889
                L +++          N   S +L +    LT    +D+S+N+ +  I     D  
Sbjct: 128 ----ELNVAH----------NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC--TDLR 170

Query: 890 AL-------LVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVL 942
            L       L L++S N      P     ++ L  L L  NQL          L  L  +
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKI 229

Query: 943 KLSQN 947
            L  N
Sbjct: 230 WLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 37/257 (14%), Positives = 90/257 (35%), Gaps = 57/257 (22%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           S + +   +  L+ +   +   +  ++ + +S +     +    F +L ++  +E+    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 514 FSFNVSGSNSNMF---PKIGTLKLSSCKITEFPN--FLRNQTNLFHLDLSNNRIKGEIPN 568
              N++  + +     P +  L + +  +  FP+   + +    F L++++N     IP 
Sbjct: 92  ---NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 569 WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLD 628
             +     + + L L +N   +                 +      G+       +  + 
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTS-----------------VQGYAFNGT------KLDAVY 185

Query: 629 YSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIP 688
            ++NK+ T I  +         F  + S                  +LD+S   +T ++P
Sbjct: 186 LNKNKYLTVIDKD--------AFGGVYSG---------------PSLLDVSQTSVT-ALP 221

Query: 689 SCLVSSNILKVLKLRNN 705
           S  +    LK L  RN 
Sbjct: 222 SKGLEH--LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 8/191 (4%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQN---ASSLSLREMDFS 461
           S Q L L    L+ I   +     +I  + +  +     L++ ++    +   +  ++  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID---VTLQQLESHSFYNLSKVTHIEIR 88

Query: 462 QNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVS- 519
             +    +     + +  L  L + +     F  L           LE+++N +  ++  
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 520 GSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
            +   +  +  TLKL +   T    +  N T L  + L+ N+    I    +        
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 580 HLNLSHNMLEA 590
            L++S   + A
Sbjct: 209 LLDVSQTSVTA 219

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 37/207 (17%), Positives = 82/207 (39%), Gaps = 15/207 (7%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
              L L    L +      +N  ++  +++S+     ++    F  +  +  +++ +  N
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 297 LTGSLPE--FPPSSQLKVIELSETRFSGKLPD--SINNLALLEDLELSDCNFFGSIPS-S 351
           LT  +          LK + +  T      PD   + +  +   LE++D  +  SIP  +
Sbjct: 93  LT-YIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 352 FGNLT-ELINIDFSRNNFSGSLPSFA-SSNKVISLKFAHNSFTGTIPLSYGDQLIS-LQV 408
           F  L  E + +    N F+ S+  +A +  K+ ++    N +   I       + S   +
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 409 LDLRNNSLQGIIPKSLYTKQSIESLLL 435
           LD+   S+  +  K L   + ++ L+ 
Sbjct: 210 LDVSQTSVTALPSKGL---EHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 31/208 (14%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLSASG 167
            Q L L +  L + P    F  L +++ + +S       +      +L  +  +++  + 
Sbjct: 33  TQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 168 LVAPIQLRRANLEKLVKNLTNLEELYL---------GGIDISGADWGPILSILSNLRILS 218
            +  I          +K L  L+ L +             +   D   IL I  N  + S
Sbjct: 92  NLTYID------PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145

Query: 219 LPDCHVAGPIHSSLSKLQ-LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
           +P         ++   L      L L  N  +S V  +  N + L  ++L+       + 
Sbjct: 146 IPV--------NAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 278 EKIF--LMPSLCFLDVSSNSNLTGSLPE 303
           +  F  +      LDVS   ++T +LP 
Sbjct: 197 KDAFGGVYSGPSLLDVSQT-SVT-ALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 25/224 (11%)

Query: 606 LDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPL 665
             +    +Q   P  P S   L   E    T IP +  + +       ++ +     +  
Sbjct: 16  FRVTCKDIQ-RIPSLPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLES 73

Query: 666 SLCNAFD----LQVLDLSDNHLTGSIPSCLVSSNI-LKVLKLRNNEFLGTVPQV--IGNE 718
              ++F     +  +++ +      I    +     LK L + N   L   P +  + + 
Sbjct: 74  ---HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYST 129

Query: 719 CSLRTLDLSQNHLAGSLPKSL--SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVL 772
                L+++ N    S+P +     C     L +  N        +F        +L  +
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-----NGTKLDAV 184

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQS 816
            L  N Y   I        ++   ++D+S  + +  LP++  + 
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 41/288 (14%), Positives = 83/288 (28%), Gaps = 71/288 (24%)

Query: 666 SLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLD 725
             C     +   ++   +   IPS   S    + LKL              N  ++  + 
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 726 LSQNHLAGSLP-KSLSKCTSLEVLDVGKNQL-----NGSFPFWLETLPQLRVLVLQSNNY 779
           +S +     L   S    + +  +++   +        +     + LP L+ L + +   
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL----KELPLLKFLGIFNTGL 117

Query: 780 DGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLE 839
                D     +  +  I++I+ N +  ++P   FQ                        
Sbjct: 118 -KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ------------------------ 152

Query: 840 LSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFD--ALLVLNMS 897
                          GL  E         ++ + NN F   +      F+   L  + ++
Sbjct: 153 ---------------GLCNETL-------TLKLYNNGFT-SVQG--YAFNGTKLDAVYLN 187

Query: 898 NNNFKGQIPATL--GNLKELGSLDLSHNQLS---GKIPEKLATLNFLS 940
            N +   I      G       LD+S   ++    K  E L  L   +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 39/242 (16%), Positives = 79/242 (32%), Gaps = 40/242 (16%)

Query: 133 SLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEEL 192
           S   L L  +          S+L  +  + +S    +  ++           NL+ +  +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE------SHSFYNLSKVTHI 85

Query: 193 YLGG-IDISGADWGPILSILSNLRILSLPDCHVAG-PIHSSLSKLQLLTHLNLDGNDLSS 250
            +    +++  D    L  L  L+ L + +  +   P  + +    +   L +  N   +
Sbjct: 86  EIRNTRNLTYIDPD-ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 251 EVPD--FLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSS 308
            +P   F    +    L L   G    V    F    L  + ++ N  LT          
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLT---------- 193

Query: 309 QLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSRNN 367
                 + +  F G         +    L++S      ++PS    +L ELI    +RN 
Sbjct: 194 -----VIDKDAFGG-------VYSGPSLLDVSQ-TSVTALPSKGLEHLKELI----ARNT 236

Query: 368 FS 369
           ++
Sbjct: 237 WT 238

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.3 bits (159), Expect = 6e-11
 Identities = 61/489 (12%), Positives = 143/489 (29%), Gaps = 55/489 (11%)

Query: 100 SSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLV 159
               F +      ++     Y++       R  +L  L L     +    L   +    V
Sbjct: 41  CRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV 100

Query: 160 SLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPI-LSILSNLRILS 218
           +  ++                 +  NL  L+ ++   + +S  D   +  +   +L  L 
Sbjct: 101 TPWVTE----------------ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 219 LPDCHVAGP--IHSSLSKLQLLTHLNLDGNDLSSEVPDFL----TNFSSLQYLHLSLCGL 272
           L  C       + S ++  + +  L ++ +  S +   +L     + +SL+ L+  +   
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204

Query: 273 YGRVPEKIFL----MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSI 328
               P+ +        SL  + V     L      F  ++ L+            +P+  
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKY 263

Query: 329 NNLALLEDLELSDCNFFG--SIPSSFGNLTELINIDFSRNNFS--GSLPSFASSNKVISL 384
            NL     L     ++ G   +P  F    ++  +D                    +  L
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323

Query: 385 KFAHNSFTGTIPLSYGDQLISLQVLDLRN--NSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
           +   N                L+ L +    +       + L +++ + +L  G  +   
Sbjct: 324 ET-RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE--- 379

Query: 443 QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSS-NKFSGFITLEMFKDL 501
            LE       +++   D +   L+ +    +  +    ++ L    + +        + L
Sbjct: 380 -LE------YMAVYVSDITNESLESIG-TYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431

Query: 502 ----RQLGTLELSENNFSFNVSG--SNSNMFPKIGTLKLSSCKITE--FPNFLRNQTNLF 553
               ++L               G        P +  + L     ++     F R   NL 
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ 491

Query: 554 HLDLSNNRI 562
            L++     
Sbjct: 492 KLEMRGCCF 500

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.0 bits (145), Expect = 3e-09
 Identities = 76/469 (16%), Positives = 135/469 (28%), Gaps = 45/469 (9%)

Query: 106 LQRLQHLNLADNSLYSSPFPS-GFDRLFSLTHLNLSY-SGFSGHIPLEISS-LKMLVSLD 162
           L++L+ ++     +           R   L  L L   SGF+    L I +  + + +L 
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 163 LSASGLVAPIQLRRANLEKLVKNLTNLEELYL---GGIDISGADWGPILSILSNLRILSL 219
           +  S      +     L +L ++ T+LE L         IS  D   I     +L  + +
Sbjct: 171 MEESSF---SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227

Query: 220 PDCHVAGP--IHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
            D  +        + + L+     +L+ +    E    L     L  L LS  G    +P
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MP 286

Query: 278 EKIFLMPSLCFLDVSSNSNLT-GSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
                   +  LD+      T            L+V+E         L         L+ 
Sbjct: 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346

Query: 337 LELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVI-SLKFAHNSFTGTI 395
           L +        +    G +++              L + A   + +  +    +  T   
Sbjct: 347 LRIERGADEQGMEDEEGLVSQR------------GLIALAQGCQELEYMAVYVSDITNES 394

Query: 396 PLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSL 455
             S G  L +L    L     +  I   L     + SLL                  L  
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERI-TDLPLDNGVRSLL-------------IGCKKLRR 440

Query: 456 REMDFSQNKLQGLVPESIFQI-KGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNF 514
                 Q  L  L    I Q    +  + L     S    +E  +    L  LE+    F
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500

Query: 515 SFNVSGSNSNMFPKIGTLKLSSCKIT----EFPNFLRNQTNLFHLDLSN 559
           S     +     P +  L +   + +    +     R   N+  +    
Sbjct: 501 SERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 71/521 (13%), Positives = 156/521 (29%), Gaps = 51/521 (9%)

Query: 260 SSLQYLHLSLCGLYGRVPEKIF-LMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSET 318
            S    H+++   Y   P+++    P+L  L +        ++    P +    +    T
Sbjct: 48  DSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRA--AMFNLIPENWGGYVTPWVT 105

Query: 319 RFSGKLPDSINNLALLEDLELSDCNF----FGSIPSSFG-NLTELINIDFSRNNFSGSLP 373
             S  L         L+ +              +  +   +L  L  +D      +  L 
Sbjct: 106 EISNNLRQ-------LKSVHFRRMIVSDLDLDRLAKARADDLETL-KLDKCSGFTTDGLL 157

Query: 374 SFASSNK---VISLKFAHNSFTGTIPLSY-GDQLISLQVLDLRNNSLQGIIPKSLYT--- 426
           S  +  +    + ++ +  S      L        SL+VL+        I PK L T   
Sbjct: 158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 427 -KQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQNKLQGLVPESIFQIKGLNVLRL 484
             +S+ S+ +G  +    +  F+ A++L        +++        ++   + L  L L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 485 SSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITE--F 542
           S    +    L  F    Q+  L+L           +     P +  L+  +  I +   
Sbjct: 278 SYMGPNEMPIL--FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGL 334

Query: 543 PNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTV 602
               +    L  L +     +  + +    V    L+ L      LE       ++T+  
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394

Query: 603 LAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSG- 661
           L  +  +   L             +     +  T++P + G          L        
Sbjct: 395 LESIGTYLKNLC--------DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446

Query: 662 -------GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-LKVLKLRNNEFLGTVPQ 713
                  G+      + +++ + L     +             L+ L++R   F      
Sbjct: 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506

Query: 714 VIGNEC-SLRTLDLSQNHLAGSLPKSLSK---CTSLEVLDV 750
               +  SLR L +     + +    +       ++E++  
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 16/153 (10%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           VP+S+       +L LS N  S          L  L +L LS N+ +F  S +   + P 
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV-PN 89

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLSH 585
           +  L LSS  +         +   L  L L NN I   +     N  +   +L  L LS 
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDR---NAFEDMAQLQKLYLSQ 145

Query: 586 NMLEAFE----KPGPNLTSTVLAVLDLHSNMLQ 614
           N +  F     K G  L    L +LDL SN L+
Sbjct: 146 NQISRFPVELIKDGNKLPK--LMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 30/186 (16%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNK 464
              +LDL +N+L  +  +                               +L  +  S N 
Sbjct: 40  YTALLDLSHNNLSRLRAEWT---------------PTRLT---------NLHSLLLSHNH 75

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSN 524
           L  +  E+   +  L  L LSSN     +   +F DL+ L  L L  N+       +  +
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 525 MFPKIGTLKLSSCKITEFPN----FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
           M  ++  L LS  +I+ FP            L  LDLS+N++K         +       
Sbjct: 135 M-AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 581 LNLSHN 586
           L L +N
Sbjct: 194 LYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLSASG 167
              L+L+ N+L          RL +L  L LS++  +  I  E    +  L  LDLS++ 
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN- 98

Query: 168 LVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCH--- 223
                 L    L++ +  +L  LE L L    I   D       ++ L+ L L       
Sbjct: 99  -----HLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISR 150

Query: 224 VAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSL 269
               +    +KL  L  L+L  N L       L    +     L L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 636 TNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFD----LQVLDLSDNHLTGSIPSCL 691
            N+P ++ +Y        L+ NNLS    L           L  L LS NHL   I S  
Sbjct: 31  PNVPQSLPSYTAL---LDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLN-FISSEA 83

Query: 692 VSS-NILKVLKLRNNEFLGTVP-QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD 749
                 L+ L L +N  L T+   +  +  +L  L L  NH+      +      L+ L 
Sbjct: 84  FVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142

Query: 750 VGKNQL----NGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNF 805
           + +NQ+              LP+L +L L SN                +   + + +N  
Sbjct: 143 LSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

Query: 806 SGNLPARWFQSW 817
             +       S 
Sbjct: 202 ECDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNL 243
             LTNL  L L    ++          + NLR L L   H+        S LQ L  L L
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119

Query: 244 DGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL----MPSLCFLDVSSNSNLTG 299
             N +     +   + + LQ L+LS   +  R P ++      +P L  LD+SSN     
Sbjct: 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 300 SLPEFPPSSQLKVIELS 316
            L +           L 
Sbjct: 179 PLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 22/187 (11%)

Query: 341 DCNFFG--SIPSSFGNLTELINIDFSRNNFSGSLPS---FASSNKVISLKFAHNSFTGTI 395
            C+     ++P S  + T    +D S NN S  L +         + SL  +HN     I
Sbjct: 24  SCSKQQLPNVPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FI 79

Query: 396 PLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK--FQNASSL 453
                  + +L+ LDL +N L  +        Q++E LLL  N     +++  F++ +  
Sbjct: 80  SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMA-- 136

Query: 454 SLREMDFSQNKLQGLVPESIFQ----IKGLNVLRLSSNKFSGFITLEMFKDLRQLG--TL 507
            L+++  SQN++    P  + +    +  L +L LSSNK    + L   + L       L
Sbjct: 137 QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194

Query: 508 ELSENNF 514
            L  N  
Sbjct: 195 YLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 864 LTIFTSIDVSNNQFEGEIPEMLGDFD---ALLVLNMSNNNFKGQIPA-TLGNLKELGSLD 919
           +     +D+S+N     + E    F    AL VL + NN+    +      ++ +L  L 
Sbjct: 87  VPNLRYLDLSSNHLH-TLDE--FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLY 142

Query: 920 LSHNQLSGKIPEK----LATLNFLSVLKLSQNLL 949
           LS NQ+S + P +       L  L +L LS N L
Sbjct: 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 49/256 (19%), Positives = 93/256 (36%), Gaps = 21/256 (8%)

Query: 45  RGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLF 104
             L+ D     T  L   +   D            +  VI      SF+   +   +  F
Sbjct: 40  YRLASDESLWQTLDLTGKNLHPDVTGRL------LSQGVIAFRCPRSFMDQPL---AEHF 90

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
              R+QH++L+++ +  S       +   L +L+L     S  I   ++    LV L+LS
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGG-IDISGADWGPILS-ILSNLRILSLPDC 222
                         L+ L+ + + L+EL L    D +       ++ +   +  L+L   
Sbjct: 151 GC-----SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

Query: 223 HVA---GPIHSSLSKLQLLTHLNLDG-NDLSSEVPDFLTNFSSLQYLHLSLC-GLYGRVP 277
                   + + + +   L HL+L     L ++        + LQ+L LS C  +     
Sbjct: 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265

Query: 278 EKIFLMPSLCFLDVSS 293
            ++  +P+L  L V  
Sbjct: 266 LELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 34/191 (17%)

Query: 186 LTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDG 245
              ++ + L    I  +    ILS  S L+ LSL    ++ PI ++L+K   L  LNL G
Sbjct: 92  PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 246 -NDLSSE-VPDFLTNFSSLQYLHLSLC------GLYGRVPEK------------------ 279
            +  S   +   L++ S L  L+LS C       +   V                     
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 280 ------IFLMPSLCFLDVSSNSNLT-GSLPEFPPSSQLKVIELSE-TRFSGKLPDSINNL 331
                 +   P+L  LD+S +  L      EF   + L+ + LS       +    +  +
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 332 ALLEDLELSDC 342
             L+ L++   
Sbjct: 272 PTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 35/214 (16%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY-SGF 144
           +D+S+S I         L    +LQ+L+L    L      +   +  +L  LNLS  SGF
Sbjct: 98  MDLSNSVIEVS-TLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF 155

Query: 145 SGHIPLEI-SSLKMLVSLDLS------ASGLVAPI-----QLRR------------ANLE 180
           S      + SS   L  L+LS         +   +      + +            ++L 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 181 KLVKNLTNLEELYLGG-IDISGADWGPILSILSNLRILSLPDCHV---AGPIHSSLSKLQ 236
            LV+   NL  L L   + +    +      L+ L+ LSL  C+       +   L ++ 
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLE--LGEIP 272

Query: 237 LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
            L  L + G      +         LQ ++ S  
Sbjct: 273 TLKTLQVFGIVPDGTLQLLKEALPHLQ-INCSHF 305

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 46/204 (22%), Positives = 69/204 (33%), Gaps = 34/204 (16%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNL 297
            T L+L  N L +     L  ++ L  L+L                              
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLD--------------------------RAE 66

Query: 298 TGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSS-FGNLT 356
              L        L  ++LS  +    LP     L  L  L++S  N   S+P      L 
Sbjct: 67  LTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLG 124

Query: 357 ELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNN 414
           EL  +    N    +LP      + K+  L  A+N+ T  +P    + L +L  L L+ N
Sbjct: 125 ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQEN 182

Query: 415 SLQGIIPKSLYTKQSIESLLLGQN 438
           SL   IPK  +    +    L  N
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 12/184 (6%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQN 463
              +L L  N L      +L     +  L L +     +L K Q   +L  L  +D S N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHN 87

Query: 464 KLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNS 523
           +LQ L P     +  L VL +S N+ +  + L   + L +L  L L  N       G  +
Sbjct: 88  QLQSL-PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 524 NMFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLN 582
              PK+  L L++  +TE P   L    NL  L L  N +   IP   +  G   L    
Sbjct: 146 PT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF--GSHLLPFAF 201

Query: 583 LSHN 586
           L  N
Sbjct: 202 LHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 48/197 (24%), Positives = 69/197 (35%), Gaps = 40/197 (20%)

Query: 100 SSSLFD-LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKML 158
           S +      RL  LNL    L           L  L  L+LS++     +PL   +L  L
Sbjct: 47  SLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102

Query: 159 VSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRIL 217
             LD+S + L         +L     + L  L+ELYL G                N  + 
Sbjct: 103 TVLDVSFNRL--------TSLPLGALRGLGELQELYLKG----------------N-ELK 137

Query: 218 SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVP 277
           +LP           L+    L  L+L  N+L+      L    +L  L L    LY  +P
Sbjct: 138 TLPP--------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188

Query: 278 EKIFLMPSLCFLDVSSN 294
           +  F    L F  +  N
Sbjct: 189 KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 53/256 (20%), Positives = 79/256 (30%), Gaps = 65/256 (25%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
           S  E++  +  L   +P  +   K   +L LS N      +L       +L  L L    
Sbjct: 11  SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAE 66

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV 573
            +           P +GTL LS  ++   P   +    L  LD+S NR+   +P      
Sbjct: 67  LT---KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPL---GA 119

Query: 574 GDG--KLVHLNLSHNMLEAFEKPG--PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDY 629
             G  +L  L L  N L+    PG         L  L L +N L     +P         
Sbjct: 120 LRGLGELQELYLKGNELKTLP-PGLLTPTPK--LEKLSLANNNLTE---LPA-------- 165

Query: 630 SENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPS 689
                               +   L +                L  L L +N L  +IP 
Sbjct: 166 -------------------GLLNGLEN----------------LDTLLLQENSLY-TIPK 189

Query: 690 CLVSSNILKVLKLRNN 705
               S++L    L  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 40/190 (21%), Positives = 58/190 (30%), Gaps = 40/190 (21%)

Query: 595 GPNLTSTVLAVLDLHSNMLQGSFPIP-PASIIFLDYSENKFTTNIPYNIGNYINYAVFFS 653
                      ++     L  + P   P     L  SEN   T          + A    
Sbjct: 4   CEVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYT---------FSLATLMP 53

Query: 654 LASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ 713
                              L  L+L    LT  +         L  L L +N+ L ++P 
Sbjct: 54  YTR----------------LTQLNLDRAELT-KLQVDGTLPV-LGTLDLSHNQ-LQSLPL 94

Query: 714 VIGNECSLRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQ 768
           +     +L  LD+S N L  SLP         L+ L +  N+L     G         P+
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLL----TPTPK 149

Query: 769 LRVLVLQSNN 778
           L  L L +NN
Sbjct: 150 LEKLSLANNN 159

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 55/242 (22%)

Query: 717 NECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQS 776
              S   ++  + +L  +LP  L       +L + +N L       L    +L  L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 777 NNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFV 836
                 +   Q      +L  +D+S N    +LP       + +   T            
Sbjct: 65  A----ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPL----LGQTLPALT------------ 103

Query: 837 YLELSNLYYQDSVTLMNKGLSMELAKI-------LTIFTSIDVSNNQFEGEIPEMLGDFD 889
            L++S           N+     L  +       L     + +  N+ +  +P   G   
Sbjct: 104 VLDVSF----------NR-----LTSLPLGALRGLGELQELYLKGNELK-TLPP--GLLT 145

Query: 890 ---ALLVLNMSNNNFKGQIPA-TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLS 945
               L  L+++NNN   ++PA  L  L+ L +L L  N L   IP+     + L    L 
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLH 203

Query: 946 QN 947
            N
Sbjct: 204 GN 205

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 56/315 (17%), Positives = 92/315 (29%), Gaps = 87/315 (27%)

Query: 545 FLRNQTNLFHLDLSNNRIKGE----------IPNWTWNVGDGKLVHLNLSHNML------ 588
           F      +  LDLS N +                 +       +  LNLS N L      
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPAS-------VTSLNLSGNSLGFKNSD 69

Query: 589 ---EAFEKPGPNLTSTVLAVLDLHSNMLQ--------GSFPIPPASIIFLDYSENKFTTN 637
              +       N+TS     L+L  N L          +    P +I  LD   N F++ 
Sbjct: 70  ELVQILAAIPANVTS-----LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124

Query: 638 IPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTG----SIPSCLVS 693
                          + ++   S            +  L+L  N L       +   L +
Sbjct: 125 SSSEFKQ--------AFSNLPAS------------ITSLNLRGNDLGIKSSDELIQILAA 164

Query: 694 SNI-LKVLKLRNNEF-------LGTVPQVIGNECSLRTLDLSQNHL----AGSLPKSLSK 741
               +  L LR N         L     +     S+ +LDLS N L       L    S 
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKF--LASIPASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 742 C-TSLEVLDVGKNQLNGS----FPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL-- 794
               +  L++  N L+G          ++L  L+ + L  +      K+   A   A   
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 795 ---LQIIDISSNNFS 806
              + ++D +     
Sbjct: 283 IQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 54/334 (16%), Positives = 90/334 (26%), Gaps = 89/334 (26%)

Query: 477 KGLNVLRLSSNKFS--GFITL-EMFKDLR-QLGTLELSENNFSFNVSGSNSNMFPKIGT- 531
            G+  L LS N       + L + F +    + +L LS N+  F  S     +   I   
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 532 ---LKLSSCKITE------FPNFLRNQTNLFHLDLSNNRIKGE----------IPNWTWN 572
              L LS   ++                 +  LDL  N    +              +  
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS-- 139

Query: 573 VGDGKLVHLNLSHNML---------EAFEKPGPNLTSTVLAVLDLHSNMLQ--------G 615
                +  LNL  N L         +       N+ S     L+L  N L          
Sbjct: 140 -----ITSLNLRGNDLGIKSSDELIQILAAIPANVNS-----LNLRGNNLASKNCAELAK 189

Query: 616 SFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQV 675
                PAS+  LD S N         +G      + +  +S                +  
Sbjct: 190 FLASIPASVTSLDLSAN--------LLGLKSYAELAYIFSSIPNH------------VVS 229

Query: 676 LDLSDNHLTGS----IPSCLVSSNILKVLKLRNNEF-------LGTVPQVIGNECSLRTL 724
           L+L  N L G     +     S   L+ + L  +            +     N   +  +
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289

Query: 725 DLSQNHLAGSLPKSLSK-----CTSLEVLDVGKN 753
           D +   +  S    +S          +V  +   
Sbjct: 290 DKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 45/329 (13%), Positives = 105/329 (31%), Gaps = 79/329 (24%)

Query: 673 LQVLDLSDNHLTGS----IPSCLVSSNI-LKVLKLRNNEFLGTVPQVIG-----NECSLR 722
           +  LDLS N+L       +     ++   +  L L  N         +         ++ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 723 TLDLSQNHL----AGSLPKSLSKC-TSLEVLDVGKNQLNGSFPFWL-----ETLPQLRVL 772
           +L+LS N L    +  L K+L+    ++ VLD+G N  +                 +  L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 773 VLQSNNYDGSIKDTQTANAFAL--------LQIIDISSNNFSGNLPARWFQSWRGMKKRT 824
            L+ N+    +   ++++            +  +++  NN +           +      
Sbjct: 144 NLRGND----LGI-KSSDELIQILAAIPANVNSLNLRGNNLAS----------KNCA--- 185

Query: 825 KESQESQILKFVYLELSNLYYQDSVTLMN--------KGLSMELAKILTIFTSIDVSNNQ 876
              + ++ L  +   +++L       L            L+   + I     S+++  N 
Sbjct: 186 ---ELAKFLASIPASVTSLD------LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236

Query: 877 FEGE----IPEMLGDFDALLVLNMSNNNFKGQ-------IPATLGNLKELGSLDLSHNQL 925
             G     +  +      L  + +  +  K         + A   N++++  +D +  ++
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 926 SG----KIPEKLATLNF-LSVLKLSQNLL 949
                  I   +  L+    V  L    L
Sbjct: 297 HPSHSIPISNLIRELSGKADVPSLLNQCL 325

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 51/277 (18%), Positives = 90/277 (32%), Gaps = 33/277 (11%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           IN       L      NL   S+           L  + + N   S     +   +    
Sbjct: 9   INQVFPDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFT 63

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGG---IDISGADWGPILSILSN 213
            L  L LS + +         +L  L K+LT LEEL +      +++G          + 
Sbjct: 64  NLKELHLSHNQIS--------DLSPL-KDLTKLEELSVNRNRLKNLNGIP-------SAC 107

Query: 214 LRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLY 273
           L  L L +  +      SL  L+ L  L++  N L S     L   S L+ L L    + 
Sbjct: 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI- 162

Query: 274 GRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLAL 333
                 +  +  + ++D++    +   +   P       ++  + R+    P  I+N   
Sbjct: 163 -TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGS 219

Query: 334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
             D  +                +E IN+  +   F G
Sbjct: 220 YVDGCVLW-ELPVYTDEVSYKFSEYINVGETEAIFDG 255

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 45/250 (18%), Positives = 84/250 (33%), Gaps = 45/250 (18%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDF 460
             L +    +L   S+  ++ +   +                            ++  + 
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQKELSG---------------------------VQNFNG 48

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
             + +Q L    +     L  L LS N+ S    L   KDL +L  L ++ N    N++G
Sbjct: 49  DNSNIQSL--AGMQFFTNLKELHLSHNQIS---DLSPLKDLTKLEELSVNRNRLK-NLNG 102

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
             S     +  L L + ++ +  + L +  NL  L + NN++K  I    +     KL  
Sbjct: 103 IPS---ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLK-SIVMLGFLS---KLEV 154

Query: 581 LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNI-P 639
           L+L  N +         L    +  +DL               +   +  ++     I P
Sbjct: 155 LDLHGNEITNTG-GLTRLKK--VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISP 211

Query: 640 YNIGNYINYA 649
           Y I N  +Y 
Sbjct: 212 YYISNGGSYV 221

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 22/183 (12%)

Query: 96  GINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSL 155
            +    S  +L  +Q+ N  ++++ S    +G     +L  L+LS++  S   PL    L
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQISDLSPL--KDL 84

Query: 156 KMLVSLDLSASGLVAPIQLRRANLEKL------------VKNLTNLEELYLGGIDISGAD 203
             L  L ++ + L     +  A L +L            + +L NLE L +    +    
Sbjct: 85  TKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV 144

Query: 204 WGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQ 263
              +L  LS L +L L    +       L++L+ +  ++L G    +E   +        
Sbjct: 145 ---MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITN 199

Query: 264 YLH 266
            + 
Sbjct: 200 TVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 40/272 (14%), Positives = 82/272 (30%), Gaps = 45/272 (16%)

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
               +  + P+            L     +  ++ +    ++         +N     S 
Sbjct: 5   RPTPINQVFPDPGL--ANAVKQNLGKQSVTDLVSQKELSGVQ---NFNGDNSNIQ---SL 56

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
           +    F  +  L LS  +I++    L++ T L  L ++ NR+K  +      +    L  
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLN----GIPSACLSR 110

Query: 581 LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPY 640
           L L +N L   +    +L +  L +L + +N L                       +I  
Sbjct: 111 LFLDNNELRDTD-SLIHLKN--LEILSIRNNKL----------------------KSIV- 144

Query: 641 NIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVL 700
            +G      V   L  N ++    L+      +  +DL+                I   +
Sbjct: 145 MLGFLSKLEV-LDLHGNEITNTGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 701 KLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA 732
           K  +  ++   P  I N  S     +      
Sbjct: 202 KDPDGRWI--SPYYISNGGSYVDGCVLWELPV 231

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 43/288 (14%), Positives = 85/288 (29%), Gaps = 78/288 (27%)

Query: 526 FPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH 585
                   L    +T+  +  +  + + + +  N+ I+  +    +      L  L+LSH
Sbjct: 18  LANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQ-SLAGMQFFT---NLKELHLSH 72

Query: 586 NMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNY 645
           N +     P  +LT   L  L ++ N L+    IP A +  L    N+            
Sbjct: 73  NQISDLS-PLKDLTK--LEELSVNRNRLKNLNGIPSACLSRLFLDNNELR---------- 119

Query: 646 INYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNN 705
                       +        L +  +L++L + +N L  SI                  
Sbjct: 120 ------------DTDS-----LIHLKNLEILSIRNNKLK-SIVM---------------- 145

Query: 706 EFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLET 765
                    +G    L  LDL  N +  +    L++   +  +D+   +       +   
Sbjct: 146 ---------LGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194

Query: 766 LPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARW 813
           L     +     + DG             +    IS+     +    W
Sbjct: 195 LYITNTV----KDPDGRW-----------ISPYYISNGGSYVDGCVLW 227

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 41/231 (17%)

Query: 720 SLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNY 779
           +    +L +  +  +   S  + + ++  +   + +       ++    L+ L L  N  
Sbjct: 20  NAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ- 74

Query: 780 DGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLE 839
              I D         L+ + ++ N                                  L 
Sbjct: 75  ---ISDLSPLKDLTKLEELSVNRNRLK-------------------NLNGIPSACLSRLF 112

Query: 840 LSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNN 899
           L N          N+    +    L     + + NN+ +  I  MLG    L VL++  N
Sbjct: 113 LDN----------NELRDTDSLIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGN 160

Query: 900 NFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLV 950
                    L  LK++  +DL+  +   +  +    L   + +K      +
Sbjct: 161 EITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 40/234 (17%)

Query: 183 VKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLN 242
              L N  +  LG   ++  D       LS ++  +  + ++     + +     L  L+
Sbjct: 15  DPGLANAVKQNLGKQSVT--DLVS-QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELH 69

Query: 243 LDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLP 302
           L  N +S      L + + L+ L ++   L                 +++   +      
Sbjct: 70  LSHNQISD--LSPLKDLTKLEELSVNRNRL----------------KNLNGIPSAC---- 107

Query: 303 EFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINID 362
                  L  + L          DS+ +L  LE L + +           G L++L  +D
Sbjct: 108 -------LSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLD 156

Query: 363 FSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSL 416
              N  + +        KV  +           P+ Y  +L     +   +   
Sbjct: 157 LHGNEIT-NTGGLTRLKKVNWIDLTGQKCV-NEPVKYQPELYITNTVKDPDGRW 208

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 8e-09
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 25/220 (11%)

Query: 401 DQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDF 460
                L   +L       ++   L + + ++ L          +        L +R +D 
Sbjct: 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII-------LLMRALDP 397

Query: 461 SQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITL----EMFKDLRQLGTLELSENNFSF 516
              + + L  +    +K ++ +R +         L     +  +   +  L L+  + + 
Sbjct: 398 LLYEKETL--QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT- 454

Query: 517 NVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIK--GEIPNWTWNVG 574
                +      +  L LS  ++   P  L     L  L  S+N ++    + N      
Sbjct: 455 --VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP---- 508

Query: 575 DGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQ 614
             +L  L L +N L+      P ++   L +L+L  N L 
Sbjct: 509 --RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 5e-08
 Identities = 53/312 (16%), Positives = 99/312 (31%), Gaps = 28/312 (8%)

Query: 41  LEFKRGLSFDPQTDSTNKLLSWSSTTDCCSWDGVTCDPRTGHVIGLDISSSFITGGINGS 100
           L           +     LL          W       R  HV   D+ ++ +   +   
Sbjct: 257 LSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQH 316

Query: 101 SSLF---DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKM 157
           +           +   L  +      +         L    LS    S  +  E+ S K 
Sbjct: 317 TFRVIWTGSDSQKECVLLKDRPEC--WCRDSATDEQLFRCELSVE-KSTVLQSELESCKE 373

Query: 158 LVSLDLSASGLVAPIQLRRANLEKLV---------KNLTNLEELYLGGIDISGADWGPIL 208
           L  L+      +  I L    L+ L+           L  ++ +    +D   + +    
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 209 SIL----SNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
           S+L    +++R+L L    +    H  L +L L+THL+L  N L + +P  L     L+ 
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEV 490

Query: 265 LHLSLCGLYGRVPEKIFLMPSLCFLDVSSN--SNLTGSLPEFPPSSQLKVIELSETRFSG 322
           L  S   L     + +  +P L  L + +N       ++       +L ++ L       
Sbjct: 491 LQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLC- 546

Query: 323 KLPDSINNLALL 334
           +       LA +
Sbjct: 547 QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 1e-07
 Identities = 51/386 (13%), Positives = 100/386 (25%), Gaps = 70/386 (18%)

Query: 425 YTKQSI------ESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKG 478
             + +       +S           L + +    L    +   +  L       +     
Sbjct: 214 LVQNAFFTDPNDQSA---WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270

Query: 479 LNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGT------- 531
           +  L L  ++    +         +   + L +   +        + F  I T       
Sbjct: 271 MGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKE 330

Query: 532 LKLSSCKITEFPNFLRNQTNLFHLDLSNNRI---KGEIPNW---TWNVGDGKLVHLNLSH 585
             L   +   +         LF  +LS  +    + E+ +         + K   L +  
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390

Query: 586 NMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASII--------------FLDYSE 631
            M           T    + L     M         +  +               L  + 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 632 NKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCL 691
              T     ++   +       L+ N L   +P +L     L+VL  SDN L  ++    
Sbjct: 451 KDLTV--LCHLEQLLL-VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-- 503

Query: 692 VSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAG-SLPKSLSKCTSLEVLDV 750
                                  + N   L+ L L  N L   +  + L  C  L +L++
Sbjct: 504 -----------------------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 751 GKNQLNGSFPFW---LETLPQLRVLV 773
             N L           E LP +  ++
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 8e-07
 Identities = 48/354 (13%), Positives = 102/354 (28%), Gaps = 39/354 (11%)

Query: 609 HSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLC 668
           H  +L  + P      + +   E   +      +           +           +  
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 669 NAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL-------GTVPQVIGNECSL 721
                  + L D             +  +      + +             +    +  L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 722 RTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDG 781
              +LS       L   L  C  L+ L+              E    L  ++L     D 
Sbjct: 352 FRCELSVEKST-VLQSELESCKELQELE-------------PENKWCLLTIILLMRALDP 397

Query: 782 SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELS 841
            + + +T   F+ L+ +D     +  +L +++            E  + ++L   + +L+
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN---SVLKMEYADVRVLHLAHKDLT 454

Query: 842 NLYYQDSVTLMN---------KGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
            L + + + L+          + L   LA  L     +  S+N  E  +   + +   L 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALE-NVDG-VANLPRLQ 511

Query: 893 VLNMSNNNFKGQIPA--TLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKL 944
            L + NN  + Q  A   L +   L  L+L  N L  +   +      L  +  
Sbjct: 512 ELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 101 SSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVS 160
             L  L  + HL+L+ N L     P     L  L  L  S +    ++   +++L  L  
Sbjct: 457 CHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512

Query: 161 LDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADW--GPILSILSNLRIL 217
           L L  +      +L+++   + + +   L  L L G  +   +     +  +L ++  +
Sbjct: 513 LLLCNN------RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 238 LTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFL-MPSLCFLDVSSNSN 296
              L+L  N LSS         + L+ L+L+   L   +P  IF  + +L  L V+ N  
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK- 96

Query: 297 LTGSLPE--FPPSSQLKVIELSETRFSGKLPDSI-NNLALLEDLELSDCNFFGSIPS-SF 352
           L  +LP   F     L  + L   +    LP  + ++L  L  L L   N   S+P   F
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGY-NELQSLPKGVF 153

Query: 353 GNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLD 410
             LT L  +    N     +P   F    ++ +LK  +N     +P    D L  L++L 
Sbjct: 154 DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211

Query: 411 LRNN 414
           L+ N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 100 SSSLFD-LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKM 157
            S  F  L +L+ L L DN L + P    F  L +L  L ++ +     +P+ +   L  
Sbjct: 53  PSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVN 110

Query: 158 LVSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
           L  L L  + L         +L   V  +LT L  L LG  ++     G +   L++L+ 
Sbjct: 111 LAELRLDRNQL--------KSLPPRVFDSLTKLTYLSLGYNELQSLPKG-VFDKLTSLKE 161

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
           L L +  +      +  KL  L  L LD N L         +   L+ L L 
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 45/215 (20%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNK 464
             + LDL++N L  +                    FH  L K        LR +  + NK
Sbjct: 38  DTKKLDLQSNKLSSLPS----------------KAFHR-LTK--------LRLLYLNDNK 72

Query: 465 LQGLVPESIF-QIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNS 523
           LQ L P  IF ++K L  L ++ NK    + + +F  L  L  L L  N           
Sbjct: 73  LQTL-PAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130

Query: 524 NMFPKIGTLKLSSCKITEFPN--FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHL 581
           ++  K+  L L   ++   P   F    T+L  L L NN++K  +P   ++    +L  L
Sbjct: 131 SL-TKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLK-RVPEGAFD-KLTELKTL 186

Query: 582 NLSHNMLE-----AFEKPGPNLTSTVLAVLDLHSN 611
            L +N L+     AF+    +L    L +L L  N
Sbjct: 187 KLDNNQLKRVPEGAFD----SLEK--LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 34/184 (18%)

Query: 334 LEDLELSDCNFFGSIPSS-FGNLTELINIDFSRNNFSGSLPS--FASSNKVISLKFAHNS 390
            + L+L   N   S+PS  F  LT+L  +  + N    +LP+  F     + +L    N 
Sbjct: 39  TKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 391 FTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNA 450
               +P+   DQL++L  L L  N L+  +P  ++   +                     
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLT--------------------- 133

Query: 451 SSLSLREMDFSQNKLQGLVPESIF-QIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLEL 509
               L  +    N+LQ L P+ +F ++  L  LRL +N+    +    F  L +L TL+L
Sbjct: 134 ---KLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKL 188

Query: 510 SENN 513
             N 
Sbjct: 189 DNNQ 192

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 51/189 (26%), Positives = 69/189 (36%), Gaps = 15/189 (7%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLSASG 167
            + L+L  N L S P    F RL  L  L L+ +     +P  I   LK L +L ++ + 
Sbjct: 39  TKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96

Query: 168 LVA-PIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAG 226
           L A P          +   L NL EL L    +       +   L+ L  LSL    +  
Sbjct: 97  LQALP--------IGVFDQLVNLAELRLDRNQLKSLPPR-VFDSLTKLTYLSLGYNELQS 147

Query: 227 PIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIF-LMPS 285
                  KL  L  L L  N L           + L+ L L    L  RVPE  F  +  
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206

Query: 286 LCFLDVSSN 294
           L  L +  N
Sbjct: 207 LKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ-VIGNECS 720
            IP       D + LDL  N L+            L++L L +N+ L T+P  +     +
Sbjct: 34  NIPA------DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN 86

Query: 721 LRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQ 775
           L TL ++ N L  +LP  +  +  +L  L + +NQL       F    ++L +L  L L 
Sbjct: 87  LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLG 141

Query: 776 SN 777
            N
Sbjct: 142 YN 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 57/245 (23%), Positives = 85/245 (34%), Gaps = 68/245 (27%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
           +P +I        L L SNK S  +  + F  L +L  L L++N     +          
Sbjct: 31  IPSNIPA--DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 529 IGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLSH 585
           + TL ++  K+   P        NL  L L  N++K  +P     V D   KL +L+L +
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPP---RVFDSLTKLTYLSLGY 142

Query: 586 NMLE-----AFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPY 640
           N L+      F+K    LTS  L  L L++N L                        +P 
Sbjct: 143 NELQSLPKGVFDK----LTS--LKELRLYNNQL----------------------KRVPE 174

Query: 641 NIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVL 700
                     F  L                  L+ L L +N L         S   LK+L
Sbjct: 175 G--------AFDKLTE----------------LKTLKLDNNQLKRVPEGAFDSLEKLKML 210

Query: 701 KLRNN 705
           +L+ N
Sbjct: 211 QLQEN 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQ 443
           ++   N+    IP         L+ +DL NN +  + P +    +S+ SL+L  N    +
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN----K 91

Query: 444 LEK-----FQNASSLSLREMDFSQNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEM 497
           + +     F+   SL  + +  + NK+  L     FQ +  LN+L L  NK    I    
Sbjct: 92  ITELPKSLFEGLFSL--QLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

Query: 498 FKDLRQLGTLELSENNF 514
           F  LR + T+ L++N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ-VIGNECS 720
            +P        +  + L  N +    P        L+ + L NN+ +  +         S
Sbjct: 29  NLPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRS 81

Query: 721 LRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQ 775
           L +L L  N +   LPKSL     SL++L +  N++      +F    + L  L +L L 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAF----QDLHNLNLLSLY 136

Query: 776 SNN 778
            N 
Sbjct: 137 DNK 139

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 18/134 (13%)

Query: 653 SLASNNLSGGIPLSLCNAFD----LQVLDLSDNHLTGSIPS----CLVSSNILKVLKLRN 704
            L  N +   IP     AF     L+ +DLS+N ++  +       L S   L  L L  
Sbjct: 38  RLEQNTIKV-IPP---GAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS---LNSLVLYG 89

Query: 705 NEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK-SLSKCTSLEVLDVGKNQLNGSFPFWL 763
           N+       +     SL+ L L+ N +   L   +     +L +L +  N+L        
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 764 ETLPQLRVLVLQSN 777
             L  ++ + L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK-----FQNASSLSLREMD 459
           ++  + L  N+++ I P +    + +  + L  N    Q+ +     FQ   SL    + 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN----QISELAPDAFQGLRSL--NSLV 86

Query: 460 FSQNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNV 518
              NK+  L P+S+F+ +  L +L L++NK +  + ++ F+DL  L  L L +N      
Sbjct: 87  LYGNKITEL-PKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIA 144

Query: 519 SGSNSNMFPKIGTLKLS------SCKITEFPNFLR 547
            G+ S +   I T+ L+       C +    ++L 
Sbjct: 145 KGTFSPL-RAIQTMHLAQNPFICDCHLKWLADYLH 178

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 33/158 (20%)

Query: 110 QHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLV 169
             + L  N++   P P  F     L  ++LS +        +IS L              
Sbjct: 35  TEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNN--------QISELA------------- 72

Query: 170 APIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIH 229
                         + L +L  L L G  I+      +   L +L++L L    +     
Sbjct: 73  ----------PDAFQGLRSLNSLVLYGNKITELPKS-LFEGLFSLQLLLLNANKINCLRV 121

Query: 230 SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267
            +   L  L  L+L  N L +      +   ++Q +HL
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 30/143 (20%), Positives = 54/143 (37%), Gaps = 8/143 (5%)

Query: 302 PEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS-SFGNLTELIN 360
              P +     I L +       P + +    L  ++LS+ N    +   +F  L  L +
Sbjct: 28  TNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNS 84

Query: 361 IDFSRNNFSGSLPS--FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQG 418
           +    N  +  LP   F     +  L    N     + +     L +L +L L +N LQ 
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 419 IIPKSLYTKQSIESLLLGQNKFH 441
           I   +    ++I+++ L QN F 
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 1/94 (1%)

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
               +   + L  L + + +    + L   + L +L  L + ++   F    +     P+
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT-PR 81

Query: 529 IGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRI 562
           +  L LS   +           +L  L LS N +
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 3/113 (2%)

Query: 666 SLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP-QVIGNECSLRTL 724
             C       L  + +         L  +  L  L + N + L  +  + +     LR L
Sbjct: 3   DACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 725 DLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSN 777
            + ++ L    P +      L  L++  N L       ++ L  L+ LVL  N
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 24/112 (21%), Positives = 33/112 (29%), Gaps = 25/112 (22%)

Query: 184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNL 243
               NL ELY+                 +   +  L            L  L  L +L +
Sbjct: 28  PGAENLTELYI----------------ENQQHLQHLEL--------RDLRGLGELRNLTI 63

Query: 244 DGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNS 295
             + L    PD       L  L+LS   L   +  K     SL  L +S N 
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 4/103 (3%)

Query: 848 SVTLMNKGLSMELAKI--LTIFTSIDVSNNQFEGEIP-EMLGDFDALLVLNMSNNNFKGQ 904
            +     G    L  +      T + + N Q    +    L     L  L +  +  +  
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 905 IPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
            P        L  L+LS N L   +  K      L  L LS N
Sbjct: 72  APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 880 EIPEMLGDFDALLVLNMSNNNFKGQIPA-TLGNLKELGSLDLSHNQLSGKIPEKLATLNF 938
           +    L   + L  L + N      +    L  L EL +L +  + L    P+       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 939 LSVLKLSQNLL 949
           LS L LS N L
Sbjct: 82  LSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 26/118 (22%)

Query: 325 PDSINNLALLEDLELSDCNFFGSIPS-SFGNLTELINIDFSRNNFSGSLPSFASSNKVIS 383
              +     L +L + +      +       L EL N+   ++     +   A       
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA------- 75

Query: 384 LKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
                  F              L  L+L  N+L+  +        S++ L+L  N  H
Sbjct: 76  -------FHF---------TPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 221 DCHVAGPIHS--SLSKLQLLTHLNLDGNDLSSEVPDF-LTNFSSLQYLHLSLCGLYGRVP 277
            C   G + S   L   + LT L ++       +    L     L+ L +   GL   V 
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVA 72

Query: 278 EKIFL-MPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRF 320
              F   P L  L++S N  L     +      L+ + LS    
Sbjct: 73  PDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 29/129 (22%)

Query: 341 DCNFFG--SIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLS 398
            C   G             L  +          L                    G     
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD--------------LRG----- 54

Query: 399 YGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG-QLEKFQNASSLSLRE 457
               L  L+ L +  + L+ + P + +    +  L L  N       +  Q    LSL+E
Sbjct: 55  ----LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG---LSLQE 107

Query: 458 MDFSQNKLQ 466
           +  S N L 
Sbjct: 108 LVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 540 TEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLE-----AFEKP 594
            +  + L    NL  L + N +    +       G G+L +L +  + L      AF   
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDAFH-- 77

Query: 595 GPNLTSTVLAVLDLHSNMLQ----GSFPIPPASIIFLD 628
                   L+ L+L  N L+     +        + L 
Sbjct: 78  --FTPR--LSRLNLSFNALESLSWKTVQGLSLQELVLS 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 32/158 (20%)

Query: 110 QHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLV 169
             L L +N          F +L  L  +N S +        +I+ ++             
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------KITDIE------------- 73

Query: 170 APIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIH 229
                     E   +  + + E+ L    +       +   L +L+ L L    +    +
Sbjct: 74  ----------EGAFEGASGVNEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCVGN 122

Query: 230 SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267
            S   L  +  L+L  N +++  P       SL  L+L
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTK-QSIESLLLGQNKFHGQLEK--FQNASSLSLREMDFS 461
               L L NN    +    ++ K   +  +    NK    +E+  F+ AS   + E+  +
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS--GVNEILLT 89

Query: 462 QNKLQGLVPESIFQ-IKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSG 520
            N+L+ +    +F+ ++ L  L L SN+ +  +  + F  L  +  L L +N  +    G
Sbjct: 90  SNRLENV-QHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 521 SNSNMFPKIGTLKLS------SCKITEFPNFLR 547
           +   +   + TL L       +C +     +LR
Sbjct: 148 AFDTL-HSLSTLNLLANPFNCNCYLAWLGEWLR 179

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI--LKVLKLRNNEFLGTVPQ-VIGNE 718
            IP           L L++N  T  + +  +   +  L+ +   NN+ +  + +      
Sbjct: 29  HIPQ------YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGA 80

Query: 719 CSLRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLV 773
             +  + L+ N L  ++   +     SL+ L +  N++    N SF      L  +R+L 
Sbjct: 81  SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF----IGLSSVRLLS 135

Query: 774 LQSNN 778
           L  N 
Sbjct: 136 LYDNQ 140

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 19/139 (13%)

Query: 481 VLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT 540
            LRL++N+F+      +FK L QL  +  S N  +    G+       +  + L+S ++ 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEILLTSNRLE 94

Query: 541 EFPN-FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLSHNML-----EAFE 592
              +   +   +L  L L +NRI   + N   +   G   +  L+L  N +      AF+
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGN---DSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 593 KPGPNLTSTVLAVLDLHSN 611
                L S  L+ L+L +N
Sbjct: 151 ----TLHS--LSTLNLLAN 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 10/115 (8%)

Query: 401 DQLISLQVLDLRNNSLQGI--IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLRE 457
              +  + LDLR   +  I  +  +L      +++    N    ++ K      L  L+ 
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATL---DQFDAIDFSDN----EIRKLDGFPLLRRLKT 68

Query: 458 MDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN 512
           +  + N++  +       +  L  L L++N       L+    L+ L  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 10/116 (8%)

Query: 666 SLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNEC--SLRT 723
              NA   + LDL    +   I +   + +    +   +NE    + ++ G      L+T
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE----IRKLDGFPLLRRLKT 68

Query: 724 LDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLN--GSFPFWLETLPQLRVLVLQSN 777
           L ++ N +             L  L +  N L   G     L +L  L  L +  N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
            L L   KI    N          +D S+N I+ ++  +       +L  L +++N +  
Sbjct: 23  ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLR---RLKTLLVNNNRICR 78

Query: 591 -FEKPGPNLTSTVLAVLDLHSNMLQ 614
             E     L    L  L L +N L 
Sbjct: 79  IGEGLDQALPD--LTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 675 VLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGS 734
           ++ L+   +  +  +   ++   + L LR  + +  +  +         +D S N +   
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 735 LPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFAL 794
           L         L+ L V  N++        + LP L  L+L +NN    + D     +   
Sbjct: 57  L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL-TNNSLVELGDLDPLASLKS 114

Query: 795 LQIIDISSN 803
           L  + I  N
Sbjct: 115 LTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 15/138 (10%)

Query: 165 ASGLVAPIQLRRANL--------EKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
           A+     ++ R  +L        E L   L   + +     +I   D      +L  L+ 
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKT 68

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSS-EVPDFLTNFSSLQYLHLS---LCGL 272
           L + +  +          L  LT L L  N L      D L +  SL YL +    +   
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128

Query: 273 YGRVPEKIFLMPSLCFLD 290
                  I+ +P +  LD
Sbjct: 129 KHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 23/113 (20%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 453 LSLREMDFSQNKLQGLVPESIF-QIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE 511
           +  RE+D    K+  +  E++   +   + +  S N+      L+ F  LR+L TL ++ 
Sbjct: 19  VRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNN 73

Query: 512 NNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP--NFLRNQTNLFHLDLSNNRI 562
           N     +        P +  L L++  + E    + L +  +L +L +  N +
Sbjct: 74  NRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 663 IPLSLCNAFDLQVLDLSDNHLTGSIP--SCLVSSNILKVLKLRNNEFLGTVPQVIGNECS 720
           +  +L      + L LS N++   I   S + +   L++L L  N  +  +  +     +
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISSLSGMEN---LRILSLGRNL-IKKIENLDAVADT 94

Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW-LETLPQLRVLVLQSN 777
           L  L +S N +  +    + K  +L VL +  N++        L  L +L  L+L  N
Sbjct: 95  LEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 28/164 (17%), Positives = 49/164 (29%), Gaps = 33/164 (20%)

Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTL 507
             A+     E+      ++ +   ++  +K    L LS+N      +L   ++LR     
Sbjct: 20  VVATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISSLSGMENLR----- 73

Query: 508 ELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIP 567
                                   L L    I +  N       L  L +S N+I   + 
Sbjct: 74  -----------------------ILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLS 109

Query: 568 NWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSN 611
                V    L  L +S+N +  + +         L  L L  N
Sbjct: 110 GIEKLV---NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 178 NLEKLVKNLTNLEELYLGG---IDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSK 234
            ++  +  L   + L L       IS       LS + NLRILSL    +   I +  + 
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISS------LSGMENLRILSLGRNLIKK-IENLDAV 91

Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
              L  L +  N ++S     +    +L+ L++S
Sbjct: 92  ADTLEELWISYNQIAS--LSGIEKLVNLRVLYMS 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLA 732
           L++L L  N +   I +    ++ L+ L +  N+        I    +LR L +S N + 
Sbjct: 72  LRILSLGRNLIK-KIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKIT 128

Query: 733 --GSLPKSLSKCTSLEVLDVGKNQLNGSF----------PFWLETLPQLRVL 772
             G +   L+    LE L +  N L   +             ++ LP L+ L
Sbjct: 129 NWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 652 FSLASNNLS--GGIPLS---LCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-LKVLKLRNN 705
            +LA   ++      ++         L  ++L+   L  +    L+   +  + L L+ N
Sbjct: 77  LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136

Query: 706 EFLGTVPQVIG-----NECSLRTLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQL 755
                  + +      ++C + TL LS N L       L + L+  TS+  L +    L
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 29/160 (18%)

Query: 133 SLTHLNLSYSGFSGHIPLEISSL--------KMLVSLDLSASGLVAPIQLRRANLEKLVK 184
           SL  LNL+    +   P++ + +          L  ++L++       QL  A L  L+ 
Sbjct: 73  SLRQLNLAGVRMT---PVKCTVVAAVLGSGRHALDEVNLASC------QLDPAGLRTLLP 123

Query: 185 NLTNLEELYLGGIDISGADWGPILSIL----SNLRILSLPDCHV----AGPIHSSLSKLQ 236
                 +L L    +       +  +L      +  L L +  +       +   L+   
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 237 LLTHLNLDGNDLSSE----VPDFLTNFSSLQYLHLSLCGL 272
            +THL+L    L  E    +   L     LQ L+++  G 
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 5e-06
 Identities = 101/640 (15%), Positives = 191/640 (29%), Gaps = 168/640 (26%)

Query: 314 ELSETRFSGK--LPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGS 371
           E  E ++  K  L    +  A +++    DC     +P S  +  E+ +I  S++  SG+
Sbjct: 10  ETGEHQYQYKDILSVFED--AFVDNF---DCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 372 ---LPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQ 428
                +  S  + +  KF        + ++Y   L+S     ++    Q  +   +Y +Q
Sbjct: 65  LRLFWTLLSKQEEMVQKF----VEEVLRINY-KFLMS----PIKTEQRQPSMMTRMYIEQ 115

Query: 429 SIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNK 488
                   +++ +   + F   +   L+     +  L  L P     I G+         
Sbjct: 116 --------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--------- 158

Query: 489 FSGF----ITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN 544
             G     + L++    +        +    F +       F     L L +C   E   
Sbjct: 159 -LGSGKTWVALDVCLSYKV-------QCKMDFKI-------F----WLNLKNCNSPE--T 197

Query: 545 FLRNQTNLFHLDLSNNRIKGEIP-NWTWNVGDGK----------------LVHLNLSH-N 586
            L     L +    N   + +   N    +   +                LV LN+ +  
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 587 MLEAFEKPGPNLTSTVL------AVLDLHSNMLQGSFPIPPASIIF-LDYSENKFTTNIP 639
              AF     NL+  +L       V D  S        +   S+    D  ++       
Sbjct: 258 AWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----- 307

Query: 640 YNIGNYINYAVFFSLASNNLSGGIPL--SLCNAFDLQVLDLSDN-------HLTGSIPSC 690
                Y++      L    L+   P   S+        L   DN        LT  I S 
Sbjct: 308 ---LKYLDCRPQ-DLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 691 L-------------------VSSNI-LKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN- 729
           L                    S++I   +L L   + + +   V+ N+    +L   Q  
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 730 -------HLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS 782
                   +   L   L    +L    V    +  +F       P L       + Y  S
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-------DQYFYS 475

Query: 783 -----IKDTQTANAFALLQII-------------DISSNNFSGNLPA-----RWFQSWRG 819
                +K+ +      L +++             D ++ N SG++       ++++ +  
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 820 MKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSME 859
                 E   + IL F+     NL       L+   L  E
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 493 ITLEM-FKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTN 551
           I LE+  +    +  L L  +  +       ++ F ++  L   +  +T   N L     
Sbjct: 7   IHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNK 65

Query: 552 LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSN 611
           L  L+LS+NR+ G +           L HLNLS N ++      P      L  LDL + 
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKC--PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 175 RRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSK 234
           RR +LE   +  ++++EL L     +      +      L  LS  +  +     ++L K
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPK 62

Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYG-RVPEKIFLMPSLCFLDVSS 293
           L  L  L L  N +S  +        +L +L+LS   +      E +  + +L  LD+ +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 294 N 294
            
Sbjct: 123 C 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 669 NAFDLQVLDLSDNHLT-GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLS 727
              D++ L L ++    G +         L+ L   N   L ++   +     L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELS 72

Query: 728 QNHLAGSLPKSLSKCTSLEVLDVGKNQLNG-SFPFWLETLPQLRVLVLQSN 777
            N ++G L     KC +L  L++  N++   S    L+ L  L+ L L + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 405 SLQVLDLRNNSLQGI-IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQ 462
            ++ L L N+      +       + +E L          L    N   L  L++++ S 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSD 73

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN 512
           N++ G +     +   L  L LS NK     T+E  K L  L +L+L   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           +L+ L   +  LT SI + L   N LK L+L +N   G +  +     +L  L+LS N +
Sbjct: 43  ELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 732 AG-SLPKSLSKCTSLEVLDVGKN---QLNGSFPFWLETLPQLRVL 772
              S  + L K  +L+ LD+       LN       + LPQL  L
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 868 TSIDVSNNQF-EGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLS 926
             + + N++  EG++  +  +F+ L  L+  N      I A L  L +L  L+LS N++S
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVS 77

Query: 927 GKIPEKLATLNFLSVLKLSQNLL 949
           G +         L+ L LS N +
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
           + + L+ L+  +  L S    +   +L  L  L LS +  SG + +       L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGG 196
            + +        + +E L K L NL+ L L  
Sbjct: 97  GNKIKDL-----STIEPL-KKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 697 LKVLKLRNNEF-LGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
           +K L L N+    G +  +      L  L      L  S+  +L K   L+ L++  N++
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRV 76

Query: 756 NGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSN 803
           +G      E  P L  L L S N    +   +       L+ +D+ + 
Sbjct: 77  SGGLEVLAEKCPNLTHLNL-SGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 12/145 (8%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLE-ISSLKMLVSLDL 163
               ++ L L ++           D    L  L+    G +    +  +  L  L  L+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLEL 71

Query: 164 SASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCH 223
           S + +          LE L +   NL  L L G  I        L  L NL+ L L +C 
Sbjct: 72  SDNRV-------SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 224 VAGPIHSSLSKLQLLTHLN-LDGND 247
           V        +  +LL  L  LDG D
Sbjct: 125 VTNLNDYRENVFKLLPQLTYLDGYD 149

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 853 NKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNL 912
           N+G    L         +   N      I   L   + L  L +S+N   G +       
Sbjct: 30  NEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87

Query: 913 KELGSLDLSHNQLSG-KIPEKLATLNFLSVLKLSQN 947
             L  L+LS N++      E L  L  L  L L   
Sbjct: 88  PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 479 LNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCK 538
           +  L L +++ +      +  +  +L  L       +   S +N     K+  L+LS  +
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLELSDNR 75

Query: 539 ITE-FPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
           ++           NL HL+LS N+IK ++           L  L+L + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 16/148 (10%)

Query: 147 HIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGP 206
                 ++++ LV LD          +     +E L     NLE L L  + +       
Sbjct: 18  LRNRTPAAVRELV-LDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLISVS--- 65

Query: 207 ILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSS-EVPDFLTNFSSLQYL 265
            L  L  L+ L L +  + G +     KL  LTHLNL GN L      + L     L+ L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 266 HLS---LCGLYGRVPEKIFLMPSLCFLD 290
            L    +  L         L+P L +LD
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 175 RRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSK 234
           RR +LE   +    + EL L     +      + +   NL  LSL +  +     S+L K
Sbjct: 12  RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPK 69

Query: 235 LQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
           L  L  L L  N +   +        +L +L+LS
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 4/120 (3%)

Query: 493 ITLEMF-KDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTN 551
           I LE+  +    +  L L     +       +  F  +  L L +  +    N L     
Sbjct: 14  IHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPK 72

Query: 552 LFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSN 611
           L  L+LS NRI G +      +    L HLNLS N L+      P      L  LDL + 
Sbjct: 73  LKKLELSENRIFGGLDMLAEKL--PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           +L+ L L +  L  S+ S L     LK L+L  N   G +  +     +L  L+LS N L
Sbjct: 50  NLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 732 A--GSLPKSLSKCTSLEVLDVGKN---QLNGSFPFWLETLPQLRVL 772
               +L + L K   L+ LD+       LN       + LPQL  L
Sbjct: 108 KDISTL-EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 665 LSLCNAFDLQVLDLSDNHLT-GSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRT 723
           L       ++ L L +     G I         L+ L L N   L +V   +     L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKK 75

Query: 724 LDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW-LETLPQLRVLVLQSN 777
           L+LS+N + G L     K  +L  L++  N+L        L+ L  L+ L L + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTL 507
           +  +++    +D  ++   G +     +   L  L L +       ++     L +L  L
Sbjct: 21  RTPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKL 76

Query: 508 ELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPN--FLRNQTNLFHLDLSNNRI 562
           ELSEN          +   P +  L LS  K+ +      L+    L  LDL N  +
Sbjct: 77  ELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 879 GEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNF 938
           G+I  +  +F  L  L++ N      + + L  L +L  L+LS N++ G +      L  
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 939 LSVLKLSQNLL 949
           L+ L LS N L
Sbjct: 97  LTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 405 SLQVLDLRNNSLQGI-IPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSL-SLREMDFSQ 462
           +++ L L N       I        ++E L L        L    N   L  L++++ S+
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLELSE 80

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSEN 512
           N++ G +     ++  L  L LS NK     TLE  K L  L +L+L   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 33/137 (24%), Positives = 49/137 (35%), Gaps = 8/137 (5%)

Query: 451 SSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELS 510
            S     MD  +     L   +   ++ L VL    +       L    +   L  L L 
Sbjct: 1   GSSGSSGMDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGL--TAEFVNLEFLSLI 57

Query: 511 ENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFL-RNQTNLFHLDLSNNRIKGEIPNW 569
                   S SN    PK+  L+LS  +I    + L     NL HL+LS N++K +I   
Sbjct: 58  NVGLI---SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTL 113

Query: 570 TWNVGDGKLVHLNLSHN 586
                   L  L+L + 
Sbjct: 114 EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 697 LKVLKLRNNEF-LGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQL 755
           ++ L L N +   G +  +     +L  L L    L  S+  +L K   L+ L++ +N++
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRI 83

Query: 756 NGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSN 803
            G      E LP L  L L S N    I   +       L+ +D+ + 
Sbjct: 84  FGGLDMLAEKLPNLTHLNL-SGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
           +   L+ L+L +  L S    S   +L  L  L LS +   G + +    L  L  L+LS
Sbjct: 47  EFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGG 196
            + L        + LE L K L  L+ L L  
Sbjct: 104 GNKLKDI-----STLEPL-KKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 29/130 (22%), Positives = 39/130 (30%), Gaps = 11/130 (8%)

Query: 820 MKKRTKESQESQILKFV-YLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFE 878
           MK+R      ++    V  L L N    D            L         + + N    
Sbjct: 10  MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIE-------GLTAEFVNLEFLSLINVGLI 62

Query: 879 GEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSG-KIPEKLATLN 937
             +   L     L  L +S N   G +      L  L  L+LS N+L      E L  L 
Sbjct: 63  -SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120

Query: 938 FLSVLKLSQN 947
            L  L L   
Sbjct: 121 CLKSLDLFNC 130

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 1e-05
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 654 LASNNLSGGIPLSLCNAF--DLQVLDL---SDNHLTGSIPSCLVSSNI------LKVLKL 702
           + S  L   +   +  +   +L+ L L    +++      +             LK L +
Sbjct: 200 IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259

Query: 703 RNNEFLGTVPQVIGNE---CSLRTLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQL 755
            + E    V ++         L T+D+S   L    A  L   + K   L+ +++  N L
Sbjct: 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 3e-04
 Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 834 KFVYLELSNLYYQDSVTLMNKGLSMELAKILTI-----FTSIDVSNNQFEGEIPEMLGDF 888
               LE   LY        +  ++     + +         + + + + +  + EM  + 
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 889 D---ALLVLNMSNNNFKG----QIPATLGNLKELGSLDLSHNQLSGKIPEKLA 934
           D    L  +++S           +   +  +K L  +++ +N LS ++ ++L 
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 11/118 (9%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ-VIGNECS 720
           GIP       + Q+L L DN +T   P    S   LK L L +N+ LG +P  V  +   
Sbjct: 37  GIPT------NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQ 89

Query: 721 LRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSN 777
           L  LDL  N L   LP ++  +   L+ L +  N+L    P  +E L  L  L L  N
Sbjct: 90  LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 23/171 (13%)

Query: 621 PASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFD----LQVL 676
           PA    LD       T +       +    + +L  N L   +       FD    L  L
Sbjct: 34  PADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQT-LS---AGVFDDLTELGTL 88

Query: 677 DLSDNHLTGSIPSCLVSSNI-LKVLKLRNNEFLGTVPQ-VIGNECSLRTLDLSQNHLAGS 734
            L++N L  S+P  +      L  L L  N+ L ++P  V      L+ L L+ N L  S
Sbjct: 89  GLANNQLA-SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ-S 145

Query: 735 LPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQSNNYD 780
           +P     K T+L+ L +  NQL    +G+F    + L +L+ + L  N +D
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAF----DRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNE-CS 720
           GIP       D + LDL    L     +       L  L L  N+ L T+   + ++   
Sbjct: 32  GIPA------DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTE 84

Query: 721 LRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQ 775
           L TL L+ N LA SLP  +    T L+ L +G NQL    +G F    + L +L+ L L 
Sbjct: 85  LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF----DRLTKLKELRLN 139

Query: 776 SN 777
           +N
Sbjct: 140 TN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 20/164 (12%)

Query: 431 ESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIF-QIKGLNVLRLSSNKF 489
           E L L        L          L  ++   N+LQ L    +F  +  L  L L++N+ 
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL 95

Query: 490 SGFITLE--MFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK---LSSCKITEFPN 544
           +   +L   +F  L QL  L L  N      SG    +F ++  LK   L++ ++   P 
Sbjct: 96  A---SLPLGVFDHLTQLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQLQSIPA 148

Query: 545 --FLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
             F    TNL  L LS N+++  +P+  ++   GKL  + L  N
Sbjct: 149 GAF-DKLTNLQTLSLSTNQLQS-VPHGAFD-RLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 36/170 (21%)

Query: 100 SSSLFD-LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKML 158
           S + F  L +L  LNL  N L +      FD L  L  L L+ +  +         L  L
Sbjct: 51  SDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109

Query: 159 VSLDLSASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRIL 217
             L L  +      QL+   L   V   LT L+EL L                 +N ++ 
Sbjct: 110 DKLYLGGN------QLKS--LPSGVFDRLTKLKELRLN----------------TN-QLQ 144

Query: 218 SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267
           S+P          +  KL  L  L+L  N L S           LQ + L
Sbjct: 145 SIP--------AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 45/205 (21%)

Query: 581 LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIP-PASIIFLDYSENKFTTNIP 639
            NL    +         L S  +  +  +++ ++    I    ++ +L    NK      
Sbjct: 24  ANLKKKSVTDAV-TQNELNS--IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--- 77

Query: 640 YNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSS-NILK 698
             I           L                 +L  L L+ N L  S+P+ +      LK
Sbjct: 78  --IS------ALKELT----------------NLTYLILTGNQLQ-SLPNGVFDKLTNLK 112

Query: 699 VLKLRNNEFLGTVPQVIGNE-CSLRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL- 755
            L L  N+ L ++P  + ++  +L  L+L+ N L  SLPK +  K T+L  LD+  NQL 
Sbjct: 113 ELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

Query: 756 ---NGSFPFWLETLPQLRVLVLQSN 777
               G F    + L QL+ L L  N
Sbjct: 171 SLPEGVF----DKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 49/174 (28%), Positives = 66/174 (37%), Gaps = 35/174 (20%)

Query: 106 LQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEI-SSLKMLVSLDLS 164
           L  +++L L  N L+          L +LT+L L+ +     +P  +   L  L  L L 
Sbjct: 62  LPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 165 ASGLVAPIQLRRANLEKLV-KNLTNLEELYLGGIDISGADWGPILSILSNLRIL------ 217
            + L         +L   V   LTNL  L L    +     G +   L+NL  L      
Sbjct: 118 ENQL--------QSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQ 168

Query: 218 --SLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPD--FLTNFSSLQYLHL 267
             SLP             KL  L  L L  N L S VPD  F    +SLQY+ L
Sbjct: 169 LQSLP--------EGVFDKLTQLKDLRLYQNQLKS-VPDGVF-DRLTSLQYIWL 212

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 532 LKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDG--KLVHLNLSHNMLE 589
           L L   + T  P  L N  +L  +DLSNNRI   + N          +L+ L LS+N L 
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSN---QSFSNMTQLLTLILSYNRLR 91

Query: 590 A-----FEKPGPNLTSTVLAVLDLHSNMLQGSFP 618
                 F+     L S  L +L LH N +    P
Sbjct: 92  CIPPRTFDG----LKS--LRLLSLHGNDIS-VVP 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 40/122 (32%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ-VIGNECS 720
           GIP           LDL  N L             L  L L  N+ L ++P  V     S
Sbjct: 25  GIPA------QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTS 77

Query: 721 LRTLDLSQNHLAGSLPKSL-SKCTSLEVLDVGKNQL----NGSFPFWLETLPQLRVLVLQ 775
           L  L+LS N L  SLP  +  K T L+ L +  NQL    +G F    + L QL+ L L 
Sbjct: 78  LTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVF----DKLTQLKDLRLY 132

Query: 776 SN 777
            N
Sbjct: 133 QN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1055
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 96.7 bits (239), Expect = 3e-22
 Identities = 80/346 (23%), Positives = 119/346 (34%), Gaps = 44/346 (12%)

Query: 32  CLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCC--SWDGVTCDP--RTGHVIGLD 87
           C    K  LL+ K+ L  +P       L SW  TTDCC  +W GV CD   +T  V  LD
Sbjct: 3   CNPQDKQALLQIKKDLG-NP-----TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLD 56

Query: 88  ISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGH 147
           +S   +       SSL +L  L  L +   +    P P    +L  L +L ++++  SG 
Sbjct: 57  LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116

Query: 148 IPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPI 207
           IP  +S +K LV+LD S +                                       P 
Sbjct: 117 IPDFLSQIKTLVTLDFSYNA--------------------------------LSGTLPPS 144

Query: 208 LSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHL 267
           +S L NL  ++     ++G I  S      L        +         T  +       
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVD 203

Query: 268 SLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDS 327
               +       +F           + ++L   L +   S  L  ++L   R  G LP  
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 328 INNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLP 373
           +  L  L  L +S  N  G IP   GNL       ++ N      P
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.4 bits (207), Expect = 4e-18
 Identities = 73/270 (27%), Positives = 107/270 (39%), Gaps = 7/270 (2%)

Query: 716 GNECSLRTLDLSQNHLAG--SLPKSLSKCTSLEVLDVGKN-QLNGSFPFWLETLPQLRVL 772
                +  LDLS  +L     +P SL+    L  L +G    L G  P  +  L QL  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
            +   N  G+I D  +      L  +D S N  SG LP         +      ++ S  
Sbjct: 107 YITHTNVSGAIPDFLSQIKT--LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL 892
           +   Y   S L+   +++       +           +D+S N  EG+   + G      
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT- 223

Query: 893 VLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGE 952
                  N        +G  K L  LDL +N++ G +P+ L  L FL  L +S N L GE
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 953 IPRGPQFATFTAASFEGNAGLCGFPLPKAC 982
           IP+G     F  +++  N  LCG PLP AC
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 5e-16
 Identities = 47/266 (17%), Positives = 81/266 (30%), Gaps = 5/266 (1%)

Query: 449 NASSLSLREMDFSQNKLQGL--VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGT 506
           +  +  +  +D S   L     +P S+  +  LN L +                L QL  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 507 LELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEI 566
           L ++  N S  +    S +   +      +      P  + +  NL  +    NRI G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIF 626
           P+   +    KL             + P       +  V    + +   +  +  +    
Sbjct: 166 PDSYGS--FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 627 LDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGS 686
                 K +                  L +N + G +P  L     L  L++S N+L G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 687 IPSCLVSSNILKVLKLRNNEFLGTVP 712
           IP          V    NN+ L   P
Sbjct: 284 IPQGGNLQR-FDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.2 bits (157), Expect = 8e-12
 Identities = 57/269 (21%), Positives = 103/269 (38%), Gaps = 28/269 (10%)

Query: 153 SSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILS 212
           +    + +LDLS   L  P  +  +     + NL  L  LY+GGI+       P ++ L+
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSS-----LANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 213 NLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGL 272
            L  L +   +V+G I   LS+++ L  L+   N LS  +P  +++  +L  +      +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 273 YGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRF------------ 320
            G +P+       L      S + LTG +P    +  L  ++LS                
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 321 -----------SGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFS 369
                             +     L  L+L +   +G++P     L  L +++ S NN  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 370 GSLPSFASSNKVISLKFAHNSFTGTIPLS 398
           G +P   +  +     +A+N      PL 
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 1e-09
 Identities = 56/302 (18%), Positives = 96/302 (31%), Gaps = 36/302 (11%)

Query: 326 DSINNLALLEDLELSDCNFFG--SIPSSFGNLTELINIDFSRN-NFSGSLPSFASSNKVI 382
           D+      + +L+LS  N      IPSS  NL  L  +      N  G +P   +    +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 383 SLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHG 442
              +  ++        +  Q+ +L  LD   N+L G +P S+ +  ++  +    N+  G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 443 QLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLR 502
            +     + S     M  S+N+L G +P +   +    V    +        L       
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 503 QLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNR 561
           Q           S         +   +  L L + +I    P  L     L  L++S N 
Sbjct: 224 QKIH----LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 562 IKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP 621
           + GEIP                             NL      V    +N      P+P 
Sbjct: 280 LCGEIPQGG--------------------------NLQR--FDVSAYANNKCLCGSPLPA 311

Query: 622 AS 623
            +
Sbjct: 312 CT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 3e-09
 Identities = 60/260 (23%), Positives = 98/260 (37%), Gaps = 6/260 (2%)

Query: 209 SILSNLRILSLPDCHVAG--PIHSSLSKLQLLTHLNLDGND-LSSEVPDFLTNFSSLQYL 265
           +    +  L L   ++    PI SSL+ L  L  L + G + L   +P  +   + L YL
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 266 HLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLP 325
           +++   + G +P+ +  + +L  LD S N+      P       L  I     R SG +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 326 DSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLK 385
           DS  + + L        N              L  +D SRN   G       S+K     
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 386 FAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLE 445
               +         G    +L  LDLRNN + G +P+ L   + + SL +  N   G++ 
Sbjct: 227 HLAKNSLAFDLGKVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 446 KFQNASSLSLREMDFSQNKL 465
           +  N          ++ NK 
Sbjct: 286 QGGNLQRFD--VSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 9e-06
 Identities = 62/312 (19%), Positives = 105/312 (33%), Gaps = 49/312 (15%)

Query: 596 PNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLA 655
            +  +  +  LDL    L   +PIP                    ++ N       +   
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPS-------------------SLANLPYLNFLYIGG 85

Query: 656 SNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVI 715
            NNL G IP ++     L  L ++  +++G+IP  L     L  L    N   GT+P  I
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145

Query: 716 GNECSLRTLDLSQNHLAGSLPKSLSKCTSLEV-LDVGKNQLNGSFPFWLETLPQLRVLVL 774
            +  +L  +    N ++G++P S    + L   + + +N+L G  P     L        
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL------ 199

Query: 775 QSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILK 834
                                  +D+S N   G+    +       K    ++  +  L 
Sbjct: 200 ---------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 835 FVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVL 894
            V L  +          +   L   L + L    S++VS N   GEIP+  G+     V 
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296

Query: 895 NMSNNNFKGQIP 906
             +NN      P
Sbjct: 297 AYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.6 bits (200), Expect = 8e-17
 Identities = 74/454 (16%), Positives = 135/454 (29%), Gaps = 86/454 (18%)

Query: 496 EMFKD--LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLF 553
           ++F D  L +     L + N +  VS ++     ++ TL+     I      +    NL 
Sbjct: 14  QIFTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDG-VEYLNNLT 69

Query: 554 HLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            ++ SNN++    P         KLV + +++N +                     +   
Sbjct: 70  QINFSNNQLTDITPLKNLT----KLVDILMNNNQIADITPLANLTNL------TGLTLFN 119

Query: 614 QGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDL 673
                I P   +         +  I          ++      N ++   PL+     + 
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 674 QVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAG 733
             +  +       +         L+ L   NN+     P  I    +L  L L+ N L  
Sbjct: 180 LDISSNKVSDISVLAKL----TNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 233

Query: 734 SLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFA 793
               +L+  T+L  LD+  NQ++   P     L +L  L                     
Sbjct: 234 --IGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTEL--------------------- 268

Query: 794 LLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMN 853
                 + +N  S   P     +   ++                               N
Sbjct: 269 -----KLGANQISNISPLAGLTALTNLELN----------------------------EN 295

Query: 854 KGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLK 913
           +   +     L   T + +  N      P  +     L  L  +NN       ++L NL 
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 914 ELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
            +  L   HNQ+S   P  LA L  ++ L L+  
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 1e-16
 Identities = 66/401 (16%), Positives = 127/401 (31%), Gaps = 38/401 (9%)

Query: 354 NLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
            L E +     + N + ++ S    ++V +L+           + Y   L +L  ++  N
Sbjct: 20  ALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQINFSN 75

Query: 414 NSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESI 473
           N L  I P    TK     +   Q      L    N + L+L     +       +    
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK 533
                 N +   S         ++    +      L+       +  S++ +       K
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEK 593
           L++                  L  +NN+I    P          L  L+L+ N L   + 
Sbjct: 196 LTNL---------------ESLIATNNQISDITPLGILT----NLDELSLNGNQL---KD 233

Query: 594 PGPNLTSTVLAVLDLHSNMLQGSFPIPPA-SIIFLDYSENKFTTNIPYNIGNYINYAVFF 652
            G   + T L  LDL +N +    P+     +  L    N+ +   P      +      
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
                ++S    L      +L  L L  N+++   P   ++   L+ L   NN+   +  
Sbjct: 294 ENQLEDISPISNL-----KNLTYLTLYFNNISDISPVSSLTK--LQRLFFANNKV--SDV 344

Query: 713 QVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKN 753
             + N  ++  L    N ++   P  L+  T +  L +   
Sbjct: 345 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 4e-16
 Identities = 70/403 (17%), Positives = 130/403 (32%), Gaps = 38/403 (9%)

Query: 184 KNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNL 243
             L    +  LG  +++        + L  +  L      +       +  L  LT +N 
Sbjct: 19  TALAEKMKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINF 73

Query: 244 DGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPE 303
             N L+   P  L N + L  + ++                +      +       +   
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNN---------QIADITPLANLTNLTGLTLFNNQI 122

Query: 304 FPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDF 363
                   +  L+    S      I+ L+ L  L+        +      NLT  +    
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT-LERLD 181

Query: 364 SRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKS 423
             +N    +   A    + SL   +N  +   PL       +L  L L  N L+ I   +
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT---NLDELSLNGNQLKDI--GT 236

Query: 424 LYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLR 483
           L +  ++  L L  N+    L      +   L E+    N++  + P     + GL  L 
Sbjct: 237 LASLTNLTDLDLANNQISN-LAPLSGLT--KLTELKLGANQISNISP-----LAGLTALT 288

Query: 484 LSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFP 543
                 +    +    +L+ L  L L  NN S     S+     K+  L  ++ K+++  
Sbjct: 289 NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS---LTKLQRLFFANNKVSDVS 345

Query: 544 NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHN 586
           + L N TN+  L   +N+I    P         ++  L L+  
Sbjct: 346 S-LANLTNINWLSAGHNQISDLTPLANLT----RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 6e-14
 Identities = 60/391 (15%), Positives = 127/391 (32%), Gaps = 41/391 (10%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           +  + S  DL ++  L      + S     G + L +LT +N S +  +   PL   +L 
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITPL--KNLT 88

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
            LV + ++ + +     L                                   I     +
Sbjct: 89  KLVDILMNNNQIADITPLANLTNLTG--------------------LTLFNNQITDIDPL 128

Query: 217 LSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRV 276
            +L + +      +++S +  L+ L              L   ++L  L           
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 277 PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLED 336
              +    +     +++N+ ++   P    ++ L  + L+  +       ++ +L  L D
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 337 LELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIP 396
           L+L++       P     LT+L  +    N  S   P    +           +      
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTAL----TNLELNENQLED 299

Query: 397 LSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLR 456
           +S    L +L  L L  N++  I P S  T   ++ L    NK    +    N +  ++ 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSD-VSSLANLT--NIN 354

Query: 457 EMDFSQNKLQGLVPESIFQIKGLNVLRLSSN 487
            +    N++  L P  +  +  +  L L+  
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.8 bits (172), Expect = 2e-13
 Identities = 63/384 (16%), Positives = 126/384 (32%), Gaps = 28/384 (7%)

Query: 330 NLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHN 389
            LA      L   N   ++  +  +L ++  +   R     S+      N +  + F++N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNN 76

Query: 390 SFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQN 449
             T   PL    +L+ + + + +   +  +   +  T  ++ +  +        L     
Sbjct: 77  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 450 ASSLSLR--------EMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDL 501
               S           +   Q    G     +  +  L  L       +    + +   L
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196

Query: 502 RQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNR 561
             L +L  + N  S     +   +   +  L L+  ++ +      + TNL  LDL+NN+
Sbjct: 197 TNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQ 252

Query: 562 IKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP 621
           I    P         KL  L L  N +     P   LT+    +    + +   S     
Sbjct: 253 ISNLAPLSGLT----KLTELKLGANQISNIS-PLAGLTALTN-LELNENQLEDISPISNL 306

Query: 622 ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDN 681
            ++ +L    N  +   P  + +       F  A+N +S     SL N  ++  L    N
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLF-FANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 682 HLTGSIPSCLVSSNILKVLKLRNN 705
            ++   P  L +   +  L L + 
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 1e-10
 Identities = 60/406 (14%), Positives = 122/406 (30%), Gaps = 44/406 (10%)

Query: 131 LFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLE 190
           L       L  +  +  +    + L  + +L     G+         +++ + + L NL 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGI--------KSIDGV-EYLNNLT 69

Query: 191 ELYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSS 250
           ++      ++       ++ L NL  L     +       +              N+  +
Sbjct: 70  QINFSNNQLTD------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 251 EVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQL 310
           ++       +  +    S           +  +  L F +  ++     +L         
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI- 182

Query: 311 KVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
                  +         +  L  LE L  ++       P      T L  +  + N    
Sbjct: 183 -------SSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD 233

Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSI 430
            + + AS   +  L  A+N  +   PLS    L  L  L L  N +  I P +  T  + 
Sbjct: 234 -IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 431 ESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFS 490
             L   Q +    +   +N     L  +    N +  + P  +  +  L  L  ++NK S
Sbjct: 290 LELNENQLEDISPISNLKN-----LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVS 342

Query: 491 GFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSS 536
               +    +L  +  L    N  S     +N     +I  L L+ 
Sbjct: 343 D---VSSLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 68  CCSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSG 127
               + ++      ++  L +  + I+      S +  L +LQ L  A+N +      S 
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISD----ISPVSSLTKLQRLFFANNKVSD---VSS 346

Query: 128 FDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
              L ++  L+  ++  S   PL  ++L  +  L L+
Sbjct: 347 LANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLN 381

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 55/306 (17%), Positives = 97/306 (31%), Gaps = 37/306 (12%)

Query: 293 SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSF 352
           S+  L     + PP     +++L   + +        NL  L  L L +       P +F
Sbjct: 18  SDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 353 GNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLR 412
             L +L  +  S+N                            +P      L  L+V +  
Sbjct: 76  APLVKLERLYLSKNQLK------------------------ELPEKMPKTLQELRVHENE 111

Query: 413 NNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPES 472
              ++  +   L     +E           +   FQ    LS   +  +   +  + P+ 
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY--IRIADTNITTI-PQG 168

Query: 473 IFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTL 532
           +     L  L L  NK +        K L  L  L LS  N    V   +    P +  L
Sbjct: 169 LP--PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLS-FNSISAVDNGSLANTPHLREL 224

Query: 533 KLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNW----TWNVGDGKLVHLNLSHNML 588
            L++ K+ + P  L +   +  + L NN I     N      +N        ++L  N +
Sbjct: 225 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 589 EAFEKP 594
           + +E  
Sbjct: 285 QYWEIQ 290

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.1 bits (165), Expect = 8e-13
 Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 13/261 (4%)

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           D  +LDL +N +T        +   L  L L NN+     P        L  L LS+N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
              LP+ + K      L V +N++          L Q+ V+ L +N    S  +      
Sbjct: 92  -KELPEKMPKTLQE--LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 792 FALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTL 851
              L  I I+  N +  +P     S   +      ++ +++       L+NL        
Sbjct: 149 MKKLSYIRIADTNIT-TIPQGLPPSLTELHLD--GNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 852 MNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKG------QI 905
               +             + ++NN+   ++P  L D   + V+ + NNN           
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 906 PATLGNLKELGSLDLSHNQLS 926
           P           + L  N + 
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 51/314 (16%), Positives = 89/314 (28%), Gaps = 39/314 (12%)

Query: 69  CSWDGVTCDPRTGHVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGF 128
           C    V C       +  D+                       L+L +N +        F
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPD-----------------TALLDLQNNKITEIK-DGDF 51

Query: 129 DRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTN 188
             L +L  L L  +  S   P   + L  L  L LS + L    +     L++L  +   
Sbjct: 52  KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111

Query: 189 LEELYLGGIDISGADW------------GPILSILSNLRILSLPDCHVAGPIHSSLSKLQ 236
           + ++     +                  G        ++ LS                  
Sbjct: 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

Query: 237 LLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSN 296
            LT L+LDGN ++      L   ++L  L LS   +       +   P L  L + +N+ 
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL-NNNK 230

Query: 297 LTGSLPEFPPSSQLKVIELSETRFSG------KLPDSINNLALLEDLELSD--CNFFGSI 348
           L            ++V+ L     S         P      A    + L      ++   
Sbjct: 231 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290

Query: 349 PSSFGNLTELINID 362
           PS+F  +     + 
Sbjct: 291 PSTFRCVYVRAAVQ 304

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 8e-12
 Identities = 46/308 (14%), Positives = 85/308 (27%), Gaps = 37/308 (12%)

Query: 209 SILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
            +  +  +L L +  +          L+ L  L L  N +S   P        L+ L+LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 269 LCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSI 328
              L     +    +  L   +                   +                  
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV------------------ 129

Query: 329 NNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAH 388
                  +L  +     G    +F  + +L  I  +  N +        S   + L    
Sbjct: 130 -------ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL--DG 180

Query: 389 NSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQ 448
           N  T     S    L +L  L L  NS+  +   SL     +  L L  NK         
Sbjct: 181 NKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 449 NASSLSLREMDFSQNKLQGL------VPESIFQIKGLNVLRLSSNKFSGF-ITLEMFKDL 501
           +     ++ +    N +  +       P    +    + + L SN    + I    F+ +
Sbjct: 240 D--HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

Query: 502 RQLGTLEL 509
                ++L
Sbjct: 298 YVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 49/260 (18%), Positives = 95/260 (36%), Gaps = 14/260 (5%)

Query: 504 LGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEF-PNFLRNQTNLFHLDLSNNRI 562
              L+L  N  +    G   N+   + TL L + KI++  P        L  L LS N++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 563 KGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPA 622
           K         + + ++    ++      F      +   +       S +  G+F     
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK- 150

Query: 623 SIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNH 682
            + ++  ++   TT IP  +   +       L  N ++     SL    +L  L LS N 
Sbjct: 151 KLSYIRIADTNITT-IPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 683 LTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAG------SLP 736
           ++      L ++  L+ L L NN  L  VP  + +   ++ + L  N+++         P
Sbjct: 207 ISAVDNGSLANTPHLRELHL-NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 737 KSLSKCTSLEVLDVGKNQLN 756
              +K  S   + +  N + 
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 46/259 (17%), Positives = 78/259 (30%), Gaps = 33/259 (12%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           C LR +  S   L   +PK L       +LD+  N++        + L  L  L+L +N 
Sbjct: 10  CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 779 YDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYL 838
                           L+ + +S N     LP +  ++ + ++       E++I K    
Sbjct: 67  ISKISPGAF--APLVKLERLYLSKNQLK-ELPEKMPKTLQELRV-----HENEITKVRKS 118

Query: 839 ELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSN 898
             + L     V L                        +  G           L  + +++
Sbjct: 119 VFNGLNQMIVVELGTN-------------------PLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 899 NNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQ 958
            N          +L EL    L  N+++      L  LN L+ L LS N +         
Sbjct: 160 TNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 959 FATFTAASFEGNAGLCGFP 977
                      N  L   P
Sbjct: 217 NTPHLRELHLNNNKLVKVP 235

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 1e-13
 Identities = 39/282 (13%), Positives = 78/282 (27%), Gaps = 18/282 (6%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
           T       +   P  +        + L  NRI                 +L +       
Sbjct: 15  TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSNV 67

Query: 591 FEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSE-----NKFTTNIPYNIGNY 645
             +      + +  +  L  +       + PA+   L               +   +   
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 646 INYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNN 705
           +    +  L  N L      +  +  +L  L L  N ++          + L  L L  N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 706 EFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLET 765
                 P    +   L TL L  N+L+    ++L+   +L+ L +  N            
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPL 246

Query: 766 LPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSG 807
              L+     S+    S+         A   +  +++N+  G
Sbjct: 247 WAWLQKFRGSSSEVPCSLPQR-----LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 4e-11
 Identities = 43/275 (15%), Positives = 81/275 (29%), Gaps = 7/275 (2%)

Query: 668 CNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLS 727
           C              L  ++P  + ++   + + L  N              +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 728 QNHLAGSLPKSLSKCTSLEVLDVGKNQLNGS-FPFWLETLPQLRVLVLQSNNYDGSIKDT 786
            N LA     + +    LE LD+  N    S  P     L +L  L L            
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 787 QTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQ 846
               A   LQ + +  N         +             ++ S + +  +  L +L   
Sbjct: 125 FRGLAA--LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 847 DSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIP 906
                    +     + L    ++ +  N       E L    AL  L +++N +     
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

Query: 907 ATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSV 941
           A       L     S +++   +P++LA  +   +
Sbjct: 243 A-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 14/284 (4%)

Query: 135 THLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYL 194
              +    G    +P+ I +      + L  + +               +   NL  L+L
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVP-------AASFRACRNLTILWL 63

Query: 195 GGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPD 254
               ++  D      +    ++    +  +     ++   L  L  L+LD   L    P 
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 255 FLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIE 314
                ++LQYL+L    L     +    + +L  L +  N   +     F     L  + 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 315 LSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPS 374
           L + R +   P +  +L  L  L L   N       +   L  L  +  + N +     +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 375 FASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQG 418
                 +   + + +    ++P     +L    +  L  N LQG
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (147), Expect = 1e-10
 Identities = 47/284 (16%), Positives = 87/284 (30%), Gaps = 30/284 (10%)

Query: 209 SILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
            I +  + + L    ++    +S    + LT L L  N L+       T  + L+ L LS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 269 LCGLYGRV-PEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDS 327
                  V P     +  L  L +            F   + L+ + L +        D+
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 328 INNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFA 387
             +L  L  L L           +F  L  L  +   +N  +   P        +   + 
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 388 HNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKF 447
             +    +P      L +LQ L L +N                  L              
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--------ARPLW------------- 247

Query: 448 QNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSG 491
                  L++   S +++   +P+    + G ++ RL++N   G
Sbjct: 248 -----AWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 12/260 (4%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNK 464
           + Q + L  N +  +   S    +++  L L  N             +L  +       +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSN 524
           L+ + P +   +  L+ L L        +   +F+ L  L  L L +N        +  +
Sbjct: 93  LRSVDPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 525 MFPKIGTLKLSSCKITEFP-NFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNL 583
           +   +  L L   +I+  P    R   +L  L L  NR+    P+   ++G    ++L  
Sbjct: 152 LG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 584 SHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPP--ASIIFLDYSENKFTTNIPYN 641
           ++      E   P      L  L L+ N         P  A +     S ++   ++P  
Sbjct: 211 NNLSALPTEALAPLRA---LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 642 IGNYINYAVFFSLASNNLSG 661
           +           LA+N+L G
Sbjct: 268 LAGR----DLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 38/225 (16%), Positives = 66/225 (29%), Gaps = 28/225 (12%)

Query: 723 TLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS 782
           T    Q  L  ++P  +    + + + +  N+++            L +L L SN     
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 783 IKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSN 842
                T  A    + +D+S N    ++    F     +                 L L  
Sbjct: 72  DAAAFTGLALL--EQLDLSDNAQLRSVDPATFHGLGRLH---------------TLHLDR 114

Query: 843 LYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFK 902
              Q+        L   L + L     + + +N  +    +   D   L  L +  N   
Sbjct: 115 CGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 903 GQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
                    L  L  L L  N+++   P     L  L  L L  N
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 5e-11
 Identities = 33/270 (12%), Positives = 85/270 (31%), Gaps = 21/270 (7%)

Query: 674 QVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL-A 732
           Q LDL+  +L   +   L+S  ++   +   +     + +       ++ +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEV 60

Query: 733 GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAF 792
            +L   LS+C+ L+ L +   +L+      L     L  L L   +           ++ 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 793 ALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLM 852
           + L  +++S          +   +              +         + +    ++  +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 853 NKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSN-NNFKGQIPATLGN 911
           +                    +   + +  +     + L  L++S   +   +    LG 
Sbjct: 181 D-----------------LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 912 LKELGSLDLSHNQLSGKIPEKLATLNFLSV 941
           +  L +L +      G +      L  L +
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 44/294 (14%), Positives = 87/294 (29%), Gaps = 24/294 (8%)

Query: 456 REMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFS 515
           + +D +   L   V   +   +G+   R   +     +         ++  ++LS +   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIE 59

Query: 516 FNVSGSNSNMFPKIGTLKLSSCKIT-EFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVG 574
            +      +   K+  L L   +++    N L   +NL  L+LS      E    T    
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 575 DGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKF 634
             +L  LNLS       +     +                         +    Y +N  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAV----------------AHVSETITQLNLSGYRKNLQ 163

Query: 635 TTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSD-NHLTGSIPSCLVS 693
            +++   +    N        S  L             LQ L LS    +       L  
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 223

Query: 694 SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEV 747
              LK L++      GT+  +     +L  L ++ +H       ++    + E+
Sbjct: 224 IPTLKTLQVFGIVPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 47/278 (16%), Positives = 85/278 (30%), Gaps = 21/278 (7%)

Query: 135 THLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYL 194
             L+L+       +   + S   +++     S +  P+            +   ++ + L
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPL--------AEHFSPFRVQHMDL 53

Query: 195 GGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPD 254
               I  +    ILS  S L+ LSL    ++ PI ++L+K   L  LNL G    SE   
Sbjct: 54  SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 255 F--------LTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPP 306
                    L   +       +   +   V      +  L       N   +        
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 307 SSQLKVIELSE-TRFSGKLPDSINNLALLEDLELSDCNFF-GSIPSSFGNLTELINIDFS 364
              L  ++LS+              L  L+ L LS C           G +  L  +   
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 365 RNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQ 402
                G+L     +     L+   + FT     + G++
Sbjct: 234 GIVPDGTLQLLKEALP--HLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 8e-07
 Identities = 45/251 (17%), Positives = 92/251 (36%), Gaps = 8/251 (3%)

Query: 82  HVIGLDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSY 141
            VI      SF+   +    S F   R+QH++L+++ +  S       +   L +L+L  
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPF---RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 142 SGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISG 201
              S  I   ++    LV L+LS     +   L+         +  NL   +        
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 202 ADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDL-SSEVPDFLTNFS 260
                +   ++ L +           + + + +   L HL+L  + +  ++        +
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 261 SLQYLHLSLC-GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETR 319
            LQ+L LS C  +      ++  +P+L  L V       G+L        L  ++++ + 
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD-GTLQLLK--EALPHLQINCSH 257

Query: 320 FSGKLPDSINN 330
           F+     +I N
Sbjct: 258 FTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 8e-06
 Identities = 36/242 (14%), Positives = 75/242 (30%), Gaps = 14/242 (5%)

Query: 192 LYLGGIDISGADWGPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSE 251
           L L G ++     G +LS    +     P   +  P+    S  ++  H++L  + +   
Sbjct: 5   LDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIEVS 61

Query: 252 -VPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQL 310
            +   L+  S LQ L L    L   +   +    +L  L++S  S  +    +   SS  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 311 KVIELSETRFSGKLPDSINNLAL----------LEDLELSDCNFFGSIPSSFGNLTELIN 360
           ++ EL+ +         +               L     +      S           ++
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 361 IDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGII 420
           +  S    +     F   N +  L  +         L    ++ +L+ L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 421 PK 422
             
Sbjct: 242 QL 243

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 39/267 (14%), Positives = 86/267 (32%), Gaps = 18/267 (6%)

Query: 506 TLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGE 565
           TL+L+  N   +V+G   +    +   +     + +      +   + H+DLSN+ I+  
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 566 IPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASII 625
             +   +    KL +L+L    L     P  N  +    ++ L+ +   G       +++
Sbjct: 62  TLHGILS-QCSKLQNLSLEGLRLS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 626 FLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTG 685
                      N+ +       +        +     + LS       +    +      
Sbjct: 118 S--SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 686 SIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQ-NHLAGSLPKSLSKCTS 744
           ++    +S          +        Q       L+ L LS+   +       L +  +
Sbjct: 176 NLVHLDLS---------DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 745 LEVLDVGKNQLNGSFPFWLETLPQLRV 771
           L+ L V     +G+     E LP L++
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 45/272 (16%), Positives = 87/272 (31%), Gaps = 11/272 (4%)

Query: 86  LDISSSFITGGINGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFS 145
           LD++   +   + G       Q +       + +            F + H++LS S   
Sbjct: 5   LDLTGKNLHPDVTGRLLS---QGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIE 59

Query: 146 G-HIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADW 204
              +   +S    L +L L    L  PI    A    LV+   +    +      +    
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 205 GPILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQY 264
              L  L+        + HV   +      +  L       N   S++   +    +L +
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 265 LHLSLCGLY-GRVPEKIFLMPSLCFLDVSSNSNLTG-SLPEFPPSSQLKVIELSETRFSG 322
           L LS   +      ++ F +  L  L +S   ++   +L E      LK +++      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 323 KLPDSINNLALLEDLELSDCNFFGSIPSSFGN 354
            L         L  L+++  +F      + GN
Sbjct: 240 TLQLLKEA---LPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 32/290 (11%)

Query: 361 IDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGII 420
           +D +  N    +     S  VI+ +   +      PL+       +Q +DL N+ ++   
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQ--PLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 421 PKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLN 480
              + ++ S                         L+ +     +L   +  ++ +   L 
Sbjct: 63  LHGILSQCS------------------------KLQNLSLEGLRLSDPIVNTLAKNSNLV 98

Query: 481 VL---RLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSC 537
            L     S        TL           L    +    +V  + +++   I  L LS  
Sbjct: 99  RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158

Query: 538 KITEFPNFLRN---QTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKP 594
           +     + L     +         ++ +  +   +        L HL+LS       E  
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 595 GPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGN 644
                   L  L +   +  G+  +   ++  L  + + FTT     IGN
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 268

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (149), Expect = 1e-10
 Identities = 63/484 (13%), Positives = 123/484 (25%), Gaps = 43/484 (8%)

Query: 307 SSQLKVIELSETRFSGK-LPDSINNLALLEDLELSDCNF----FGSIPSSFGNLTELINI 361
           S  ++ +++     S     + +  L   + + L DC         I S+      L  +
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 362 DFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIP 421
           +   N                            +          +Q L L+N  L G   
Sbjct: 61  NLRSNELGDVGVH-------------------CVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

Query: 422 KSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNV 481
             L +       L   +     L                 + +   L   S+       +
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161

Query: 482 LRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITE 541
             +   K           D+ + G   L +             +     T    S    +
Sbjct: 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT----SDNCRD 217

Query: 542 FPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTST 601
               + ++ +L  L L +N++                  L             G      
Sbjct: 218 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 277

Query: 602 VLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSG 661
           VL   +    +      +       L  +  +    +        ++    +  S+  S 
Sbjct: 278 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAACCSHFSSV 335

Query: 662 GIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEF----LGTVPQVIGN 717
                      +    L D  +           ++L+VL L + +       ++   +  
Sbjct: 336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 395

Query: 718 ECSLRTLDLSQNHLAGSLPKSLSK-----CTSLEVLDVGKNQLNGSFPFWLETL----PQ 768
             SLR LDLS N L  +    L +        LE L +     +      L+ L    P 
Sbjct: 396 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 455

Query: 769 LRVL 772
           LRV+
Sbjct: 456 LRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 4e-08
 Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 188 NLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV----AGPIHSSLSKLQLLTHLNL 243
           +++ L +   ++S A W  +L +L   +++ L DC +       I S+L     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 244 DGNDLSSEVPDFL-----TNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLDVSSNSN 296
             N+L       +     T    +Q L L  C L G     +             + +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 2e-06
 Identities = 51/442 (11%), Positives = 114/442 (25%), Gaps = 17/442 (3%)

Query: 289 LDVSSNSNLTGSLPEFPPS-SQLKVIELSETRFSGK----LPDSINNLALLEDLELSDCN 343
           LD+           E  P   Q +V+ L +   +      +  ++     L +L L    
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 344 FFGSIPSSFGNLTELINIDFSRNNFSGSLPSFAS-SNKVISLKFAHNSFTGTIPLSYGDQ 402
                        +  +    + +      + A       +L+         +  +    
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126

Query: 403 LISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQ 462
                + +   +    +    L       +              F+  +  +    +   
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186

Query: 463 NKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSN 522
             L   + +S  Q++ L +        +      +              +N   +V  + 
Sbjct: 187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS-LRELALGSNKLGDVGMAE 245

Query: 523 SNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLN 582
                   + +L +  I E     +   +L  +  +   +K           +G  +   
Sbjct: 246 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 305

Query: 583 LSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNI 642
                    E       S   A     S++L  +  +    I      +           
Sbjct: 306 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 365

Query: 643 GNYINYAVFFSLASNNLSGGIPLSLCNAF----DLQVLDLSDNHLTGSIPSCLVSS---- 694
                  V   LA  ++S     SL         L+ LDLS+N L  +    LV S    
Sbjct: 366 QPGSVLRVL-WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 695 -NILKVLKLRNNEFLGTVPQVI 715
             +L+ L L +  +   +   +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 44/446 (9%), Positives = 95/446 (21%), Gaps = 18/446 (4%)

Query: 354 NLTELINIDFSRNNFSGS-LPSFASSNKVI-SLKFAHNSFTGTIPLSYGD---QLISLQV 408
           ++  L   D      S +         +    ++      T               +L  
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 409 LDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGL 468
           L+LR+N L  +    +       S  + +               LS         +   L
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 469 VPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPK 528
               +       +     +       L++        + E   +            +   
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 529 IGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNML 588
                          +       L                               S+ + 
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 589 EAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINY 648
           +              + L       +          +       +    +        + 
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 649 AVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFL 708
                  +    G    SL             +  +    +  +    +   +L +    
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 709 GTVPQVIGNECSLRTLDLSQNHL----AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWL- 763
                +      LR L L+   +      SL  +L    SL  LD+  N L  +    L 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 764 ETLPQ----LRVLVLQSNNYDGSIKD 785
           E++ Q    L  LVL    +   ++D
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 868 TSIDVSNNQF-EGEIPEMLGDFDALLVLNMSNNNFKGQ----IPATLGNLKELGSLDLSH 922
            S+D+   +  +    E+L       V+ + +          I + L     L  L+L  
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 923 NQLSGKIPEKLATLNFLSVLKL 944
           N+L       +         K+
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 7e-05
 Identities = 47/442 (10%), Positives = 103/442 (23%), Gaps = 20/442 (4%)

Query: 531 TLKLSSCKITE--FPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV--GDGKLVHLNLSHN 586
           +L +   ++++  +   L        + L +  +         +    +  L  LNL  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 587 ML--EAFEKPGPNL--TSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNI 642
            L           L   S  +  L L  N           S         +        +
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSL-QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124

Query: 643 GNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKL 702
           G+     +   L               +      +   + L        ++ +   + + 
Sbjct: 125 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 184

Query: 703 RNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFW 762
                   +        +L+                +    +           N      
Sbjct: 185 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL--ALGSNKLGDVG 242

Query: 763 LETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKK 822
           +  L    +            +   TA     L  +  +  +      A       G + 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 823 RTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIP 882
             +   E           S  +     +  +  L+     +    ++  + +        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 883 EMLGDFDALLVLNMSNNNFKGQ----IPATLGNLKELGSLDLSHNQLSGKIPEKLAT--- 935
            +      L VL +++ +        + ATL     L  LDLS+N L      +L     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 936 --LNFLSVLKLSQNLLVGEIPR 955
                L  L L       E+  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 868 TSIDVSNNQFEGE----IPEMLGDFDALLVLNMSNNNFKGQIPATLG-----NLKELGSL 918
             + +++          +   L    +L  L++SNN         L          L  L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 919 DLSHNQLSGKIPEKLATL 936
            L     S ++ ++L  L
Sbjct: 432 VLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 109 LQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSG----HIPLEISSLKMLVSLDLS 164
           +Q L++    L  + +      L     + L   G +      I   +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGG 196
           ++ L          L+ L      +++L L  
Sbjct: 64  SNELGD--VGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 0.001
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 202 ADWGPILSILSNLRILSLPDCHV----AGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFL- 256
                +    S LR+L L DC V       + ++L     L  L+L  N L       L 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 257 ----TNFSSLQYLHLSLCGLYGRVPEKI 280
                    L+ L L        + +++
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 2e-10
 Identities = 34/211 (16%), Positives = 57/211 (27%), Gaps = 9/211 (4%)

Query: 715 IGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVL 774
           +    S   ++  + +L  +LP  L K     +L + +N L       L    +L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 775 QSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILK 834
                     D                S+N   +LP                ++ + +  
Sbjct: 63  DRAELTKLQVDGTLPV-----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 835 FVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVL 894
                L  L          K L   L         + ++NN        +L   + L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 895 NMSNNNFKGQIPATLGNLKELGSLDLSHNQL 925
            +  N+    IP        L    L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-08
 Identities = 37/216 (17%), Positives = 67/216 (31%), Gaps = 12/216 (5%)

Query: 688 PSCLVS--SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSL 745
           P C VS  ++ L+V   + N  L  +P  +        L LS+N L      +L   T L
Sbjct: 2   PICEVSKVASHLEVNCDKRN--LTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRL 57

Query: 746 EVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNF 805
             L+     L+ +    L+    L VL     +++              L ++D+S N  
Sbjct: 58  TQLN-----LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 806 SGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILT 865
           +              +   K ++   +   +      L            L   L   L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 866 IFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNF 901
              ++ +  N     IP+       L    +  N +
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 40/199 (20%), Positives = 60/199 (30%), Gaps = 7/199 (3%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
            +      +T  P  L    +   L LS N +              +L  LNL       
Sbjct: 14  EVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPY--TRLTQLNLDRAE-LT 68

Query: 591 FEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAV 650
             +    L       L  +             ++  LD S N+ T+ +P      +    
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQ 127

Query: 651 FFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGT 710
              L  N L    P  L     L+ L L++N+LT      L     L  L L+ N    T
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186

Query: 711 VPQVIGNECSLRTLDLSQN 729
           +P+       L    L  N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 39/211 (18%), Positives = 70/211 (33%), Gaps = 7/211 (3%)

Query: 231 SLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGRVPEKIFLMPSLCFLD 290
            +SK+     +N D  +L++ +P  L        LHLS   LY      +     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 291 VSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPS 350
           +         +    P      +  ++ +    L  ++  L     L++S          
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLG 118

Query: 351 SFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLD 410
           +   L EL  +    N      P   +    +      N+    +P    + L +L  L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 411 LRNNSLQGIIPKSLYTKQSIESLLLGQNKFH 441
           L+ NSL   IPK  +    +    L  N + 
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 8/210 (3%)

Query: 547 RNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVL 606
               +   ++     +   +P             L+LS N+L  F      +  T L  L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLPK----DTTILHLSENLLYTFS-LATLMPYTRLTQL 60

Query: 607 DLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLS 666
           +L    L          ++      +         +G  +       ++ N L+     +
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLD-LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 667 LCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDL 726
           L    +LQ L L  N L    P  L  +  L+ L L NN        ++    +L TL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 727 SQNHLAGSLPKSLSKCTSLEVLDVGKNQLN 756
            +N L  ++PK       L    +  N   
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 3/183 (1%)

Query: 209 SILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
            +  +  IL L +  +     ++L     LT LNLD           +     +      
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA---ELTKLQVDGTLPVLGTLDL 84

Query: 269 LCGLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSI 328
                  +P     +P+L  LDVS N   +  L       +L+ + L         P  +
Sbjct: 85  SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144

Query: 329 NNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAH 388
                LE L L++ N           L  L  +    N+       F  S+ +       
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

Query: 389 NSF 391
           N +
Sbjct: 205 NPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 28/182 (15%), Positives = 44/182 (24%), Gaps = 8/182 (4%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNK 464
              +L L  N L      +L     +  L L + +              +L         
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSN 524
           L  L                 ++     + L   + L +L  L L  N       G  + 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTS-----LPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 525 MFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLS 584
                     ++         L    NL  L L  N +   IP   +      L    L 
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG--SHLLPFAFLH 203

Query: 585 HN 586
            N
Sbjct: 204 GN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 39/217 (17%), Positives = 62/217 (28%), Gaps = 28/217 (12%)

Query: 622 ASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDN 681
           AS + ++  +   T  +P ++           L+ N L      +L     L  L+L   
Sbjct: 10  ASHLEVNCDKRNLTA-LPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 682 HLTGSIPSCLVSSNILKVLKLRNNE---------------------FLGTVPQVIGNECS 720
            LT       +       L     +                             +     
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 721 LRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYD 780
           L+ L L  N L    P  L+    LE L +  N L       L  L  L  L+LQ N+  
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL- 184

Query: 781 GSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW 817
                 +      LL    +  N +  N    +F+ W
Sbjct: 185 --YTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 18/203 (8%)

Query: 105 DLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLS 164
            +     +N    +L +   P    +    T L+LS +         +     L  L+L 
Sbjct: 8   KVASHLEVNCDKRNLTA--LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 165 ASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRILSLPDCHV 224
            + L          +   +    N  +          A     +S      +       +
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 225 AGPIH-------------SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLCG 271
                               L+    L  L+L  N+L+      L    +L  L L    
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 272 LYGRVPEKIFLMPSLCFLDVSSN 294
           LY  +P+  F    L F  +  N
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 24/181 (13%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
               +  S+N L      ++     L  L L   + +          L  L        +
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEF--------------------PNFLRNQTNLF 553
                    +     +   +L+S  +                       P  L     L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 554 HLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            L L+NN +          + +  L  L L  N L    K         L    LH N  
Sbjct: 152 KLSLANNNLTELPAGLLNGLEN--LDTLLLQENSLYTIPKGFFGSHL--LPFAFLHGNPW 207

Query: 614 Q 614
            
Sbjct: 208 L 208

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 4e-08
 Identities = 27/231 (11%), Positives = 57/231 (24%), Gaps = 5/231 (2%)

Query: 719 CSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNN 778
           CS R     ++ +   +P  L    +   L     +L             L  + +  N+
Sbjct: 8   CSNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 64

Query: 779 YDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKF--V 836
               I+    +N   L +I    +NN     P  +             +    +     +
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 837 YLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNM 896
           +     L        ++         +      + ++ N  +              +   
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 897 SNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN 947
            NNN +               LD+S  ++       L  L  L        
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 27/223 (12%), Positives = 61/223 (27%), Gaps = 5/223 (2%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEA 590
                  K+TE P+ L    N   L     +++          GD + + ++ +  +   
Sbjct: 12  VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 591 FEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENK---FTTNIPYNIGNYIN 647
                 NL       ++  +N+L  +               +          + I +   
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 648 YAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEF 707
             +      N  +      +  +F+  +L L+ N +          + + ++    NN  
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 708 LGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV 750
                 V         LD+S+  +       L     L     
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 51/343 (14%), Positives = 102/343 (29%), Gaps = 30/343 (8%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNK 464
               L+L N  L  + P+       +ESL+   N     L +       SL+ +    N 
Sbjct: 39  QAHELELNNLGLSSL-PELP---PHLESLVASCN----SLTELPELPQ-SLKSLLVDNNN 89

Query: 465 LQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSN 524
           L+     ++  +  L      SN        E   +L+    L++ + + +      +  
Sbjct: 90  LK-----ALSDLPPLLEYLGVSNNQL-----EKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 525 MFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLS 584
              +      +  +       L   T ++  + S  ++     +    V    ++     
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 585 HNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGN 644
              L        +            S             +  L    +    ++  NI +
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQ--SLTFLDVSENIFS 257

Query: 645 YINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN 704
            ++         N  S  I         L+ L++S+N L   +P+       L+ L    
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASF 313

Query: 705 NEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEV 747
           N  L  VP++  N   L+ L +  N L    P        L +
Sbjct: 314 NH-LAEVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 57/320 (17%), Positives = 102/320 (31%), Gaps = 22/320 (6%)

Query: 289 LDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSI 348
           L++++   L+ SLPE PP   L+ +  S    + +LP+   +L  L     +        
Sbjct: 43  LELNNL-GLS-SLPELPP--HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 349 PS-SFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQ 407
           P   +  ++            S  L      N  +            I           +
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 408 VLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQG 467
           + +L   +       SL     +   L      +  LE+     +L      ++ N L  
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 468 LVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLG-------TLELSENNFSFNVSG 520
            +P+    ++ LNV                F D+ +            L   N S N   
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 521 SNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVH 580
           S  ++ P +  L +S+ K+ E P        L  L  S N +  E+P    N     L  
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLA-EVPELPQN-----LKQ 328

Query: 581 LNLSHNMLEAFEKPGPNLTS 600
           L++ +N L  F     ++  
Sbjct: 329 LHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 7e-06
 Identities = 53/313 (16%), Positives = 87/313 (27%), Gaps = 23/313 (7%)

Query: 654 LASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQ 713
           L +  LS  +P    +   L+ L  S N LT  +P    S   L V            P 
Sbjct: 45  LNNLGLSS-LPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 99

Query: 714 VIGNECSLRT---------LDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLE 764
           +     S                +     +            +  +            L+
Sbjct: 100 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQ 159

Query: 765 TLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRT 824
            LP L  +   +N+         +  +      I                 +   + K  
Sbjct: 160 NLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 219

Query: 825 KESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEM 884
            +   S     V         +   +L    +S  +   L+         N    EI  +
Sbjct: 220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 279

Query: 885 LGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKL 944
                +L  LN+SNN    ++PA    L+    L  S N L+ ++PE       L  L +
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQN---LKQLHV 331

Query: 945 SQNLLVGEIPRGP 957
             N L  E P  P
Sbjct: 332 EYNPLR-EFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 864 LTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHN 923
                 ++VSNN+   E+P +      L  L  S N+   ++P    NLK+L    + +N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLKQL---HVEYN 334

Query: 924 QLSGKIPEKLATLNFLSV 941
            L  + P+   ++  L +
Sbjct: 335 PLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 21/324 (6%)

Query: 334 LEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAH----- 388
             +LEL++     S+P    +L  L     S N+ +  LP    S K + +   +     
Sbjct: 40  AHELELNNLGL-SSLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALS 94

Query: 389 --NSFTGTIPLSYGDQLISLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEK 446
                   + +S        ++ +     +  +   SL     +   L      + QLE+
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 447 FQNASSLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGT 506
                +L      ++ N     +P+    ++ +        +      L     +     
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 507 LELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEI 566
           L  +  +   ++   N          +L         +                      
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 567 PNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIF 626
              +       L  LN+S+N L       P L       L    N L    P  P ++  
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPALPPRLE-----RLIASFNHLA-EVPELPQNLKQ 328

Query: 627 LDYSENKFTT--NIPYNIGN-YIN 647
           L    N      +IP ++ +  +N
Sbjct: 329 LHVEYNPLREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 47/303 (15%), Positives = 85/303 (28%), Gaps = 19/303 (6%)

Query: 665 LSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTL 724
           L  C       L+L++  L+ S+P        L+ L    N  L  +P++  +  SL   
Sbjct: 32  LRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNS-LTELPELPQSLKSLLVD 86

Query: 725 DLSQNHLAGSLPKSLSKCTSLEV---------LDVGKNQLNGSFPFWLETLPQLRVLVLQ 775
           + +   L+   P       S                K     +            +  + 
Sbjct: 87  NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 776 SNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKF 835
           + N             F      D +S     +LP        G     +  +   +   
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 836 VYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLN 895
             +   N   +    L     ++ +             +  F      +      L    
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 896 MSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPR 955
              N    +I +       L  L++S+N+L  ++P   A    L  L  S N L  E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHL-AEVPE 321

Query: 956 GPQ 958
            PQ
Sbjct: 322 LPQ 324

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 45/316 (14%), Positives = 90/316 (28%), Gaps = 25/316 (7%)

Query: 502 RQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNR 561
           RQ   LEL+    S     S   + P + +L  S   +TE P   ++  +L   + +   
Sbjct: 38  RQAHELELNNLGLS-----SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92

Query: 562 IKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKP---GPNLTSTVLAVLDLHSNMLQGSFP 618
           +    P   +       +            +       +L         L       +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 619 IPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIP-------LSLCNAF 671
                +  L +    +  N        +  ++   +A NN+   +P       L+   A 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHL 731
           +  +  L D   +    +   +         ++  FL     +      L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 732 AGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANA 791
           +  +        SLE L+V  N+L    P      P+L  L+   N+        +    
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHL------AEVPEL 322

Query: 792 FALLQIIDISSNNFSG 807
              L+ + +  N    
Sbjct: 323 PQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 45/325 (13%), Positives = 82/325 (25%), Gaps = 28/325 (8%)

Query: 454 SLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENN 513
              E++ +   L  L PE       L  L  S N  +     E+ +  + L +L +  NN
Sbjct: 39  QAHELELNNLGLSSL-PELPPH---LESLVASCNSLT-----ELPELPQSLKSLLVDNNN 89

Query: 514 FSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNV 573
                       +  +     +  +             +   + S  ++    P+  +  
Sbjct: 90  LKALSDLPPLLEYLGVS---NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 574 GDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENK 633
                +        L        +  S           +      +           E  
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNS--------LKKLPDLPLSLESIVAGNNILEELP 198

Query: 634 FTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVS 693
              N+P+    Y +  +  +L     S        N                   +    
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 694 SNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKN 753
            + L       N     +  +     SL  L++S N L   LP        LE L    N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFN 314

Query: 754 QLNGSFPFWLETLPQLRVLVLQSNN 778
            L    P   E    L+ L ++ N 
Sbjct: 315 HLA-EVP---ELPQNLKQLHVEYNP 335

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 653 SLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVP 712
            LA  +L+  +   L     +  LDLS N L    P+    + +  +  L+ ++      
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQASDNALENV 58

Query: 713 QVIGNECSLRTLDLSQNHLAG-SLPKSLSKCTSLEVLDVGKNQL---NGSFPFWLETLPQ 768
             + N   L+ L L  N L   +  + L  C  L +L++  N L    G      E LP 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 769 LRVLV 773
           +  ++
Sbjct: 119 VSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 8/128 (6%)

Query: 407 QVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQ 466
           +VL L +  L  +    L     +  L L  N+             L + +   +  +  
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-- 56

Query: 467 GLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSF--NVSGSNSN 524
               + +  +  L  L L +N+      ++      +L  L L  N+      +    + 
Sbjct: 57  --NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 525 MFPKIGTL 532
           M P + ++
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 311 KVIELSETRFSGKLPDSINNLALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSG 370
           +V+ L+    +      +  L L+  L+LS  N   ++P +   L  L  +  S N    
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLS-HNRLRALPPALAALRCLEVLQASDNALE- 56

Query: 371 SLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRNNSL---QGIIPKSLYTK 427
           ++   A+  ++  L   +N    +  +        L +L+L+ NSL   +GI  +     
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 428 QSIESLL 434
            S+ S+L
Sbjct: 117 PSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 20/116 (17%)

Query: 531 TLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTW------------------- 571
            L L+   +T   + L     + HLDLS+NR++   P                       
Sbjct: 2   VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 572 NVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFL 627
                +L  L L +N L+      P ++   L +L+L  N L     I       L
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 581 LNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPY 640
           L+L+H  L         L    +  LDL  N L+   P   A++  L+  +         
Sbjct: 3   LHLAHKDLTVLCHLE-QLLL--VTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENV 58

Query: 641 NIGNYINYAVFFSLASNNLSGGIPL-SLCNAFDLQVLDLSDNHLTG 685
           +    +       L +N L     +  L +   L +L+L  N L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 22/223 (9%)

Query: 724 LDLSQNHLAGSLPKS-LSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGS 782
           +   ++++  ++ ++ L   T+L     G   + G     ++ L  L  L L+ N     
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDNQITDL 78

Query: 783 IKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSN 842
                      L    +   N  +               + T  +  + +     L L  
Sbjct: 79  APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138

Query: 843 LYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFK 902
               +   L                    +S    +      L +   L  L   +N   
Sbjct: 139 NQITNISPLAGLTNLQY------------LSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 903 GQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLS 945
              P  L +L  L  + L +NQ+S   P  LA  + L ++ L+
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 22/217 (10%)

Query: 211 LSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLSLC 270
           L+N   ++    +V   +  + + L  +T L+  G  +++   + +   ++L  L L   
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 271 GLYGRVPEKIFLMPSLCFLDVSSNSNLTGSLPEFPPSSQLKVIELSETRFSGKLPDSINN 330
            +    P K     +   L  +   N++         +                  ++  
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 331 L--------------ALLEDLELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFA 376
           L               L     LS  N   S  +   NL++L  +    N  S  +   A
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLA 192

Query: 377 SSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
           S   +I +   +N  +   PL+      +L ++ L N
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 23/224 (10%)

Query: 496 EMFKD--LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLF 553
            +F D  L     +   ++N +  V+ ++      I TL      +T     ++   NL 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTTIEG-VQYLNNLI 66

Query: 554 HLDLSNNRIKGEIPN--------WTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAV 605
            L+L +N+I    P            +    K V        ++  +     +T      
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 606 LDLHSNMLQGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSL-----ASNNLS 660
              +  +L                +  ++ +     + +    A    L       N +S
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 661 GGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRN 704
              PL+      L  + L +N ++   P  L +++ L ++ L N
Sbjct: 187 DISPLASLPN--LIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 22/232 (9%)

Query: 354 NLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPLSYGDQLISLQVLDLRN 413
            L   I I   ++N + ++ + A  + + +L       T    + Y   L +L  L+L++
Sbjct: 17  ALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIEGVQY---LNNLIGLELKD 72

Query: 414 NSLQGIIPKSLYTKQSIESLLLGQNKFHGQLEKFQNASSLSLREMDFSQNKLQGLVPESI 473
           N +  + P    TK +   L     K    +   Q+  +L L     +            
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--------- 123

Query: 474 FQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGSNSNMFPKIGTLK 533
                L  L      +     +     L  L  L+      +     +      K+ TLK
Sbjct: 124 ----PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 534 LSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSH 585
               KI++      +  NL  + L NN+I    P    +     L  + L++
Sbjct: 180 ADDNKISDISPL-ASLPNLIEVHLKNNQISDVSPLANTS----NLFIVTLTN 226

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 32/152 (21%), Positives = 52/152 (34%), Gaps = 11/152 (7%)

Query: 125 PSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVK 184
                + +  +   L   G       ++ +  + V L+  +           A L  + +
Sbjct: 13  KLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRS--------SMAATLRIIEE 62

Query: 185 NLTNLEELYLGGIDISGADWGP-ILSILSNLRILSLPDCHVAGPIHSSLSKLQLLTHLNL 243
           N+  L  L L    +   D    I+    NL+IL+L    +         K   L  L L
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 244 DGNDLSSEVPDFLTNFSSLQYLHLSLCGLYGR 275
           DGN LS    D  T  S+++     L  L G 
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 4/122 (3%)

Query: 506 TLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGE 565
              L       +      N+      L   S           N   L  L+LSNNR+   
Sbjct: 24  QQALDLKGLRSDPDLVAQNIDV---VLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 566 IPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASII 625
               +       L  LNLS N L++  +        +   L L  N L  +F      I 
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE-ELWLDGNSLSDTFRDQSTYIS 139

Query: 626 FL 627
            +
Sbjct: 140 AI 141

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 29/184 (15%), Positives = 51/184 (27%), Gaps = 7/184 (3%)

Query: 452 SLSLREMDFSQNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSE 511
                 +D +   L+  +P  I        L L+ N+     +  +F  L  L  LEL  
Sbjct: 7   HCEGTTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR 63

Query: 512 NNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTW 571
           N  +     +              +               L  L+L +N+I   +P    
Sbjct: 64  NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123

Query: 572 NVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNMLQGSFPIPPASIIFLDYSE 631
           +     L  LNL+ N                     L+    +   P     +   D   
Sbjct: 124 H--LNSLTSLNLASNPFNCNCHLAWFAEWLRK--KSLNGGAARCGAPSKVRDVQIKDLPH 179

Query: 632 NKFT 635
           ++F 
Sbjct: 180 SEFK 183

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 11/178 (6%)

Query: 97  INGSSSLFDLQRLQHLNLADNSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLK 156
           +  + +  +L  +  +   ++ + S     G   L ++T L L+ +  +   PL      
Sbjct: 36  VTDAVTQNELNSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNL 92

Query: 157 MLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDISGADWGPILSILSNLRI 216
             + LD +    ++ ++  +      +++    +   L  +    + +     I     +
Sbjct: 93  GWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVL 152

Query: 217 LSLPDCHVAGPIH------SSLSKLQLLTHLNLDGNDLSSEVPDFLTNFSSLQYLHLS 268
             L                  L+ L  L +L L  N +S      L    +L  L L 
Sbjct: 153 SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 19/211 (9%)

Query: 496 EMFKD--LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLF 553
           ++F D    +     L + + +  V+ +       I  +  ++  I      ++   N+ 
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIKSVQG-IQYLPNVT 71

Query: 554 HLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            L L+ N++    P           +  N   ++    +                  ++ 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK-----------SLSLE 120

Query: 614 QGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDL 673
                     +            N   +I          +L+  +      + L     L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180

Query: 674 QVLDLSDNHLTGSIPSCLVSSNILKVLKLRN 704
           Q L LS NH++  + +     N L VL+L +
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKN-LDVLELFS 209

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 6/147 (4%)

Query: 284 PSLCFLDVS-----SNSNLTGSLPEFPPSSQLKVIELSETRFSGKLP-DSINNLALLEDL 337
           P  C    S     +      SL   P +  L  + +   +    L    +  L  L +L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 338 ELSDCNFFGSIPSSFGNLTELINIDFSRNNFSGSLPSFASSNKVISLKFAHNSFTGTIPL 397
            +         P +F     L  ++ S N              +  L  + N    +  L
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 398 SYGDQLISLQVLDLRNNSLQGIIPKSL 424
            +  +     +  +    LQ      L
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 41/314 (13%), Positives = 82/314 (26%), Gaps = 19/314 (6%)

Query: 405 SLQVLDLRNNSLQGIIPKSLYTKQSIESLLLGQNKFHGQ-LEKFQNA--SSLSLREMDFS 461
           SL++  +     + +    L    S++ ++L  N    +          S   L   +FS
Sbjct: 9   SLKLDAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 462 QNKLQGLVPESIFQIKGLNVLRLSSNKFSGFITLEMFKDLRQLGTLELSENNFSFNVSGS 521
                 +  E    ++ L    L   K       +          L    +  +      
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 522 --NSNMFPKIGTLKLSSCKITEFPNFLRNQTNLFHLDLSNNRIKGEIPNWTWNVGDGKLV 579
             N+ + P+ G     + +        +N   L  +    NR++               +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 580 HLNLSHNMLEAFEKPGPNLTSTVLA-VLDLHSNMLQGSFPIPPASIIFLDYSENKFTTNI 638
              +         +   +L    LA   +L    LQ +      S       ++      
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 639 PYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNI-- 696
                  ++     ++           S      LQ L L  N +       L +     
Sbjct: 248 LGLNDCLLSARGAAAVVDA-------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 697 ---LKVLKLRNNEF 707
              L  L+L  N F
Sbjct: 301 MPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 8e-04
 Identities = 38/315 (12%), Positives = 94/315 (29%), Gaps = 33/315 (10%)

Query: 671 FDLQVLDLSDNHLTG----SIPSCLVSSNILKVLKLRNN----EFLGTVPQVIGNECSLR 722
           F ++   L  + +T     S+ + L+  + +K + L  N    E    + + I ++  L 
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 723 TLDLSQNHLA----------GSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL 772
             + S                 L ++L KC  L  + +  N    +    L         
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI 832
           +     ++  +     A     LQ + ++    +             ++  + +      
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 833 LKFVYLELSNL----YYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDF 888
                L    +       + +  +         ++  +    +   +     +   L  +
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 889 DALLVLNMSNNNFKGQIPATLGN------LKELGSLDLSHNQLSGKIPEKLAT-----LN 937
             L  L +++     +  A + +         L +L L +N++       L T     + 
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 938 FLSVLKLSQNLLVGE 952
            L  L+L+ N    E
Sbjct: 303 DLLFLELNGNRFSEE 317

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 17/192 (8%)

Query: 496 EMFKD--LRQLGTLELSENNFSFNVSGSNSNMFPKIGTLKLSSCKITEFPNFLRNQTNLF 553
           ++F D  L +     L + N +  VS ++     ++ TL+     I      +    NL 
Sbjct: 10  QIFTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKSIDG-VEYLNNLT 65

Query: 554 HLDLSNNRIKGEIPNWTWNVGDGKLVHLNLSHNMLEAFEKPGPNLTSTVLAVLDLHSNML 613
            ++ SNN++    P          L++ N   ++                    L     
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT---------GLTLFNN 116

Query: 614 QGSFPIPPASIIFLDYSENKFTTNIPYNIGNYINYAVFFSLASNNLSGGIPLSLCNAFDL 673
           Q +   P  ++  L+  E    T    +  + +      + +SN ++   PL+      L
Sbjct: 117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTT--L 174

Query: 674 QVLDLSDNHLTG 685
           + LD+S N ++ 
Sbjct: 175 ERLDISSNKVSD 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1055
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.97
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.93
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.91
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.81
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.6
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.46
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.99

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=302.65  Aligned_cols=128  Identities=37%  Similarity=0.543  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCEEEECCC--CCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             9988879999997704988999987653699989999865--210485199--992999985998654556898876478
Q 001554           31 RCLEDQKLLLLEFKRGLSFDPQTDSTNKLLSWSSTTDCCS--WDGVTCDPR--TGHVIGLDISSSFITGGINGSSSLFDL  106 (1055)
Q Consensus        31 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~l~~W~~~~~~c~--w~gv~C~~~--~~~v~~L~L~~~~l~g~~~~~~~l~~l  106 (1055)
                      -|.++||+||++||+++.++ .     .+++|..++|||.  |+||+|+..  ++||++|+|+++++.|..+.+.+++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~-~-----~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L   75 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP-T-----TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL   75 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-G-----GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred             CCCHHHHHHHHHHHHHCCCC-C-----CCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHCC
T ss_conf             98989999999999977999-8-----67788999999889488969748999479889989899888888798478467


Q ss_pred             CCCCEEECCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEEECC
Q ss_conf             7788443899-9999999994577999999884899999888871000688986899047
Q 001554          107 QRLQHLNLAD-NSLYSSPFPSGFDRLFSLTHLNLSYSGFSGHIPLEISSLKMLVSLDLSA  165 (1055)
Q Consensus       107 ~~L~~L~Ls~-n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  165 (1055)
                      ++|++|+|++ |.+.+. +|..++++++|++|++++|.+.+..+..+..+.+|++++++.
T Consensus        76 ~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf             53352020265433300-243114542001102035643443322222011100111122

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=269.01  Aligned_cols=259  Identities=31%  Similarity=0.529  Sum_probs=179.1

Q ss_pred             EEEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             0389804886767--7660012889997896568-977898994313788666886658868644785557887745995
Q 001554          649 AVFFSLASNNLSG--GIPLSLCNAFDLQVLDLSD-NHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLD  725 (1055)
Q Consensus       649 l~~l~l~~n~l~g--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  725 (1055)
                      ++.++++++.++|  .+|..++++++|++|++++ |+++|.+|..+.++++|++|++++|++.+..+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf             88998989988888879847846753352020265433300243114542001102035643443322222011100111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             78983655696100079999699877981754547002599999679825873865469986436589886996568978
Q 001554          726 LSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNF  805 (1055)
Q Consensus       726 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l  805 (1055)
                      ++.|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+                         ++.++++.|++
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-------------------------~~~l~~~~n~l  186 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------------------------FTSMTISRNRL  186 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-------------------------CCEEECCSSEE
T ss_pred             CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCC-------------------------CCCCCCCCCCC
T ss_conf             12245555685122067400000023553356203121443112-------------------------32310224643


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             55789577751341001355410235665653412543200206774147246887630455299953784643676001
Q 001554          806 SGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEML  885 (1055)
Q Consensus       806 ~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l  885 (1055)
                      ++..|..+ .                                                ......++++++...|.+|..+
T Consensus       187 ~~~~~~~~-~------------------------------------------------~l~~~~l~l~~~~~~~~~~~~~  217 (313)
T d1ogqa_         187 TGKIPPTF-A------------------------------------------------NLNLAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             EEECCGGG-G------------------------------------------------GCCCSEEECCSSEEEECCGGGC
T ss_pred             CCCCCCCC-C------------------------------------------------CCCCCCCCCCCCCCCCCCCCCC
T ss_conf             53324332-2------------------------------------------------2222233333343322222222


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             49888978978787365446845338688885758887084347410329999994756799473369999976641234
Q 001554          886 GDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVGEIPRGPQFATFTAA  965 (1055)
Q Consensus       886 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~Lsg~iP~~~~~~~~~~~  965 (1055)
                      +.++.++.+++++|.+++.+| .++.++.|+.|||++|+++|.+|..+++++.|+.|||++|+|+|.||....+..+...
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
T ss_conf             222221112222222222222-2224554444447657066608768847999998979588351668986667998978


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q ss_conf             345688877999989888
Q 001554          966 SFEGNAGLCGFPLPKACQ  983 (1055)
Q Consensus       966 ~~~gn~~lcg~~~~~~c~  983 (1055)
                      .+.||+.+||.|++ .|.
T Consensus       297 ~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         297 AYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             GTCSSSEEESTTSS-CCC
T ss_pred             HHCCCCCCCCCCCC-CCC
T ss_conf             86889500198988-989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.8e-38  Score=213.12  Aligned_cols=207  Identities=28%  Similarity=0.374  Sum_probs=130.7

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             97896568977898994313788666886658868644785557887745995789836556961000799996998779
Q 001554          673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGK  752 (1055)
Q Consensus       673 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  752 (1055)
                      ........|...  ....+..++.++.+++++|.+++..|  +...++|+.|++++|.++. + ..+..+++|+.+++++
T Consensus       177 ~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~  250 (384)
T d2omza2         177 LERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLAN  250 (384)
T ss_dssp             CCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCS
T ss_pred             CCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCC-C-CHHHCCCCCCHHCCCC
T ss_conf             110112224333--21100223532333035774478786--4445778788887777789-6-1343256534100446


Q ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             81754547002599999679825873865469986436589886996568978557895777513410013554102356
Q 001554          753 NQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQI  832 (1055)
Q Consensus       753 N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~  832 (1055)
                      |.+++..+  +..+++|+.|++++|++.+..+    +..++.++.++++.|.+.+...                      
T Consensus       251 n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~----~~~~~~l~~l~~~~n~l~~~~~----------------------  302 (384)
T d2omza2         251 NQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISP----------------------  302 (384)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGG----------------------
T ss_pred             CCCCCCCC--CCCCCCCCEEECCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC----------------------
T ss_conf             74478775--3554668775456744578773----2356522223323233333221----------------------


Q ss_pred             HHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             65653412543200206774147246887630455299953784643676001498889789787873654468453386
Q 001554          833 LKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNL  912 (1055)
Q Consensus       833 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l  912 (1055)
                                                  ...++.++.+++++|++++..+  +..+++|+.|++++|++++ +| .++++
T Consensus       303 ----------------------------~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l  350 (384)
T d2omza2         303 ----------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANL  350 (384)
T ss_dssp             ----------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGC
T ss_pred             ----------------------------CCHHCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCC-CH-HHCCC
T ss_conf             ----------------------------0000246767777887789845--3668988989898998999-74-67089


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             88885758887084347410329999994756799
Q 001554          913 KELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQN  947 (1055)
Q Consensus       913 ~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N  947 (1055)
                      ++|+.||+++|++++.+|  +.+++.|+.|++++|
T Consensus       351 ~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCCCCCCCHH--HCCCCCCCEEECCCC
T ss_conf             999989897995899800--003999999639789

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=4.3e-37  Score=205.98  Aligned_cols=189  Identities=25%  Similarity=0.350  Sum_probs=87.5

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             88999789656897789899431378866688665886864478555788774599578983655696100079999699
Q 001554          669 NAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVL  748 (1055)
Q Consensus       669 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  748 (1055)
                      .+++++.+++++|.+++..|  +..++.|+.|++++|.+...  ..+..+++|+.+++++|.+++..+  +..+++|+.|
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L  268 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL  268 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCC--CHHHCCCCCCHHCCCCCCCCCCCC--CCCCCCCCEE
T ss_conf             23532333035774478786--44457787888877777896--134325653410044674478775--3554668775


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf             87798175454700259999967982587386546998643658988699656897855789577751341001355410
Q 001554          749 DVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQ  828 (1055)
Q Consensus       749 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~  828 (1055)
                      ++++|++.+..+  +..++.++.+.+..|.+.+..    .+..++.++.+++++|++.+..+.                 
T Consensus       269 ~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~----~~~~~~~l~~L~ls~n~l~~l~~l-----------------  325 (384)
T d2omza2         269 KLGANQISNISP--LAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDISPV-----------------  325 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCCGGG-----------------
T ss_pred             ECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC----CCCHHCCCCEEECCCCCCCCCCCC-----------------
T ss_conf             456744578773--235652222332323333322----100002467677778877898453-----------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             23566565341254320020677414724688763045529995378464367600149888978978787365446845
Q 001554          829 ESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPAT  908 (1055)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~  908 (1055)
                                                       ..++.++.|++++|++++ ++ .++++++|+.|++++|++++.+|  
T Consensus       326 ---------------------------------~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         326 ---------------------------------SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             ---------------------------------GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             ---------------------------------CCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCHH--
T ss_conf             ---------------------------------668988989898998999-74-67089999989897995899800--


Q ss_pred             CCCCCCCCEEECCCC
Q ss_conf             338688885758887
Q 001554          909 LGNLKELGSLDLSHN  923 (1055)
Q Consensus       909 l~~l~~L~~LdLs~N  923 (1055)
                      +.++++|+.|+|++|
T Consensus       369 l~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GTTCTTCSEEECCCE
T ss_pred             HCCCCCCCEEECCCC
T ss_conf             003999999639789

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-33  Score=186.26  Aligned_cols=227  Identities=19%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             01288999789656897789899431378866688665886864478555788774599578983655696100079999
Q 001554          666 SLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSL  745 (1055)
Q Consensus       666 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  745 (1055)
                      ++.++++|+.|++++|.+....|..|.+++.|+.|++++|+++.. |..+  ...++.|++.+|.+.+..+..+.....+
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCCCC-CCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCC
T ss_conf             760465652311234434452356652798557831568756767-6400--1113232102461023444454013311


Q ss_pred             CEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf             69987798175--4547002599999679825873865469986436589886996568978557895777513410013
Q 001554          746 EVLDVGKNQLN--GSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKR  823 (1055)
Q Consensus       746 ~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~  823 (1055)
                      ..++...|...  ...+..+..+++|+.+++++|.+.. ++.    ..+++|+.+++++|...+..+...          
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~----~~~~~L~~L~l~~n~~~~~~~~~~----------  191 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ----GLPPSLTELHLDGNKITKVDAASL----------  191 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS----SCCTTCSEEECTTSCCCEECTGGG----------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC----CCCCCCCEEECCCCCCCCCCHHHH----------
T ss_conf             00001233333467776422345656712034677451-671----017766789897886778882676----------


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             55410235665653412543200206774147246887630455299953784643676001498889789787873654
Q 001554          824 TKESQESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKG  903 (1055)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  903 (1055)
                                                            ..++.++.|++++|.+++..+..+..+++|+.|+|++|+|+ 
T Consensus       192 --------------------------------------~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-  232 (305)
T d1xkua_         192 --------------------------------------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  232 (305)
T ss_dssp             --------------------------------------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             --------------------------------------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-
T ss_conf             --------------------------------------41341330154455332223454334433224302554002-


Q ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCC------CCCCCCCCEEECCCCCC
Q ss_conf             46845338688885758887084347410------32999999475679947
Q 001554          904 QIPATLGNLKELGSLDLSHNQLSGKIPEK------LATLNFLSVLKLSQNLL  949 (1055)
Q Consensus       904 ~ip~~l~~l~~L~~LdLs~N~lsg~ip~~------l~~l~~L~~l~ls~N~L  949 (1055)
                      .+|..|+++++|+.|+|++|+|+......      +..+..|+.+++++|.+
T Consensus       233 ~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         233 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCCCEEECCCCCC
T ss_conf             4631103346789898989865763810026721002158889788989957

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-32  Score=182.93  Aligned_cols=224  Identities=25%  Similarity=0.318  Sum_probs=118.5

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             99789656897789899431378866688665886864478555788774599578983655696100079999699877
Q 001554          672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  751 (1055)
                      +++.|++++|+++...+..|.+++.|+.|++++|.+....|..|.+++.|+.|++++|+++ .+|..+  ...++.|++.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~  108 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVH  108 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECC
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEECCCCCCCC-CCCCCH--HHHHHHHHCC
T ss_conf             9798978499189869657604656523112344344523566527985578315687567-676400--1113232102


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             98175454700259999967982587386546998643658988699656897855789577751341001355410235
Q 001554          752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQ  831 (1055)
Q Consensus       752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~  831 (1055)
                      +|.+.+..+..+.....+..+....|...........+..++.|+.+++++|.+.. +|..                   
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~-------------------  168 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG-------------------  168 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS-------------------
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC-------------------
T ss_conf             46102344445401331100001233333467776422345656712034677451-6710-------------------


Q ss_pred             HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             66565341254320020677414724688763045529995378464367600149888978978787365446845338
Q 001554          832 ILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGN  911 (1055)
Q Consensus       832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~  911 (1055)
                                                     ..+.++.+++++|..++.++..+..++.++.|++++|.+++..|..+.+
T Consensus       169 -------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         169 -------------------------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             -------------------------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             -------------------------------CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -------------------------------1776678989788677888267641341330154455332223454334


Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             688885758887084347410329999994756799473
Q 001554          912 LKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLV  950 (1055)
Q Consensus       912 l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~Ls  950 (1055)
                      +++|+.|+|++|+|+ .+|..+.+++.|+.|++++|+++
T Consensus       218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCC
T ss_conf             433224302554002-46311033467898989898657

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-34  Score=189.48  Aligned_cols=89  Identities=25%  Similarity=0.238  Sum_probs=47.2

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             45529995378464367600149888978978787365446845338688885758887084347410329999994756
Q 001554          865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKL  944 (1055)
Q Consensus       865 ~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~l  944 (1055)
                      +.++.|++++|++++..+..+..++.|+.+++++|++++..|..|+++++|+.||+++|.+++.+|..++.++.|+.+++
T Consensus       153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             CCHHHCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             40502231417656625666546563413142114346628167665320002333335221000002355465688981


Q ss_pred             CCCCCCCCC
Q ss_conf             799473369
Q 001554          945 SQNLLVGEI  953 (1055)
Q Consensus       945 s~N~Lsg~i  953 (1055)
                      ++|++.+..
T Consensus       233 ~~N~l~C~C  241 (284)
T d1ozna_         233 NDNPWVCDC  241 (284)
T ss_dssp             CSSCEECSG
T ss_pred             CCCCCCCCC
T ss_conf             199887875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-33  Score=184.13  Aligned_cols=158  Identities=20%  Similarity=0.229  Sum_probs=115.2

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             67677660012889997896568977898994313788666886658868644785557887745995789836556961
Q 001554          658 NLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPK  737 (1055)
Q Consensus       658 ~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  737 (1055)
                      .+....+..+.++++|+.|++++|.+....+..+.....|+.+++++|+++++.+..|..+++|+.|++++|++++..+.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCHH
T ss_conf             23544620101010277875688544320135332000121102001431445805740434050223141765662566


Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf             00079999699877981754547002599999679825873865469986436589886996568978557895777513
Q 001554          738 SLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW  817 (1055)
Q Consensus       738 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~  817 (1055)
                      +|.++++|+.+++++|++++..|.+|.++++|+.|++++|.+.+..+  ..+..++.|+.+++++|++.|.|+..|+..|
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~  249 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLNDNPWVCDCRARPLWAW  249 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH--HHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             HHCCCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf             65465634131421143466281676653200023333352210000--0235546568898119988787564699999

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-31  Score=173.92  Aligned_cols=201  Identities=23%  Similarity=0.257  Sum_probs=132.7

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             89997896568977898994313788666886658868644785557887745995789836556961000799996998
Q 001554          670 AFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD  749 (1055)
Q Consensus       670 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  749 (1055)
                      ..++.+++.+++.++ .+|..+.  +.++.|+|++|++++..+..|.++++|++|++++|+++. ++ .+..+++|+.|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred             CCCCEEEECCCCCCC-EECCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCCC
T ss_conf             689869980699988-6196757--688989884992898597786345655221356654444-31-111122321111


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf             77981754547002599999679825873865469986436589886996568978557895777513410013554102
Q 001554          750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQE  829 (1055)
Q Consensus       750 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~  829 (1055)
                      +++|++.. .+..+..+++|+.|++++|.+....+.  ...                                       
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~---------------------------------------  121 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLG--ALR---------------------------------------  121 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSS--TTT---------------------------------------
T ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECC--CCC---------------------------------------
T ss_conf             12222211-111212222222222222311011001--122---------------------------------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             35665653412543200206774147246887630455299953784643676001498889789787873654468453
Q 001554          830 SQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATL  909 (1055)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  909 (1055)
                                                       .+..+..+++++|.+++..+..+..++.++.+++++|++++..+..|
T Consensus       122 ---------------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~  168 (266)
T d1p9ag_         122 ---------------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL  168 (266)
T ss_dssp             ---------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTT
T ss_pred             ---------------------------------CCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf             ---------------------------------22111122124342102212333221110000000156522372001


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             386888857588870843474103299999947567994733
Q 001554          910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQNLLVG  951 (1055)
Q Consensus       910 ~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~N~Lsg  951 (1055)
                      +.+++|+.|||++|+|+ .+|..+..++.|+.+++++|.+..
T Consensus       169 ~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCC
T ss_conf             34212423430139785-568667778889999836999878

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.2e-30  Score=167.99  Aligned_cols=144  Identities=27%  Similarity=0.268  Sum_probs=82.2

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             89997896568977898994313788666886658868644785557887745995789836556961000799996998
Q 001554          670 AFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD  749 (1055)
Q Consensus       670 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  749 (1055)
                      +++|+.|++++|+++ ..+..+..++.|+.|++++|.+....+..+..+.+++.|++++|.++...+..+..++.++.++
T Consensus        76 l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHCC
T ss_conf             223211111222221-1111212222222222222311011001122221111221243421022123332211100000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf             77981754547002599999679825873865469986436589886996568978557895777513
Q 001554          750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW  817 (1055)
Q Consensus       750 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~  817 (1055)
                      +++|++++..+..+..+++|+.|+|++|+++ .+|..  +..++.|+.|++++|++.|+|...|+..|
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~--~~~~~~L~~L~L~~Np~~CdC~~~~l~~w  219 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG--FFGSHLLPFAFLHGNPWLCNCEILYFRRW  219 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT--TTTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHH--HCCCCCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf             0015652237200134212423430139785-56866--77788899998369998788643799999

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=1.3e-24  Score=140.87  Aligned_cols=13  Identities=46%  Similarity=0.521  Sum_probs=4.7

Q ss_pred             CCCEEECCCCCCC
Q ss_conf             8978978787365
Q 001554          890 ALLVLNMSNNNFK  902 (1055)
Q Consensus       890 ~L~~L~Ls~N~l~  902 (1055)
                      +|+.|+|++|+++
T Consensus       285 ~L~~L~Ls~N~l~  297 (353)
T d1jl5a_         285 SLEELNVSNNKLI  297 (353)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECCCCCCC
T ss_conf             8898979799168

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-29  Score=163.43  Aligned_cols=15  Identities=47%  Similarity=0.510  Sum_probs=5.5

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             688885758887084
Q 001554          912 LKELGSLDLSHNQLS  926 (1055)
Q Consensus       912 l~~L~~LdLs~N~ls  926 (1055)
                      .+.|++|||++|+++
T Consensus       396 ~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         396 NHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCCCCEEECCSSSCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             998898989999698

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.8e-29  Score=164.48  Aligned_cols=11  Identities=9%  Similarity=0.138  Sum_probs=4.0

Q ss_pred             CCEEECCCCCC
Q ss_conf             86996568978
Q 001554          795 LQIIDISSNNF  805 (1055)
Q Consensus       795 L~~Ldls~N~l  805 (1055)
                      |+.+++.+|.+
T Consensus       428 L~~l~l~~~~~  438 (460)
T d1z7xw1         428 LEQLVLYDIYW  438 (460)
T ss_dssp             CCEEECTTCCC
T ss_pred             CCEEECCCCCC
T ss_conf             67898989878

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=8.5e-25  Score=141.79  Aligned_cols=188  Identities=22%  Similarity=0.290  Sum_probs=107.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             78866688665886864478555788774599578983655696100079999699877981754547002599999679
Q 001554          693 SSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVL  772 (1055)
Q Consensus       693 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  772 (1055)
                      .+.+|+.|++.+|.+...  +.+..+++|++|++++|.+++..|  +..++.++.+++++|.++..  ..+.++++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HCCCCCEEECCCCCCCCC--HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC
T ss_conf             848868997779999766--457448888376357853202543--11233432012111222222--222222222122


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             82587386546998643658988699656897855789577751341001355410235665653412543200206774
Q 001554          773 VLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLM  852 (1055)
Q Consensus       773 ~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  852 (1055)
                      .++++...+..    .+...+.+..+.++.+.+....+.                                         
T Consensus       113 ~l~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~-----------------------------------------  147 (227)
T d1h6ua2         113 DLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISPL-----------------------------------------  147 (227)
T ss_dssp             ECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGGG-----------------------------------------
T ss_pred             CCCCCCCCCCC----HHCCCCCHHHHHCHHHHHCHHHHH-----------------------------------------
T ss_conf             12224433110----000023012220000000000000-----------------------------------------


Q ss_pred             ECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             14724688763045529995378464367600149888978978787365446845338688885758887084347410
Q 001554          853 NKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEK  932 (1055)
Q Consensus       853 ~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~  932 (1055)
                               ...+.++.+++++|.+++..+  ++++++|+.|||++|++++ +| .++++++|+.|+|++|++++..|  
T Consensus       148 ---------~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--  212 (227)
T d1h6ua2         148 ---------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP--  212 (227)
T ss_dssp             ---------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG--
T ss_pred             ---------CCCCCCCCCCCCCCCCCCCHH--HCCCCCCEECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCCCC--
T ss_conf             ---------102111002333333331001--0564633564458884177-85-34479999989795996899802--


Q ss_pred             CCCCCCCCEEECCC
Q ss_conf             32999999475679
Q 001554          933 LATLNFLSVLKLSQ  946 (1055)
Q Consensus       933 l~~l~~L~~l~ls~  946 (1055)
                      +++++.|+.+++++
T Consensus       213 l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEEEEE
T ss_pred             CCCCCCCCEEEEEC
T ss_conf             03699989897129

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.2e-25  Score=142.92  Aligned_cols=222  Identities=15%  Similarity=0.094  Sum_probs=146.6

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECC
Q ss_conf             978965689778989943137886668866588686447855578877459957898365569-6100079999699877
Q 001554          673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSL-PKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       673 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls  751 (1055)
                      .+.++.++..++ .+|..+.  .++++|++++|++....+..|.++++|++|++++|.+...+ +.+|.+++.++.+++.
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEECCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             999998189988-7688889--9889998769918964966861464323211022112420100112222222221111


Q ss_pred             -CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHH
Q ss_conf             -9817545470025999996798258738654699864365898869965689785578957775134100135541023
Q 001554          752 -KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQES  830 (1055)
Q Consensus       752 -~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~  830 (1055)
                       .|.+....+..+.++++|+.+++++|.+... +.......+..+..+..+++.+.. ++...+.               
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~~~l~~l~~~~~~n~~l~~-i~~~~~~---------------  149 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHT-IERNSFV---------------  149 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSC-CCCTTTCBSSCEEEEEESCTTCCE-ECTTSST---------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCC---------------
T ss_conf             12343222222122222222223421111255-433322211112222222121112-2222222---------------


Q ss_pred             HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCCCCCC
Q ss_conf             56656534125432002067741472468876304552999537846436760014988897-89787873654468453
Q 001554          831 QILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALL-VLNMSNNNFKGQIPATL  909 (1055)
Q Consensus       831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l  909 (1055)
                                                     .....+..+++++|+++...+.. .....+. .+++++|+++...+..|
T Consensus       150 -------------------------------~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~l~~l~~~~f  197 (242)
T d1xwdc1         150 -------------------------------GLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNNLEELPNDVF  197 (242)
T ss_dssp             -------------------------------TSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTTCCCCCTTTT
T ss_pred             -------------------------------CCCCCCEEEECCCCCCCCCCCCC-CCCHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             -------------------------------22331001220012333322222-2201110121235432464247886


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             3868888575888708434741032999999475679
Q 001554          910 GNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKLSQ  946 (1055)
Q Consensus       910 ~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~ls~  946 (1055)
                      .++++|+.|||++|+++...+..+.++..|+.+++.+
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC
T ss_conf             6899999898979928945977973771341476788

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1.5e-24  Score=140.52  Aligned_cols=140  Identities=24%  Similarity=0.356  Sum_probs=106.0

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             9789656897789899431378866688665886864-478555788774599578983655696100079999699877
Q 001554          673 LQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLG-TVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVG  751 (1055)
Q Consensus       673 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  751 (1055)
                      .+.++.++++++ .+|..+.  +.++.|+|++|+|++ ..+..|.++++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEECCCCC-CCCCCCC--CCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             999997089967-0298989--7878898489877553020025787627213013632212121222112222101003


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf             981754547002599999679825873865469986436589886996568978557895777513
Q 001554          752 KNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSW  817 (1055)
Q Consensus       752 ~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~  817 (1055)
                      +|++....+.+|.++++|++|+|++|++++..+.  .+..++.|+++++++|++.+.++..|+..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~--~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~  150 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG--SFEHLNSLTSLNLASNPFNCNCHLAWFAEW  150 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT--SSTTCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHH--HHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             5534434979980797465524577453535977--856875334200036443435302777642

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=2.3e-22  Score=129.10  Aligned_cols=186  Identities=24%  Similarity=0.332  Sum_probs=90.3

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             89997896568977898994313788666886658868644785557887745995789836556961000799996998
Q 001554          670 AFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD  749 (1055)
Q Consensus       670 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  749 (1055)
                      +.+|+.|++.+|.++ .++ .+..+++|+.|++++|++.+..|  +..++.++.+++++|.++ .++ .+..++.|+.++
T Consensus        40 l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCC-CCH-HHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCC
T ss_conf             488689977799997-664-57448888376357853202543--112334320121112222-222-222222221221


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHH
Q ss_conf             77981754547002599999679825873865469986436589886996568978557895777513410013554102
Q 001554          750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQE  829 (1055)
Q Consensus       750 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~  829 (1055)
                      ++++...+..+  +...+.++.+.++.+.+....    .+..++.|+.+++++|.+....+   +               
T Consensus       114 l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~---l---------------  169 (227)
T d1h6ua2         114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDLTP---L---------------  169 (227)
T ss_dssp             CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG---G---------------
T ss_pred             CCCCCCCCCCH--HCCCCCHHHHHCHHHHHCHHH----HHCCCCCCCCCCCCCCCCCCCHH---H---------------
T ss_conf             22244331100--000230122200000000000----00102111002333333331001---0---------------


Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             35665653412543200206774147246887630455299953784643676001498889789787873654468453
Q 001554          830 SQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATL  909 (1055)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  909 (1055)
                                                      ..++.++.||+++|++++ ++ .++.+++|+.|+|++|++++. | .+
T Consensus       170 --------------------------------~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l  213 (227)
T d1h6ua2         170 --------------------------------ANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PL  213 (227)
T ss_dssp             --------------------------------TTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GG
T ss_pred             --------------------------------CCCCCCEECCCCCCCCCC-CH-HHCCCCCCCEEECCCCCCCCC-C-CC
T ss_conf             --------------------------------564633564458884177-85-344799999897959968998-0-20


Q ss_pred             CCCCCCCEEECC
Q ss_conf             386888857588
Q 001554          910 GNLKELGSLDLS  921 (1055)
Q Consensus       910 ~~l~~L~~LdLs  921 (1055)
                      +++++|+.|+++
T Consensus       214 ~~l~~L~~L~ls  225 (227)
T d1h6ua2         214 ANTSNLFIVTLT  225 (227)
T ss_dssp             TTCTTCCEEEEE
T ss_pred             CCCCCCCEEEEE
T ss_conf             369998989712

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=1.9e-22  Score=129.52  Aligned_cols=76  Identities=29%  Similarity=0.381  Sum_probs=44.5

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             45529995378464367600149888978978787365446845338688885758887084347410329999994756
Q 001554          865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVLKL  944 (1055)
Q Consensus       865 ~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l~l  944 (1055)
                      +.++.+++++|.+++  +..+..+++|+.+++++|++++. + .++++++|+.|||++|+++. +| .++++++|+.|++
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEEC
T ss_conf             112221122233345--43100013321001346430256-4-53678989999897998998-72-1169999899971


Q ss_pred             CC
Q ss_conf             79
Q 001554          945 SQ  946 (1055)
Q Consensus       945 s~  946 (1055)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             CC
T ss_conf             18

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=1.2e-22  Score=130.57  Aligned_cols=163  Identities=20%  Similarity=0.234  Sum_probs=88.6

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             66688665886864478555788774599578983655696100079999699877981754547002599999679825
Q 001554          696 ILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDVGKNQLNGSFPFWLETLPQLRVLVLQ  775 (1055)
Q Consensus       696 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  775 (1055)
                      +++.|++++|.+....  .+..+++|++|++++|++++..  .+..+++|+.|++++|++++. + .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCCH--HHHHCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCC
T ss_conf             8458978279888744--4764899898769896025860--113586212014333332122-2-12122211122345


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf             87386546998643658988699656897855789577751341001355410235665653412543200206774147
Q 001554          776 SNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQDSVTLMNKG  855 (1055)
Q Consensus       776 ~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  855 (1055)
                      +|.+...    ..+..++.++.++++.|.+....+.                                            
T Consensus       121 ~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~~~~--------------------------------------------  152 (210)
T d1h6ta2         121 HNGISDI----NGLVHLPQLESLYLGNNKITDITVL--------------------------------------------  152 (210)
T ss_dssp             TSCCCCC----GGGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------
T ss_pred             CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC--------------------------------------------
T ss_conf             6532211----2201111122211222333454310--------------------------------------------


Q ss_pred             CHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf             2468876304552999537846436760014988897897878736544684533868888575888
Q 001554          856 LSMELAKILTIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSH  922 (1055)
Q Consensus       856 ~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~  922 (1055)
                            ..++.++.+++++|++++. + .++++++|+.|+|++|+++ .+| .+.++++|+.|+|++
T Consensus       153 ------~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 ------SRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------GGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             ------CCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCC-CCH-HHCCCCCCCEEECCC
T ss_conf             ------0013321001346430256-4-5367898999989799899-872-116999989997118

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.7e-22  Score=127.45  Aligned_cols=201  Identities=14%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             9978965689778989943137886668866588686447-8555788774599578-9836556961000799996998
Q 001554          672 DLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTV-PQVIGNECSLRTLDLS-QNHLAGSLPKSLSKCTSLEVLD  749 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~L~~L~  749 (1055)
                      +++.|++++|+++...+..|.++++|+.|++++|.+...+ +..|.+++.++++.+. .|.+....+..|.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECCCCCCCCCCHHHHHCCCHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88999876991896496686146432321102211242010011222222222111112343222222122222222223


Q ss_pred             CCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf             779817545470-0259999967982587386546998643658988699656897855789577751341001355410
Q 001554          750 VGKNQLNGSFPF-WLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQ  828 (1055)
Q Consensus       750 Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~  828 (1055)
                      +++|.+....+. .+..++.+..+...++.+....+ .........++.+++++|+++. ++...+              
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~-~~~~~~~~~l~~L~l~~n~l~~-i~~~~~--------------  173 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQE-IHNCAF--------------  173 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSCCCE-ECTTTT--------------
T ss_pred             CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCC-CCCCCC--------------
T ss_conf             421111255433322211112222222121112222-2222223310012200123333-222222--------------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCC-CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             23566565341254320020677414724688763045-52999537846436760014988897897878736544684
Q 001554          829 ESQILKFVYLELSNLYYQDSVTLMNKGLSMELAKILTI-FTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPA  907 (1055)
Q Consensus       829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  907 (1055)
                                                        .... .+.+++++|+++...+..+..+++|+.|||++|+++...+.
T Consensus       174 ----------------------------------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         174 ----------------------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             ----------------------------------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             ----------------------------------CCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf             ----------------------------------2011101212354324642478866899999898979928945977


Q ss_pred             CCCCCCCCCEEECCC
Q ss_conf             533868888575888
Q 001554          908 TLGNLKELGSLDLSH  922 (1055)
Q Consensus       908 ~l~~l~~L~~LdLs~  922 (1055)
                      .|.+++.|+.+++++
T Consensus       220 ~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         220 GLENLKKLRARSTYN  234 (242)
T ss_dssp             SCTTCCEEESSSEES
T ss_pred             HHCCCCCCCCCCCCC
T ss_conf             973771341476788

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=4.2e-23  Score=132.96  Aligned_cols=109  Identities=26%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             CCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             99789656897789-89943137886668866588686447855578877459957898365569610007999969987
Q 001554          672 DLQVLDLSDNHLTG-SIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLDV  750 (1055)
Q Consensus       672 ~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  750 (1055)
                      ++++|++++|++++ ..+..|.++++|+.|++++|.+....+..|..+++|++|++++|++++..+.+|.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCC
T ss_conf             87889848987755302002578762721301363221212122211222210100355344349799807974655245


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             798175454700259999967982587386
Q 001554          751 GKNQLNGSFPFWLETLPQLRVLVLQSNNYD  780 (1055)
Q Consensus       751 s~N~l~~~~p~~l~~l~~L~~L~L~~N~~~  780 (1055)
                      ++|+|++..+.+|..+++|++|+|++|++.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf             774535359778568753342000364434

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1e-21  Score=125.65  Aligned_cols=72  Identities=35%  Similarity=0.461  Sum_probs=40.4

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             455299953784643676001498889789787873654468453386888857588870843474103299999947
Q 001554          865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVL  942 (1055)
Q Consensus       865 ~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l  942 (1055)
                      +.++.+++++|++.. ++ .+..++.++.|++++|++++..  .++++++|+.|++++|+++. +| .+++++.|+.|
T Consensus       128 ~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             HHHHHHHHHHHHHCC-CC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             236776431111002-34-3332111111223455556770--11679989999787997998-81-01278998949

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-23  Score=135.10  Aligned_cols=60  Identities=15%  Similarity=0.201  Sum_probs=27.0

Q ss_pred             CCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             045529995378-46436760014988897897878-7365446845338688885758887
Q 001554          864 LTIFTSIDVSNN-QFEGEIPEMLGDFDALLVLNMSN-NNFKGQIPATLGNLKELGSLDLSHN  923 (1055)
Q Consensus       864 ~~~l~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N  923 (1055)
                      ++.++.||++++ .+++..+..+.+++.|+.|+|++ +.+++.....++++++|+.|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf             22212355322347783033332135768779899999787378999726999898964488

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=8.1e-21  Score=121.02  Aligned_cols=50  Identities=30%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             455299953784643676001498889789787873654468453386888857
Q 001554          865 TIFTSIDVSNNQFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSL  918 (1055)
Q Consensus       865 ~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L  918 (1055)
                      +.++.+++++|++++..  .++++++|+.|++++|++++ +| .++++++|+.|
T Consensus       150 ~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         150 TSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             CCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCC-CC-CCCCCCCCCCC
T ss_conf             11111223455556770--11679989999787997998-81-01278998949

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.2e-22  Score=125.95  Aligned_cols=58  Identities=21%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             CCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             888978978787-36544684533868888575888-70843474103299999947567
Q 001554          888 FDALLVLNMSNN-NFKGQIPATLGNLKELGSLDLSH-NQLSGKIPEKLATLNFLSVLKLS  945 (1055)
Q Consensus       888 l~~L~~L~Ls~N-~l~g~ip~~l~~l~~L~~LdLs~-N~lsg~ip~~l~~l~~L~~l~ls  945 (1055)
                      +++|+.|+++++ .+++..+..++++++|+.|+|++ +.+++.....+++++.|+.++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEE
T ss_conf             222123553223477830333321357687798999997873789997269998989644

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.81  E-value=3.4e-21  Score=122.98  Aligned_cols=239  Identities=15%  Similarity=0.184  Sum_probs=0.0

Q ss_pred             CCCEEEEECCCCCCCC----CCCCCCCCCCCCCEEECCCCCCCCC----------CCCCCCCCCCCCEEECCCCCCCCC-
Q ss_conf             4540389804886767----7660012889997896568977898----------994313788666886658868644-
Q 001554          646 INYAVFFSLASNNLSG----GIPLSLCNAFDLQVLDLSDNHLTGS----------IPSCLVSSNILKVLKLRNNEFLGT-  710 (1055)
Q Consensus       646 ~~~l~~l~l~~n~l~g----~~p~~l~~l~~L~~L~Ls~N~l~~~----------~p~~l~~l~~L~~L~Ls~N~l~~~-  710 (1055)
                      ...++.+++++|.+..    .+...+...++|+.++++++.....          +...+..++.|+.|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             89978897849837789999999999858998888887775433454210678799988754777563300001345543


Q ss_pred             ---CCCCCCCCCCCCEEECCCCCCCCCCCCCC-------------CCCCCCCEEECCCCCCC----CCCCCCCCCCCCCC
Q ss_conf             ---78555788774599578983655696100-------------07999969987798175----45470025999996
Q 001554          711 ---VPQVIGNECSLRTLDLSQNHLAGSLPKSL-------------SKCTSLEVLDVGKNQLN----GSFPFWLETLPQLR  770 (1055)
Q Consensus       711 ---~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-------------~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~  770 (1055)
                         +...+...++|+.|++++|.+...-...+             .....|+.+++++|++.    ..+...+..++.|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             CCCHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHC
T ss_conf             33101110023432100000246666543111121222211000146764211101365013554332211112333213


Q ss_pred             EEECCCCCCCC---CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             79825873865---469986436589886996568978557895777513410013554102356656534125432002
Q 001554          771 VLVLQSNNYDG---SIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRGMKKRTKESQESQILKFVYLELSNLYYQD  847 (1055)
Q Consensus       771 ~L~L~~N~~~~---~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  847 (1055)
                      .|++++|.+..   .......+..++.|+.|++++|+++..........++.                            
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~----------------------------  241 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS----------------------------  241 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG----------------------------
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC----------------------------
T ss_conf             3543332222222320024332110121122233332222222234443323----------------------------


Q ss_pred             CEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCCCCC------CCCCCCCEEECCCCCCCCCCCCCCC-----CCCCCC
Q ss_conf             06774147246887630455299953784643676001------4988897897878736544684533-----868888
Q 001554          848 SVTLMNKGLSMELAKILTIFTSIDVSNNQFEGEIPEML------GDFDALLVLNMSNNNFKGQIPATLG-----NLKELG  916 (1055)
Q Consensus       848 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l------~~l~~L~~L~Ls~N~l~g~ip~~l~-----~l~~L~  916 (1055)
                                      .+.+++|++++|.+++.-...+      ...+.|+.||+++|.++......+.     +.+.|+
T Consensus       242 ----------------~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~  305 (344)
T d2ca6a1         242 ----------------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  305 (344)
T ss_dssp             ----------------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             ----------------CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             ----------------2211110300475671566788877631568888989898986980899999999970389999


Q ss_pred             EEECCCCCCCCC
Q ss_conf             575888708434
Q 001554          917 SLDLSHNQLSGK  928 (1055)
Q Consensus       917 ~LdLs~N~lsg~  928 (1055)
                      .|+|++|+++..
T Consensus       306 ~L~l~~N~~~~~  317 (344)
T d2ca6a1         306 FLELNGNRFSEE  317 (344)
T ss_dssp             EEECTTSBSCTT
T ss_pred             EEECCCCCCCCC
T ss_conf             897879808986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.7e-18  Score=107.12  Aligned_cols=129  Identities=18%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12889997896568977898994313788666886658868644785557887745995789836556961000799996
Q 001554          667 LCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLE  746 (1055)
Q Consensus       667 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  746 (1055)
                      +.+...+++|++++|+++ .++..+..++.|+.|++++|+++..  +.|..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             168574848978899788-6576200414599898979978764--7744576130643102134577763223345344


Q ss_pred             EEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCCCEEE
Q ss_conf             99877981754547-0025999996798258738654699--86436589886996
Q 001554          747 VLDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNYDGSIKD--TQTANAFALLQIID  799 (1055)
Q Consensus       747 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~~~~~~~~--~~~~~~l~~L~~Ld  799 (1055)
                      .|++++|++..... ..+..+++|+.|++++|++... +.  ...+..++.|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEET
T ss_pred             CCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-CCHHHHHHHHCCCCCEEC
T ss_conf             3420300016654211001365320664079963456-106999998789958337

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-17  Score=101.41  Aligned_cols=15  Identities=20%  Similarity=0.346  Sum_probs=5.1

Q ss_pred             CCCCCEEECCCCCCC
Q ss_conf             877459957898365
Q 001554          718 ECSLRTLDLSQNHLA  732 (1055)
Q Consensus       718 l~~L~~L~L~~N~l~  732 (1055)
                      +++|+.|++++|.++
T Consensus        40 l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR   54 (162)
T ss_dssp             TTCCSEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
T ss_conf             145998989799787

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.8e-16  Score=96.65  Aligned_cols=121  Identities=18%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99978965689778989943137886668866588-68644785557887745995789836556961000799996998
Q 001554          671 FDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNN-EFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLEVLD  749 (1055)
Q Consensus       671 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  749 (1055)
                      ...+.++.+++.++ ..|..+..+++|++|++++| .++.+.+..|.++++|+.|++++|+++...+.+|..+++|+.|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf             99996985289976-58600257656574316898664436921225666667216202124774201112455433332


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             7798175454700259999967982587386546998643658988699656897855789577751341
Q 001554          750 VGKNQLNGSFPFWLETLPQLRVLVLQSNNYDGSIKDTQTANAFALLQIIDISSNNFSGNLPARWFQSWRG  819 (1055)
Q Consensus       750 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~~p~~~~~~~~~  819 (1055)
                      |++|+++...+..                          + ....|+.|++++|++.|.|...|+..|..
T Consensus        87 Ls~N~l~~l~~~~--------------------------~-~~~~l~~L~L~~Np~~C~C~~~~l~~~~~  129 (156)
T d2ifga3          87 LSFNALESLSWKT--------------------------V-QGLSLQELVLSGNPLHCSCALRWLQRWEE  129 (156)
T ss_dssp             CCSSCCSCCCSTT--------------------------T-CSCCCCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred             CCCCCCCCCCHHH--------------------------H-CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             2678785157456--------------------------3-35321243357986338811799999998

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=6.8e-16  Score=95.29  Aligned_cols=118  Identities=27%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             38980488676776600128899978965689778989943137886668866588686447855578877459957898
Q 001554          650 VFFSLASNNLSGGIPLSLCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQN  729 (1055)
Q Consensus       650 ~~l~l~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N  729 (1055)
                      +.+++++|+++....  +..+..|++|++++|+++ .+|..+..+++|+.|++++|.++..  +.+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCEEECCCC
T ss_conf             989868998988710--105898898979787168-6521565543135453243211235--74123355576888898


Q ss_pred             CCCCCCC-CCCCCCCCCCEEECCCCCCCCCC---CCCCCCCCCCCEE
Q ss_conf             3655696-10007999969987798175454---7002599999679
Q 001554          730 HLAGSLP-KSLSKCTSLEVLDVGKNQLNGSF---PFWLETLPQLRVL  772 (1055)
Q Consensus       730 ~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L  772 (1055)
                      +++.... ..+..+++|+.+++++|+++...   ......+|+|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf             65888882565379999999897996886826799999989673138

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.60  E-value=5.5e-18  Score=106.22  Aligned_cols=108  Identities=25%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12889997896568977898994313788666886658868644785557887745995789836556961000799996
Q 001554          667 LCNAFDLQVLDLSDNHLTGSIPSCLVSSNILKVLKLRNNEFLGTVPQVIGNECSLRTLDLSQNHLAGSLPKSLSKCTSLE  746 (1055)
Q Consensus       667 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  746 (1055)
                      +..+++|+.|++++|+++ .++ .+..+++|+.|++++|.+.. +|..+..++.|+.|++++|.++..  ..+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             HHCCCCCCEEECCCCCCC-CCC-CCCCCCCCCCHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
T ss_conf             762604615199446899-864-42478253573413534321-000033221233333333222222--2222222341


Q ss_pred             EEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCC
Q ss_conf             99877981754547-0025999996798258738
Q 001554          747 VLDVGKNQLNGSFP-FWLETLPQLRVLVLQSNNY  779 (1055)
Q Consensus       747 ~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~~  779 (1055)
                      .|++++|+++.... ..+..+++|+.|++++|++
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             CCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             1123410212554221236777630234279843

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9e-15  Score=89.44  Aligned_cols=86  Identities=22%  Similarity=0.186  Sum_probs=53.5

Q ss_pred             CCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             045529995378-4643676001498889789787873654468453386888857588870843474103299999947
Q 001554          864 LTIFTSIDVSNN-QFEGEIPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGKIPEKLATLNFLSVL  942 (1055)
Q Consensus       864 ~~~l~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~l  942 (1055)
                      ++.+++|++++| .++...+..|.+++.|+.|+|++|+|+...|..|..+++|+.|||++|+|+...+..+..+ .|+.+
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             CCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCC-CCCCC
T ss_conf             65657431689866443692122566666721620212477420111245543333226787851574563353-21243


Q ss_pred             ECCCCCCC
Q ss_conf             56799473
Q 001554          943 KLSQNLLV  950 (1055)
Q Consensus       943 ~ls~N~Ls  950 (1055)
                      ++++|.+.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             CCCCCCCC
T ss_conf             35798633

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.52  E-value=1e-16  Score=99.63  Aligned_cols=16  Identities=38%  Similarity=0.436  Sum_probs=5.5

Q ss_pred             CCCCCCCEEECCCCCC
Q ss_conf             3868888575888708
Q 001554          910 GNLKELGSLDLSHNQL  925 (1055)
Q Consensus       910 ~~l~~L~~LdLs~N~l  925 (1055)
                      ..+++|+.|+|++|.+
T Consensus       137 ~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         137 AALDKLEDLLLAGNPL  152 (198)
T ss_dssp             TTTTTCSEEEECSSHH
T ss_pred             CCCCCCCEEECCCCCC
T ss_conf             6777630234279843

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.2e-11  Score=70.90  Aligned_cols=65  Identities=25%  Similarity=0.263  Sum_probs=24.7

Q ss_pred             CCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf             04552999537846436--760014988897897878736544684533868888575888708434
Q 001554          864 LTIFTSIDVSNNQFEGE--IPEMLGDFDALLVLNMSNNNFKGQIPATLGNLKELGSLDLSHNQLSGK  928 (1055)
Q Consensus       864 ~~~l~~LdLs~N~l~g~--ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~  928 (1055)
                      ++.++.||||+|+++..  ++..+..+++|+.||||+|.++...+-.+.....|+.|++++|.++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCCEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCC
T ss_conf             8787886377766667731588986588561000435721342344222033104266489976767

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.46  E-value=7.9e-08  Score=53.21  Aligned_cols=116  Identities=9%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             CCCCCCCEEECCC-CCCCCC----CCHHCCCCCCCCEEEECCCCCCCCHHHCCCCHHHHHCCCCCCCEEECCCCCCC---
Q ss_conf             7999999884899-999888----87100068898689904799998211013228898607998863567884358---
Q 001554          129 DRLFSLTHLNLSY-SGFSGH----IPLEISSLKMLVSLDLSASGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDIS---  200 (1055)
Q Consensus       129 ~~l~~L~~L~Ls~-n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~---  200 (1055)
                      .+.+.|+.|+|++ +.+...    +...+...+.|++|++++|.+..   .....+...+...+.|++|++++|.++   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~---~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD---SEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH---HHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCH---HHHHHHHHHHHHCCCCCCEEEEHHHCCHHH
T ss_conf             28999819782799998989999999997637764540120156215---679887531000234330033010214599


Q ss_pred             CCCCCHHHCCCCCCCEEECCCCCCCCC-------CCCCCCCCCCCCEEECCCCC
Q ss_conf             999730001799875996799858998-------84222589998888798999
Q 001554          201 GADWGPILSILSNLRILSLPDCHVAGP-------IHSSLSKLQLLTHLNLDGND  247 (1055)
Q Consensus       201 ~~~~~~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~Ls~n~  247 (1055)
                      ...+...+...+.|++|++++|.....       +...+...+.|+.|+++.+.
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             999999998489389877887768886579999999999729985386486888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.99  E-value=1.5e-06  Score=46.50  Aligned_cols=116  Identities=13%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             CCCCCCCEEEECC-CCCCCCHHHCCCCHHHHHCCCCCCCEEECCCCCCC---CCCCCHHHCCCCCCCEEECCCCCCCCC-
Q ss_conf             0688986899047-99998211013228898607998863567884358---999730001799875996799858998-
Q 001554          153 SSLKMLVSLDLSA-SGLVAPIQLRRANLEKLVKNLTNLEELYLGGIDIS---GADWGPILSILSNLRILSLPDCHVAGP-  227 (1055)
Q Consensus       153 ~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~~l~~l~~L~~L~L~~n~l~---~~~~~~~l~~l~~L~~L~L~~n~l~~~-  227 (1055)
                      .+.+.|++|++++ +.+..   .....+...+...++|++|++++|.++   .......+...+.++.+++++|.+... 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~---~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HCCCCCCEEECCCCCCCCH---HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHH
T ss_conf             5599986887689999898---9999999888419825743015896117789999987752122101210254322014


Q ss_pred             ---CCCCCCCCCCCCE--EECCCCCCCC----CCCHHCCCCCCCCEEECCCCC
Q ss_conf             ---8422258999888--8798999999----830110599999699844786
Q 001554          228 ---IHSSLSKLQLLTH--LNLDGNDLSS----EVPDFLTNFSSLQYLHLSLCG  271 (1055)
Q Consensus       228 ---~~~~l~~l~~L~~--L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~  271 (1055)
                         +...+...+.|+.  |+++.|.+..    .+...+...+.|+.|+++.+.
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             78899999848652477321677867679999999999849984788581898